Page last updated: 2024-11-12

sepharose

Description Research Excerpts Clinical Trials Roles Classes Pathways Study Profile Bioassays Related Drugs Related Conditions Protein Interactions Research Growth Market Indicators

Description

agarose : A linear polysaccharide made up from alternating D-galactose and 3,6-anhydro-alpha-L-galactopyranose residues joined by alpha-(1->3)- and beta-(1->4)-linkages. [Chemical Entities of Biological Interest (ChEBI), Hastings J, Owen G, Dekker A, Ennis M, Kale N, Muthukrishnan V, Turner S, Swainston N, Mendes P, Steinbeck C. (2016). ChEBI in 2016: Improved services and an expanding collection of metabolites. Nucleic Acids Res]

Cross-References

ID SourceID
PubMed CID11966311
CHEBI ID2511
SCHEMBL ID1413225
MeSH IDM0019662

Synonyms (14)

Synonym
CHEBI:2511
[4)-3,6-an-alpha-l-galp-(1->3)-beta-d-galp-(1->]n
(1->4)-3,6-anhydro-alpha-l-galactopyranosyl-(1->3)-beta-d-galactopyranan
sepharose
agarose
9012-36-6
agarotetraose
2-[[3-[2-[(3,4-dihydroxy-2,6-dioxabicyclo[3.2.1]octan-8-yl)oxy]-3,5-dihydroxy-6-(hydroxymethyl)oxan-4-yl]oxy-4-hydroxy-2,6-dioxabicyclo[3.2.1]octan-8-yl]oxy]-6-(hydroxymethyl)oxane-3,4,5-triol
einecs 232-731-8
agarose gel beads
AKOS015916622
SCHEMBL1413225
(2s,3r,4s,5r,6r)-2-[[(1s,3s,4s,5s,8r)-3-[(2s,3r,4s,5s,6r)-2-[[(1s,3r,4s,5s,8r)-3,4-dihydroxy-2,6-dioxabicyclo[3.2.1]octan-8-yl]oxy]-3,5-dihydroxy-6-(hydroxymethyl)oxan-4-yl]oxy-4-hydroxy-2,6-dioxabicyclo[3.2.1]octan-8-yl]oxy]-6-(hydroxymethyl)oxane-3,4,5-
MJQHZNBUODTQTK-WKGBVCLCSA-N

Research Excerpts

Toxicity

ExcerptReferenceRelevance
"It has been suggested that the generation of toxic radicals plays an important role in toxicity by Adriamycin (ADR) on cancer cell lines and in vivo."( Cytotoxic effect of adriamycin and agarose-coupled adriamycin on glomerular epithelial cells: role of free radicals.
Bertelli, R; Ghiggeri, GM; Ginevri, F; Gusmano, R, 1991
)
0.28
" These results support the literature showing in vivo adverse effects of certain impression materials and/or their components in patients and practitioners."( Cytotoxicity of impression materials.
Gerhardt, DE; Sydiskis, RJ, 1993
)
0.29
"Cytotoxicity is defined as the in situ measurement of cellular function in response to a toxic substance."( Clonogenic cytotoxicity testing by microdrop encapsulation.
Goguen, B; Kedersha, N, 1993
)
0.29
" Abeta is toxic only when aggregated, however, the size and structure of the aggregated species associated with toxicity is unknown."( Development of a novel diffusion-based method to estimate the size of the aggregated Abeta species responsible for neurotoxicity.
Becerra-Arteaga, A; Good, TA; Wang, SS, 2002
)
0.31
" As work with the virus is recommended to be performed at biosafety level 3, validated methods to effectively inactivate the virus to enable the safe study of RNA, DNA, and protein from infected cells are also needed."( Propagation, Inactivation, and Safety Testing of SARS-CoV-2.
Basler, CF; Jureka, AS; Silvas, JA, 2020
)
0.56

Pharmacokinetics

ExcerptReferenceRelevance
"LC-MS/MS is a promising analytical platform for the quantification of recombinant therapeutic proteins in biological fluids for pharmacokinetic (PK) studies."( Quantification of endostar in rat plasma by LC-MS/MS and its application in a pharmacokinetic study.
Hao, HP; Li, YC; Liang, Y; Tang, ZY; Wang, GJ; Xiao, YN, 2012
)
0.38
" The engineered variant molecule had ~100- and ~1600-fold improvements in terminal half-life and exposure, respectively."( An engineered human follistatin variant: insights into the pharmacokinetic and pharmocodynamic relationships of a novel molecule with broad therapeutic potential.
Croy, JE; Datta-Mannan, A; Jones, BE; Krishnan, V; Yaden, B, 2013
)
0.39

Compound-Compound Interactions

ExcerptReferenceRelevance
" beta-TGF alone and in combination with RA or TNF were further tested on primary cultures from freshly resected human glioma biopsies (n = 13)."( Effects of type beta transforming growth factor in combination with retinoic acid or tumor necrosis factor on proliferation of a human glioblastoma cell line and clonogenic cells from freshly resected human brain tumors.
Dalen, A; Helseth, E; Unsgaard, G; Vik, R, 1988
)
0.27
" We therefore previously developed an on-chip multi-electrode array (MEA) system combined with an array of agarose microchambers (AMCs)."( Detection of tetanus-induced effects in linearly lined-up micropatterned neuronal networks: application of a multi-electrode array chip combined with agarose microstructures.
Suzuki, I; Yasuda, K, 2007
)
0.34
"A novel immunosensing system for determination of human alpha-fetoprotein (AFP) was proposed by using a boronate immunoaffinity column as the glycated antigen collector in combination with flow injection chemiluminescence."( Immunosensing system for alpha-fetoprotein through boronate immunoaffinity column in combination with flow injection chemiluminescence.
Liu, S; Wu, Y, 2009
)
0.35
" In the MiaPaCA cell line, synergy occurred when DFMO followed carboplatin and, at short exposure times, when SAHA was combined with carboplatin (regardless of order)."( Melding a New 3-Dimensional Agarose Colony Assay with the E(max) Model to Determine the Effects of Drug Combinations on Cancer Cells.
Kajiwara, Y; Kong, M; Lee, JJ; Levin, VA; Liu, DD; Panchabhai, S, 2009
)
0.35
"Platelet-rich plasma showed a positive effect on chondrocytes proliferation, differentiation and integration between native cartilage and engineered tissue when combined with agarose gel."( Platelet-rich plasma combined with agarose as a bioactive scaffold to enhance cartilage repair: an in vitro study.
Ding, P; Gui, J; Jiang, Y; Lu, Y; Ma, J; Xing, L; Xu, Y; Yang, X; Yin, Z, 2014
)
0.4
" One of the most promising alternative strategies to combat bacterial infections is the application of lytic phages combined with established and new antibacterials."( The impact of agarose immobilization on the activity of lytic Pseudomonas aeruginosa phages combined with chemicals.
Arabski, M; Dorotkiewicz-Jach, A; Drulis-Kawa, Z; Markwitz, P; Rachuna, J, 2023
)
0.91

Bioavailability

ExcerptReferenceRelevance
"The insulin-like growth factor-II/mannose 6-phosphate receptor (IGF-II/MPR) is a type I glycoprotein that mediates both the intracellular sorting of lysosomal enzymes bearing mannose 6-phosphate (Man-6-P) residues to the lysosome and the bioavailability of IGF-II."( Recognition of Dictyostelium discoideum lysosomal enzymes is conferred by the amino-terminal carbohydrate binding site of the insulin-like growth factor II/mannose 6-phosphate receptor.
Dahms, NM; Hancock, MK; Haskins, DJ; Marron-Terada, PG, 2000
)
0.31
" Within a one-dimensional heat diffusion model, the specific absorption rate (SAR) of the electromagnetic wave generated by a single antenna was deduced from the experimental data resulting in a penetration depth (1/e(2)) of approximately 4 cm."( Performance and use of current sheet antennae for RF-hyperthermia of a phantom monitored by 3 tesla MR-thermography.
Fähling, H; Hoffmann, W; Noeske, R; Rhein, KH; Rinneberg, H; Seifert, F; Wlodarczyk, W; Wojcik, F; Wust, P,
)
0.13
" A radio-frequency electromagnetic field is applied to the gel following the nanofluid injection and the initial rates of temperature rise at various locations are measured to obtain the specific absorption rate (SAR) distribution."( Controlling nanoparticle delivery in magnetic nanoparticle hyperthermia for cancer treatment: experimental study in agarose gel.
Ma, RH; Salloum, M; Weeks, D; Zhu, L, 2008
)
0.35
" In this work carbomer microgels were combined with agarose networks in a semi-interpenetrating polymer network structure, aiming at obtaining suitable delivery systems for the loading and release of molecules with poor bioavailability but high therapeutic interest, like resveratrol."( Cross-linked poly(acrylic acids) microgels and agarose as semi-interpenetrating networks for resveratrol release.
Albani, D; Giordano, C; Munarin, F; Petrini, P; Prina, E; Rodilossi, S; Tunesi, M, 2015
)
0.42
" FDTD simulation on the phantom model was performed in two steps: electromagnetic simulation to compute specific absorption rate and thermal simulation to compute temperature changes."( Nanoparticle-mediated radiofrequency capacitive hyperthermia: A phantom study with magnetic resonance thermometry.
Kim, KS; Lee, SY, 2015
)
0.42
" Here, we prepared nanoclusters composed of iron oxide magnetite nanoparticles crystallographically aligned and their specific absorption rate (SAR) values were calorimetrically determined in physiological fluids, agarose-gel-phantoms and ex vivo tumours extracted from mice challenged with B16-F0 melanoma cells."( Nanoclusters of crystallographically aligned nanoparticles for magnetic thermotherapy: aqueous ferrofluid, agarose phantoms and ex vivo melanoma tumour assessment.
Bab, MA; Blank, V; Coral, DF; Fernández van Raap, MB; Gonzalez, S; Muraca, D; Roguin, L; Roig, A; Saracco, GP; Setton-Avruj, PC; Soto, PA; Spinelli, E; Veiga, A, 2018
)
0.48

Dosage Studied

ExcerptRelevanceReference
" Dose-response experiments indicated that a single particle initiated the formation of a plaque, because a linear response was demonstrated with increased dosage."( Plaque assay of baculoviruses employing an agarose-nutrient overlay.
Knudson, DL, 1979
)
0.26
" The resulting dose-response lines were use to obtain the LH- and FSH-releasing potency of the material, expressed as a percentage of SME extract pre-incubated with normal rabbit serum."( Absence of an immunologically distinct follicle-stimulating hormone releasing factor in rat stalk median eminence extracts.
Jeffcoate, SL; Shahmanesh, M, 1976
)
0.26
" Dose-response relation in serum calcium-lowering activity was examined with a sample purified from the extracts, and a linear dependence of the response to log dose was recognized over a moderate range of doses."( A hypocalcemic and lympnocyte-stimulating substance isolated from thymus extracts, and its physicochemical properties.
Hayase, S; Mizutani Shimizu, M; Mizutani, A; Mizutani, T; Suzuki, I, 1975
)
0.25
" Dose-response curves with serums from several ragweed-sensitive subjects were not parallel when plotted on a semilog scale."( Measurement of IgE antibodies by the radioallergosorbent test. II. Analyses of quantitative relationships in the test.
Gleich, GJ; Jones, RT, 1975
)
0.25
" As only one combination of doses of superoxide dismutase and catalase was administered, however, it may be that other dosage schedules might be efficacious."( Effect of intrathecal superoxide dismutase and catalase on oxyhemoglobin-induced vasospasm in monkeys.
Grace, MG; Macdonald, RL; Poznansky, MJ; Runzer, TD; Weir, BK, 1992
)
0.28
" Dose-response studies with progesterone and estradiol indicated no benefit from adding these substances to the culture medium."( Effects of hormonal growth factors on colony formation and chemosensitivity of human tumors in agarose.
Chien, FW; Goodwein, SN; Kern, DH; Sondak, VK, 1987
)
0.27
" Analysis of the virus dose-response curves obtained with twofold virus dilutions showed that one virus particle is sufficient to induce EBNA in a cell."( Can Epstein-Barr virus infect and transform all the B-lymphocytes of human cord blood?
Ernberg, I; Zerbini, M, 1983
)
0.27
" In vivo detoxification trials in dosed rabbits and dogs showed the effectiveness of the APMMB for removal of mercury compounds by hemoperfusion."( Extracorporeal removal of mercury by hemoperfusion through agarose-polymercaptal microsphere beads.
Dalit, M; Marcus, L; Margel, S; Mashiah, A; Savin, H,
)
0.13
" The two techniques had different dose-response relationships."( Some characteristics of immunofluorescence tests for antibodies against gluten, using wheat grain sections or gliadin coated sepharose beads.
Jonsson, J; Schilling, W, 1981
)
0.47
" Dose-response experiments indicated that a single particle initiated the formation of a plaque."( Plaque assay of Heliothis zea baculovirus employing a mixed agarose overlay.
Maramorosch, K; Yamada, K, 1981
)
0.26
" In the present work, human serum has been dosed with the phenolic compounds of immediate relevance in exogenous and endogenous intoxication, and the effectiveness of various adsorbent materials for the elimination of the toxins from the serum has been investigated."( Properties of agarose-encapsulated adsorbents. II. Elimination of endogenous and exogenous phenolic compounds from human serum.
Brunner, G; Harstick, K; Holloway, CJ; Neumann, E, 1981
)
0.26
" The dose-response curve of the agarose-PHA-E-Ep complexes for erythroid colony formation was similar to that of unbound Ep, and after removal of cells adherent to the beads, the immobilized Ep could be reused."( Stimulation of erythroid colony formation in vitro by erythropoietin immobilized on agarose-bound lectins.
Roodman, GD; Spivak, JL; Zanjani, ED, 1981
)
0.26
" The dose-response activity profile is nonlinear, but becomes linear when C1 IS ALLOWED TO SELF-ACTIVATE."( The first component of complement. I. Purification and properties of native C1.
Chapuis, RM; Medicus, RG, 1980
)
0.26
" The method was also tested on milk from cows dosed with each of the tetracyclines."( Simultaneous determination of multiple tetracycline residues in milk using metal chelate affinity chromatography.
Carson, MC,
)
0.13
" After the administration of DNP-poly[A] at a dosage of 100 mg/kg of body weight three times a week over a 3-week period, RT could no longer be detected by an ultrasensitive RT-PCR assay."( Inhibition of murine leukemia virus with poly-2'-O-(2,4-dinitrophenyl)poly[A].
Ashun, MA; Hu, Y; Kang, I; Li, CC; Wang, JH, 1996
)
0.29
" Dose-response experiments were also performed with the polycationic (positively charged) polysaccharide chitosan covalently coupled to agarose."( The polarity and magnitude of ambient charge influences three-dimensional neurite extension from DRGs.
Bellamkonda, RV; Dillon, GP; Yu, X, 2000
)
0.31
", to improve its dose-response sensitivity, reproducibility and measurement accuracy."( Radiation dosimetry using Fricke-infused gels and magnetic resonance imaging.
Chu, WC, 2001
)
0.31
" The present method provides a sensitive estrogen-dependent dose-response curve down to approximately 10(-13) M in the case of DES."( A screening method for estrogens using an array-type DNA glass slide.
Kim, SB; Ozawa, T; Umezawa, Y, 2003
)
0.32
"Several factors modulate the position of the dose-response curve of steroid receptor-agonist complexes and the partial agonist activity of antagonist complexes, thereby causing differential gene activation by circulating hormones and unequal gene repression during endocrine therapies with antisteroids."( Glucocorticoid receptor ligand binding domain is sufficient for the modulation of glucocorticoid induction properties by homologous receptors, coactivator transcription intermediary factor 2, and Ubc9.
Blackford, JA; Cho, S; Kagan, BL; Simons, SS; Szapary, D, 2005
)
0.33
" Neither the experimentally derived dose-response relationships for chemicals commonly used in the mounting of live fish larvae, nor their effect on the stress of the animal, are currently available in the research literature."( Dose-dependent effects of chemical immobilization on the heart rate of embryonic zebrafish.
Craig, MP; Gilday, SD; Hove, JR, 2006
)
0.33
" The non-linear dose-response E(max) model and the interaction index based on the Loewe additivity are applied to calculate two-drug synergy, additive, and antagonistic interactions."( Melding a New 3-Dimensional Agarose Colony Assay with the E(max) Model to Determine the Effects of Drug Combinations on Cancer Cells.
Kajiwara, Y; Kong, M; Lee, JJ; Levin, VA; Liu, DD; Panchabhai, S, 2009
)
0.35
" The results in this study suggest that (i) there is a significant linear dose-response relationship between the agarose gel's density and DNA migration and that damaged cells are more sensitive to the agarose gel's density; (ii) incubation with formamidopyrimidine DNA glycosylase for 10 min is inadequate, whereas 30 min is sufficient; (iii) the typically used 20 min of alkaline treatment might be to short when analysing samples that contain particular alkali-labile sites (ALS) and (iv) the duration of electrophoresis as well as the strength of the electric field applied affects the DNA migration."( The effects on DNA migration of altering parameters in the comet assay protocol such as agarose density, electrophoresis conditions and durations of the enzyme or the alkaline treatments.
Ersson, C; Möller, L, 2011
)
0.37
" A dose-response curve was obtained and the linear dynamic range of the assay was established over 1 ng/mL to 50 ng/mL with a limit of detection less than 1 ng/mL."( A disposable bio-nano-chip using agarose beads for high performance immunoassays.
Chou, J; Christodoulides, N; Du, N; Floriano, PN; Kulla, E; McDevitt, JT, 2011
)
0.37
" Gamma-radiation dose-response survival curves could be successfully generated for both fibroblast cell lines using this method, which yielded no such effects in the transformed/malignant cell lines tested."( Agarose overlay selectively improves macrocolony formation and radiosensitivity assessment in primary fibroblasts.
Chandna, S; Dagur, RS; Haghdoost, S; Harms-Ringdahl, M; Mathur, A; Natarajan, AT, 2014
)
0.4
" In an attempt to further elucidate the dosage form behavior, the diffusion coefficients in the gel as well as in the stent coating were systematically varied in the finite-element model."( Impact of different tissue-simulating hydrogel compartments on in vitro release and distribution from drug-eluting stents.
Nagel, S; Seidlitz, A; Semmling, B; Sternberg, K; Weitschies, W, 2014
)
0.4
" Aiming to establish a parenteral dosage form with prolonged release properties, a biodegradable implant was developed, based on a combination of nanoencapsulation of protein-heparin complexes, creation of a slow release matrix by freeze-drying, and compression using hyaluronan and methylcellulose."( Optimizing novel implant formulations for the prolonged release of biopharmaceuticals using in vitro and in vivo imaging techniques.
Ashtikar, M; Beyer, S; de Bruin, N; Lange, CM; Mäntele, W; Parnham, MJ; Rüschenbaum, S; Schmidt, M; Vogel, V; Wacker, MG; Xie, L, 2016
)
0.43
" In each of these cases, MNPs with optimal heating performance can be used to maximize therapeutic effect while minimizing the required dosage of MNPs."( Determining iron oxide nanoparticle heating efficiency and elucidating local nanoparticle temperature for application in agarose gel-based tumor model.
Brazel, CS; Dombrowsky, AR; Johnson, MP; Nikles, DE; Paulson, AL; Shah, RR, 2016
)
0.43
" These bacterial hydrogels allow spatially confined protein expression and dosed protein release over several weeks, regulated by the area and extent of light exposure."( Optoregulated Protein Release from an Engineered Living Material.
Del Campo, A; Sankaran, S, 2019
)
0.51
" In this work, a thin agarose hydrogel layer surrounding the tested dosage form was proposed to mimic the tissue."( In-vitro drug release testing of parenteral formulations via an agarose gel envelope to closer mimic tissue firmness.
Kožák, J; Lamprecht, A; Rabišková, M, 2021
)
0.62
" Reaction temperature, time and sodium periodate dosage are inversely proportional to the decline of the gelling temperature (Tg) and melting temperature (Tm); and the Tg and Tm for the OAG sample obtained are even 19 °C and 22 °C lower than that of the original AG."( Synthesis, characterization and potential applications for oxidized agarose.
Cai, Y; Gu, Q; Li, C; Li, X; Liao, L; Xie, L, 2023
)
0.91
[information is derived through text-mining from research data collected from National Library of Medicine (NLM), extracted Dec-2023]

Research

Studies (7,204)

TimeframeStudies, This Drug (%)All Drugs %
pre-19902776 (38.53)18.7374
1990's1309 (18.17)18.2507
2000's1314 (18.24)29.6817
2010's1331 (18.48)24.3611
2020's474 (6.58)2.80
[information is prepared from research data collected from National Library of Medicine (NLM), extracted Dec-2023]

Market Indicators

Research Demand Index: 48.19

According to the monthly volume, diversity, and competition of internet searches for this compound, as well the volume and growth of publications, there is estimated to be strong demand-to-supply ratio for research on this compound.

MetricThis Compound (vs All)
Research Demand Index48.19 (24.57)
Research Supply Index8.92 (2.92)
Research Growth Index4.50 (4.65)
Search Engine Demand Index92.79 (26.88)
Search Engine Supply Index2.22 (0.95)

This Compound (48.19)

All Compounds (24.57)

Study Types

Publication TypeThis drug (%)All Drugs (%)
Trials10 (0.13%)5.53%
Reviews107 (1.43%)6.00%
Case Studies27 (0.36%)4.05%
Observational0 (0.00%)0.25%
Other7,341 (98.08%)84.16%
[information is prepared from research data collected from National Library of Medicine (NLM), extracted Dec-2023]