Page last updated: 2024-12-08

Pedunculagin

Description Research Excerpts Clinical Trials Roles Classes Pathways Study Profile Bioassays Related Drugs Related Conditions Protein Interactions Research Growth Market Indicators

Description

pedunculagin: from the walnut (Juglans regia) pellicle [Medical Subject Headings (MeSH), National Library of Medicine, extracted Dec-2023]

Cross-References

ID SourceID
PubMed CID442688
CHEMBL ID506204
CHEBI ID7948

Synonyms (9)

Synonym
pedunculagin
C10236 ,
7045-42-3
bdbm50242262
chebi:7948 ,
CHEMBL506204 ,
DTXSID20990656
Q7160092
(1r,2s,19r,22r)-7,8,9,12,13,14,20,28,29,30,33,34,35-tridecahydroxy-3,18,21,24,39-pentaoxaheptacyclo[20.17.0.02,19.05,10.011,16.026,31.032,37]nonatriaconta-5,7,9,11,13,15,26,28,30,32,34,36-dodecaene-4,17,25,38-tetrone
[information is derived through text-mining from research data collected from National Library of Medicine (NLM), extracted Dec-2023]

Drug Classes (1)

ClassDescription
tanninAny of a group of astringent polyphenolic vegetable principles or compounds, chiefly complex glucosides of catechol and pyrogallol.
[compound class information is derived from Chemical Entities of Biological Interest (ChEBI), Hastings J, Owen G, Dekker A, Ennis M, Kale N, Muthukrishnan V, Turner S, Swainston N, Mendes P, Steinbeck C. (2016). ChEBI in 2016: Improved services and an expanding collection of metabolites. Nucleic Acids Res]

Protein Targets (4)

Inhibition Measurements

ProteinTaxonomyMeasurementAverageMin (ref.)Avg (ref.)Max (ref.)Bioassay(s)
Prothrombin Bos taurus (cattle)IC50 (µMol)0.16500.00890.88576.0000AID402819; AID402820
Prothrombin Bos taurus (cattle)Ki0.04200.00112.06948.3700AID402818
Coagulation factor XHomo sapiens (human)IC50 (µMol)0.56000.00030.593710.0000AID402822
Coagulation factor XHomo sapiens (human)Ki0.99000.00000.47089.0000AID402821
5-hydroxytryptamine receptor 2ARattus norvegicus (Norway rat)Ki0.04200.00010.601710.0000AID402818
Squalene monooxygenase Rattus norvegicus (Norway rat)IC50 (µMol)2.00000.06102.344610.0000AID357307
[prepared from compound, protein, and bioassay information from National Library of Medicine (NLM), extracted Dec-2023]

Biological Processes (7)

Processvia Protein(s)Taxonomy
proteolysisProthrombin Bos taurus (cattle)
acute-phase responseProthrombin Bos taurus (cattle)
positive regulation of blood coagulationProthrombin Bos taurus (cattle)
protein polymerizationProthrombin Bos taurus (cattle)
proteolysisCoagulation factor XHomo sapiens (human)
blood coagulationCoagulation factor XHomo sapiens (human)
positive regulation of cell migrationCoagulation factor XHomo sapiens (human)
positive regulation of TOR signalingCoagulation factor XHomo sapiens (human)
[Information is prepared from geneontology information from the June-17-2024 release]

Molecular Functions (5)

Processvia Protein(s)Taxonomy
serine-type endopeptidase activityProthrombin Bos taurus (cattle)
calcium ion bindingProthrombin Bos taurus (cattle)
protein bindingProthrombin Bos taurus (cattle)
fibrinogen bindingProthrombin Bos taurus (cattle)
serine-type endopeptidase activityCoagulation factor XHomo sapiens (human)
calcium ion bindingCoagulation factor XHomo sapiens (human)
protein bindingCoagulation factor XHomo sapiens (human)
phospholipid bindingCoagulation factor XHomo sapiens (human)
[Information is prepared from geneontology information from the June-17-2024 release]

Ceullar Components (6)

Processvia Protein(s)Taxonomy
extracellular regionCoagulation factor XHomo sapiens (human)
endoplasmic reticulum lumenCoagulation factor XHomo sapiens (human)
Golgi lumenCoagulation factor XHomo sapiens (human)
plasma membraneCoagulation factor XHomo sapiens (human)
external side of plasma membraneCoagulation factor XHomo sapiens (human)
extracellular spaceCoagulation factor XHomo sapiens (human)
[Information is prepared from geneontology information from the June-17-2024 release]

Bioassays (45)

Assay IDTitleYearJournalArticle
AID402810Anticoagulant activity in rabbit plasma assessed as thrombin time at 0.1 mM after 2 mins1998Journal of natural products, Nov, Volume: 61, Issue:11
Effects of tannins from Geum japonicum on the catalytic activity of thrombin and factor Xa of blood coagulation cascade.
AID402804Anticoagulant activity in rabbit plasma assessed as thrombin time at 0.5 mM after 2 mins1998Journal of natural products, Nov, Volume: 61, Issue:11
Effects of tannins from Geum japonicum on the catalytic activity of thrombin and factor Xa of blood coagulation cascade.
AID402813Anticoagulant activity in rabbit plasma assessed as thrombin time at 0.75 mM after 2 mins1998Journal of natural products, Nov, Volume: 61, Issue:11
Effects of tannins from Geum japonicum on the catalytic activity of thrombin and factor Xa of blood coagulation cascade.
AID402812Anticoagulant activity in rabbit plasma assessed as prothrombin time at 0.75 mM after 2 mins1998Journal of natural products, Nov, Volume: 61, Issue:11
Effects of tannins from Geum japonicum on the catalytic activity of thrombin and factor Xa of blood coagulation cascade.
AID402824Ratio of Ki for human factor 10a to Ki for bovine thrombin1998Journal of natural products, Nov, Volume: 61, Issue:11
Effects of tannins from Geum japonicum on the catalytic activity of thrombin and factor Xa of blood coagulation cascade.
AID358169Cytotoxicity against human TE671 cells by tetrazolium salt-based colorimetric assay1992Journal of natural products, Aug, Volume: 55, Issue:8
Antitumor agents, 129. Tannins and related compounds as selective cytotoxic agents.
AID402803Anticoagulant activity in rabbit plasma assessed as prothrombin time at 0.5 mM after 2 mins1998Journal of natural products, Nov, Volume: 61, Issue:11
Effects of tannins from Geum japonicum on the catalytic activity of thrombin and factor Xa of blood coagulation cascade.
AID398697Inhibition of lipid peroxidation in Sprague-Dawley rat heart mitochondria assessed as inhibition of FeSO4-induced malondialdehyde formation1995Journal of natural products, Sep, Volume: 58, Issue:9
Effect of anthraquinone derivatives on lipid peroxidation in rat heart mitochondria: structure-activity relationship.
AID357307Inhibition of C-terminal hexahistidine-tagged rat recombinant squalene epoxidase without N-terminal putative membrane domain expressed in Escherichia coli2001Journal of natural products, Aug, Volume: 64, Issue:8
Ellagitannins and hexahydroxydiphenoyl esters as inhibitors of vertebrate squalene epoxidase.
AID358166Cytotoxicity against human KB cells by tetrazolium salt-based colorimetric assay1992Journal of natural products, Aug, Volume: 55, Issue:8
Antitumor agents, 129. Tannins and related compounds as selective cytotoxic agents.
AID402808Anticoagulant activity in rabbit plasma assessed as activated partial thromboplastin time at 0.25 mM after 2 mins1998Journal of natural products, Nov, Volume: 61, Issue:11
Effects of tannins from Geum japonicum on the catalytic activity of thrombin and factor Xa of blood coagulation cascade.
AID402806Anticoagulant activity in rabbit plasma assessed as prothrombin time at 0.25 mM after 2 mins1998Journal of natural products, Nov, Volume: 61, Issue:11
Effects of tannins from Geum japonicum on the catalytic activity of thrombin and factor Xa of blood coagulation cascade.
AID465730Antiviral activity against E1 and E2 envelope protein expressing HCV infected in HepG2 cells assessed as inhibition of viral invasion at 1 uM after 24 hrs by SEAP reporter gene assay2010Bioorganic & medicinal chemistry letters, Mar-01, Volume: 20, Issue:5
Tellimagrandin I, HCV invasion inhibitor from Rosae Rugosae Flos.
AID400987Inhibition of AMV reverse transcriptase activity assessed as incorporation of dTMP in poly(rA)-oligo(dT) at 100 uM
AID465732Antiviral activity against G envelope protein expressing HCV infected in HepG2 cells assessed as inhibition of viral invasion at 3 uM after 24 hrs by SEAP reporter gene assay2010Bioorganic & medicinal chemistry letters, Mar-01, Volume: 20, Issue:5
Tellimagrandin I, HCV invasion inhibitor from Rosae Rugosae Flos.
AID402814Anticoagulant activity in rabbit plasma assessed as activated partial thromboplastin time at 0.75 mM after 2 mins1998Journal of natural products, Nov, Volume: 61, Issue:11
Effects of tannins from Geum japonicum on the catalytic activity of thrombin and factor Xa of blood coagulation cascade.
AID400992Inhibition of AMV reverse transcriptase activity assessed as incorporation of dGMP in poly(rC)-oligo(dG) at 100 uM
AID465728Antiviral activity against E1 and E2 envelope protein expressing HCV infected in HepG2 cells assessed as inhibition of viral invasion at 10 uM after 24 hrs by SEAP reporter gene assay2010Bioorganic & medicinal chemistry letters, Mar-01, Volume: 20, Issue:5
Tellimagrandin I, HCV invasion inhibitor from Rosae Rugosae Flos.
AID402805Anticoagulant activity in rabbit plasma assessed as activated partial thromboplastin time at 0.5 mM after 2 mins1998Journal of natural products, Nov, Volume: 61, Issue:11
Effects of tannins from Geum japonicum on the catalytic activity of thrombin and factor Xa of blood coagulation cascade.
AID358168Cytotoxicity against human HCT8 cells by tetrazolium salt-based colorimetric assay1992Journal of natural products, Aug, Volume: 55, Issue:8
Antitumor agents, 129. Tannins and related compounds as selective cytotoxic agents.
AID402811Anticoagulant activity in rabbit plasma assessed as activated partial thromboplastin time at 0.1 mM after 2 mins1998Journal of natural products, Nov, Volume: 61, Issue:11
Effects of tannins from Geum japonicum on the catalytic activity of thrombin and factor Xa of blood coagulation cascade.
AID358167Cytotoxicity against human A549 cells by tetrazolium salt-based colorimetric assay1992Journal of natural products, Aug, Volume: 55, Issue:8
Antitumor agents, 129. Tannins and related compounds as selective cytotoxic agents.
AID402819Inhibition of bovine thrombin-catalyzed hydrolysis of S-22381998Journal of natural products, Nov, Volume: 61, Issue:11
Effects of tannins from Geum japonicum on the catalytic activity of thrombin and factor Xa of blood coagulation cascade.
AID400986Inhibition of AMV reverse transcriptase activity assessed as incorporation of dTMP in poly(rA)-oligo(dT) at 10 uM
AID402826Toxicity in po dosed mouse1998Journal of natural products, Nov, Volume: 61, Issue:11
Effects of tannins from Geum japonicum on the catalytic activity of thrombin and factor Xa of blood coagulation cascade.
AID398696Inhibition of lipid peroxidation in Sprague-Dawley rat heart mitochondria assessed as inhibition of FeSO4-induced oxygen consumption1995Journal of natural products, Sep, Volume: 58, Issue:9
Effect of anthraquinone derivatives on lipid peroxidation in rat heart mitochondria: structure-activity relationship.
AID402822Inhibition of human factor 10a-catalyzed hydrolysis of S-22221998Journal of natural products, Nov, Volume: 61, Issue:11
Effects of tannins from Geum japonicum on the catalytic activity of thrombin and factor Xa of blood coagulation cascade.
AID400985Inhibition of AMV reverse transcriptase activity assessed as incorporation of dTMP in poly(rA)-oligo(dT) at 1 uM
AID402809Anticoagulant activity in rabbit plasma assessed as prothrombin time at 0.1 mM after 2 mins1998Journal of natural products, Nov, Volume: 61, Issue:11
Effects of tannins from Geum japonicum on the catalytic activity of thrombin and factor Xa of blood coagulation cascade.
AID465731Antiviral activity against G envelope protein expressing HCV infected in HepG2 cells assessed as inhibition of viral invasion at 10 uM after 24 hrs by SEAP reporter gene assay2010Bioorganic & medicinal chemistry letters, Mar-01, Volume: 20, Issue:5
Tellimagrandin I, HCV invasion inhibitor from Rosae Rugosae Flos.
AID402807Anticoagulant activity in rabbit plasma assessed as thrombin time at 0.25 mM after 2 mins1998Journal of natural products, Nov, Volume: 61, Issue:11
Effects of tannins from Geum japonicum on the catalytic activity of thrombin and factor Xa of blood coagulation cascade.
AID465733Antiviral activity against G envelope protein expressing HCV infected in HepG2 cells assessed as inhibition of viral invasion at 1 uM after 24 hrs by SEAP reporter gene assay2010Bioorganic & medicinal chemistry letters, Mar-01, Volume: 20, Issue:5
Tellimagrandin I, HCV invasion inhibitor from Rosae Rugosae Flos.
AID400984Inhibition of AMV reverse transcriptase activity assessed as incorporation of dTMP in poly(rA)-oligo(dT) at 0.1 uM
AID465729Antiviral activity against E1 and E2 envelope protein expressing HCV infected in HepG2 cells assessed as inhibition of viral invasion at 3 uM after 24 hrs by SEAP reporter gene assay2010Bioorganic & medicinal chemistry letters, Mar-01, Volume: 20, Issue:5
Tellimagrandin I, HCV invasion inhibitor from Rosae Rugosae Flos.
AID400989Inhibition of AMV reverse transcriptase activity assessed as incorporation of dGMP in poly(rC)-oligo(dG) at 0.1 uM
AID402820Inhibition of bovine thrombin-catalyzed hydrolysis of fibrinogen1998Journal of natural products, Nov, Volume: 61, Issue:11
Effects of tannins from Geum japonicum on the catalytic activity of thrombin and factor Xa of blood coagulation cascade.
AID400988Inhibition of AMV reverse transcriptase activity assessed as incorporation of dTMP in poly(rA)-oligo(dT) at 1000 uM
AID403101Toxicity in po dosed rat1998Journal of natural products, Nov, Volume: 61, Issue:11
Effects of tannins from Geum japonicum on the catalytic activity of thrombin and factor Xa of blood coagulation cascade.
AID400991Inhibition of AMV reverse transcriptase activity assessed as incorporation of dGMP in poly(rC)-oligo(dG) at 10 uM
AID400990Inhibition of AMV reverse transcriptase activity assessed as incorporation of dGMP in poly(rC)-oligo(dG) at 1 uM
AID402818Inhibition of bovine thrombin by Lineweaver-Burke plot analysis1998Journal of natural products, Nov, Volume: 61, Issue:11
Effects of tannins from Geum japonicum on the catalytic activity of thrombin and factor Xa of blood coagulation cascade.
AID358165Cytotoxicity against human PRMI7951 cells by tetrazolium salt-based colorimetric assay1992Journal of natural products, Aug, Volume: 55, Issue:8
Antitumor agents, 129. Tannins and related compounds as selective cytotoxic agents.
AID400993Inhibition of AMV reverse transcriptase activity assessed as incorporation of dGMP in poly(rC)-oligo(dG) at 1000 uM
AID337646Astringency in human blood by heme-analysis relative to tannin1994Journal of natural products, Oct, Volume: 57, Issue:10
Ellagitannins and complex tannins from Quercus petraea bark.
AID402821Inhibition of human factor 10a1998Journal of natural products, Nov, Volume: 61, Issue:11
Effects of tannins from Geum japonicum on the catalytic activity of thrombin and factor Xa of blood coagulation cascade.
[information is prepared from bioassay data collected from National Library of Medicine (NLM), extracted Dec-2023]

Research

Studies (10)

TimeframeStudies, This Drug (%)All Drugs %
pre-19900 (0.00)18.7374
1990's4 (40.00)18.2507
2000's1 (10.00)29.6817
2010's4 (40.00)24.3611
2020's1 (10.00)2.80
[information is prepared from research data collected from National Library of Medicine (NLM), extracted Dec-2023]

Market Indicators

Research Demand Index: 30.53

According to the monthly volume, diversity, and competition of internet searches for this compound, as well the volume and growth of publications, there is estimated to be moderate demand-to-supply ratio for research on this compound.

MetricThis Compound (vs All)
Research Demand Index30.53 (24.57)
Research Supply Index2.48 (2.92)
Research Growth Index4.66 (4.65)
Search Engine Demand Index36.71 (26.88)
Search Engine Supply Index2.00 (0.95)

This Compound (30.53)

All Compounds (24.57)

Study Types

Publication TypeThis drug (%)All Drugs (%)
Trials0 (0.00%)5.53%
Reviews0 (0.00%)6.00%
Case Studies0 (0.00%)4.05%
Observational0 (0.00%)0.25%
Other11 (100.00%)84.16%
[information is prepared from research data collected from National Library of Medicine (NLM), extracted Dec-2023]