Page last updated: 2024-11-13

dihydronovobiocin

Description Research Excerpts Clinical Trials Roles Classes Pathways Study Profile Bioassays Related Drugs Related Conditions Protein Interactions Research Growth Market Indicators

Description

dihydronovobiocin: high affinity for DNA gyrase B; structure given [Medical Subject Headings (MeSH), National Library of Medicine, extracted Dec-2023]

Cross-References

ID SourceID
PubMed CID118796856
CHEMBL ID4851364
MeSH IDM0260186

Synonyms (10)

Synonym
novobiocin, dihydro-
brn 0074168
dihydronovobiocin
4-18-00-08124 (beilstein handbook reference)
29826-16-2
DTXSID601316470
[(3r,4s,5r,6r)-5-hydroxy-6-[4-hydroxy-3-[[4-hydroxy-3-(3-methylbutyl)benzoyl]amino]-8-methyl-2-oxochromen-7-yl]oxy-3-methoxy-2,2-dimethyloxan-4-yl] carbamate
CHEMBL4851364 ,
bdbm50575781
AKOS040756002
[information is derived through text-mining from research data collected from National Library of Medicine (NLM), extracted Dec-2023]

Protein Targets (2)

Inhibition Measurements

ProteinTaxonomyMeasurementAverageMin (ref.)Avg (ref.)Max (ref.)Bioassay(s)
Microtubule-associated proteins 1A/1B light chain 3BHomo sapiens (human)Ki8.10008.10008.10008.1000AID1775857
Microtubule-associated proteins 1A/1B light chain 3AHomo sapiens (human)Ki3.30003.30006.05008.8000AID1775854
[prepared from compound, protein, and bioassay information from National Library of Medicine (NLM), extracted Dec-2023]

Activation Measurements

ProteinTaxonomyMeasurementAverageMin (ref.)Avg (ref.)Max (ref.)Bioassay(s)
Microtubule-associated proteins 1A/1B light chain 3AHomo sapiens (human)Kd2.80002.80005.15007.5000AID1775855
[prepared from compound, protein, and bioassay information from National Library of Medicine (NLM), extracted Dec-2023]

Biological Processes (17)

Processvia Protein(s)Taxonomy
autophagosome assemblyMicrotubule-associated proteins 1A/1B light chain 3BHomo sapiens (human)
mitophagyMicrotubule-associated proteins 1A/1B light chain 3BHomo sapiens (human)
autophagyMicrotubule-associated proteins 1A/1B light chain 3BHomo sapiens (human)
cellular response to starvationMicrotubule-associated proteins 1A/1B light chain 3BHomo sapiens (human)
macroautophagyMicrotubule-associated proteins 1A/1B light chain 3BHomo sapiens (human)
autophagosome maturationMicrotubule-associated proteins 1A/1B light chain 3BHomo sapiens (human)
autophagy of mitochondrionMicrotubule-associated proteins 1A/1B light chain 3BHomo sapiens (human)
cellular response to nitrogen starvationMicrotubule-associated proteins 1A/1B light chain 3BHomo sapiens (human)
autophagy of mitochondrionMicrotubule-associated proteins 1A/1B light chain 3AHomo sapiens (human)
autophagosome assemblyMicrotubule-associated proteins 1A/1B light chain 3AHomo sapiens (human)
JNK cascadeMicrotubule-associated proteins 1A/1B light chain 3AHomo sapiens (human)
cellular response to starvationMicrotubule-associated proteins 1A/1B light chain 3AHomo sapiens (human)
response to iron(II) ionMicrotubule-associated proteins 1A/1B light chain 3AHomo sapiens (human)
response to lead ionMicrotubule-associated proteins 1A/1B light chain 3AHomo sapiens (human)
macroautophagyMicrotubule-associated proteins 1A/1B light chain 3AHomo sapiens (human)
cellular response to amino acid starvationMicrotubule-associated proteins 1A/1B light chain 3AHomo sapiens (human)
p38MAPK cascadeMicrotubule-associated proteins 1A/1B light chain 3AHomo sapiens (human)
SMAD protein signal transductionMicrotubule-associated proteins 1A/1B light chain 3AHomo sapiens (human)
cellular response to hydrogen peroxideMicrotubule-associated proteins 1A/1B light chain 3AHomo sapiens (human)
cellular response to copper ionMicrotubule-associated proteins 1A/1B light chain 3AHomo sapiens (human)
cellular response to oxygen-glucose deprivationMicrotubule-associated proteins 1A/1B light chain 3AHomo sapiens (human)
autophagosome maturationMicrotubule-associated proteins 1A/1B light chain 3AHomo sapiens (human)
autophagy of mitochondrionMicrotubule-associated proteins 1A/1B light chain 3AHomo sapiens (human)
cellular response to nitrogen starvationMicrotubule-associated proteins 1A/1B light chain 3AHomo sapiens (human)
[Information is prepared from geneontology information from the June-17-2024 release]

Molecular Functions (6)

Processvia Protein(s)Taxonomy
protein bindingMicrotubule-associated proteins 1A/1B light chain 3BHomo sapiens (human)
phosphatidylethanolamine bindingMicrotubule-associated proteins 1A/1B light chain 3BHomo sapiens (human)
ubiquitin protein ligase bindingMicrotubule-associated proteins 1A/1B light chain 3BHomo sapiens (human)
ceramide bindingMicrotubule-associated proteins 1A/1B light chain 3BHomo sapiens (human)
microtubule bindingMicrotubule-associated proteins 1A/1B light chain 3BHomo sapiens (human)
protein bindingMicrotubule-associated proteins 1A/1B light chain 3AHomo sapiens (human)
phospholipid bindingMicrotubule-associated proteins 1A/1B light chain 3AHomo sapiens (human)
ubiquitin protein ligase bindingMicrotubule-associated proteins 1A/1B light chain 3AHomo sapiens (human)
microtubule bindingMicrotubule-associated proteins 1A/1B light chain 3AHomo sapiens (human)
phosphatidylethanolamine bindingMicrotubule-associated proteins 1A/1B light chain 3AHomo sapiens (human)
[Information is prepared from geneontology information from the June-17-2024 release]

Ceullar Components (14)

Processvia Protein(s)Taxonomy
autophagosome membraneMicrotubule-associated proteins 1A/1B light chain 3BHomo sapiens (human)
mitochondrionMicrotubule-associated proteins 1A/1B light chain 3BHomo sapiens (human)
autophagosomeMicrotubule-associated proteins 1A/1B light chain 3BHomo sapiens (human)
cytosolMicrotubule-associated proteins 1A/1B light chain 3BHomo sapiens (human)
microtubuleMicrotubule-associated proteins 1A/1B light chain 3BHomo sapiens (human)
axonemeMicrotubule-associated proteins 1A/1B light chain 3BHomo sapiens (human)
endomembrane systemMicrotubule-associated proteins 1A/1B light chain 3BHomo sapiens (human)
organelle membraneMicrotubule-associated proteins 1A/1B light chain 3BHomo sapiens (human)
cytoplasmic vesicleMicrotubule-associated proteins 1A/1B light chain 3BHomo sapiens (human)
mitochondrial membraneMicrotubule-associated proteins 1A/1B light chain 3BHomo sapiens (human)
intracellular membrane-bounded organelleMicrotubule-associated proteins 1A/1B light chain 3BHomo sapiens (human)
autophagosome membraneMicrotubule-associated proteins 1A/1B light chain 3BHomo sapiens (human)
autophagosome membraneMicrotubule-associated proteins 1A/1B light chain 3AHomo sapiens (human)
late endosomeMicrotubule-associated proteins 1A/1B light chain 3AHomo sapiens (human)
autophagosomeMicrotubule-associated proteins 1A/1B light chain 3AHomo sapiens (human)
cytosolMicrotubule-associated proteins 1A/1B light chain 3AHomo sapiens (human)
microtubuleMicrotubule-associated proteins 1A/1B light chain 3AHomo sapiens (human)
organelle membraneMicrotubule-associated proteins 1A/1B light chain 3AHomo sapiens (human)
intracellular membrane-bounded organelleMicrotubule-associated proteins 1A/1B light chain 3AHomo sapiens (human)
autolysosomeMicrotubule-associated proteins 1A/1B light chain 3AHomo sapiens (human)
glutamatergic synapseMicrotubule-associated proteins 1A/1B light chain 3AHomo sapiens (human)
autophagosome membraneMicrotubule-associated proteins 1A/1B light chain 3AHomo sapiens (human)
[Information is prepared from geneontology information from the June-17-2024 release]

Bioassays (6)

Assay IDTitleYearJournalArticle
AID1775856Binding affinity to recombinant LC3A (unknown origin) assessed as shift of melting temperature by differential scanning fluorimetry2021Journal of medicinal chemistry, 04-08, Volume: 64, Issue:7
Demonstrating Ligandability of the LC3A and LC3B Adapter Interface.
AID1775858Binding affinity to human LC3B expressed in Escherichia coli BL21-(DE3) by isothermal titration calorimetry2021Journal of medicinal chemistry, 04-08, Volume: 64, Issue:7
Demonstrating Ligandability of the LC3A and LC3B Adapter Interface.
AID1775857Displacement of sGFP-p62-LIR peptide from human N-terminal SNAP-fused LC3B by time-resolved FRET assay2021Journal of medicinal chemistry, 04-08, Volume: 64, Issue:7
Demonstrating Ligandability of the LC3A and LC3B Adapter Interface.
AID1775846Binding affinity to recombinant LC3B (unknown origin) assessed as shift of melting temperature by differential scanning fluorimetry2021Journal of medicinal chemistry, 04-08, Volume: 64, Issue:7
Demonstrating Ligandability of the LC3A and LC3B Adapter Interface.
AID1775854Displacement of sGFP-p62-LIR peptide from human N-terminal SNAP-fused LC3A by time-resolved FRET assay2021Journal of medicinal chemistry, 04-08, Volume: 64, Issue:7
Demonstrating Ligandability of the LC3A and LC3B Adapter Interface.
AID1775855Binding affinity to human LC3A expressed in Escherichia coli BL21-(DE3) by isothermal titration calorimetry2021Journal of medicinal chemistry, 04-08, Volume: 64, Issue:7
Demonstrating Ligandability of the LC3A and LC3B Adapter Interface.
[information is prepared from bioassay data collected from National Library of Medicine (NLM), extracted Dec-2023]

Research

Studies (7)

TimeframeStudies, This Drug (%)All Drugs %
pre-19904 (57.14)18.7374
1990's1 (14.29)18.2507
2000's1 (14.29)29.6817
2010's0 (0.00)24.3611
2020's1 (14.29)2.80
[information is prepared from research data collected from National Library of Medicine (NLM), extracted Dec-2023]

Market Indicators

Research Demand Index: 12.00

According to the monthly volume, diversity, and competition of internet searches for this compound, as well the volume and growth of publications, there is estimated to be weak demand-to-supply ratio for research on this compound.

MetricThis Compound (vs All)
Research Demand Index12.00 (24.57)
Research Supply Index2.20 (2.92)
Research Growth Index4.20 (4.65)
Search Engine Demand Index0.00 (26.88)
Search Engine Supply Index0.00 (0.95)

This Compound (12.00)

All Compounds (24.57)

Study Types

Publication TypeThis drug (%)All Drugs (%)
Trials0 (0.00%)5.53%
Reviews0 (0.00%)6.00%
Case Studies0 (0.00%)4.05%
Observational0 (0.00%)0.25%
Other8 (100.00%)84.16%
[information is prepared from research data collected from National Library of Medicine (NLM), extracted Dec-2023]