Page last updated: 2024-10-24

ceramide binding

Definition

Target type: molecularfunction

Binding to a ceramide, a class of lipids composed of sphingosine linked to a fatty acid. Ceramides are a major component of cell membranes. [GOC:sart]

Ceramide binding is a molecular function that involves the specific interaction of a protein with the ceramide molecule. Ceramide is a lipid that plays a critical role in various cellular processes, including cell signaling, apoptosis, and membrane organization. Ceramide binding proteins typically contain specific domains or motifs that enable them to recognize and bind to the ceramide molecule. These domains often exhibit hydrophobic characteristics that allow them to interact with the hydrophobic tail of ceramide. The binding of ceramide to its receptor protein can trigger a cascade of downstream signaling events, leading to the activation of specific cellular responses. For example, ceramide binding can activate protein kinases, phosphatases, and other signaling molecules, ultimately influencing processes such as cell survival, proliferation, and differentiation. In addition to its role in cell signaling, ceramide binding can also contribute to the formation and regulation of lipid rafts, which are specialized microdomains in the cell membrane that play a role in membrane trafficking and signal transduction. Ceramide binding proteins can act as scaffolding molecules, bringing together other proteins and lipids within lipid rafts to facilitate specific cellular processes. Overall, ceramide binding is a complex molecular function that plays a vital role in a wide range of cellular events. It involves the specific interaction of proteins with ceramide, leading to the activation of signaling pathways and the regulation of membrane organization. These processes are essential for maintaining cellular homeostasis and responding to various stimuli.'
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Proteins (2)

ProteinDefinitionTaxonomy
Microtubule-associated proteins 1A/1B light chain 3BA microtubule-associated proteins 1A/1B light chain 3B that is encoded in the genome of human. [PRO:DNx, UniProtKB:Q9GZQ8]Homo sapiens (human)
Voltage-dependent anion-selective channel protein 2A voltage-dependent anion-selective channel protein 2 that is encoded in the genome of human. [PRO:DNx, UniProtKB:P45880]Homo sapiens (human)

Compounds (3)

CompoundDefinitionClassesRoles
erastinerastin : A member of the class of quinazolines that is quinazolin-4(3H)-one in which the hydrogens at positions 2 and 3 are replaced by 1-{4-[(4-chlorophenoxy)acetyl]piperazin-1-yl}ethyl and 2-ethoxyphenyl groups, respectively. It is an inhibitor of voltage-dependent anion-selective channels (VDAC2 and VDAC3) and a potent ferroptosis inducer.

erastin: an antineoplastic agent; structure in first source
aromatic ether;
diether;
monochlorobenzenes;
N-acylpiperazine;
N-alkylpiperazine;
quinazolines;
tertiary carboxamide
antineoplastic agent;
ferroptosis inducer;
voltage-dependent anion channel inhibitor
novobiocinnovobiocin : A coumarin-derived antibiotic obtained from Streptomyces niveus.

Novobiocin: An antibiotic compound derived from Streptomyces niveus. It has a chemical structure similar to coumarin. Novobiocin binds to DNA gyrase, and blocks adenosine triphosphatase (ATPase) activity. (From Reynolds, Martindale The Extra Pharmacopoeia, 30th ed, p189)
carbamate ester;
ether;
hexoside;
hydroxycoumarin;
monocarboxylic acid amide;
monosaccharide derivative;
phenols
antibacterial agent;
antimicrobial agent;
EC 5.99.1.3 [DNA topoisomerase (ATP-hydrolysing)] inhibitor;
Escherichia coli metabolite;
hepatoprotective agent
dihydronovobiocindihydronovobiocin: high affinity for DNA gyrase B; structure given