Page last updated: 2024-08-07 16:41:17

Collagenase 3

A collagenase 3 that is encoded in the genome of human. [PRO:DNx, UniProtKB:P45452]

Synonyms

EC 3.4.24.-;
Matrix metalloproteinase-13;
MMP-13

Research

Bioassay Publications (58)

TimeframeStudies on this Protein(%)All Drugs %
pre-19900 (0.00)18.7374
1990's3 (5.17)18.2507
2000's39 (67.24)29.6817
2010's12 (20.69)24.3611
2020's4 (6.90)2.80

Compounds (44)

Drugs with Inhibition Measurements

DrugTaxonomyMeasurementAverage (mM)Bioassay(s)Publication(s)
pimagedineHomo sapiens (human)IC5072.000011
N-[4-(4-morpholinyl)butyl]-2-benzofurancarboxamideHomo sapiens (human)IC5010.000011
way 151693Homo sapiens (human)IC500.009756
nafamostatHomo sapiens (human)IC50420.000011
ng-nitroarginine methyl esterHomo sapiens (human)IC502.700011
piloty's acidHomo sapiens (human)Ki83.000011
marimastatHomo sapiens (human)IC500.016299
sr 27897Homo sapiens (human)IC500.000611
n-(2-isobutyl-3-(n'-hydroxycarbonylamido)propanoyl)-o-methyltyrosinemethylamideHomo sapiens (human)IC500.001010
ilomastatHomo sapiens (human)IC500.003633
omega-n-methylarginineHomo sapiens (human)IC500.300011
2-(4-aminophenyl)benzothiazoleHomo sapiens (human)IC50100.000011
taxifolinHomo sapiens (human)IC5034.600011
devazepideHomo sapiens (human)Ki0.001811
cgs 27023aHomo sapiens (human)IC500.021024
cgs 27023aHomo sapiens (human)Ki0.001311
prinomastatHomo sapiens (human)IC500.000855
prinomastatHomo sapiens (human)Ki0.000022
isoliquiritigeninHomo sapiens (human)IC500.014011
2-[(4-phenylphenyl)sulfonylamino]pentanedioic acidHomo sapiens (human)IC505.126733
n(6)-(1-iminoethyl)lysineHomo sapiens (human)IC502.400011
4-oxido-3-(4-phenoxyphenyl)-4a,5,6,7,8,8a-hexahydroquinoxalin-1-ium 1-oxideHomo sapiens (human)IC506.800011
rs-130830Homo sapiens (human)IC500.0367911
rs-130830Homo sapiens (human)Ki0.0823510
quercetinHomo sapiens (human)IC508.460011
luteolinHomo sapiens (human)IC5010.050011
tmi-1Homo sapiens (human)IC500.0088511
batimastatHomo sapiens (human)IC500.005011
isoacteosideHomo sapiens (human)IC5011.090011
Methyl rosmarinateHomo sapiens (human)IC5029.030011
ik 682Homo sapiens (human)IC501.417011
ik 682Homo sapiens (human)Ki1.417033
bay 12-9566Homo sapiens (human)Ki1.470011
(11c)cgs 25966Homo sapiens (human)IC500.006011
ro 32-3555Homo sapiens (human)IC500.017246
ro 32-3555Homo sapiens (human)Ki0.001344
pd 166793Homo sapiens (human)IC500.008022
sc 78080Homo sapiens (human)IC500.000122
2-[[4-(4-bromophenyl)phenyl]sulfonylamino]-3-methylbutanoic acidHomo sapiens (human)IC500.000011
arp-100Homo sapiens (human)IC500.035022
arp-100Homo sapiens (human)Ki0.020011
N(2)-([biphenyl]-4-ylsulfonyl)-N-hydroxy-N(2)-isopropoxy-D-valinamideHomo sapiens (human)IC500.004111
bms-566394Homo sapiens (human)IC504.000712
bms-566394Homo sapiens (human)Ki10.000022
apratastatHomo sapiens (human)IC500.008011
grassystatin aHomo sapiens (human)IC505.000011
tetracyclineHomo sapiens (human)IC50180.000011
2-[(4-chlorophenyl)methylthio]-1,5,6,7-tetrahydrocyclopenta[d]pyrimidin-4-oneHomo sapiens (human)IC503.824055
2-[(4-chlorophenyl)methylthio]-1,5,6,7-tetrahydrocyclopenta[d]pyrimidin-4-oneHomo sapiens (human)Ki3.800011
2-[(4-methoxyphenyl)methylthio]-6-methyl-1H-pyrimidin-4-oneHomo sapiens (human)IC508.633333
4-[[(4-oxo-1,5,6,7-tetrahydrocyclopenta[d]pyrimidin-2-yl)thio]methyl]benzoic acid methyl esterHomo sapiens (human)IC502.550022
4-[[(4-oxo-1,5,6,7-tetrahydrocyclopenta[d]pyrimidin-2-yl)thio]methyl]benzoic acid methyl esterHomo sapiens (human)Ki1.526011

Drugs with Other Measurements

DrugTaxonomyMeasurementAverage (mM)Bioassay(s)Publication(s)
acetohydroxamic acidHomo sapiens (human)Kb1.200011
marimastatHomo sapiens (human)Activity0.002011
prinomastatHomo sapiens (human)Activity0.000511
rs-130830Homo sapiens (human)Activity0.000611
2-[(4-chlorophenyl)methylthio]-1,5,6,7-tetrahydrocyclopenta[d]pyrimidin-4-oneHomo sapiens (human)Kb3.300011
4-[[(4-oxo-1,5,6,7-tetrahydrocyclopenta[d]pyrimidin-2-yl)thio]methyl]benzoic acid methyl esterHomo sapiens (human)Kb1.500011

Enables

This protein enables 6 target(s):

TargetCategoryDefinition
endopeptidase activitymolecular functionCatalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain. [http://merops.sanger.ac.uk/about/glossary.htm#ENDOPEPTIDASE]
metalloendopeptidase activitymolecular functionCatalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions. [GOC:mah, https://www.ebi.ac.uk/merops/about/glossary.shtml#CATTYPE, https://www.ebi.ac.uk/merops/about/glossary.shtml#ENDOPEPTIDASE]
serine-type endopeptidase activitymolecular functionCatalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine). [GOC:mah, https://www.ebi.ac.uk/merops/about/glossary.shtml#CATTYPE]
calcium ion bindingmolecular functionBinding to a calcium ion (Ca2+). [GOC:ai]
collagen bindingmolecular functionBinding to collagen, a group of fibrous proteins of very high tensile strength that form the main component of connective tissue in animals. Collagen is highly enriched in glycine (some regions are 33% glycine) and proline, occurring predominantly as 3-hydroxyproline (about 20%). [GOC:ai, ISBN:0198506732]
zinc ion bindingmolecular functionBinding to a zinc ion (Zn). [GOC:ai]

Located In

This protein is located in 2 target(s):

TargetCategoryDefinition
extracellular regioncellular componentThe space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite. [GOC:go_curators]
extracellular matrixcellular componentA structure lying external to one or more cells, which provides structural support, biochemical or biomechanical cues for cells or tissues. [GOC:BHF, GOC:mah, GOC:rph, NIF_Subcellular:nlx_subcell_20090513, PMID:21123617, PMID:28089324]

Active In

This protein is active in 1 target(s):

TargetCategoryDefinition
extracellular spacecellular componentThat part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid. [ISBN:0198547684]

Involved In

This protein is involved in 9 target(s):

TargetCategoryDefinition
endochondral ossificationbiological processReplacement ossification wherein bone tissue replaces cartilage. [GO_REF:0000034, ISBN:0878932437]
growth plate cartilage developmentbiological processThe process whose specific outcome is the progression of the cartilage that will provide a scaffold for mineralization of endochondral bones as they elongate or grow. [GOC:ascb_2009, GOC:dph, GOC:tb]
proteolysisbiological processThe hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. [GOC:bf, GOC:mah]
extracellular matrix disassemblybiological processA process that results in the breakdown of the extracellular matrix. [GOC:jid]
bone mineralizationbiological processThe deposition of hydroxyapatite, a form of calcium phosphate with the formula Ca10(PO4)6(OH)2, in bone tissue. [GOC:mah, PMID:22936354]
collagen catabolic processbiological processThe proteolytic chemical reactions and pathways resulting in the breakdown of collagen in the extracellular matrix, usually carried out by proteases secreted by nearby cells. [GOC:mah, ISBN:0815316194]
bone morphogenesisbiological processThe process in which bones are generated and organized. [GOC:dph]
response to amyloid-betabiological processAny process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a amyloid-beta stimulus. [GO_REF:0000071, GOC:TermGenie, PMID:23555824]
extracellular matrix organizationbiological processA process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of an extracellular matrix. [GOC:mah]