Page last updated: 2024-10-24

extracellular matrix protein binding

Definition

Target type: molecularfunction

Binding to a protein that is part of an extracellular matrix. [PMID:22355679]

Extracellular matrix protein binding is a molecular function that involves the interaction of proteins with components of the extracellular matrix (ECM). The ECM is a complex network of macromolecules that provides structural support, regulates cell behavior, and facilitates tissue homeostasis.

Extracellular matrix protein binding is crucial for a wide range of biological processes, including:

* **Cell adhesion and migration:** Cells adhere to the ECM through specific interactions with ECM proteins, such as fibronectin, laminin, and collagen. These interactions provide anchorage and allow cells to move and migrate through tissues.
* **Signal transduction:** ECM proteins can act as signaling molecules, transmitting information from the extracellular environment to the intracellular space. This signaling can influence cell growth, differentiation, and survival.
* **Tissue development and repair:** ECM protein binding plays a critical role in tissue morphogenesis, wound healing, and regeneration.
* **Disease pathogenesis:** Dysregulation of ECM protein binding can contribute to a variety of diseases, including cancer, fibrosis, and arthritis.

The molecular mechanisms underlying ECM protein binding are diverse and involve a combination of electrostatic interactions, hydrogen bonding, hydrophobic interactions, and van der Waals forces. Specific protein domains, such as the integrin-binding domains, collagen-binding domains, and laminin-binding domains, mediate these interactions.

Extracellular matrix protein binding is a highly regulated process, influenced by factors such as cell type, developmental stage, and environmental cues. Understanding the molecular details of ECM protein binding is essential for developing new therapies for a variety of diseases.'
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Proteins (2)

ProteinDefinitionTaxonomy
Gamma-aminobutyric acid type B receptor subunit 1A gamma-aminobutyric acid type B receptor subunit 1 that is encoded in the genome of human. [PRO:DNx, UniProtKB:Q9UBS5]Homo sapiens (human)
Integrin alpha-V An integrin alpha-V that is encoded in the genome of human. [PRO:DNx, UniProtKB:P06756]Homo sapiens (human)

Compounds (35)

CompoundDefinitionClassesRoles
gamma-aminobutyric acidgamma-aminobutyric acid : A gamma-amino acid that is butanoic acid with the amino substituent located at C-4.

gamma-Aminobutyric Acid: The most common inhibitory neurotransmitter in the central nervous system.
amino acid zwitterion;
gamma-amino acid;
monocarboxylic acid
human metabolite;
neurotransmitter;
Saccharomyces cerevisiae metabolite;
signalling molecule
1-(3-chlorophenyl)biguanide1-(3-chlorophenyl)biguanide: RN given refers to parent cp; a 5-HT3 receptor agonistbiguanides;
monochlorobenzenes
baclofenamino acid zwitterion;
gamma-amino acid;
monocarboxylic acid;
monochlorobenzenes;
primary amino compound
central nervous system depressant;
GABA agonist;
muscle relaxant
phenyl biguanidephenyl biguanide : A member of the class of biguanides that is biguanide in which one of the terminal nitrogen atoms is substituted by a phenyl group.

phenyl biguanide: RN given refers to parent cpd
guanidinescentral nervous system drug
(1,2,5,6-tetrahydropyridin-4-yl)methylphosphinic acid(1,2,5,6-tetrahydropyridin-4-yl)methylphosphinic acid: a GABA-C receptor antagonist; structure in first source
vigabatringamma-amino acidanticonvulsant;
EC 2.6.1.19 (4-aminobutyrate--2-oxoglutarate transaminase) inhibitor
4-amino-3-phenylbutyric acid4-amino-3-phenylbutyric acid: phenyl deriv of GABA; RN given refers to cpd without isomeric designation; structureorganonitrogen compound;
organooxygen compound
4-chlorophenylbiguanide
paclitaxelTaxus: Genus of coniferous yew trees or shrubs, several species of which have medicinal uses. Notable is the Pacific yew, Taxus brevifolia, which is used to make the anti-neoplastic drug taxol (PACLITAXEL).taxane diterpenoid;
tetracyclic diterpenoid
antineoplastic agent;
human metabolite;
metabolite;
microtubule-stabilising agent
Arbaclofenorganonitrogen compound;
organooxygen compound
tirofibantirofiban : A member of the class of piperidines that is L-tyrosine in which a hydrogen attached to the amino group is replaced by a butylsulfonyl group and in which the hydrogen attached to the phenolic hydroxy group is replaced by a 4-(piperidin-4-yl)butyl group.

Tirofiban: Tyrosine analog and PLATELET GLYCOPROTEIN GPIIB-IIIA COMPLEX antagonist that inhibits PLATELET AGGREGATION and is used in the treatment of ACUTE CORONARY SYNDROME.
L-tyrosine derivative;
piperidines;
sulfonamide
anticoagulant;
fibrin modulating drug;
platelet glycoprotein-IIb/IIIa receptor antagonist
25-hydroxycholesterol25-hydroxy steroid;
oxysterol
human metabolite
tetraiodothyroacetic acid3,3',5,5'-tetraiodothyroacetic acid : A monocarboxylic acid that is thyroacetic acid carrying four iodo substituents at positions 3, 3', 5 and 5'.

tetraiodothyroacetic acid: RN given refers to parent cpd; structure
2-halophenol;
aromatic ether;
iodophenol;
monocarboxylic acid
apoptosis inducer;
human metabolite;
thyroid hormone
arginyl-glycyl-aspartic acidarginyl-glycyl-aspartic acid: amino acid sequence of basic unit of widespread cellular recognition systemoligopeptide
glycyl-arginyl-glycyl-aspartyl-serineglycyl-arginyl-glycyl-aspartyl-serine: synthetic peptide from fibronectins; inhibits experimental metastasis of murine melanoma cells
4-amino-3-(5-chloro-2-thienyl)butyric acid4-amino-3-(5-chloro-2-thienyl)butyric acid: binds GABA receptors; RN & structure given in first source
alpha-ethyl, alpha-methyl-thiobutyrolactonetetrahydrothiophenes
cgp 36742(3-aminopropyl)(n-butyl)phosphinic acid: interacts preferably with GABA-B RECEPTORS (IC50=38 μM) and GABA-C receptors (IC50=62 μM) over GABA-A RECEPTORS (IC50=508 μM)
glycyl- arginyl-glycyl-aspartyl-seryl-prolyl-lysine
alpha-isopropyl-alpha-methyl-gamma-butyrolactonealpha-isopropyl-alpha-methyl-gamma-butyrolactone: structure given in first source; picrotoxin receptor antagonist
d-arg-gly-asp-trparginyl-glycyl-aspartyl-tryptophan: a synthetic RGD-containing peptide
l 738167L 738167: structure in first source
sk&f 107260SK&F 107260: structure given in first source
cilengitideCilengitide: an alphaVbeta3 integrin antagonist that paralyzes cancer cellsoligopeptide
l 734217L 734217: fibrinogen receptor antagonist; structure given in first source
elarofibanelarofiban: a GPIIb and GPIIIa receptor antagonist; structure in first source
eptifibatidehomodetic cyclic peptide;
macrocycle;
organic disulfide
anticoagulant;
platelet aggregation inhibitor
arginyl-glycyl-aspartyl-phenylalanine
(r,s)-5,7-di-tert-butyl-3-hydroxy-3-trifluoromethyl-3h-benzofuran-2-one(R,S)-5,7-di-tert-butyl-3-hydroxy-3-trifluoromethyl-3H-benzofuran-2-one: a positive allosteric modulator of GABAB receptors; structure in first source
cgp 79302,6-di-tert-butyl-4-(3-hydroxy-2,2-dimethylpropyl)phenol: structure in first sourcealkylbenzene
n,n'-dicyclopentyl-2-methylsulfanyl-5-nitro-pyrimidine-4,6-diamineN,N'-dicyclopentyl-2-methylsulfanyl-5-nitro-pyrimidine-4,6-diamine: structure in first sourcearyl sulfide
sb 223245
cyclic(arg-gly-asp-d-phe-val)
mk-0429
sb 273005