Page last updated: 2024-10-24

cytoskeletal protein binding

Definition

Target type: molecularfunction

Binding to a protein component of a cytoskeleton (actin, microtubule, or intermediate filament cytoskeleton). [GOC:mah]

Cytoskeletal protein binding is a molecular function that describes the ability of proteins to interact with components of the cytoskeleton. The cytoskeleton is a complex network of protein filaments that provides structural support, shape, and motility to cells. It is composed of three major types of filaments: microtubules, microfilaments (actin filaments), and intermediate filaments.

Cytoskeletal protein binding proteins can interact with these filaments in a variety of ways, including:

* **Direct binding:** Some proteins bind directly to the surface of cytoskeletal filaments, often through specific protein domains. For example, the motor protein kinesin binds to microtubules and uses ATP hydrolysis to move cargo along the filament.
* **Indirect binding:** Other proteins bind indirectly to cytoskeletal filaments through intermediary proteins. For example, some adaptor proteins link cytoskeletal filaments to other cellular structures, such as the plasma membrane or organelles.
* **Regulation of assembly and disassembly:** Some proteins can regulate the assembly and disassembly of cytoskeletal filaments. For example, the protein actin-depolymerizing factor (ADF) promotes the disassembly of actin filaments.

Cytoskeletal protein binding is essential for a wide range of cellular processes, including:

* **Cell shape and organization:** The cytoskeleton provides structural support to cells and helps to maintain their shape.
* **Cell motility:** The cytoskeleton is involved in cell movement, including crawling, swimming, and gliding.
* **Intracellular transport:** The cytoskeleton acts as a network of tracks for the transport of organelles, vesicles, and other cellular components.
* **Signal transduction:** The cytoskeleton can be involved in signal transduction pathways, transmitting signals from the cell surface to the interior of the cell.

The specific function of a cytoskeletal protein binding protein depends on its binding partners and its interactions with other cellular components. These interactions can be regulated by a variety of factors, including phosphorylation, ubiquitination, and other post-translational modifications.

In summary, cytoskeletal protein binding is a fundamental molecular function that plays a crucial role in a wide range of cellular processes.'
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Proteins (4)

ProteinDefinitionTaxonomy
Dual specificity protein phosphatase 3A dual specificity protein phosphatase 3 that is encoded in the genome of human. [PRO:DNx, UniProtKB:P51452]Homo sapiens (human)
Calpain-2 catalytic subunitA calpain-2 catalytic subunit that is encoded in the genome of human. [PRO:DNx, UniProtKB:P17655]Homo sapiens (human)
Annexin A2An annexin A2 that is encoded in the genome of human. [PRO:DNx, UniProtKB:P07355]Homo sapiens (human)
Fatty acid-binding protein, heartA fatty acid-binding protein, heart that is encoded in the genome of human. [PRO:DNx, UniProtKB:P05413]Homo sapiens (human)

Compounds (25)

CompoundDefinitionClassesRoles
celecoxiborganofluorine compound;
pyrazoles;
sulfonamide;
toluenes
cyclooxygenase 2 inhibitor;
geroprotector;
non-narcotic analgesic;
non-steroidal anti-inflammatory drug
rofecoxibbutenolide;
sulfone
analgesic;
cyclooxygenase 2 inhibitor;
non-steroidal anti-inflammatory drug
imperatorinimperatorin : A member of the class of psoralens that is psoralen substituted by a prenyloxy group at position 8. Isolated from Angelica dahurica and Angelica koreana, it acts as a acetylcholinesterase inhibitor.

imperatorin: tumor necrosis factor antagonist; furanocoumarin from West African medicinal plant Clausena anisata; structure in Negwer, 5th ed, #3005
psoralensEC 3.1.1.7 (acetylcholinesterase) inhibitor;
metabolite
oleanolic acidhydroxy monocarboxylic acid;
pentacyclic triterpenoid
plant metabolite
truxillic acidtruxillic acid: RN given refers to cpd with unspecified isomeric designation; structure
rac-glycerol 1-monodecanoate1-monodecanoylglycerol : A 1-monoglyceride that has decanoyl (capryl) as the acyl group.

rac-1-monodecanoylglycerol : A rac-1-monoacylglycerol composed of equal amounts of 3-decanoyl-sn-glycerol and 1-decanoyl-sn-glycerol.

rac-glycerol 1-monodecanoate: a monoglyceride of capric acid
rac-1-monoacylglycerol
6,7-dichloroquinoline-5,8-dione6,7-dichloro-5,8-quinolinedione: structure in first source
nsc 663284NSC 663284: structure in first sourcequinolone
nsc668394
cocainecocaine : A tropane alkaloid obtained from leaves of the South American shrub Erythroxylon coca.

Cocaine: An alkaloid ester extracted from the leaves of plants including coca. It is a local anesthetic and vasoconstrictor and is clinically used for that purpose, particularly in the eye, ear, nose, and throat. It also has powerful central nervous system effects similar to the amphetamines and is a drug of abuse. Cocaine, like amphetamines, acts by multiple mechanisms on brain catecholaminergic neurons; the mechanism of its reinforcing effects is thought to involve inhibition of dopamine uptake.
benzoate ester;
methyl ester;
tertiary amino compound;
tropane alkaloid
adrenergic uptake inhibitor;
central nervous system stimulant;
dopamine uptake inhibitor;
environmental contaminant;
local anaesthetic;
mouse metabolite;
plant metabolite;
serotonin uptake inhibitor;
sodium channel blocker;
sympathomimetic agent;
vasoconstrictor agent;
xenobiotic
benzyloxycarbonylleucyl-leucyl-leucine aldehydebenzyloxycarbonylleucyl-leucyl-leucine aldehyde: proteasome inhibitor

N-benzyloxycarbonyl-L-leucyl-L-leucyl-L-leucinal : A tripeptide that is L-leucyl-L-leucyl-L-leucine in which the C-terminal carboxy group has been reduced to the corresponding aldehyde and the N-terminal amino group is protected as its benzyloxycarbonyl derivative.
amino aldehyde;
carbamate ester;
tripeptide
proteasome inhibitor
N-(3,4-dimethylphenyl)-2-[[5-[[(4,6-dimethyl-2-pyrimidinyl)thio]methyl]-4-(2-furanylmethyl)-1,2,4-triazol-3-yl]thio]acetamideanilide
cefsulodincefsulodin : A pyridinium-substituted semi-synthetic, broad-spectrum, cephalosporin antibiotic.

Cefsulodin: A pyridinium-substituted semisynthetic, broad-spectrum antibacterial used especially for Pseudomonas infections in debilitated patients.
cephalosporin;
organosulfonic acid;
primary carboxamide
antibacterial drug
caffeic acidtrans-caffeic acid : The trans-isomer of caffeic acid.caffeic acidgeroprotector;
mouse metabolite
illudalic acidilludalic acid: isolated from Clitocybe illudens; structure in first source
linoleic acidlinoleic acid : An octadecadienoic acid in which the two double bonds are at positions 9 and 12 and have Z (cis) stereochemistry.

Linoleic Acid: A doubly unsaturated fatty acid, occurring widely in plant glycosides. It is an essential fatty acid in mammalian nutrition and is used in the biosynthesis of prostaglandins and cell membranes. (From Stedman, 26th ed)
octadecadienoic acid;
omega-6 fatty acid
algal metabolite;
Daphnia galeata metabolite;
plant metabolite
benzyloxycarbonyl-phe-ala-fluormethylketonecathepsin B inhibitor : A cysteine protease inhibitor which inhibits cathepsin B (EC 3.4.22.1).
HTS 01037ring assembly;
thiophenes
stigmasterol 3-o-beta-d-glucopyranosidestigmasterol 3-O-beta-D-glucopyranoside: an antioxidant from Monochoria vaginalis; structure in first source

stigmasterol 3-O-beta-D-glucoside : A steroid saponin that is (3beta,22E)-stigmasta-5,22-dien-3-ol attached to a beta-D-glucopyranosyl residue at position 3 via a glycosidic linkage. It is isolated from Symplocos lancifolia.
beta-D-glucoside;
monosaccharide derivative;
phytosterols;
steroid saponin
metabolite
ca 074
calpain inhibitor iiicalpain inhibitor III: potential anticataract drug
bms 309403
3-(1-(3-(biphenyl-4-ylamino)-3-oxopropyl)-1h-1,2,3-triazol-4-yl)-6-hydroxy-1-methyl-2-phenyl-1h-indole-5-carboxylic acid3-(1-(3-(biphenyl-4-ylamino)-3-oxopropyl)-1H-1,2,3-triazol-4-yl)-6-hydroxy-1-methyl-2-phenyl-1H-indole-5-carboxylic acid: an SHP2 inhibitor; structure in first source
rk 682
variabilinvariabilin: an RGD-containing antagonist of glycoprotein IIb-IIIa from the hard tick, Dermacentor variabilis; amino acid sequence given in first source