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regulation of type II interferon-mediated signaling pathway

Definition

Target type: biologicalprocess

Any process that modulates the rate, frequency or extent of an interferon-gamma-mediated signaling pathway. [GOC:dph]

Type II interferon (IFN-γ) signaling is a crucial component of the innate and adaptive immune response, orchestrating a complex cascade of events to combat intracellular pathogens. The pathway is initiated when IFN-γ binds to its receptor, IFNGR, which is a heterodimer composed of IFNGR1 and IFNGR2 chains. This binding event triggers a series of intracellular signaling events, culminating in the activation of transcription factors, primarily STAT1 and STAT2, that ultimately drive the expression of interferon-stimulated genes (ISGs).

The engagement of IFN-γ with IFNGR leads to the phosphorylation of tyrosine residues within the cytoplasmic tails of both IFNGR1 and IFNGR2. This phosphorylation event creates docking sites for the Janus kinase (JAK) family members, JAK1 and JAK2. These kinases are constitutively associated with IFNGR1 and IFNGR2, respectively. Upon ligand binding, JAK1 and JAK2 become activated and phosphorylate each other, initiating a positive feedback loop that amplifies the signal.

The activated JAKs then phosphorylate the tyrosine residues within the cytoplasmic tails of IFNGR1 and IFNGR2, creating docking sites for the signal transducer and activator of transcription (STAT) proteins, specifically STAT1 and STAT2. These STATs, along with the transcription factor IRF9, form a trimeric complex known as the interferon-stimulated gene factor 3 (ISGF3). The ISGF3 complex translocates to the nucleus, where it binds to specific DNA sequences known as interferon-stimulated response elements (ISREs) within the promoter regions of ISGs.

This binding event results in the transcriptional activation of a multitude of ISGs, which encode proteins with diverse antiviral and immunomodulatory functions. These proteins include:

- **Antiviral effectors:** These proteins directly target viral replication, such as protein kinase R (PKR), 2',5'-oligoadenylate synthetase (OAS), and Mx proteins.
- **Immunomodulatory proteins:** These proteins contribute to the immune response by regulating immune cell activation, differentiation, and migration. Examples include MHC class I and II molecules, chemokines, and cytokines.

The regulation of type II interferon-mediated signaling pathway is a complex process involving multiple feedback mechanisms and regulatory proteins. These mechanisms ensure that the signaling pathway is tightly controlled and activated only when necessary.

- **Negative regulation:** The signaling pathway is downregulated by several mechanisms, including:
- **Suppression of JAK activity:** The protein tyrosine phosphatases (PTPs) and SH2-domain containing protein tyrosine phosphatase (SHP2) can dephosphorylate and inactivate JAKs, reducing signaling.
- **Inhibition of STAT activation:** The suppressor of cytokine signaling (SOCS) proteins can bind to phosphorylated JAKs and prevent STAT activation.
- **Ubiquitination and degradation of signaling proteins:** Ubiquitin ligases target signaling proteins for degradation, limiting signal duration.

- **Positive feedback loops:** The pathway also utilizes positive feedback loops to amplify the signal, including:
- **Autophosphorylation of JAKs:** Activated JAKs can phosphorylate and activate other JAK molecules, amplifying the signal.
- **Induction of IFN-γ production:** ISGs can induce the production of additional IFN-γ, further amplifying the response.

In summary, the regulation of type II interferon-mediated signaling pathway is a complex and tightly controlled process. This pathway plays a critical role in antiviral immunity, immune cell regulation, and inflammation. Dysregulation of this pathway can contribute to various diseases, including autoimmune disorders and cancer. Understanding the intricate mechanisms that govern this pathway is essential for developing new therapeutic strategies to modulate immune responses in various disease contexts.'
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Proteins (2)

ProteinDefinitionTaxonomy
Tyrosine-protein phosphatase non-receptor type 2A tyrosine-protein phosphatase non-receptor type 2 that is encoded in the genome of human. [PRO:DNx, UniProtKB:P17706]Homo sapiens (human)
Tyrosine-protein phosphatase non-receptor type 2A tyrosine-protein phosphatase non-receptor type 2 that is encoded in the genome of human. [PRO:DNx, UniProtKB:P17706]Homo sapiens (human)

Compounds (30)

CompoundDefinitionClassesRoles
5-iodo-2-(oxaloamino)benzoic acidorganoiodine compound
lithocholic acidlithocholate : A bile acid anion that is the conjugate base of lithocholic acid.

lithocholic acid : A monohydroxy-5beta-cholanic acid with a alpha-hydroxy substituent at position 3. It is a bile acid obtained from chenodeoxycholic acid by bacterial action.

Lithocholic Acid: A bile acid formed from chenodeoxycholate by bacterial action, usually conjugated with glycine or taurine. It acts as a detergent to solubilize fats for absorption and is itself absorbed. It is used as cholagogue and choleretic.
bile acid;
C24-steroid;
monohydroxy-5beta-cholanic acid
geroprotector;
human metabolite;
mouse metabolite
glycyrrhetinic acidcyclic terpene ketone;
hydroxy monocarboxylic acid;
pentacyclic triterpenoid
immunomodulator;
plant metabolite
oleanolic acidhydroxy monocarboxylic acid;
pentacyclic triterpenoid
plant metabolite
vanadatesvanadate(3-) : A vanadium oxoanion that is a trianion with formula VO4 in which the vanadium is in the +5 oxidation state and is attached to four oxygen atoms.

Vanadates: Oxyvanadium ions in various states of oxidation. They act primarily as ion transport inhibitors due to their inhibition of Na(+)-, K(+)-, and Ca(+)-ATPase transport systems. They also have insulin-like action, positive inotropic action on cardiac ventricular muscle, and other metabolic effects.
trivalent inorganic anion;
vanadium oxoanion
EC 3.1.3.1 (alkaline phosphatase) inhibitor;
EC 3.1.3.16 (phosphoprotein phosphatase) inhibitor;
EC 3.1.3.41 (4-nitrophenylphosphatase) inhibitor;
EC 3.1.3.48 (protein-tyrosine-phosphatase) inhibitor
ursolic acidhydroxy monocarboxylic acid;
pentacyclic triterpenoid
geroprotector;
plant metabolite
madecassic acidmonocarboxylic acid;
pentacyclic triterpenoid;
tetrol
antioxidant;
plant metabolite
maslinic acid(2Alpha,3beta)-2,3-dihydroxyolean-12-en-28-oic acid: from Luehea divaricata and Agrimonia eupatoriadihydroxy monocarboxylic acid;
pentacyclic triterpenoid
anti-inflammatory agent;
antineoplastic agent;
antioxidant;
plant metabolite
geniposideterpene glycoside
asiatic acidmonocarboxylic acid;
pentacyclic triterpenoid;
triol
angiogenesis modulating agent;
metabolite
celastrolmonocarboxylic acid;
pentacyclic triterpenoid
anti-inflammatory drug;
antineoplastic agent;
antioxidant;
EC 5.99.1.3 [DNA topoisomerase (ATP-hydrolysing)] inhibitor;
Hsp90 inhibitor;
metabolite
cryptotanshinonecryptotanshinone: from Salvia miltiorrhizaabietane diterpenoidanticoronaviral agent
boswellic acidboswellic acid: ursane type; RN given refers to (3alpha,4beta)-isomer; active principle of salai guggal; see also record for salai guggaltriterpenoid
procurcumenolprocurcumenol: RN given for (1S-(1alpha,3abeta,8aalpha))-isomer; epiprocurcumenol is the (1S-(1alpha,3aalpha,8aalpha))-isomer; a TNF-alpha antagonist isolated from Curcuma zedoaria; structure in first sourcesesquiterpenoid
pinocembrin
genipiniridoid monoterpenoidanti-inflammatory agent;
antioxidant;
apoptosis inhibitor;
cross-linking reagent;
hepatotoxic agent;
uncoupling protein inhibitor
2-(oxaloamino)benzoic acid(oxaloamino)benzoic acid
chlorogenic acidcaffeoylquinic acid: Antiviral Agent; structure in first source

chlorogenate : A monocarboxylic acid anion that is the conjugate base of chlorogenic acid; major species at pH 7.3.
cinnamate ester;
tannin
food component;
plant metabolite
tocopherylquinonetocopherylquinone: RN refers to (3R-(3R*,7R*,11R*))-isomer; structure
illudalic acidilludalic acid: isolated from Clitocybe illudens; structure in first source
eupatoriopicrinegermacranolide
2-amino-6-chloropurine6-chloroguanine : An organochlorine compound that is 7H-purin-2-amine substituted by a chloro group at position 6.

6-chloroguanine: an antimalarial that inhibits hypoxanthine-guanine-xanthine phosphoribosyltransferase; structure in first source
2-aminopurines;
organochlorine compound
corosolic acidtriterpenoidmetabolite
11-keto-boswellic acid
3-epioleanolic acidtriterpenoidmetabolite
oleanonic acidoleanonic acid: structure in first source
zedoarondiolzedoarondiol: structure in first source
formylchromoneformylchromone: structure in first source
rk 682
variabilinvariabilin: an RGD-containing antagonist of glycoprotein IIb-IIIa from the hard tick, Dermacentor variabilis; amino acid sequence given in first source