Target type: biologicalprocess
The chemical reactions and pathways resulting in the breakdown of D-amino acids, the D-enantiomers of amino acids. [GOC:ai, GOC:jsg]
D-amino acid catabolic process is the metabolic pathway responsible for the breakdown of D-amino acids, which are stereoisomers of the more common L-amino acids. This process is essential for maintaining cellular homeostasis and preventing the accumulation of potentially toxic D-amino acids.
D-amino acids can arise from various sources, including:
* **Bacterial synthesis:** Many bacteria synthesize D-amino acids as part of their cell wall structure.
* **Enzymatic racemization:** L-amino acids can be converted to D-amino acids by enzymatic racemization, which occurs in various tissues and organs.
* **Dietary intake:** Small amounts of D-amino acids can be ingested through food, primarily from fermented foods like cheese and yogurt.
D-amino acid catabolism involves a series of enzymatic reactions that convert D-amino acids into L-amino acids or other metabolic intermediates. The key enzymes involved in this process are:
* **D-amino acid oxidase (DAO):** This enzyme catalyzes the oxidative deamination of D-amino acids, producing α-keto acids and ammonia. DAO is found primarily in the liver and kidneys.
* **D-amino acid transaminase (DAT):** DAT catalyzes the transfer of an amino group from a D-amino acid to an α-keto acid, producing an L-amino acid and a new α-keto acid. DAT is found in various tissues, including the brain, liver, and kidneys.
The products of D-amino acid catabolism, such as α-keto acids and L-amino acids, can be further metabolized through various metabolic pathways, ultimately generating energy or being used for biosynthesis.
D-amino acid catabolism is essential for maintaining cellular homeostasis by preventing the accumulation of D-amino acids, which can have detrimental effects on cell function. For example, high levels of D-serine have been implicated in neurotoxicity and the development of neurological disorders.
In addition to its role in cellular homeostasis, D-amino acid catabolism is also involved in various physiological processes, including:
* **Immune response:** D-amino acids play a role in the immune response by modulating the activity of immune cells.
* **Neurotransmission:** Some D-amino acids, such as D-serine and D-aspartate, act as neurotransmitters in the brain.
* **Bone metabolism:** D-amino acids are involved in the regulation of bone formation and resorption.
Overall, D-amino acid catabolism is a vital metabolic process that plays a crucial role in maintaining cellular homeostasis and regulating various physiological functions.'
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Protein | Definition | Taxonomy |
---|---|---|
D-aspartate oxidase | A D-aspartate oxidase that is encoded in the genome of cow. [OMA:P31228, PRO:DNx] | Bos taurus (cattle) |
D-aspartate oxidase | A D-aspartate oxidase that is encoded in the genome of human. [PRO:DNx, UniProtKB:Q99489] | Homo sapiens (human) |
D-amino-acid oxidase | A D-amino-acid oxidase that is encoded in the genome of human. [PRO:DNx, UniProtKB:P14920] | Homo sapiens (human) |
Compound | Definition | Classes | Roles |
---|---|---|---|
benzoic acid | aromatic carboxylic acid : Any carboxylic acid in which the carboxy group is directly bonded to an aromatic ring. benzoic acid : A compound comprising a benzene ring core carrying a carboxylic acid substituent. Benzoic Acid: A fungistatic compound that is widely used as a food preservative. It is conjugated to GLYCINE in the liver and excreted as hippuric acid. | benzoic acids | algal metabolite; antimicrobial food preservative; drug allergen; EC 1.13.11.33 (arachidonate 15-lipoxygenase) inhibitor; EC 3.1.1.3 (triacylglycerol lipase) inhibitor; human xenobiotic metabolite; plant metabolite |
malonic acid | dicarboxylic acid : Any carboxylic acid containing two carboxy groups. malonic acid : An alpha,omega-dicarboxylic acid in which the two carboxy groups are separated by a single methylene group. | alpha,omega-dicarboxylic acid | human metabolite |
niacin | Niacin: A water-soluble vitamin of the B complex occurring in various animal and plant tissues. It is required by the body for the formation of coenzymes NAD and NADP. It has PELLAGRA-curative, vasodilating, and antilipemic properties. nicotinic acid : A pyridinemonocarboxylic acid that is pyridine in which the hydrogen at position 3 is replaced by a carboxy group. vitamin B3 : Any member of a group of vitamers that belong to the chemical structural class called pyridines that exhibit biological activity against vitamin B3 deficiency. Vitamin B3 deficiency causes a condition known as pellagra whose symptoms include depression, dermatitis and diarrhea. The vitamers include nicotinic acid and nicotinamide (and their ionized and salt forms). | pyridine alkaloid; pyridinemonocarboxylic acid; vitamin B3 | antidote; antilipemic drug; EC 3.5.1.19 (nicotinamidase) inhibitor; Escherichia coli metabolite; human urinary metabolite; metabolite; mouse metabolite; plant metabolite; vasodilator agent |
kojic acid | 4-pyranones; enol; primary alcohol | Aspergillus metabolite; EC 1.10.3.1 (catechol oxidase) inhibitor; EC 1.10.3.2 (laccase) inhibitor; EC 1.13.11.24 (quercetin 2,3-dioxygenase) inhibitor; EC 1.14.18.1 (tyrosinase) inhibitor; EC 1.4.3.3 (D-amino-acid oxidase) inhibitor; NF-kappaB inhibitor; skin lightening agent | |
3-hydroxy-2-oxoindole | 3-hydroxyindolin-2-one : An oxindole that is 1,3-dihydro-2H-indol-2-one substituted by a hydroxy group at position 3. 3-hydroxyindolin-2-one: structure in first source | hydroxyindoles; oxindoles | |
thiophene-3-carboxylic acid | thiophene-3-carboxylic acid: structure in first source | ||
3-aminobenzoic acid | 3-aminobenzoic acid : An aminobenzoic acid carrying an amino group at position 3. 3-aminobenzoic acid: RN given refers to parent cpd | aminobenzoic acid | |
adrenalone | adrenalone: RN given refers to parent cpd | aromatic ketone | |
5-chlorosalicylic acid | 5-chlorosalicylic acid : A monohydroxybenzoic acid that is 2-hydroxybenzoic acid (salicylic acid) in which the hydrogen at position 5 is replaced by chlorine. 5-chlorosalicylic acid: major metabolite of meseclazone; RN given refers to parent cpd | chlorobenzoic acid; monochlorobenzenes; monohydroxybenzoic acid | |
5-methylpyrazole-3-carboxylic acid | 5-methyl-pyrazole-3-carboxylic acid : A memebr of the class of pyrazoles that is 1H-pyrazole with methyl and carboxylic acid group substituents at positions 5 and 3 respectively. 5-methylpyrazole-3-carboxylic acid: structure | monocarboxylic acid; pyrazoles | metabolite |
3-aminopyridine | |||
3,5-pyridinedicarboxylic acid | 3,5-pyridinedicarboxylic acid: structure in first source | pyridinedicarboxylic acid | |
thiophene-2-carboxylate | thiophene-2-carboxylic acid : A thiophenecarboxylic acid in which the carboxy group is located at position 2. | thiophenecarboxylic acid | |
2-hydroxy benzimidazole | 2-hydroxy benzimidazole: structure in first source | ||
2-pyrrolecarboxylic acid | 2-pyrrolecarboxylic acid: hypocalcemic action; structure pyrrole-2-carboxylic acid : A pyrrolecarboxylic acid that is 1H-pyrrole carrying a carboxy substituent at position 2. | pyrrolecarboxylic acid | plant metabolite |
3-hydroxypicolinic acid | monocarboxylic acid; monohydroxypyridine | MALDI matrix material | |
3-hydroxy-1-benzopyran-2-one | 3-hydroxycoumarin: Photoprotective from sea urchin gametes and embryonic cells; structure in first source hydroxycoumarin : Any coumarin carrying at least one hydroxy substituent. | hydroxycoumarin | |
oxiniacic acid | aromatic carboxylic acid; pyridines | ||
6-aminonicotinic acid | 6-aminonicotinic acid : An aminonicotinic acid in which the amino group is situated at position 6 of the pyridine ring. 6-aminonicotinic acid: RN given refers to parent cpd | aminonicotinic acid; aminopyridine; aromatic amine | metabolite |
2,3-dihydroxypyridine | 2,3-dihydroxypyridine: affects thyroid function pyridine-2,3-diol : A dihydroxypyridine in which the two hydroxy groups are located at positions 2 and 3. | dihydroxypyridine | |
5-hydroxynicotinic acid | aromatic carboxylic acid; pyridines | ||
5-fluorosalicylic acid | 5-fluorosalicylic acid: structure given in first source; product from action of alkaline phosphatase on 5-fluorosalicyl phosphate; forms highly fluorescent terbium ternary complex | ||
indole-2-carboxylic acid | indolyl carboxylic acid | ||
2-aminonicotinic acid | 2-aminonicotinic acid : An aminonicotinic acid in which the amino group is situated at position 2 of the pyridine ring. 2-aminonicotinic acid: structure in first source aminonicotinic acid : An aromatic amino acid that is nicotinic acid in which one of the hydrogens attached to the pyridine ring is replaced by an amino group. A 'closed class'. | aminonicotinic acid; aminopyridine | metabolite |
3-aminopicolinic acid | |||
5-bromonicotinic acid | 5-bromonicotinic acid: structure given in first source | ||
5-fluoro-3-pyridinecarboxylic acid | |||
5-aminonicotinic acid | 5-aminonicotinic acid : An aminonicotinic acid in which the amino group is situated at position 5 of the pyridine ring. 5-aminonicotinic acid: an inhibitor of D-aspartate oxidase; structure in first source | aminonicotinic acid; aminopyridine; aromatic amine | metabolite |
crotonic acid | butenoic acid : Any C4, straight-chain fatty acid containing one double bond. crotonic acid : A but-2-enoic acid with a trans- double bond at C-2. It has been isolated from Daucus carota. crotonic acid: a stereospecific unsaturated carboxylic acid found in CROTON OIL | 2-butenoic acid | plant metabolite |
3-coumaric acid | 3-coumaric acid : A monohydroxycinnamic acid in which the hydroxy substituent is located at C-3 of the phenyl ring. 3-coumaric acid: RN given refers to cpd without isomeric designation in Chemline trans-3-coumaric acid : A 3-coumaric acid that is phenol substituted with trans-2-propenoic acid at position C-3. | 3-coumaric acid | |
pseudoginsenoside f11 | |||
3-hydroxyquinolin-2(1h)-one | 3-hydroxyquinolin-2(1H)-one: structure in first source dihydroxyquinoline : Any hydroxyquinoline in which the number of hydroxy substituents is specified as two. | hydroxyquinoline; quinolone | |
6-Chlorobenzo[d]isoxazol-3-ol | benzisoxazole | ||
ceftriaxone | 1,2,4-triazines; 1,3-thiazoles; cephalosporin; oxime O-ether | antibacterial drug; drug allergen; EC 3.5.2.6 (beta-lactamase) inhibitor | |
mofegiline | |||
sun |