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amino acid metabolic process

Definition

Target type: biologicalprocess

The chemical reactions and pathways involving amino acids, carboxylic acids containing one or more amino groups. [ISBN:0198506732]

Amino acid metabolism is a fundamental biological process that encompasses the synthesis, degradation, and interconversion of amino acids. These organic molecules play critical roles in various cellular functions, including protein synthesis, enzyme activity, and signaling pathways.

**Amino Acid Synthesis:**

* **De novo synthesis:** Organisms can synthesize certain amino acids from simpler precursors, such as carbohydrates, lipids, and nitrogenous compounds. This process often involves complex enzymatic pathways that require energy and specific cofactors.
* **Essential amino acids:** Some amino acids cannot be synthesized by the organism and must be obtained from the diet. These are referred to as essential amino acids.

**Amino Acid Degradation:**

* **Catabolism:** When amino acids are not needed for protein synthesis, they can be broken down into smaller molecules, releasing energy and providing intermediates for other metabolic pathways.
* **Transamination and Deamination:** The first step in amino acid degradation often involves transamination, where the amino group is transferred to a keto acid. Deamination removes the amino group as ammonia, which is then excreted or incorporated into other molecules.
* **Urea Cycle:** In mammals, the excess ammonia produced during amino acid degradation is converted into urea in the liver and excreted in the urine.

**Amino Acid Interconversion:**

* **Metabolic interconversion:** Different amino acids can be converted into each other through a series of enzymatic reactions. These conversions are essential for maintaining the balance of amino acids in the body.

**Specific Examples:**

* **Gluconeogenesis:** Certain amino acids can be used as precursors for glucose production, providing energy during periods of fasting or starvation.
* **Neurotransmitter synthesis:** Amino acids serve as precursors for neurotransmitters, such as glutamate, GABA, and serotonin.
* **Nucleotide biosynthesis:** Some amino acids are required for the synthesis of purines and pyrimidines, the building blocks of DNA and RNA.

**Regulation of Amino Acid Metabolism:**

* **Hormonal control:** Hormones like insulin and glucagon play a role in regulating amino acid metabolism.
* **Dietary intake:** The availability of amino acids in the diet influences the rates of synthesis and degradation.
* **Cellular demand:** The metabolic needs of the cell determine the specific amino acids required and the rates of their utilization.

**Disorders of Amino Acid Metabolism:**

* **Genetic defects:** Inherited disorders can affect specific enzymes involved in amino acid metabolism, leading to the accumulation of toxic metabolites.
* **Nutritional deficiencies:** Inadequate intake of essential amino acids can result in protein deficiency and various health problems.

Amino acid metabolism is a highly interconnected and complex process that is essential for life. Understanding the intricacies of this metabolic pathway is crucial for understanding health and disease.'
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Proteins (6)

ProteinDefinitionTaxonomy
Valacyclovir hydrolaseA valacyclovir hydrolase that is encoded in the genome of human. [PRO:DNx, UniProtKB:Q86WA6]Homo sapiens (human)
Kynurenine--oxoglutarate transaminase 3A kynurenine--oxoglutarate transaminase 3 that is encoded in the genome of human. [PRO:DNx, UniProtKB:Q6YP21]Homo sapiens (human)
Aromatic-L-amino-acid decarboxylaseAn aromatic-L-amino-acid decarboxylase that is encoded in the genome of human. [PRO:DNx, UniProtKB:P20711]Homo sapiens (human)
Glutathione hydrolase 1 proenzymeA glutathione hydrolase 1 proenzyme that is encoded in the genome of human. [PRO:CNA, UniProtKB:P19440]Homo sapiens (human)
Xaa-Pro dipeptidaseAn Xaa-Pro dipeptidase that is encoded in the genome of human. [PRO:DNx, UniProtKB:P12955]Homo sapiens (human)
Dihydropteridine reductaseA dihydropteridine reductase that is encoded in the genome of human. [PRO:DNx, UniProtKB:P09417]Homo sapiens (human)

Compounds (13)

CompoundDefinitionClassesRoles
1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine : A tetrahydropyridine that is 1,2,3,6-tetrahydropyridine substituted by a methyl group at position 1 and a phenyl group at position 4.

1-Methyl-4-phenyl-1,2,3,6-tetrahydropyridine: A dopaminergic neurotoxic compound which produces irreversible clinical, chemical, and pathological alterations that mimic those found in Parkinson disease.
methylpyridines;
phenylpyridine;
tetrahydropyridine
neurotoxin
aspirinacetylsalicylate : A benzoate that is the conjugate base of acetylsalicylic acid, arising from deprotonation of the carboxy group.

acetylsalicylic acid : A member of the class of benzoic acids that is salicylic acid in which the hydrogen that is attached to the phenolic hydroxy group has been replaced by an acetoxy group. A non-steroidal anti-inflammatory drug with cyclooxygenase inhibitor activity.

Aspirin: The prototypical analgesic used in the treatment of mild to moderate pain. It has anti-inflammatory and antipyretic properties and acts as an inhibitor of cyclooxygenase which results in the inhibition of the biosynthesis of prostaglandins. Aspirin also inhibits platelet aggregation and is used in the prevention of arterial and venous thrombosis. (From Martindale, The Extra Pharmacopoeia, 30th ed, p5)
benzoic acids;
phenyl acetates;
salicylates
anticoagulant;
antipyretic;
cyclooxygenase 1 inhibitor;
cyclooxygenase 2 inhibitor;
drug allergen;
EC 1.1.1.188 (prostaglandin-F synthase) inhibitor;
geroprotector;
non-narcotic analgesic;
non-steroidal anti-inflammatory drug;
plant activator;
platelet aggregation inhibitor;
prostaglandin antagonist;
teratogenic agent
chelerythrinechelerythrine : A benzophenanthridine alkaloid isolated from the root of Zanthoxylum simulans, Chelidonium majus L., and other Papaveraceae.benzophenanthridine alkaloid;
organic cation
antibacterial agent;
antineoplastic agent;
EC 2.7.11.13 (protein kinase C) inhibitor
nitidinenitidine: RN given refers to parent cpd; synonym NSC 146397 refers to chloride; structurephenanthridines
4-phenylpyridinephenylpyridine
piritreximpiritrexim: RN given refers to parent cpd; structure given in first source
sanguinarine chloride
1-methyl-4-(4-chlorophenyl)-1,2,3,6-tetrahydropyridine
4-phenyl-1,2,3,6-tetrahydropyridine4-phenyl-1,2,3,6-tetrahydropyridine: RN given refers to parent cpd
jtp 4819JTP 4819: a prolyl endopeptidase inhibitor; structure given in first source
apstatinapstatin: inhibits aminopeptidase P; structure given in first source
pf-04859989PF-04859989: a potent, brain-penetrant inhibitor of kynurenine aminotransferase II/KAT II with in vivo activity; structure in first source
valacyclovirValacyclovir: A prodrug of acyclovir that is used in the treatment of HERPES ZOSTER and HERPES SIMPLEX VIRUS INFECTION of the skin and mucous membranes, including GENITAL HERPES.L-valyl esterantiviral drug