Pathways > rRNA processing in the nucleus and cytosol
Page last updated: 2024-10-06

rRNA processing in the nucleus and cytosol

Proteins (176)

ProteinSynonymsTaxonomy
Ribosomal RNA small subunit methyltransferase NEP1EC 2.1.1.-; 18S rRNA (pseudouridine(1248)-N1)-methyltransferase; 18S rRNA Psi1248 methyltransferase; Nucleolar protein EMG1 homolog; Protein C2f; Ribosome biogenesis protein NEP1Homo sapiens (human)
40S ribosomal protein SA37 kDa laminin receptor precursor; 37LRP; 37/67 kDa laminin receptor; LRP/LR; 67 kDa laminin receptor; 67LR; Colon carcinoma laminin-binding protein; Laminin receptor 1; LamR; Laminin-binding protein precursor p40; LBP/p40; Multidrug resistance-associatedHomo sapiens (human)
60S ribosomal protein L1760S ribosomal protein L23; Large ribosomal subunit protein uL22; PD-1Homo sapiens (human)
60S ribosomal protein L13a23 kDa highly basic protein; Large ribosomal subunit protein uL13Homo sapiens (human)
60S ribosomal protein L29Cell surface heparin-binding protein HIP; Large ribosomal subunit protein eL29Homo sapiens (human)
Casein kinase I isoform deltaCKI-delta; CKId; EC 2.7.11.1; Tau-protein kinase CSNK1D; 2.7.11.26Homo sapiens (human)
Casein kinase I isoform epsilonCKI-epsilon; CKIe; EC 2.7.11.1Homo sapiens (human)
60S ribosomal protein L37aLarge ribosomal subunit protein eL43Homo sapiens (human)
60S ribosomal protein L2360S ribosomal protein L17; Large ribosomal subunit protein uL14Homo sapiens (human)
Serine/threonine-protein kinase RIO1EC 2.7.11.1; EC 3.6.3.-; RIO kinase 1Homo sapiens (human)
60S ribosomal protein L36Large ribosomal subunit protein eL36Homo sapiens (human)
Ubiquitin-60S ribosomal protein L40CEP52; Ubiquitin A-52 residue ribosomal protein fusion product 1Homo sapiens (human)
Proline-, glutamic acid- and leucine-rich protein 1Modulator of non-genomic activity of estrogen receptor; Transcription factor HMX3Homo sapiens (human)
Protein LTV1 homologHomo sapiens (human)
RNA cytidine acetyltransferaseEC 2.3.1.-; 18S rRNA cytosine acetyltransferase; N-acetyltransferase 10; N-acetyltransferase-like protein; hALPHomo sapiens (human)
Nucleolar RNA helicase 2EC 3.6.4.13; DEAD box protein 21; Gu-alpha; Nucleolar RNA helicase Gu; Nucleolar RNA helicase II; RH II/GuHomo sapiens (human)
Something about silencing protein 10Charged amino acid-rich leucine zipper 1; CRL1; Disrupter of silencing SAS10; UTP3 homologHomo sapiens (human)
60S ribosomal protein L23aLarge ribosomal subunit protein uL23Homo sapiens (human)
Serine/threonine-protein kinase RIO3EC 2.7.11.1; RIO kinase 3; sudD homologHomo sapiens (human)
60S acidic ribosomal protein P1Large ribosomal subunit protein P1Homo sapiens (human)
60S acidic ribosomal protein P060S ribosomal protein L10E; Large ribosomal subunit protein uL10Homo sapiens (human)
40S ribosomal protein S17Small ribosomal subunit protein eS17Homo sapiens (human)
40S ribosomal protein S240S ribosomal protein S4; Protein LLRep3; Small ribosomal subunit protein uS5Homo sapiens (human)
60S ribosomal protein L35aCell growth-inhibiting gene 33 protein; Large ribosomal subunit protein eL33Homo sapiens (human)
60S ribosomal protein L7Large ribosomal subunit protein uL30Homo sapiens (human)
40S ribosomal protein S3EC 4.2.99.18; Small ribosomal subunit protein uS3Homo sapiens (human)
40S ribosomal protein S12Small ribosomal subunit protein eS12Homo sapiens (human)
60S ribosomal protein L13Breast basic conserved protein 1; Large ribosomal subunit protein eL13Homo sapiens (human)
60S ribosomal protein L12Large ribosomal subunit protein uL11Homo sapiens (human)
60S ribosomal protein L9Large ribosomal subunit protein uL6Homo sapiens (human)
60S ribosomal protein L460S ribosomal protein L1; Large ribosomal subunit protein uL4Homo sapiens (human)
40S ribosomal protein S19Small ribosomal subunit protein eS19Homo sapiens (human)
40S ribosomal protein S27Metallopan-stimulin 1; MPS-1; Small ribosomal subunit protein eS27Homo sapiens (human)
60S ribosomal protein L35Large ribosomal subunit protein uL29Homo sapiens (human)
60S ribosomal protein L27aLarge ribosomal subunit protein uL15Homo sapiens (human)
60S ribosomal protein L5Large ribosomal subunit protein uL18Homo sapiens (human)
60S ribosomal protein L28Large ribosomal subunit protein eL28Homo sapiens (human)
40S ribosomal protein S9Small ribosomal subunit protein uS4Homo sapiens (human)
40S ribosomal protein S10Small ribosomal subunit protein eS10Homo sapiens (human)
60S ribosomal protein L34Large ribosomal subunit protein eL34Homo sapiens (human)
60S ribosomal protein L14CAG-ISL 7; Large ribosomal subunit protein eL14Homo sapiens (human)
40S ribosomal protein S20Small ribosomal subunit protein uS10Homo sapiens (human)
40S ribosomal protein S3aSmall ribosomal subunit protein eS1; v-fos transformation effector protein; Fte-1Homo sapiens (human)
60S ribosomal protein L15Large ribosomal subunit protein eL15Homo sapiens (human)
60S ribosomal protein L27Large ribosomal subunit protein eL27Homo sapiens (human)
60S ribosomal protein L37G1.16; Large ribosomal subunit protein eL37Homo sapiens (human)
40S ribosomal protein S7Small ribosomal subunit protein eS7Homo sapiens (human)
40S ribosomal protein S8Small ribosomal subunit protein eS8Homo sapiens (human)
40S ribosomal protein S15aSmall ribosomal subunit protein uS8Homo sapiens (human)
40S ribosomal protein S16Small ribosomal subunit protein uS9Homo sapiens (human)
40S ribosomal protein S14Small ribosomal subunit protein uS11Homo sapiens (human)
40S ribosomal protein S23Small ribosomal subunit protein uS12Homo sapiens (human)
40S ribosomal protein S18Ke-3; Ke3; Small ribosomal subunit protein uS13Homo sapiens (human)
40S ribosomal protein S29Small ribosomal subunit protein uS14Homo sapiens (human)
40S ribosomal protein S13Small ribosomal subunit protein uS15Homo sapiens (human)
40S ribosomal protein S11Small ribosomal subunit protein uS17Homo sapiens (human)
60S ribosomal protein L7aLarge ribosomal subunit protein eL8; PLA-X polypeptide; Surfeit locus protein 3Homo sapiens (human)
40S ribosomal protein S6Phosphoprotein NP33; Small ribosomal subunit protein eS6Homo sapiens (human)
40S ribosomal protein S15RIG protein; Small ribosomal subunit protein uS19Homo sapiens (human)
40S ribosomal protein S25Small ribosomal subunit protein eS25Homo sapiens (human)
40S ribosomal protein S26Small ribosomal subunit protein eS26Homo sapiens (human)
40S ribosomal protein S28Small ribosomal subunit protein eS28Homo sapiens (human)
40S ribosomal protein S30Small ribosomal subunit protein eS30Homo sapiens (human)
60S ribosomal protein L30Large ribosomal subunit protein eL30Homo sapiens (human)
60S ribosomal protein L31Large ribosomal subunit protein eL31Homo sapiens (human)
60S ribosomal protein L10aCSA-19; Large ribosomal subunit protein uL1; Neural precursor cell expressed developmentally down-regulated protein 6; NEDD-6Homo sapiens (human)
60S ribosomal protein L32Large ribosomal subunit protein eL32Homo sapiens (human)
60S ribosomal protein L11CLL-associated antigen KW-12; Large ribosomal subunit protein uL5Homo sapiens (human)
60S ribosomal protein L8Large ribosomal subunit protein uL2Homo sapiens (human)
60S ribosomal protein L41HG12; Large ribosomal subunit protein eL41Homo sapiens (human)
Ubiquitin-40S ribosomal protein S27aUbiquitin carboxyl extension protein 80Homo sapiens (human)
60S ribosomal protein L38Large ribosomal subunit protein eL38Homo sapiens (human)
40S ribosomal protein S21Small ribosomal subunit protein eS21Homo sapiens (human)
60S ribosomal protein L2460S ribosomal protein L30; Large ribosomal subunit protein eL24Homo sapiens (human)
60S ribosomal protein L19Large ribosomal subunit protein eL19Homo sapiens (human)
60S ribosomal protein L18aLarge ribosomal subunit protein eL20Homo sapiens (human)
60S ribosomal protein L6Large ribosomal subunit protein eL6; Neoplasm-related protein C140; Tax-responsive enhancer element-binding protein 107; TaxREB107Homo sapiens (human)
60S ribosomal protein L18Large ribosomal subunit protein eL18Homo sapiens (human)
Serine/threonine-protein kinase RIO2EC 2.7.11.1; RIO kinase 2Homo sapiens (human)
NucleolinProtein C23Homo sapiens (human)
Exosome RNA helicase MTR4EC 3.6.4.13; ATP-dependent RNA helicase DOB1; ATP-dependent RNA helicase SKIV2L2; Superkiller viralicidic activity 2-like 2; TRAMP-like complex helicaseHomo sapiens (human)
Nucleolar protein 6Nucleolar RNA-associated protein; NrapHomo sapiens (human)
Exosome component 10EC 3.1.13.-; Autoantigen PM/Scl 2; P100 polymyositis-scleroderma overlap syndrome-associated autoantigen; Polymyositis/scleroderma autoantigen 100 kDa; PM/Scl-100; Polymyositis/scleroderma autoantigen 2Homo sapiens (human)
5'-3' exoribonuclease 2EC 3.1.13.-; DHM1-like protein; DHP proteinHomo sapiens (human)
Exosome complex exonuclease RRP44EC 3.1.13.-; EC 3.1.26.-; Protein DIS3 homolog; Ribosomal RNA-processing protein 44Homo sapiens (human)
60S ribosomal protein L21Large ribosomal subunit protein eL21Homo sapiens (human)
40S ribosomal protein S5Small ribosomal subunit protein uS7Homo sapiens (human)
40S ribosomal protein S24Small ribosomal subunit protein eS24Homo sapiens (human)
60S acidic ribosomal protein P2Large ribosomal subunit protein P2; Renal carcinoma antigen NY-REN-44Homo sapiens (human)
Multifunctional methyltransferase subunit TRM112-like proteintRNA methyltransferase 112 homologHomo sapiens (human)
Polynucleotide 5'-hydroxyl-kinase NOL9EC 2.7.1.-; Nucleolar protein 9Homo sapiens (human)
Ribosomal RNA processing protein 1 homolog ANovel nuclear protein 1; NNP-1; Nucleolar protein Nop52; RRP1-like proteinHomo sapiens (human)
Exosome complex component RRP40Exosome component 3; Ribosomal RNA-processing protein 40; p10Homo sapiens (human)
Pescadillo homologHomo sapiens (human)
U3 small nucleolar ribonucleoprotein protein MPP10M phase phosphoprotein 10Homo sapiens (human)
Nucleolar protein 56Nucleolar protein 5AHomo sapiens (human)
WD repeat-containing protein 46WD repeat-containing protein BING4Homo sapiens (human)
Probable 18S rRNA (guanine-N(7))-methyltransferaseEC 2.1.1.-; Bud site selection protein 23 homolog; Metastasis-related methyltransferase 1; Williams-Beuren syndrome chromosomal region 22 protein; rRNA methyltransferase and ribosome maturation factorHomo sapiens (human)
U3 small nucleolar RNA-interacting protein 2RRP9 homolog; U3 small nucleolar ribonucleoprotein-associated 55 kDa protein; U3 snoRNP-associated 55 kDa protein; U3-55KHomo sapiens (human)
H/ACA ribonucleoprotein complex subunit DKC1EC 5.4.99.-; CBF5 homolog; Dyskerin; Nopp140-associated protein of 57 kDa; Nucleolar protein NAP57; Nucleolar protein family A member 4; snoRNP protein DKC1Homo sapiens (human)
Small subunit processome component 20 homologDown-regulated in metastasis protein; Novel nucleolar protein 73; NNP73; Protein Key-1A6Homo sapiens (human)
Ribonuclease P protein subunit p40RNaseP protein p40; EC 3.1.26.5; RNase P subunit 1Homo sapiens (human)
Ribonuclease P protein subunit p14EC 3.1.26.5Homo sapiens (human)
rRNA 2'-O-methyltransferase fibrillarinEC 2.1.1.-; 34 kDa nucleolar scleroderma antigen; Histone-glutamine methyltransferase; U6 snRNA 2'-O-methyltransferase fibrillarinHomo sapiens (human)
Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferaseEC 2.1.1.-; Nucleolar protein 1; Nucleolar protein 2 homolog; Proliferating-cell nucleolar antigen p120; Proliferation-associated nucleolar protein p120Homo sapiens (human)
NHP2-like protein 1High mobility group-like nuclear protein 2 homolog 1; OTK27; SNU13 homolog; hSNU13; U4/U6.U5 small nuclear ribonucleoprotein SNU13; U4/U6.U5 tri-snRNP 15.5 kDa proteinHomo sapiens (human)
Nucleolar protein 14Nucleolar complex protein 14Homo sapiens (human)
Ribonuclease P protein subunit p38RNaseP protein p38; EC 3.1.26.5Homo sapiens (human)
Ribonuclease P protein subunit p30RNaseP protein p30; EC 3.1.26.5; RNase P subunit 2Homo sapiens (human)
Exosome complex component RRP45Autoantigen PM/Scl 1; Exosome component 9; P75 polymyositis-scleroderma overlap syndrome-associated autoantigen; Polymyositis/scleroderma autoantigen 1; Polymyositis/scleroderma autoantigen 75 kDa; PM/Scl-75Homo sapiens (human)
Transducin beta-like protein 3WD repeat-containing protein SAZDHomo sapiens (human)
KRR1 small subunit processome component homologHIV-1 Rev-binding protein 2; KRR-R motif-containing protein 1; Rev-interacting protein 1; Rip-1Homo sapiens (human)
Exosome complex component RRP4Exosome component 2; Ribosomal RNA-processing protein 4Homo sapiens (human)
BystinHomo sapiens (human)
Nuclear nucleic acid-binding protein C1DhC1DHomo sapiens (human)
Ribosome biogenesis protein BOP1Block of proliferation 1 proteinHomo sapiens (human)
Protein RRP5 homologNF-kappa-B-binding protein; NFBP; Programmed cell death protein 11Homo sapiens (human)
Ribosome biogenesis protein BMS1 homologRibosome assembly protein BMS1 homologHomo sapiens (human)
Exosome complex component RRP42Exosome component 7; Ribosomal RNA-processing protein 42; p8Homo sapiens (human)
WD repeat-containing protein 43U3 small nucleolar RNA-associated protein 5 homologHomo sapiens (human)
Periodic tryptophan protein 2 homologHomo sapiens (human)
Pre-rRNA-processing protein TSR1 homologHomo sapiens (human)
Exosome complex component MTR3Exosome component 6; mRNA transport regulator 3 homolog; hMtr3; p11Homo sapiens (human)
Digestive organ expansion factor homologHomo sapiens (human)
40S ribosomal protein S27-likeSmall ribosomal subunit protein eS27-likeHomo sapiens (human)
3'-5' exoribonuclease 1EC 3.1.-.-; 3'-5' exonuclease ERI1; Eri-1 homolog; Histone mRNA 3'-end-specific exoribonuclease; Histone mRNA 3'-exonuclease 1; Protein 3'hExo; HEXOHomo sapiens (human)
WD repeat-containing protein 75U3 small nucleolar RNA-associated protein 17 homologHomo sapiens (human)
Probable ATP-dependent RNA helicase DHX37EC 3.6.4.13; DEAH box protein 37Homo sapiens (human)
pre-rRNA 2'-O-ribose RNA methyltransferase FTSJ3EC 2.1.1.-; Protein ftsJ homolog 3; Putative rRNA methyltransferase 3Homo sapiens (human)
WD repeat-containing protein 36T-cell activation WD repeat-containing protein; TA-WDRPHomo sapiens (human)
U3 small nucleolar RNA-associated protein 15 homologHomo sapiens (human)
U3 small nucleolar RNA-associated protein 4 homologCirhin; UTP4 small subunit processome componentHomo sapiens (human)
Exosome complex component RRP43Exosome component 8; Opa-interacting protein 2; OIP-2; Ribosomal RNA-processing protein 43; p9Homo sapiens (human)
Ribosomal RNA processing protein 36 homologHomo sapiens (human)
U3 small nucleolar ribonucleoprotein protein IMP4U3 snoRNP protein IMP4; Brix domain-containing protein 4Homo sapiens (human)
M-phase phosphoprotein 6Homo sapiens (human)
Probable rRNA-processing protein EBP2EBNA1-binding protein 2; Nucleolar protein p40Homo sapiens (human)
Ribonuclease P protein subunit p25RNase P protein subunit p25; EC 3.1.26.5Homo sapiens (human)
WD repeat-containing protein 18Homo sapiens (human)
Nucleolar complex protein 4 homologNOC4 protein homolog; NOC4-like protein; Nucleolar complex-associated protein 4-like proteinHomo sapiens (human)
Guanine nucleotide-binding protein-like 3E2-induced gene 3 protein; Novel nucleolar protein 47; NNP47; Nucleolar GTP-binding protein 3; NucleosteminHomo sapiens (human)
Ribosome biogenesis protein WDR12WD repeat-containing protein 12Homo sapiens (human)
Probable ATP-dependent RNA helicase DDX47EC 3.6.4.13; DEAD box protein 47Homo sapiens (human)
Sentrin-specific protease 3EC 3.4.22.-; SUMO-1-specific protease 3; Sentrin/SUMO-specific protease SENP3Homo sapiens (human)
HEAT repeat-containing protein 1Protein BAP28; U3 small nucleolar RNA-associated protein 10 homologHomo sapiens (human)
Ribonuclease P protein subunit p21RNaseP protein p21; EC 3.1.26.5; Ribonuclease P/MRP 21 kDa subunit; Ribonucleoprotein VHomo sapiens (human)
Nucleolar protein 11Homo sapiens (human)
Interferon-stimulated 20 kDa exonuclease-like 2EC 3.1.-.-Homo sapiens (human)
Exosome complex component RRP41Exosome component 4; Ribosomal RNA-processing protein 41; p12AHomo sapiens (human)
H/ACA ribonucleoprotein complex subunit 3Nucleolar protein 10; Nucleolar protein family A member 3; snoRNP protein NOP10Homo sapiens (human)
Exosome complex component RRP46Chronic myelogenous leukemia tumor antigen 28; Exosome component 5; Ribosomal RNA-processing protein 46; p12BHomo sapiens (human)
RNA-binding protein PNO1Partner of NOB1Homo sapiens (human)
DDB1- and CUL4-associated factor 13WD repeat and SOF domain-containing protein 1Homo sapiens (human)
U3 small nucleolar ribonucleoprotein protein IMP3U3 snoRNP protein IMP3; BRMS2Homo sapiens (human)
RNA-binding protein 28RNA-binding motif protein 28Homo sapiens (human)
H/ACA ribonucleoprotein complex subunit 2Nucleolar protein family A member 2; snoRNP protein NHP2Homo sapiens (human)
Testis-expressed protein 10Homo sapiens (human)
THUMP domain-containing protein 1Homo sapiens (human)
H/ACA ribonucleoprotein complex subunit 1Nucleolar protein family A member 1; snoRNP protein GAR1Homo sapiens (human)
U3 small nucleolar RNA-associated protein 6 homologHepatocellular carcinoma-associated antigen 66; Multiple hat domains proteinHomo sapiens (human)
Nucleolar protein 12Homo sapiens (human)
18S rRNA aminocarboxypropyltransferaseEC 2.5.1.-; 20S S rRNA accumulation protein 3 homolog; HsTsr3Homo sapiens (human)
RNA-binding protein NOB1EC 3.1.-.-; Phosphorylation regulatory protein HP-10; Protein ART-4Homo sapiens (human)
Probable dimethyladenosine transferaseEC 2.1.1.183; DIM1 dimethyladenosine transferase 1 homolog; DIM1 dimethyladenosine transferase 1-like; Probable 18S rRNA (adenine(1779)-N(6)/adenine(1780)-N(6))-dimethyltransferase; Probable 18S rRNA dimethylase; Probable S-adenosylmethionine-6-N',N'-adenHomo sapiens (human)
WD repeat-containing protein 3Homo sapiens (human)
60S ribosome subunit biogenesis protein NIP7 homologKD93Homo sapiens (human)
RNA 3'-terminal phosphate cyclase-like proteinHomo sapiens (human)
Probable ATP-dependent RNA helicase DDX52EC 3.6.4.13; ATP-dependent RNA helicase ROK1-like; DEAD box protein 52Homo sapiens (human)
Nucleolar protein 58Nucleolar protein 5Homo sapiens (human)
rRNA-processing protein FCF1 homologHomo sapiens (human)
Probable U3 small nucleolar RNA-associated protein 11U3 snoRNA-associated protein 11; UTP11-like proteinHomo sapiens (human)
Ribosomal RNA-processing protein 7 homolog AGastric cancer antigen Zg14Homo sapiens (human)
Exosome complex component CSL4Exosome component 1Homo sapiens (human)
Ribosomal biogenesis protein LAS1LProtein LAS1 homologHomo sapiens (human)
U3 small nucleolar RNA-associated protein 18 homologWD repeat-containing protein 50Homo sapiens (human)
Probable ATP-dependent RNA helicase DDX49EC 3.6.4.13; DEAD box protein 49Homo sapiens (human)

Compounds (7)

CompoundDescription
Orthophosphate
adenosine diphosphateAdenosine 5'-(trihydrogen diphosphate). An adenine nucleotide containing two phosphate groups esterified to the sugar moiety at the 5'-position.
5'-methylthioadenosinestructure
adenosine triphosphateAn adenine nucleotide containing three phosphate groups esterified to the sugar moiety. In addition to its crucial roles in metabolism adenosine triphosphate is a neurotransmitter.
s-adenosylmethioninePhysiologic methyl radical donor involved in enzymatic transmethylation reactions and present in all living organisms. It possesses anti-inflammatory activity and has been used in treatment of chronic liver disease. (From Merck, 11th ed)
Coenzyme A
Acetyl Coenzyme AAcetyl CoA participates in the biosynthesis of fatty acids and sterols, in the oxidation of fatty acids and in the metabolism of many amino acids. It also acts as a biological acetylating agent.