Page last updated: 2024-11-13

ly3000328

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Description

LY3000328: a cathepsin S inhibitor [Medical Subject Headings (MeSH), National Library of Medicine, extracted Dec-2023]

Cross-References

ID SourceID
PubMed CID67475270
CHEMBL ID3342553
SCHEMBL ID2618738
MeSH IDM000610199

Synonyms (31)

Synonym
1373215-15-6
z-fl-cocho
NDEBZCZEAVMSQF-GOTSBHOMSA-N ,
[(3r,4s)-4-[(4-fluorobenzoyl)amino]-6-[4-(oxetan-3-yl)piperazin-1-yl]chroman-3-yl]n-methylcarbamate
ly 3000328
HY-15533
CS-1120
(3r,4s)-4-[(4-fluorobenzoyl)amino]-6-[4-(oxetan-3-yl)piperazin-1-yl]-3,4-dihydro-2h-chromen-3-yl methylcarbamate
2fz ,
SCHEMBL2618738
ly-3000328
n-((3r,4s)-3,4-dihydro-3-(((methylamino)carbonyl)oxy)-6-(4-(3-oxetanyl)-1-piperazinyl)-2h-1-benzopyran-4-yl)-4-fluorobenzamide
benzamide, n-((3r,4s)-3,4-dihydro-3-(((methylamino)carbonyl)oxy)-6-(4-(3-oxetanyl)-1-piperazinyl)-2h-1-benzopyran-4-yl)-4-fluoro-
1210T8CX6K ,
DTXSID40737323
(3r,4s)-4-(4-fluorobenzamido)-6-[4-(oxetan-3-yl)piperazin-1-yl]-3,4-dihydro-2h-1-benzopyran-3-yl methylcarbamate
bdbm50030823
CHEMBL3342553 ,
ly3000328
AKOS030526459
unii-1210t8cx6k
(3r,4s)-4-(4-fluorobenzamido)-6-[4-(oxetan-3-yl)piperazin-1-yl]-3,4-dihydro-2h-1-benzopyran-3-yl n-methylcarbamate
NCGC00378866-01
(3r,4s)-4-(4-fluorobenzamido)-6-(4-(oxetan-3-yl)piperazin-1-yl)chroman-3-yl methylcarbamate
EX-A2231
BS-15315
BCP14297
Q27452973
C72497
[(3r,4s)-4-[(4-fluorobenzoyl)amino]-6-[4-(oxetan-3-yl)piperazin-1-yl]-3,4-dihydro-2h-chromen-3-yl] n-methylcarbamate
cathepsin s inhibitorcathepsin s inhibitor

Research Excerpts

Treatment

ExcerptReferenceRelevance
"Treatment with LY3000328, a selective inhibitor of Cat S, dose-dependently down-regulated EMG amplitude and Fractalkine (FKN) expression, indicating that Cat S regulated visceral hypersensitivity via activating FKN in IBS-like rats."( Spinal Cathepsin S promotes visceral hypersensitivity via FKN/CX3CR1/p38 MAPK signaling pathways.
Chen, A; Chen, Y; Gong, J; Huang, Y; Lin, C; Lin, W; Sun, P; Tang, Y; Weng, Y,
)
0.47

Pharmacokinetics

ExcerptReferenceRelevance
" The pharmacodynamic activity of LY3000328 was measured ex vivo showing a biphasic response to LY3000328, where CatS activity declines, then returns to baseline, and then increases to a level above baseline."( Pharmacokinetics and pharmacodynamics of the cathepsin S inhibitor, LY3000328, in healthy subjects.
Chan, M; DeBrota, DJ; Deeg, MA; LaBell, ES; Payne, CD; Shen, T; Tan, LH, 2014
)
0.92

Bioavailability

ExcerptReferenceRelevance
"The ATP-binding cassette transporter P-glycoprotein (P-gp) is known to limit both brain penetration and oral bioavailability of many chemotherapy drugs."( A High-Throughput Screen of a Library of Therapeutics Identifies Cytotoxic Substrates of P-glycoprotein.
Ambudkar, SV; Brimacombe, KR; Chen, L; Gottesman, MM; Guha, R; Hall, MD; Klumpp-Thomas, C; Lee, OW; Lee, TD; Lusvarghi, S; Robey, RW; Shen, M; Tebase, BG, 2019
)
0.51
[information is derived through text-mining from research data collected from National Library of Medicine (NLM), extracted Dec-2023]

Protein Targets (4)

Potency Measurements

ProteinTaxonomyMeasurementAverage (µ)Min (ref.)Avg (ref.)Max (ref.)Bioassay(s)
cytochrome P450 family 3 subfamily A polypeptide 4Homo sapiens (human)Potency37.90830.01237.983543.2770AID1645841
[prepared from compound, protein, and bioassay information from National Library of Medicine (NLM), extracted Dec-2023]

Inhibition Measurements

ProteinTaxonomyMeasurementAverageMin (ref.)Avg (ref.)Max (ref.)Bioassay(s)
Cathepsin SMus musculus (house mouse)IC50 (µMol)0.00170.00032.45556.3500AID1169037
Cytochrome P450 2D6Homo sapiens (human)IC50 (µMol)0.00170.00002.015110.0000AID1169037
Cathepsin SHomo sapiens (human)IC50 (µMol)0.00770.00021.319110.0000AID1169036
[prepared from compound, protein, and bioassay information from National Library of Medicine (NLM), extracted Dec-2023]

Biological Processes (34)

Processvia Protein(s)Taxonomy
xenobiotic metabolic processCytochrome P450 2D6Homo sapiens (human)
steroid metabolic processCytochrome P450 2D6Homo sapiens (human)
cholesterol metabolic processCytochrome P450 2D6Homo sapiens (human)
estrogen metabolic processCytochrome P450 2D6Homo sapiens (human)
coumarin metabolic processCytochrome P450 2D6Homo sapiens (human)
alkaloid metabolic processCytochrome P450 2D6Homo sapiens (human)
alkaloid catabolic processCytochrome P450 2D6Homo sapiens (human)
monoterpenoid metabolic processCytochrome P450 2D6Homo sapiens (human)
isoquinoline alkaloid metabolic processCytochrome P450 2D6Homo sapiens (human)
xenobiotic catabolic processCytochrome P450 2D6Homo sapiens (human)
retinol metabolic processCytochrome P450 2D6Homo sapiens (human)
long-chain fatty acid biosynthetic processCytochrome P450 2D6Homo sapiens (human)
negative regulation of bindingCytochrome P450 2D6Homo sapiens (human)
oxidative demethylationCytochrome P450 2D6Homo sapiens (human)
negative regulation of cellular organofluorine metabolic processCytochrome P450 2D6Homo sapiens (human)
arachidonic acid metabolic processCytochrome P450 2D6Homo sapiens (human)
toll-like receptor signaling pathwayCathepsin SHomo sapiens (human)
adaptive immune responseCathepsin SHomo sapiens (human)
proteolysisCathepsin SHomo sapiens (human)
apoptotic processCathepsin SHomo sapiens (human)
response to acidic pHCathepsin SHomo sapiens (human)
protein processingCathepsin SHomo sapiens (human)
antigen processing and presentationCathepsin SHomo sapiens (human)
antigen processing and presentation of exogenous peptide antigen via MHC class IICathepsin SHomo sapiens (human)
extracellular matrix disassemblyCathepsin SHomo sapiens (human)
collagen catabolic processCathepsin SHomo sapiens (human)
basement membrane disassemblyCathepsin SHomo sapiens (human)
antigen processing and presentation of peptide antigenCathepsin SHomo sapiens (human)
proteolysis involved in protein catabolic processCathepsin SHomo sapiens (human)
cellular response to thyroid hormone stimulusCathepsin SHomo sapiens (human)
positive regulation of cation channel activityCathepsin SHomo sapiens (human)
positive regulation of peptidase activityCathepsin SHomo sapiens (human)
immune responseCathepsin SHomo sapiens (human)
positive regulation of apoptotic signaling pathwayCathepsin SHomo sapiens (human)
[Information is prepared from geneontology information from the June-17-2024 release]

Molecular Functions (15)

Processvia Protein(s)Taxonomy
cysteine-type endopeptidase activityCathepsin SMus musculus (house mouse)
monooxygenase activityCytochrome P450 2D6Homo sapiens (human)
iron ion bindingCytochrome P450 2D6Homo sapiens (human)
oxidoreductase activityCytochrome P450 2D6Homo sapiens (human)
oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygenCytochrome P450 2D6Homo sapiens (human)
heme bindingCytochrome P450 2D6Homo sapiens (human)
anandamide 8,9 epoxidase activityCytochrome P450 2D6Homo sapiens (human)
anandamide 11,12 epoxidase activityCytochrome P450 2D6Homo sapiens (human)
anandamide 14,15 epoxidase activityCytochrome P450 2D6Homo sapiens (human)
fibronectin bindingCathepsin SHomo sapiens (human)
cysteine-type endopeptidase activityCathepsin SHomo sapiens (human)
serine-type endopeptidase activityCathepsin SHomo sapiens (human)
collagen bindingCathepsin SHomo sapiens (human)
laminin bindingCathepsin SHomo sapiens (human)
proteoglycan bindingCathepsin SHomo sapiens (human)
cysteine-type endopeptidase activator activity involved in apoptotic processCathepsin SHomo sapiens (human)
[Information is prepared from geneontology information from the June-17-2024 release]

Ceullar Components (16)

Processvia Protein(s)Taxonomy
early endosome lumenCathepsin SMus musculus (house mouse)
mitochondrionCytochrome P450 2D6Homo sapiens (human)
endoplasmic reticulumCytochrome P450 2D6Homo sapiens (human)
endoplasmic reticulum membraneCytochrome P450 2D6Homo sapiens (human)
cytoplasmCytochrome P450 2D6Homo sapiens (human)
intracellular membrane-bounded organelleCytochrome P450 2D6Homo sapiens (human)
extracellular regionCathepsin SHomo sapiens (human)
extracellular spaceCathepsin SHomo sapiens (human)
lysosomeCathepsin SHomo sapiens (human)
late endosomeCathepsin SHomo sapiens (human)
endolysosome lumenCathepsin SHomo sapiens (human)
lysosomal lumenCathepsin SHomo sapiens (human)
intracellular membrane-bounded organelleCathepsin SHomo sapiens (human)
phagocytic vesicleCathepsin SHomo sapiens (human)
collagen-containing extracellular matrixCathepsin SHomo sapiens (human)
tertiary granule lumenCathepsin SHomo sapiens (human)
ficolin-1-rich granule lumenCathepsin SHomo sapiens (human)
extracellular spaceCathepsin SHomo sapiens (human)
lysosomeCathepsin SHomo sapiens (human)
[Information is prepared from geneontology information from the June-17-2024 release]

Bioassays (35)

Assay IDTitleYearJournalArticle
AID1169046Volume of distribution in Beagle dog at 1 mg/kg, iv or 3 mg/kg, po2014ACS medicinal chemistry letters, Oct-09, Volume: 5, Issue:10
Discovery of Cathepsin S Inhibitor LY3000328 for the Treatment of Abdominal Aortic Aneurysm.
AID1169059Inhibition of CaCl2-induced abdominal aortic aneurysm in 129SvEv mouse assessed as reduction in aortic diameter at 1 mg/kg dosed through oral gavage BID for 4 weeks with first dose given one day prior to surgery2014ACS medicinal chemistry letters, Oct-09, Volume: 5, Issue:10
Discovery of Cathepsin S Inhibitor LY3000328 for the Treatment of Abdominal Aortic Aneurysm.
AID1169053Drug metabolism in human liver microsomes after 30 mins at 4 uM2014ACS medicinal chemistry letters, Oct-09, Volume: 5, Issue:10
Discovery of Cathepsin S Inhibitor LY3000328 for the Treatment of Abdominal Aortic Aneurysm.
AID1169037Inhibition of mouse cathepsin S using benzyloxycarbonyl-L-Leucyl-L-Arginine 4-Methyl-coumaryl-7-amide substrate by FRET assay2014ACS medicinal chemistry letters, Oct-09, Volume: 5, Issue:10
Discovery of Cathepsin S Inhibitor LY3000328 for the Treatment of Abdominal Aortic Aneurysm.
AID1169055Displacement of [3H]astemizole form human ERG expressed in HEK293 cell membranes at 100 uM2014ACS medicinal chemistry letters, Oct-09, Volume: 5, Issue:10
Discovery of Cathepsin S Inhibitor LY3000328 for the Treatment of Abdominal Aortic Aneurysm.
AID1169063AUC (0 to 24 hrs) in 129SvEv mouse model of CaCl2-induced abdominal aortic aneurysm at 1 mg/kg dosed through oral gavage BID for 4 weeks with first dose given one day prior to surgery2014ACS medicinal chemistry letters, Oct-09, Volume: 5, Issue:10
Discovery of Cathepsin S Inhibitor LY3000328 for the Treatment of Abdominal Aortic Aneurysm.
AID1169051Drug metabolism in rat liver microsomes after 30 mins at 4 uM2014ACS medicinal chemistry letters, Oct-09, Volume: 5, Issue:10
Discovery of Cathepsin S Inhibitor LY3000328 for the Treatment of Abdominal Aortic Aneurysm.
AID1169048Inhibition of CYP2D6 (unknown origin) using bufuralol substrate at 10 uM2014ACS medicinal chemistry letters, Oct-09, Volume: 5, Issue:10
Discovery of Cathepsin S Inhibitor LY3000328 for the Treatment of Abdominal Aortic Aneurysm.
AID1169057Stability in rat plasma assessed as loss of parent compound after 30 mins2014ACS medicinal chemistry letters, Oct-09, Volume: 5, Issue:10
Discovery of Cathepsin S Inhibitor LY3000328 for the Treatment of Abdominal Aortic Aneurysm.
AID1169045Clearance in Beagle dog at 1 mg/kg, iv or 3 mg/kg, po2014ACS medicinal chemistry letters, Oct-09, Volume: 5, Issue:10
Discovery of Cathepsin S Inhibitor LY3000328 for the Treatment of Abdominal Aortic Aneurysm.
AID1169054Permeability from apical to basolateral side in MDCK cells at 2.5 uM incubated for 1 hr2014ACS medicinal chemistry letters, Oct-09, Volume: 5, Issue:10
Discovery of Cathepsin S Inhibitor LY3000328 for the Treatment of Abdominal Aortic Aneurysm.
AID1169042Dissociation constant, basic pKa of the compound2014ACS medicinal chemistry letters, Oct-09, Volume: 5, Issue:10
Discovery of Cathepsin S Inhibitor LY3000328 for the Treatment of Abdominal Aortic Aneurysm.
AID1169064AUC (0 to 24 hrs) in 129SvEv mouse model of CaCl2-induced abdominal aortic aneurysm at 3 mg/kg dosed through oral gavage BID for 4 weeks with first dose given one day prior to surgery2014ACS medicinal chemistry letters, Oct-09, Volume: 5, Issue:10
Discovery of Cathepsin S Inhibitor LY3000328 for the Treatment of Abdominal Aortic Aneurysm.
AID1169036Inhibition of human cathepsin S using benzyloxycarbonyl-L-Leucyl-L-Arginine 4-Methyl-coumaryl-7-amide substrate by FRET assay2014ACS medicinal chemistry letters, Oct-09, Volume: 5, Issue:10
Discovery of Cathepsin S Inhibitor LY3000328 for the Treatment of Abdominal Aortic Aneurysm.
AID1169049Inhibition of CYP2C9 (unknown origin) using diclofenac substrate at 10 uM2014ACS medicinal chemistry letters, Oct-09, Volume: 5, Issue:10
Discovery of Cathepsin S Inhibitor LY3000328 for the Treatment of Abdominal Aortic Aneurysm.
AID1169066AUC (0 to 24 hrs) in 129SvEv mouse model of CaCl2-induced abdominal aortic aneurysm at 30 mg/kg dosed through oral gavage BID for 4 weeks with first dose given one day prior to surgery2014ACS medicinal chemistry letters, Oct-09, Volume: 5, Issue:10
Discovery of Cathepsin S Inhibitor LY3000328 for the Treatment of Abdominal Aortic Aneurysm.
AID1169041Lipophilicity, log D of the compound at pH 4.02014ACS medicinal chemistry letters, Oct-09, Volume: 5, Issue:10
Discovery of Cathepsin S Inhibitor LY3000328 for the Treatment of Abdominal Aortic Aneurysm.
AID1169040Lipophilicity, log P of the compound2014ACS medicinal chemistry letters, Oct-09, Volume: 5, Issue:10
Discovery of Cathepsin S Inhibitor LY3000328 for the Treatment of Abdominal Aortic Aneurysm.
AID1169047Inhibition of CYP3A4 (unknown origin) using midazolam substrate at 10 uM2014ACS medicinal chemistry letters, Oct-09, Volume: 5, Issue:10
Discovery of Cathepsin S Inhibitor LY3000328 for the Treatment of Abdominal Aortic Aneurysm.
AID1169044Oral bioavailability in Beagle dog at 3 mg/kg2014ACS medicinal chemistry letters, Oct-09, Volume: 5, Issue:10
Discovery of Cathepsin S Inhibitor LY3000328 for the Treatment of Abdominal Aortic Aneurysm.
AID1169043Solubility in simulated gastric fluid2014ACS medicinal chemistry letters, Oct-09, Volume: 5, Issue:10
Discovery of Cathepsin S Inhibitor LY3000328 for the Treatment of Abdominal Aortic Aneurysm.
AID1169058Inhibition of CaCl2-induced abdominal aortic aneurysm in 129SvEv mouse assessed as reduction in aortic diameter at 1 to 30 mg/kg dosed through oral gavage BID for 4 weeks with first dose given one day prior to surgery2014ACS medicinal chemistry letters, Oct-09, Volume: 5, Issue:10
Discovery of Cathepsin S Inhibitor LY3000328 for the Treatment of Abdominal Aortic Aneurysm.
AID1169052Drug metabolism in dog liver microsomes after 30 mins at 4 uM2014ACS medicinal chemistry letters, Oct-09, Volume: 5, Issue:10
Discovery of Cathepsin S Inhibitor LY3000328 for the Treatment of Abdominal Aortic Aneurysm.
AID1169065AUC (0 to 24 hrs) in 129SvEv mouse model of CaCl2-induced abdominal aortic aneurysm at 10 mg/kg dosed through oral gavage BID for 4 weeks with first dose given one day prior to surgery2014ACS medicinal chemistry letters, Oct-09, Volume: 5, Issue:10
Discovery of Cathepsin S Inhibitor LY3000328 for the Treatment of Abdominal Aortic Aneurysm.
AID1169056Stability in human plasma assessed as loss of parent compound after 30 mins2014ACS medicinal chemistry letters, Oct-09, Volume: 5, Issue:10
Discovery of Cathepsin S Inhibitor LY3000328 for the Treatment of Abdominal Aortic Aneurysm.
AID1169060Inhibition of CaCl2-induced abdominal aortic aneurysm in 129SvEv mouse assessed as reduction in aortic diameter at 3 mg/kg dosed through oral gavage BID for 4 weeks with first dose given one day prior to surgery2014ACS medicinal chemistry letters, Oct-09, Volume: 5, Issue:10
Discovery of Cathepsin S Inhibitor LY3000328 for the Treatment of Abdominal Aortic Aneurysm.
AID1169050Drug metabolism in mouse liver microsomes after 30 mins at 4 uM2014ACS medicinal chemistry letters, Oct-09, Volume: 5, Issue:10
Discovery of Cathepsin S Inhibitor LY3000328 for the Treatment of Abdominal Aortic Aneurysm.
AID1169062Inhibition of CaCl2-induced abdominal aortic aneurysm in 129SvEv mouse assessed as reduction in aortic diameter at 30 mg/kg dosed through oral gavage BID for 4 weeks with first dose given one day prior to surgery2014ACS medicinal chemistry letters, Oct-09, Volume: 5, Issue:10
Discovery of Cathepsin S Inhibitor LY3000328 for the Treatment of Abdominal Aortic Aneurysm.
AID1169061Inhibition of CaCl2-induced abdominal aortic aneurysm in 129SvEv mouse assessed as reduction in aortic diameter at 10 mg/kg dosed through oral gavage BID for 4 weeks with first dose given one day prior to surgery2014ACS medicinal chemistry letters, Oct-09, Volume: 5, Issue:10
Discovery of Cathepsin S Inhibitor LY3000328 for the Treatment of Abdominal Aortic Aneurysm.
AID1169038Inhibition of rat cathepsin S G137C mutant using benzyloxycarbonyl-L-Leucyl-L-Arginine 4-Methyl-coumaryl-7-amide substrate by FRET assay2014ACS medicinal chemistry letters, Oct-09, Volume: 5, Issue:10
Discovery of Cathepsin S Inhibitor LY3000328 for the Treatment of Abdominal Aortic Aneurysm.
AID1347159Primary screen GU Rhodamine qHTS for Zika virus inhibitors: Unlinked NS2B-NS3 protease assay2020Proceedings of the National Academy of Sciences of the United States of America, 12-08, Volume: 117, Issue:49
Therapeutic candidates for the Zika virus identified by a high-throughput screen for Zika protease inhibitors.
AID1296008Cytotoxic Profiling of Annotated Libraries Using Quantitative High-Throughput Screening2020SLAS discovery : advancing life sciences R & D, 01, Volume: 25, Issue:1
Cytotoxic Profiling of Annotated and Diverse Chemical Libraries Using Quantitative High-Throughput Screening.
AID1346987P-glycoprotein substrates identified in KB-8-5-11 adenocarcinoma cell line, qHTS therapeutic library screen2019Molecular pharmacology, 11, Volume: 96, Issue:5
A High-Throughput Screen of a Library of Therapeutics Identifies Cytotoxic Substrates of P-glycoprotein.
AID1346986P-glycoprotein substrates identified in KB-3-1 adenocarcinoma cell line, qHTS therapeutic library screen2019Molecular pharmacology, 11, Volume: 96, Issue:5
A High-Throughput Screen of a Library of Therapeutics Identifies Cytotoxic Substrates of P-glycoprotein.
AID1347160Primary screen NINDS Rhodamine qHTS for Zika virus inhibitors2020Proceedings of the National Academy of Sciences of the United States of America, 12-08, Volume: 117, Issue:49
Therapeutic candidates for the Zika virus identified by a high-throughput screen for Zika protease inhibitors.
[information is prepared from bioassay data collected from National Library of Medicine (NLM), extracted Dec-2023]

Research

Studies (7)

TimeframeStudies, This Drug (%)All Drugs %
pre-19900 (0.00)18.7374
1990's0 (0.00)18.2507
2000's0 (0.00)29.6817
2010's4 (57.14)24.3611
2020's3 (42.86)2.80
[information is prepared from research data collected from National Library of Medicine (NLM), extracted Dec-2023]

Market Indicators

Research Demand Index: 19.89

According to the monthly volume, diversity, and competition of internet searches for this compound, as well the volume and growth of publications, there is estimated to be moderate demand-to-supply ratio for research on this compound.

MetricThis Compound (vs All)
Research Demand Index19.89 (24.57)
Research Supply Index2.30 (2.92)
Research Growth Index4.56 (4.65)
Search Engine Demand Index15.26 (26.88)
Search Engine Supply Index2.00 (0.95)

This Compound (19.89)

All Compounds (24.57)

Study Types

Publication TypeThis drug (%)All Drugs (%)
Trials1 (12.50%)5.53%
Reviews0 (0.00%)6.00%
Case Studies0 (0.00%)4.05%
Observational0 (0.00%)0.25%
Other7 (87.50%)84.16%
[information is prepared from research data collected from National Library of Medicine (NLM), extracted Dec-2023]