Target type: molecularfunction
Binding to an iron-sulfur cluster, a combination of iron and sulfur atoms. [GOC:ai]
Iron-sulfur cluster binding is a molecular function that describes the interaction of proteins with iron-sulfur (Fe-S) clusters. These clusters are inorganic prosthetic groups composed of iron and sulfur atoms, often arranged in specific configurations like [2Fe-2S], [4Fe-4S], or [3Fe-4S] clusters. Fe-S clusters play a crucial role in a wide range of biological processes, including electron transfer, redox reactions, enzyme catalysis, and DNA repair.
The binding of an Fe-S cluster to a protein typically involves specific amino acid residues within the protein's structure. These residues, often cysteine or histidine, coordinate to the iron atoms of the cluster, forming a stable complex. The precise arrangement and chemical environment of the Fe-S cluster within the protein determine its specific function.
**Electron Transfer:** Fe-S clusters are excellent electron carriers due to their ability to readily gain or lose electrons. This property makes them essential components of electron transport chains, such as those found in mitochondria and chloroplasts. For instance, in respiratory complexes, Fe-S clusters facilitate the transfer of electrons from one molecule to another, ultimately leading to ATP production.
**Redox Reactions:** Fe-S clusters are involved in various redox reactions, where they act as electron donors or acceptors. In enzymes like aconitase, the Fe-S cluster participates in the reversible isomerization of citrate to isocitrate, a crucial step in the citric acid cycle.
**Enzyme Catalysis:** Many enzymes rely on Fe-S clusters for their catalytic activity. Nitrogenase, the enzyme responsible for nitrogen fixation, utilizes an intricate Fe-S cluster complex to reduce atmospheric nitrogen to ammonia. Other enzymes with Fe-S cluster-dependent activity include succinate dehydrogenase, a key enzyme in the electron transport chain, and pyruvate dehydrogenase, involved in glucose metabolism.
**DNA Repair:** Fe-S clusters are also implicated in DNA repair pathways. For example, the enzyme endonuclease III, which repairs oxidative damage to DNA, contains a [4Fe-4S] cluster involved in the cleavage of damaged DNA strands.
**Regulation:** The assembly, disassembly, and stability of Fe-S clusters are carefully regulated within the cell. Dedicated machinery, including proteins like Nfs1 and IscU, ensures proper cluster formation and delivery to target proteins.
In conclusion, iron-sulfur cluster binding is a fundamental molecular function that underpins a wide variety of essential biological processes. The diverse roles of these clusters in electron transfer, redox reactions, enzyme catalysis, and DNA repair highlight their importance for maintaining cellular function and survival.'
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Protein | Definition | Taxonomy |
---|---|---|
4-aminobutyrate aminotransferase, mitochondrial | A 4-aminobutyrate aminotransferase, mitochondrial that is encoded in the genome of human. [PRO:DNx, UniProtKB:P80404] | Homo sapiens (human) |
40S ribosomal protein S3 | A eukaryotic-type small ribosomal subunit protein uS3 that is encoded in the genome of human. [PRO:DNx, UniProtKB:P23396] | Homo sapiens (human) |
Compound | Definition | Classes | Roles |
---|---|---|---|
gamma-aminobutyric acid | gamma-aminobutyric acid : A gamma-amino acid that is butanoic acid with the amino substituent located at C-4. gamma-Aminobutyric Acid: The most common inhibitory neurotransmitter in the central nervous system. | amino acid zwitterion; gamma-amino acid; monocarboxylic acid | human metabolite; neurotransmitter; Saccharomyces cerevisiae metabolite; signalling molecule |
4-hydroxybenzyl alcohol | 4-hydroxybenzyl alcohol: the aglycone of gastrodin p-hydroxybenzyl alcohol : A member of the class of benzyl alcohols that is benzyl alcohol substituted by a hydroxy group at position 4. It has been isolated from Arcangelisia gusanlung. | benzyl alcohols; phenols | plant metabolite |
4-hydroxybenzaldehyde | hydroxybenzaldehyde | EC 1.14.17.1 (dopamine beta-monooxygenase) inhibitor; mouse metabolite; plant metabolite | |
4-hydroxybenzoic acid | 4-hydroxybenzoic acid : A monohydroxybenzoic acid that is benzoic acid carrying a hydroxy substituent at C-4 of the benzene ring. | monohydroxybenzoic acid | algal metabolite; plant metabolite |
anthranilic acid | anthranilic acid : An aminobenzoic acid that is benzoic acid having a single amino substituent located at position 2. It is a metabolite produced in L-tryptophan-kynurenine pathway in the central nervous system. anthranilic acid: RN given refers to parent cpd; structure in Negwer, 5th ed, #565 | aminobenzoic acid | human metabolite; mouse metabolite |
4-aminobenzoic acid | 4-aminobenzoic acid : An aminobenzoic acid in which the amino group is para to the carboxy group. 4-Aminobenzoic Acid: An aminobenzoic acid isomer that combines with pteridine and GLUTAMIC ACID to form FOLIC ACID. The fact that 4-aminobenzoic acid absorbs light throughout the UVB range has also resulted in its use as an ingredient in SUNSCREENS. 4-ammoniobenzoate : A zwitterion obtained by transfer of a proton from the carboxy to the amino group of 4-aminobenzoic acid. | aminobenzoic acid; aromatic amino-acid zwitterion | allergen; Escherichia coli metabolite; plant metabolite |
vanillin | Vanilla: A plant genus of the family ORCHIDACEAE that is the source of the familiar flavoring used in foods and medicines (FLAVORING AGENTS). | benzaldehydes; monomethoxybenzene; phenols | anti-inflammatory agent; anticonvulsant; antioxidant; flavouring agent; plant metabolite |
vigabatrin | gamma-amino acid | anticonvulsant; EC 2.6.1.19 (4-aminobutyrate--2-oxoglutarate transaminase) inhibitor | |
4-hydroxypropiophenone | acetophenones | ||
3-aminobenzoic acid | 3-aminobenzoic acid : An aminobenzoic acid carrying an amino group at position 3. 3-aminobenzoic acid: RN given refers to parent cpd | aminobenzoic acid | |
4-hydroxyacetophenone | 4-hydroxyacetophenone: promotes secretion of bile & bile salts, which promotes griseofulvin absorption in the duodenum 4'-hydroxyacetophenone : A monohydroxyacetophenone carrying a hydroxy substituent at position 4'. | monohydroxyacetophenone | fungal metabolite; mouse metabolite; plant metabolite |
4-anisaldehyde | 4-anisaldehyde: RN given refers to cpd with specified locants for methoxy moieties; structure in Merck, 9th ed, #696 p-methoxybenzaldehyde : A member of the class of benzaldehydes consisting of benzaldehyde itself carrying a methoxy substituent at position 4. | benzaldehydes | bacterial metabolite; human urinary metabolite; insect repellent; plant metabolite |
4-hydroxybenzylamine | 4-hydroxybenzylamine: RN given refers to parent cpd | aromatic amine | |
gastrodin | gastrodin: the glucoside of 4-hydroxybenzyl alcohol (gastrodigenin); isolated from Gastrodia elata Blume; | glycoside | |
baicalein | trihydroxyflavone | angiogenesis inhibitor; anti-inflammatory agent; antibacterial agent; anticoronaviral agent; antifungal agent; antineoplastic agent; antioxidant; apoptosis inducer; EC 1.13.11.31 (arachidonate 12-lipoxygenase) inhibitor; EC 1.13.11.33 (arachidonate 15-lipoxygenase) inhibitor; EC 3.4.21.26 (prolyl oligopeptidase) inhibitor; EC 3.4.22.69 (SARS coronavirus main proteinase) inhibitor; EC 4.1.1.17 (ornithine decarboxylase) inhibitor; ferroptosis inhibitor; geroprotector; hormone antagonist; plant metabolite; prostaglandin antagonist; radical scavenger | |
gentamicin sulfate | |||
helicide | helicide: structure given in first source | glycoside | |
PF-06446846 | PF-06446846 : A triazolopyridine that is 3H-[1,2,3]triazolo[4,5-b]pyridine substituted by a 4-{(3-chloropyridin-2-yl)[(3R)-piperidin-3-yl]carbamoyl}phenyl group at position 3. It is a potent inhibitor of PCSK9. PF-06446846: inhibits translation of PCSK9 ;structure in first source | benzamides; monochloropyridine; piperidines; tertiary carboxamide; triazolopyridine | antilipemic drug; EC 3.4.21.61 (kexin) inhibitor |