Target type: biologicalprocess
Any process that modulates the frequency, rate or extent of the non-canonical NF-kappaB signaling cascade. [GOC:TermGenie]
The regulation of non-canonical NF-κB signaling is a complex process involving multiple steps and key players. It is distinct from the canonical pathway and primarily relies on the activation of NF-κB2 (p100) and its processing into the active NF-κB2 (p52) subunit.
Here's a detailed breakdown:
1. **Stimulus Recognition:** This pathway is triggered by a variety of stimuli, including:
* **Lymphotoxin-α (LTα):** This cytokine binds to its receptor, LTβR, on cells like lymphocytes and stromal cells.
* **CD40 Ligand (CD40L):** A protein expressed on activated T cells that binds to CD40 on antigen-presenting cells (APCs).
* **B cell activating factor (BAFF):** A cytokine involved in B cell survival and maturation.
* **Other Signals:** Some bacterial and viral signals can also activate this pathway.
2. **Upstream Signaling Cascade:** Upon stimulus binding, a signaling cascade is initiated:
* **Receptor Complex Formation:** LTβR, CD40, or BAFF receptor complex with TRAF2 and TRAF3 adaptor proteins.
* **IKKα Kinase Activation:** TRAF2/3 recruit and activate the IKKα kinase.
* **NF-κB2 (p100) Phosphorylation:** IKKα directly phosphorylates NF-κB2 (p100) at multiple sites.
3. **p100 Processing:** Phosphorylated NF-κB2 (p100) undergoes ubiquitination and is transported to the proteasome for processing.
* **Ubiquitination:** TRAF2/3 recruit the E3 ubiquitin ligase complex, comprising cIAPs (cellular inhibitor of apoptosis proteins) and the E2 ligase Ubc5, to ubiquitinate p100. This ubiquitination is necessary for proteasome targeting.
* **Proteasomal Degradation:** The ubiquitinated p100 is degraded by the proteasome, resulting in the removal of its C-terminal domain, which contains a repressive domain.
4. **p52 Generation and Nuclear Translocation:** The degradation of p100 generates p52, the active form of NF-κB2.
* **RelB Heterodimerization:** p52 forms a heterodimer with the RelB subunit of the NF-κB family.
* **Nuclear Translocation:** The p52/RelB heterodimer translocates to the nucleus, where it acts as a transcription factor.
5. **Transcriptional Regulation:** The p52/RelB complex binds to specific DNA sequences called κB sites in the promoter regions of target genes. It then activates the transcription of these genes, influencing cellular processes like:
* **Lymphocyte development and differentiation:** Regulating the production and survival of specific immune cells.
* **Secondary lymphoid organ formation:** Controlling the development of lymph nodes and Peyer's patches.
* **Immune response regulation:** Modulating immune responses against pathogens and inflammation.
* **Cell survival and apoptosis:** Influencing the programmed cell death pathways.
6. **Negative Regulation:** The non-canonical pathway also involves mechanisms for negative regulation:
* **Degradation of TRAF2/3:** TRAF2/3 can be degraded by the proteasome, limiting the duration of the signal.
* **Inhibition of IKKα:** A protein called IKKα-N, which lacks the kinase domain, can inhibit IKKα activity.
* **Negative feedback loops:** Some of the genes activated by p52/RelB encode proteins that inhibit the pathway, preventing its overactivation.
In summary, the non-canonical NF-κB pathway is a crucial regulatory process that involves a complex interplay of proteins, kinases, and ubiquitin ligases. It controls a diverse set of cellular functions, especially in the context of immune responses and development.'
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Protein | Definition | Taxonomy |
---|---|---|
Tyrosine-protein phosphatase non-receptor type 22 | A tyrosine-protein phosphatase non-receptor type 22 that is encoded in the genome of human. [PRO:DNx, UniProtKB:Q9Y2R2] | Homo sapiens (human) |
Advanced glycosylation end product-specific receptor | An advanced glycosylation end product-specific receptor that is encoded in the genome of human. [PRO:DNx, UniProtKB:Q15109] | Homo sapiens (human) |
Baculoviral IAP repeat-containing protein 2 | A baculoviral IAP repeat-containing protein 2 that is encoded in the genome of human. [PRO:DNx, UniProtKB:Q13490] | Homo sapiens (human) |
Peroxiredoxin-1 | A peroxiredoxin-1 that is encoded in the genome of human. [PRO:DNx, UniProtKB:Q06830] | Homo sapiens (human) |
Ezrin | An ezrin that is encoded in the genome of human. [PRO:CNA, UniProtKB:P15311] | Homo sapiens (human) |
Compound | Definition | Classes | Roles |
---|---|---|---|
quinolinic acid | pyridinedicarboxylic acid : Any member of the class of pyridines carrying two carboxy groups. quinolinic acid : A pyridinedicarboxylic acid that is pyridine substituted by carboxy groups at positions 2 and 3. It is a metabolite of tryptophan. Quinolinic Acid: A metabolite of tryptophan with a possible role in neurodegenerative disorders. Elevated CSF levels of quinolinic acid are correlated with the severity of neuropsychological deficits in patients who have AIDS. | pyridinedicarboxylic acid | Escherichia coli metabolite; human metabolite; mouse metabolite; NMDA receptor agonist |
lawsone | lawsone : 1,4-Naphthoquinone carrying a hydroxy function at C-2. It is obtained from the leaves of Lawsonia inermis. lawsone: a molluscacide from leaves of Lawsonia inermis L. topical sunscreening agent; structure; powdered leaves of Lawsonia inermis(Lythraceae) used as brown hair dye | ||
1,2-naphthoquinone | 1,2-naphthoquinone : The parent structure of the family of 1,2-naphthoquinones, in which the oxo groups of the quinone moiety are at positions 1 and 2 of the naphthalene ring. It is a metabolite of naphthalene and is found in diesel exhaust particles. naphthalene-1,2-dione: structure given in first source | 1,2-naphthoquinones | aryl hydrocarbon receptor agonist; carcinogenic agent |
1,2-dihydroxynaphthalene | 1,2-dihydroxynaphthalene: RN given refers to parent cpd | naphthalenediol | mouse metabolite |
matrine | alkaloid | ||
nsc668394 | |||
cefsulodin | cefsulodin : A pyridinium-substituted semi-synthetic, broad-spectrum, cephalosporin antibiotic. Cefsulodin: A pyridinium-substituted semisynthetic, broad-spectrum antibacterial used especially for Pseudomonas infections in debilitated patients. | cephalosporin; organosulfonic acid; primary carboxamide | antibacterial drug |
morusin | morusin : An extended flavonoid that is flavone substituted by hydroxy groups at positions 5, 2' and 4', a prenyl group at position 3 and a 2,2-dimethyl pyran group across positions 7 and 8. morusin: from Morus root bark; structure given in first source | extended flavonoid; trihydroxyflavone | antineoplastic agent; plant metabolite |
trans-2,3',4,5'-tetrahydroxystilbene | trans-2,3',4,5'-tetrahydroxystilbene: hydroxystilbene oxyresveratrol | stilbenoid | |
Norartocarpetin | flavones | ||
piericidin a | piericidin A : A member of the class of monohydroxypyridines that acts as an irreversible mitochondrial Complex I inhibitor that strongly associates with ubiquinone binding sites in both mitochondrial and bacterial forms of NADH:ubiquinone oxidoreductase piericidin A: pyridine-substituted fatty alcohol antibiotic; minor descriptor (75-85); on-line & Index Medicus search ANTIBIOTICS (75-85); RN given refers to (S-(R*,R*-(all-E)))-isomer | aromatic ether; methylpyridines; monohydroxypyridine; secondary allylic alcohol | antimicrobial agent; bacterial metabolite; EC 1.6.5.3 [NADH:ubiquinone reductase (H(+)-translocating)] inhibitor; mitochondrial respiratory-chain inhibitor |
vilazodone | vilazodone : A 1-benzofuran that is 5-(piperazin-1-yl}-1-benzofuran-2-carboxamide having a (5-cyanoindol-3-yl)butyl group attached at position N-4 on the piperazine ring. Used for the treatment of major depressive disorder. | 1-benzofurans; indoles; monocarboxylic acid amide; N-alkylpiperazine; N-arylpiperazine; nitrile | antidepressant; serotonergic agonist; serotonin uptake inhibitor |
(-)-n-((2s,3r)-3-amino-2-hydroxy-4-phenyl-butyryl)-l-leucine methyl ester | |||
lbw242 | LBW242: proapoptotic IAP inhibitor; low MW Smac (Second mitochondria-derived activator of caspases) mimetic; structure in first source | ||
sm 164 | SM 164: a bivalent Smac mimetic with antineoplastic activity; structure in first source | benzenes; organic heterobicyclic compound; secondary carboxamide; triazoles | antineoplastic agent; apoptosis inducer; radiosensitizing agent |
cudraflavanone a | cudraflavanone A: antineoplastic from Cudrania tricuspidata; structure in first source | ||
lcl161 | 1,3-thiazoles; aromatic ketone; L-alanine derivative; monofluorobenzenes; N-acylpyrrolidine | antineoplastic agent; apoptosis inducer | |
fps-zm1 | FPS-ZM1: a neuroprotective agent and RAGE receptor antagonist; structure in first source | ||
at 406 | |||
3-(1-(3-(biphenyl-4-ylamino)-3-oxopropyl)-1h-1,2,3-triazol-4-yl)-6-hydroxy-1-methyl-2-phenyl-1h-indole-5-carboxylic acid | 3-(1-(3-(biphenyl-4-ylamino)-3-oxopropyl)-1H-1,2,3-triazol-4-yl)-6-hydroxy-1-methyl-2-phenyl-1H-indole-5-carboxylic acid: an SHP2 inhibitor; structure in first source | ||
glucopiericidin a | glucopiericidin A: from Streptomyces pactum S48727 as co-metabolite of piericidin A(1); structure given in first source; glycoside antibiotic | ||
gdc-0152 | GDC-0152: structure in first source | ||
birinapant | birinapant: a Smac mimetic with antineoplastic activity | dipeptide | |
nvp-cgm097 | NVP-CGM097: an MDM2 and HDM2 inhibitor; structure in first source | ||
n(delta)-(5-methyl-4-oxo-2-imidazolin-2-yl)ornithine | N(delta)-(5-methyl-4-oxo-2-imidazolin-2-yl)ornithine: RN given for (L)-isomer; structure in first source |