Page last updated: 2024-10-24

actin rod assembly

Definition

Target type: biologicalprocess

The assembly of actin rods, a cellular structure consisting of parallel, hexagonally arranged actin tubules. [GOC:pg, PMID:14706699]

Actin rod assembly is a fundamental process in eukaryotic cells, essential for diverse cellular functions like cell migration, division, and maintaining cell shape. The process involves the polymerization of monomeric globular actin (G-actin) into filamentous actin (F-actin) to form rod-like structures. The formation of actin rods is regulated by a complex interplay of actin-binding proteins, including nucleators, capping proteins, and severing factors.

**Nucleation:** The initial step in actin rod assembly is the formation of a stable nucleus, typically a trimer of G-actin molecules. Nucleation is the rate-limiting step in actin polymerization and requires specific proteins called nucleators. These proteins, such as the Arp2/3 complex, formin, and Spire, provide a platform for G-actin monomers to bind and initiate the formation of the nucleus.

**Elongation:** Once the nucleus is formed, G-actin monomers add to both ends of the filament, a process called elongation. This step is driven by the inherent ability of G-actin to bind to other G-actin molecules and is further influenced by the concentration of free G-actin monomers. The plus end of the filament, also known as the barbed end, grows faster than the minus end, known as the pointed end.

**Capping:** To control the length of the actin rods, cells utilize capping proteins that bind to the ends of the filament. Capping proteins, such as CapZ and tropomodulin, prevent further addition of G-actin monomers to the ends, effectively capping the filament.

**Severing:** To regulate the length and organization of actin rods, cells use severing factors like cofilin. Cofilin binds to F-actin, destabilizing the filament and promoting its breakage into shorter fragments. This process allows for the recycling of actin and the generation of new filaments for further polymerization.

**Branching:** In many cell types, actin filaments form branched networks. The Arp2/3 complex is crucial for this process, as it binds to the side of existing filaments and nucleates the formation of new branches at a 70-degree angle. These branched networks provide structural support and create a dynamic cytoskeleton, allowing cells to respond to their environment and migrate.

**Regulation:** Actin rod assembly is tightly regulated by a complex interplay of signaling pathways, including those involving Rho GTPases. These small GTPases, such as Rho, Rac, and Cdc42, activate downstream effectors that influence the activity of actin-binding proteins, thereby controlling the dynamics of actin polymerization and the formation of specific actin structures.

**Conclusion:** The assembly of actin rods is a multifaceted process that is essential for diverse cellular functions. The intricate interplay of nucleators, capping proteins, severing factors, and regulatory pathways ensures that actin polymerization occurs in a controlled manner, leading to the formation of dynamic and functional actin structures.'
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Proteins (1)

ProteinDefinitionTaxonomy
EndoplasminAn endoplasmin that is encoded in the genome of human. [PRO:DAN]Homo sapiens (human)

Compounds (22)

CompoundDefinitionClassesRoles
adenosine diphosphateAdenosine Diphosphate: Adenosine 5'-(trihydrogen diphosphate). An adenine nucleotide containing two phosphate groups esterified to the sugar moiety at the 5'-position.adenosine 5'-phosphate;
purine ribonucleoside 5'-diphosphate
fundamental metabolite;
human metabolite
2-chloroadenosine5-chloroformycin A: structure given in first sourcepurine nucleoside
adenosinequinquefolan B: isolated from roots of Panax quinquefolium L.; RN not in Chemline 10/87; RN from Toxlitadenosines;
purines D-ribonucleoside
analgesic;
anti-arrhythmia drug;
fundamental metabolite;
human metabolite;
vasodilator agent
adenosine-5'-carboxylic acidpurine nucleoside
adenosine 5'-carboxamideadenosine 5'-carboxamide: structure
5'-n-methylcarboxamideadenosine5'-N-methylcarboxamideadenosine: RN given refers to (beta-D)-isomer
n-methyladenosineN-methyladenosine: is a inhibitor of cell differentiation

N(6)-methyladenosine : A methyladenosine compound with one methyl group attached to N(6) of the adenine nucleobase.
methyladenosine
ethyl adenosine-5'-carboxylateethyl adenosine-5'-carboxylate: potent vasoactive substance; RN given refers to parent cpd
adenosine 5'-phosphoramidateadenosine 5'-phosphoramidate : The phosphoramadite analogue of AMP.organic phosphoramidateMycoplasma genitalium metabolite
adenosine-5'-(n-ethylcarboxamide)Adenosine-5'-(N-ethylcarboxamide): A stable adenosine A1 and A2 receptor agonist. Experimentally, it inhibits cAMP and cGMP phosphodiesterase activity.

N-ethyl-5'-carboxamidoadenosine : A derivative of adenosine in which the 5'-hydroxymethyl group is replaced by an N-ethylcarboxamido group.
adenosines;
monocarboxylic acid amide
adenosine A1 receptor agonist;
adenosine A2A receptor agonist;
antineoplastic agent;
EC 3.1.4.* (phosphoric diester hydrolase) inhibitor;
vasodilator agent
adenosine-5'-(N-propyl)carboxamideadenosine-5'-(N-propyl)carboxamide : A monocarboxylic acid amide that is the propyl amide of adenosine 5'-carboxylic acid.adenosines;
monocarboxylic acid amide
1-aminoadenosine1-aminoadenosine: structure
9h-purine-9-propanamine, 6-amino-8-((6-iodo-1,3-benzodioxol-5-yl)thio)-n-(1-methylethyl)-9H-purine-9-propanamine, 6-amino-8-((6-iodo-1,3-benzodioxol-5-yl)thio)-N-(1-methylethyl)-: an epichaperome (purine-scaffold) inhibitor; structure in first source
5'-amino-5'-deoxyadenosine
n-cyclopropyl adenosine-5'-carboxamide
ec 144EC 144: structure in first source
at 13387(2,4-dihydroxy-5-isopropylphenyl)-(5-(4-methylpiperazin-1-ylmethyl)-1,3-dihydroisoindol-2-yl)methanone: structure in first source

onalespib : A member of the class of isoindoles that is isoindole in which the amino group has been acylated by a 2,4-dihydroxy-5-isopropylbenzoyl group and in which position 5 of the isoidole moiety has been substituted by a (4-methylpiperazin-1-yl)methyl group. A second-generation Hsp90 inhibitor.
benzamides;
isoindoles;
N-alkylpiperazine;
resorcinols;
tertiary carboxamide
antineoplastic agent;
Hsp90 inhibitor
cnf 20242-aminopurines;
aromatic ether;
organochlorine compound;
pyridines
antineoplastic agent;
Hsp90 inhibitor
snx 2112SNX 2112: an orally available small molecule Hsp90 inhibitor; structure in first source
tas-116
ver 52296luminespib : A monocarboxylic acid amide obtained by formal condensation of the carboxy group of 5-(2,4-dihydroxy-5-isopropylphenyl)-4-[4-(morpholin-4-ylmethyl)phenyl]-1,2-oxazole-3-carboxylic acid with the amino group of ethylamine.aromatic amide;
isoxazoles;
monocarboxylic acid amide;
morpholines;
resorcinols
angiogenesis inhibitor;
antineoplastic agent;
Hsp90 inhibitor
sta 9090ring assembly;
triazoles