Page last updated: 2024-10-24

5'-deoxynucleotidase activity

Definition

Target type: molecularfunction

Catalysis of the reaction:a 2'-deoxyribonucleoside 5'-monophosphate + H20=a 2'-deoxyribonucleoside + phosphate. [EC:3.1.3.89]

5'-Deoxynucleotidase activity refers to the enzymatic hydrolysis of a 5'-deoxyribonucleotide, cleaving the phosphate group from the 5' position of the deoxyribose sugar. This activity plays a crucial role in various cellular processes, including DNA metabolism, nucleotide salvage pathways, and the regulation of cellular signaling.

Specifically, 5'-deoxynucleotidases catalyze the removal of the phosphate group from 5'-deoxyribonucleotides, generating the corresponding deoxyribonucleosides. These deoxyribonucleosides can then be further metabolized or utilized in other cellular processes.

The molecular function of 5'-deoxynucleotidase activity involves:

* **Substrate binding:** The enzyme binds to the 5'-deoxyribonucleotide substrate, recognizing the specific chemical structure of the nucleotide.
* **Hydrolysis:** The enzyme utilizes water to break the phosphodiester bond between the phosphate group and the 5' hydroxyl group of the deoxyribose sugar, releasing the inorganic phosphate.
* **Product release:** The enzyme releases the deoxyribonucleoside product, allowing it to participate in other cellular pathways.

5'-Deoxynucleotidase activity is often associated with diseases like cancer and cardiovascular disease. The activity of these enzymes can be regulated by factors such as pH, metal ions, and other cellular components. The dysregulation of 5'-deoxynucleotidase activity can contribute to pathological conditions.
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Proteins (1)

ProteinDefinitionTaxonomy
5'-nucleotidaseA 5-nucleotidase that is encoded in the genome of human. [PRO:WCB, UniProtKB:P21589]Homo sapiens (human)

Compounds (16)

CompoundDefinitionClassesRoles
sulfamic acidsulfamic acid : The simplest of the sulfamic acids consisting of a single sulfur atom covalently bound by single bonds to hydroxy and amino groups and by double bonds to two oxygen atoms.

sulfamic acid: standard in alkalimetry; RN given refers to parent cpd; structure
sulfamic acids
adenosine monophosphateAdenosine Monophosphate: Adenine nucleotide containing one phosphate group esterified to the sugar moiety in the 2'-, 3'-, or 5'-position.adenosine 5'-phosphate;
purine ribonucleoside 5'-monophosphate
adenosine A1 receptor agonist;
cofactor;
EC 3.1.3.1 (alkaline phosphatase) inhibitor;
EC 3.1.3.11 (fructose-bisphosphatase) inhibitor;
fundamental metabolite;
micronutrient;
nutraceutical
1-naphthol-8-amino-3,6-disulfonic acid1-naphthol-8-amino-3,6-disulfonic acid: dye and found in industrial waste
4-sulfanilic acid4-aminobenzenesulfonic acid : An aminobenzenesulfonic acid that is aniline sulfonated at the para-position.

4-sulfanilic acid: minor descriptor (75-82); online search SULFANILIC ACIDS; Index Medicus search BENZENESULFONATES
aminobenzenesulfonic acidallergen;
environmental contaminant;
xenobiotic;
xenobiotic metabolite
betulinic acidhydroxy monocarboxylic acid;
pentacyclic triterpenoid
anti-HIV agent;
anti-inflammatory agent;
antimalarial;
antineoplastic agent;
EC 5.99.1.3 [DNA topoisomerase (ATP-hydrolysing)] inhibitor;
plant metabolite
1,2,3,4,6-pentakis-O-galloyl-beta-D-glucose1,2,3,4,6-pentakis-O-galloyl-beta-D-glucose : A galloyl-beta-D-glucose compound having five galloyl groups in the 1-, 2-, 3-, 4- and 6-positions.

pentagalloylglucose: pentahydroxy gallic acid ester of glucose; a phytogenic antineoplastic agent and antibacterial agent
gallate ester;
galloyl beta-D-glucose
anti-inflammatory agent;
antineoplastic agent;
geroprotector;
hepatoprotective agent;
plant metabolite;
radiation protective agent;
radical scavenger
betulinbetulin : A pentacyclic triterpenoid that is lupane having a double bond at position 20(29) as well as 3beta-hydroxy and 28-hydroxymethyl substituents.

betulin: isolated from various white birch bark (BETULA)
diol;
pentacyclic triterpenoid
analgesic;
anti-inflammatory agent;
antineoplastic agent;
antiviral agent;
metabolite
adenosine 5'-methylenediphosphatenucleoside diphosphate analogue
Lup-20(29)-en-28-al, 3beta-hydroxy-triterpenoid
betulonic acidbetulonic acid: isolated from Rush javanica; strucure in first sourcetriterpenoidanticoronaviral agent
fludarabinepurine nucleoside
ellagic acidcatechols;
cyclic ketone;
lactone;
organic heterotetracyclic compound;
polyphenol
antioxidant;
EC 1.14.18.1 (tyrosinase) inhibitor;
EC 2.3.1.5 (arylamine N-acetyltransferase) inhibitor;
EC 2.4.1.1 (glycogen phosphorylase) inhibitor;
EC 2.5.1.18 (glutathione transferase) inhibitor;
EC 2.7.1.127 (inositol-trisphosphate 3-kinase) inhibitor;
EC 2.7.1.151 (inositol-polyphosphate multikinase) inhibitor;
EC 2.7.4.6 (nucleoside-diphosphate kinase) inhibitor;
EC 2.7.7.7 (DNA-directed DNA polymerase) inhibitor;
EC 5.99.1.2 (DNA topoisomerase) inhibitor;
EC 5.99.1.3 [DNA topoisomerase (ATP-hydrolysing)] inhibitor;
food additive;
fungal metabolite;
geroprotector;
plant metabolite;
skin lightening agent
3-nitrobenzaldehyde isonicotinoylhydrazone3-nitrobenzaldehyde isonicotinoylhydrazone: structure in first source
23-hydroxybetulinic acid23-hydroxybetulinic acid: structure in first sourcetriterpenoidmetabolite
salinazidaromatic carboxylic acid;
pyridinemonocarboxylic acid
phthivazide