Page last updated: 2024-10-24

D-serine biosynthetic process

Definition

Target type: biologicalprocess

The chemical reactions and pathways resulting in the formation of D-serine, the D-enantiomer of serine, i.e. (2R)-2-amino-3-hydroxypropanoic acid. D-serine is often formed by racemization of L-serine. [CHEBI:16523, GOC:jsg, GOC:mah]

D-serine biosynthesis is a metabolic pathway that produces D-serine, a non-proteinogenic amino acid that plays an important role in various biological processes, particularly in the nervous system. The pathway involves a series of enzymatic reactions, with the key enzyme being serine racemase. Serine racemase is a pyridoxal phosphate-dependent enzyme that catalyzes the interconversion of L-serine and D-serine. The reaction proceeds through a series of steps, including the formation of a Schiff base between pyridoxal phosphate and L-serine. This is followed by a series of protonation and deprotonation events that ultimately lead to the formation of D-serine. D-serine is a potent activator of the N-methyl-D-aspartate (NMDA) receptor, a glutamate receptor that plays a crucial role in synaptic plasticity and learning. D-serine is also involved in other processes, such as neuroprotection and the regulation of cell growth and differentiation. The biosynthesis of D-serine is tightly regulated, and its levels are influenced by factors such as age, diet, and stress.'
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Proteins (1)

ProteinDefinitionTaxonomy
Serine racemaseA serine racemase that is encoded in the genome of human. [PRO:DNx, UniProtKB:Q9GZT4]Homo sapiens (human)

Compounds (9)

CompoundDefinitionClassesRoles
benzoic acidaromatic carboxylic acid : Any carboxylic acid in which the carboxy group is directly bonded to an aromatic ring.

benzoic acid : A compound comprising a benzene ring core carrying a carboxylic acid substituent.

Benzoic Acid: A fungistatic compound that is widely used as a food preservative. It is conjugated to GLYCINE in the liver and excreted as hippuric acid.
benzoic acidsalgal metabolite;
antimicrobial food preservative;
drug allergen;
EC 1.13.11.33 (arachidonate 15-lipoxygenase) inhibitor;
EC 3.1.1.3 (triacylglycerol lipase) inhibitor;
human xenobiotic metabolite;
plant metabolite
glycinealpha-amino acid;
amino acid zwitterion;
proteinogenic amino acid;
serine family amino acid
EC 2.1.2.1 (glycine hydroxymethyltransferase) inhibitor;
fundamental metabolite;
hepatoprotective agent;
micronutrient;
neurotransmitter;
NMDA receptor agonist;
nutraceutical
malonic aciddicarboxylic acid : Any carboxylic acid containing two carboxy groups.

malonic acid : An alpha,omega-dicarboxylic acid in which the two carboxy groups are separated by a single methylene group.
alpha,omega-dicarboxylic acidhuman metabolite
thiophene-3-carboxylic acidthiophene-3-carboxylic acid: structure in first source
3-hydroxy-1-benzopyran-2-one3-hydroxycoumarin: Photoprotective from sea urchin gametes and embryonic cells; structure in first source

hydroxycoumarin : Any coumarin carrying at least one hydroxy substituent.
hydroxycoumarin
tricarballylic acidtricarballylic acid : A tricarboxylic acid that is glutaric acid in which one of the beta-hydrogens is substituted by a carboxy group.

tricarballylic acid: RN given refers to parent cpd
tricarboxylic acid
crotonic acidbutenoic acid : Any C4, straight-chain fatty acid containing one double bond.

crotonic acid : A but-2-enoic acid with a trans- double bond at C-2. It has been isolated from Daucus carota.

crotonic acid: a stereospecific unsaturated carboxylic acid found in CROTON OIL
2-butenoic acidplant metabolite
3-coumaric acid3-coumaric acid : A monohydroxycinnamic acid in which the hydroxy substituent is located at C-3 of the phenyl ring.

3-coumaric acid: RN given refers to cpd without isomeric designation in Chemline

trans-3-coumaric acid : A 3-coumaric acid that is phenol substituted with trans-2-propenoic acid at position C-3.
3-coumaric acid
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