Page last updated: 2024-10-24

phosphatidylinositol dephosphorylation

Definition

Target type: biologicalprocess

The process of removing one or more phosphate groups from a phosphatidylinositol. [ISBN:0198506732]

Phosphatidylinositol dephosphorylation is a crucial biological process involving the removal of a phosphate group from phosphatidylinositol (PI), a key lipid molecule present in cell membranes. This process plays a vital role in regulating various cellular functions, including signal transduction, membrane trafficking, and cytoskeletal organization.

The dephosphorylation of PI is catalyzed by a family of enzymes known as phosphatidylinositol phosphatases (PIPases). These enzymes exhibit substrate specificity, targeting different positions on the inositol ring of PI. For instance, PI 4-phosphatases remove a phosphate group from the 4-position, while PI 5-phosphatases target the 5-position.

The removal of a phosphate group from PI generates various phosphatidylinositol phosphate (PIP) species, each with distinct regulatory roles. For example, PI(4,5)P2, a key signaling molecule, is dephosphorylated by PI 5-phosphatases to generate PI(4)P, which is involved in membrane trafficking and cytoskeletal organization.

The dephosphorylation process is tightly regulated and influenced by a variety of factors, including:

- **Cellular localization:** PIPases are often localized to specific cellular compartments, ensuring targeted dephosphorylation of PI.
- **Activation and inhibition:** PIPases can be activated or inhibited by various signaling molecules, including proteins, lipids, and ions.
- **Substrate availability:** The availability of PI and its phosphorylated derivatives influences the rate of dephosphorylation.

The biological significance of phosphatidylinositol dephosphorylation is evident in its involvement in various cellular processes:

- **Signal transduction:** PIP species act as second messengers, relaying signals from receptors to downstream effectors. Their dephosphorylation regulates signal termination and duration.
- **Membrane trafficking:** PIP species control the dynamics of membrane vesicles, influencing their budding, fusion, and movement.
- **Cytoskeletal organization:** PIP species regulate the assembly and disassembly of the actin cytoskeleton, impacting cell shape, motility, and adhesion.

Dysregulation of phosphatidylinositol dephosphorylation has been implicated in several disease states, including cancer, neurodegenerative diseases, and metabolic disorders. Understanding the intricate mechanisms governing this process is crucial for developing therapeutic strategies targeting these conditions.'
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Proteins (5)

ProteinDefinitionTaxonomy
Synaptojanin-2A synaptojanin-2 that is encoded in the genome of human. [PRO:DNx, UniProtKB:O15056]Homo sapiens (human)
Inositol polyphosphate-5-phosphatase AAn inositol polyphosphate-5-phosphatase A that is encoded in the genome of human. [PRO:DNx, UniProtKB:Q14642]Homo sapiens (human)
Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTENA phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN that is encoded in the genome of human. [PRO:PD, UniProtKB:P60484]Homo sapiens (human)
Synaptojanin-1A synaptojanin-1 that is encoded in the genome of human. [PRO:DNx, UniProtKB:O43426]Homo sapiens (human)
Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 2A phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 2 that is encoded in the genome of human. [PRO:DNx, UniProtKB:O15357]Homo sapiens (human)

Compounds (15)

CompoundDefinitionClassesRoles
2-(4-hydroxyphenyl)-5,6,7,8-tetrahydroxy-4H-1-benzopyran-4-one2-(4-hydroxyphenyl)-5,6,7,8-tetrahydroxy-4H-1-benzopyran-4-one : A pentahydroxyflavone that is flavone substituted by hydroxy groups at positions 5, 6, 7, 8, and 4' respectively.pentahydroxyflavone
inositol-1,3,4,5-tetrakisphosphate1D-myo-inositol 1,3,4,5-tetrakisphosphate : A myo-inositol tetrakisphosphate having the four phosphates placed in the 1-, 3-, 4- and 5-positions.

inositol-1,3,4,5-tetrakisphosphate: for cpd without numerical locants of phosphate groups, index INOSITOL PHOSPHATES
inositol phosphate
epicatechin gallate(-)-epicatechin-3-O-gallate : A gallate ester obtained by formal condensation of the carboxy group of gallic acid with the (3R)-hydroxy group of epicatechin. A natural product found in Parapiptadenia rigida.

epicatechin gallate: a steroid 5alpha-reductase inhibitor; RN given refers to the (cis)-isomer; structure given in first source; isolated from green tea
catechin;
gallate ester;
polyphenol
EC 3.2.1.1 (alpha-amylase) inhibitor;
EC 3.2.1.20 (alpha-glucosidase) inhibitor;
metabolite
celastrolmonocarboxylic acid;
pentacyclic triterpenoid
anti-inflammatory drug;
antineoplastic agent;
antioxidant;
EC 5.99.1.3 [DNA topoisomerase (ATP-hydrolysing)] inhibitor;
Hsp90 inhibitor;
metabolite
ampelopsin(+)-dihydromyricetin : An optically active form of dihydromyricetin having (2R,3R)-configuration.

ampelopsin: hepatoprotective agent; isolated from Hovenia dulcis; RN given for (2R-trans)-isomer; structure in first source
dihydromyricetin;
secondary alpha-hydroxy ketone
antineoplastic agent;
antioxidant;
metabolite
nsc-89199estramustine phosphate : A steroid phosphate which is the 17-O-phospho derivative of estramustine.carbamate ester;
organochlorine compound;
steroid phosphate
inositol 1,4,5-trisphosphateInositol 1,4,5-Trisphosphate: Intracellular messenger formed by the action of phospholipase C on phosphatidylinositol 4,5-bisphosphate, which is one of the phospholipids that make up the cell membrane. Inositol 1,4,5-trisphosphate is released into the cytoplasm where it releases calcium ions from internal stores within the cell's endoplasmic reticulum. These calcium ions stimulate the activity of B kinase or calmodulin.myo-inositol trisphosphatemouse metabolite
epiafzelechin(-)-epiafzelechin : A catechin derivative having (2R,3R)-configuration.

epiafzelechin: antioxidant; 3'-deoxy form of epicatechin; structure in first source
catechinplant metabolite
pyrviniumpyrvinium : A quinolinium ion that is 1-methylquinolinium substituted by dimethylamino group at position 6 and a (E)-2-(2,5-dimethyl-1-phenyl-1H-pyrrol-3-yl)ethenyl at position 2. It is a anthelminthic drug active against pinworms. The salts of pyrvinium can also be used as anticancer agents.

pyrvinium: RN given refers to parent cpd; synonyms vanquin & vankin refer to pamoate[2:1]; structure in Merck Index, 9th ed, #7810
quinolinium ionanthelminthic drug;
antineoplastic agent
trans-2,3',4,5'-tetrahydroxystilbenetrans-2,3',4,5'-tetrahydroxystilbene: hydroxystilbene oxyresveratrolstilbenoid
chlorhexidinechlorhexidine : A bisbiguanide compound with a structure consisting of two (p-chlorophenyl)guanide units linked by a hexamethylene bridge.

Chlorhexidine: A disinfectant and topical anti-infective agent used also as mouthwash to prevent oral plaque.
biguanides;
monochlorobenzenes
antibacterial agent;
antiinfective agent
crizotinibcrizotinib : A 3-[1-(2,6-dichloro-3-fluorophenyl)ethoxy]-5-[1-(piperidin-4-yl)pyrazol-4-yl]pyridin-2-amine that has R configuration at the chiral centre. The active enantiomer, it acts as a kinase inhibitor and is used for the treatment of patients with locally advanced or metastatic non-small cell lung cancer (NSCLC)

Crizotinib: A piperidine and aminopyridine derivative that acts as an inhibitor of RECEPTOR PROTEIN-TYROSINE KINASES, including ANAPLASTIC LYMPHOMA KINASE (ALK) and HEPATOCYTE GROWTH FACTOR RECEPTOR (HGFR; c-Met). It is used in the treatment of NON-SMALL CELL LUNG CANCER.
3-[1-(2,6-dichloro-3-fluorophenyl)ethoxy]-5-[1-(piperidin-4-yl)pyrazol-4-yl]pyridin-2-amineantineoplastic agent;
biomarker;
EC 2.7.10.1 (receptor protein-tyrosine kinase) inhibitor
eriodictyol 7-O-beta-D-glucopyranosidebeta-D-glucoside;
flavanone glycoside;
monosaccharide derivative;
trihydroxyflavanone
plant metabolite;
radical scavenger
as1949490
galloflavingalloflavin: structure in first source