Page last updated: 2024-10-24

protein hydroxylation

Definition

Target type: biologicalprocess

The addition of a hydroxy group to a protein amino acid. [GOC:ai]

Protein hydroxylation is a crucial post-translational modification process that involves the enzymatic addition of a hydroxyl group (-OH) to a specific amino acid residue within a protein. This modification plays a vital role in regulating protein structure, function, and stability, and it is implicated in a wide array of biological processes.

Hydroxylation typically occurs on proline, lysine, and asparagine residues, although other amino acids can be hydroxylated under specific circumstances. The enzymatic machinery responsible for hydroxylation comprises a diverse group of enzymes known as hydroxylases. These enzymes require molecular oxygen (O2) and a reducing agent, often NADH or NADPH, as cofactors to catalyze the hydroxylation reaction.

The specific amino acid residue targeted for hydroxylation is determined by the substrate specificity of the hydroxylase enzyme. For instance, prolyl hydroxylases (PHDs) specifically target proline residues, while lysyl hydroxylases target lysine residues.

One of the most well-studied examples of protein hydroxylation is the modification of collagen, a major component of connective tissues. Hydroxylation of proline residues in collagen is essential for the formation of stable triple helical structures that provide strength and flexibility to tissues. Deficiencies in collagen hydroxylation can lead to genetic diseases like scurvy, which is characterized by weakened connective tissues.

Another notable example of protein hydroxylation involves the regulation of hypoxia-inducible factor 1 (HIF-1). HIF-1 is a transcription factor that plays a central role in cellular responses to low oxygen levels (hypoxia). Hydroxylation of specific proline residues in HIF-1 by PHDs targets it for ubiquitination and proteasomal degradation, effectively turning off its transcriptional activity. This mechanism ensures that HIF-1 is only active under hypoxic conditions, allowing cells to adapt to low oxygen availability.

In addition to regulating protein structure and function, protein hydroxylation also plays a role in cellular signaling pathways. For example, hydroxylation of specific lysine residues in histones, the proteins that package DNA, can influence gene expression by altering chromatin structure.

In summary, protein hydroxylation is a fundamental post-translational modification that plays a crucial role in diverse biological processes. Its impact on protein structure, function, stability, and signaling pathways highlights its importance in maintaining cellular homeostasis and regulating a wide range of physiological functions.'
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Proteins (3)

ProteinDefinitionTaxonomy
Prolyl hydroxylase EGLN3A prolyl hydroxylase EGLN3 that is encoded in the genome of human. [PRO:DNx, UniProtKB:Q9H6Z9]Homo sapiens (human)
Prolyl 3-hydroxylase OGFOD1A prolyl 3-hydroxylase OGFOD1 that is encoded in the genome of human. [PRO:DNx, UniProtKB:Q8N543]Homo sapiens (human)
Bifunctional peptidase and (3S)-lysyl hydroxylase JMJD7A bifunctional peptidase and (3S)-lysyl hydroxylase JMJD7 that is encoded in the genome of human. [PRO:DNx, UniProtKB:P0C870]Homo sapiens (human)

Compounds (12)

CompoundDefinitionClassesRoles
alpha-ketoglutaric acid2-oxoglutaric acid : An oxo dicarboxylic acid that consists of glutaric acid bearing an oxo substituent at position 2. It is an intermediate metabolite in Krebs cycle.oxo dicarboxylic acidfundamental metabolite
2,5-pyridinedicarboxylic acid2,5-Pyridinedicarboxylic acid: RN given refers to parent cpd

isocinchomeronic acid : A pyridinedicarboxylic acid carrying carboxy groups at positions 2 and 5.
pyridinedicarboxylic acid
glycyrrhetinic acidcyclic terpene ketone;
hydroxy monocarboxylic acid;
pentacyclic triterpenoid
immunomodulator;
plant metabolite
2,4-pyridinedicarboxylic acidlutidinic acid : A pyridinedicarboxylic acid carrying carboxy groups at positions 2 and 4.pyridinedicarboxylic acid
oleanolic acidhydroxy monocarboxylic acid;
pentacyclic triterpenoid
plant metabolite
ursolic acidhydroxy monocarboxylic acid;
pentacyclic triterpenoid
geroprotector;
plant metabolite
betulinic acidhydroxy monocarboxylic acid;
pentacyclic triterpenoid
anti-HIV agent;
anti-inflammatory agent;
antimalarial;
antineoplastic agent;
EC 5.99.1.3 [DNA topoisomerase (ATP-hydrolysing)] inhibitor;
plant metabolite
maslinic acid(2Alpha,3beta)-2,3-dihydroxyolean-12-en-28-oic acid: from Luehea divaricata and Agrimonia eupatoriadihydroxy monocarboxylic acid;
pentacyclic triterpenoid
anti-inflammatory agent;
antineoplastic agent;
antioxidant;
plant metabolite
vidofludimusvidofludimus: a dihydroorotate dehydrogenase inhibitor; structure in first source
fg-4592roxadustat : An N-acylglycine resulting from the formal condensation of the amino group of glycine with the carboxy group of 4-hydroxy-1-methyl-7-phenoxyisoquinoline-3-carboxylic acid. It is an inhibitor of hypoxia inducible factor prolyl hydroxylase (HIF-PH).

roxadustat: structure in first source
aromatic ether;
isoquinolines;
N-acylglycine
EC 1.14.11.2 (procollagen-proline dioxygenase) inhibitor;
EC 1.14.11.29 (hypoxia-inducible factor-proline dioxygenase) inhibitor
ascorbic acidAscorbic Acid: A six carbon compound related to glucose. It is found naturally in citrus fruits and many vegetables. Ascorbic acid is an essential nutrient in human diets, and necessary to maintain connective tissue and bone. Its biologically active form, vitamin C, functions as a reducing agent and coenzyme in several metabolic pathways. Vitamin C is considered an antioxidant.

L-ascorbate : The L-enantiomer of ascorbate and conjugate base of L-ascorbic acid, arising from selective deprotonation of the 3-hydroxy group. Required for a range of essential metabolic reactions in all animals and plants.

L-ascorbic acid : The L-enantiomer of ascorbic acid and conjugate acid of L-ascorbate.

vitamin C : Any member of a group of vitamers that belong to the chemical structural class called butenolides that exhibit biological activity against vitamin C deficiency in animals. The vitamers include L-ascorbic acid and its salt, ionized and oxidized forms.
ascorbic acid;
vitamin C
coenzyme;
cofactor;
flour treatment agent;
food antioxidant;
food colour retention agent;
geroprotector;
plant metabolite;
skin lightening agent
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