Page last updated: 2024-10-24

serine family amino acid metabolic process

Definition

Target type: biologicalprocess

The chemical reactions and pathways involving amino acids of the serine family, comprising cysteine, glycine, homoserine, selenocysteine and serine. [GOC:ai]

The serine family amino acid metabolic process is a fundamental pathway in biology, responsible for the synthesis, breakdown, and interconversion of serine, glycine, and cysteine, which are essential for various cellular functions. This process involves multiple enzymatic reactions and is tightly regulated to maintain cellular homeostasis.

**Serine biosynthesis:**

* **3-phosphoglycerate dehydrogenase (PHGDH)** catalyzes the first committed step, converting 3-phosphoglycerate to 3-phosphohydroxypyruvate.
* **Phosphoserine aminotransferase (PSAT1)** then converts 3-phosphohydroxypyruvate to phosphoserine.
* **Phosphoserine phosphatase (PSPH)** dephosphorylates phosphoserine to yield serine.

**Glycine biosynthesis:**

* **Serine hydroxymethyltransferase (SHMT)** converts serine to glycine, transferring a one-carbon unit to tetrahydrofolate.
* **Glycine cleavage system (GCS)** is a multienzyme complex that degrades glycine to carbon dioxide, ammonia, and a one-carbon unit.

**Cysteine biosynthesis:**

* **Cystathionine beta-synthase (CBS)** catalyzes the condensation of serine with homocysteine to form cystathionine.
* **Cystathionine gamma-lyase (CSE)** cleaves cystathionine to yield cysteine and alpha-ketobutyrate.

**Metabolic regulation:**

* The serine family amino acid metabolic process is tightly regulated by the availability of substrates, cofactors, and allosteric effectors.
* Feedback mechanisms control the activity of key enzymes, ensuring the appropriate levels of these amino acids are maintained.
* Transcriptional and post-translational modifications also play a role in regulating the expression and activity of enzymes involved in this pathway.

**Cellular functions:**

* Serine is a precursor for various molecules, including sphingolipids, purines, and pyrimidines.
* Glycine is involved in collagen synthesis, glutathione metabolism, and neurotransmission.
* Cysteine is a component of proteins and serves as a precursor for glutathione, a major antioxidant.

**Clinical relevance:**

* Dysregulation of the serine family amino acid metabolic process is associated with various diseases, including cancer, neurodevelopmental disorders, and metabolic disorders.
* Mutations in genes encoding enzymes involved in this pathway can lead to specific metabolic disorders, such as serine deficiency and hyperglycinemia.

Overall, the serine family amino acid metabolic process is essential for maintaining cellular homeostasis and plays a critical role in various physiological processes.'
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Proteins (2)

ProteinDefinitionTaxonomy
Serine racemaseA serine racemase that is encoded in the genome of human. [PRO:DNx, UniProtKB:Q9GZT4]Homo sapiens (human)
C-1-tetrahydrofolate synthase, cytoplasmicA C-1-tetrahydrofolate synthase, cytoplasmic that is encoded in the genome of human. [PRO:DNx, UniProtKB:P11586]Homo sapiens (human)

Compounds (10)

CompoundDefinitionClassesRoles
benzoic acidaromatic carboxylic acid : Any carboxylic acid in which the carboxy group is directly bonded to an aromatic ring.

benzoic acid : A compound comprising a benzene ring core carrying a carboxylic acid substituent.

Benzoic Acid: A fungistatic compound that is widely used as a food preservative. It is conjugated to GLYCINE in the liver and excreted as hippuric acid.
benzoic acidsalgal metabolite;
antimicrobial food preservative;
drug allergen;
EC 1.13.11.33 (arachidonate 15-lipoxygenase) inhibitor;
EC 3.1.1.3 (triacylglycerol lipase) inhibitor;
human xenobiotic metabolite;
plant metabolite
glycinealpha-amino acid;
amino acid zwitterion;
proteinogenic amino acid;
serine family amino acid
EC 2.1.2.1 (glycine hydroxymethyltransferase) inhibitor;
fundamental metabolite;
hepatoprotective agent;
micronutrient;
neurotransmitter;
NMDA receptor agonist;
nutraceutical
malonic aciddicarboxylic acid : Any carboxylic acid containing two carboxy groups.

malonic acid : An alpha,omega-dicarboxylic acid in which the two carboxy groups are separated by a single methylene group.
alpha,omega-dicarboxylic acidhuman metabolite
thiophene-3-carboxylic acidthiophene-3-carboxylic acid: structure in first source
3-hydroxy-1-benzopyran-2-one3-hydroxycoumarin: Photoprotective from sea urchin gametes and embryonic cells; structure in first source

hydroxycoumarin : Any coumarin carrying at least one hydroxy substituent.
hydroxycoumarin
tricarballylic acidtricarballylic acid : A tricarboxylic acid that is glutaric acid in which one of the beta-hydrogens is substituted by a carboxy group.

tricarballylic acid: RN given refers to parent cpd
tricarboxylic acid
crotonic acidbutenoic acid : Any C4, straight-chain fatty acid containing one double bond.

crotonic acid : A but-2-enoic acid with a trans- double bond at C-2. It has been isolated from Daucus carota.

crotonic acid: a stereospecific unsaturated carboxylic acid found in CROTON OIL
2-butenoic acidplant metabolite
3-coumaric acid3-coumaric acid : A monohydroxycinnamic acid in which the hydroxy substituent is located at C-3 of the phenyl ring.

3-coumaric acid: RN given refers to cpd without isomeric designation in Chemline

trans-3-coumaric acid : A 3-coumaric acid that is phenol substituted with trans-2-propenoic acid at position C-3.
3-coumaric acid
sun
5-methyltetrahydrohomofolic acid5-methyltetrahydrohomofolic acid: RN given refers to parent cpd