Page last updated: 2024-10-24

phosphoserine residue binding

Definition

Target type: molecularfunction

Binding to a phosphorylated serine residue within a protein. [GOC:ai]

Phosphoserine residue binding is a molecular function that involves the specific recognition and interaction of a protein or other molecule with a phosphoserine residue. This interaction is critical for various cellular processes, including signal transduction, protein regulation, and enzymatic activity.

Phosphoserine residues are formed by the phosphorylation of serine residues, a common post-translational modification that alters the properties of a protein. The phosphate group attached to the serine residue introduces a negatively charged group, creating a binding site for proteins or other molecules that contain positively charged residues or other groups that can interact with the phosphate group.

The molecular mechanism of phosphoserine residue binding involves the formation of non-covalent interactions, such as electrostatic interactions, hydrogen bonds, and hydrophobic interactions, between the phosphoserine residue and the binding site of the interacting molecule.

**Specific examples of the role of phosphoserine residue binding in cellular processes include:**

* **Signal transduction:** Phosphorylation of serine residues in signaling proteins often acts as a switch to activate or deactivate downstream signaling pathways. Proteins with phosphoserine residue binding domains recognize and interact with these phosphorylated proteins, relaying the signal further.
* **Protein regulation:** Phosphorylation of serine residues can alter the conformation and activity of proteins. Binding of proteins with phosphoserine residue binding domains can further regulate protein activity by stabilizing specific conformations or by recruiting other proteins to the complex.
* **Enzymatic activity:** Phosphorylation of serine residues in enzymes can modulate their catalytic activity. Binding of proteins with phosphoserine residue binding domains can activate or inhibit enzymatic activity by influencing substrate binding or product release.

**Proteins that contain phosphoserine residue binding domains are often involved in:**

* **Protein kinases:** These enzymes catalyze the phosphorylation of serine residues.
* **Phosphatases:** These enzymes remove the phosphate group from phosphoserine residues.
* **Scaffolding proteins:** These proteins bind to multiple signaling proteins and organize them into signaling complexes.
* **Transcription factors:** These proteins bind to DNA and regulate gene expression.

**Overall, phosphoserine residue binding is a fundamental molecular mechanism that plays a crucial role in a wide range of cellular processes. It is essential for maintaining cellular homeostasis and regulating cellular responses to external stimuli.**'
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Proteins (3)

ProteinDefinitionTaxonomy
Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1A peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 that is encoded in the genome of human. [PRO:DNx, UniProtKB:Q13526]Homo sapiens (human)
14-3-3 protein zeta/deltaA 14-3-3 protein zeta/delta that is encoded in the genome of human. [PRO:DNx]Homo sapiens (human)
14-3-3 protein beta/alphaA 14-3-3 protein beta/alpha that is encoded in the genome of human. [PRO:WCB, UniProtKB:P31946]Homo sapiens (human)

Compounds (10)

CompoundDefinitionClassesRoles
juglonejuglone : A hydroxy-1,4-naphthoquinone that is 1,4-naphthoquinone in which the hydrogen at position 5 has been replaced by a hydroxy group. A plant-derived 1,4-naphthoquinone with confirmed antibacterial and antitumor activities.

juglone: structure
hydroxy-1,4-naphthoquinonegeroprotector;
herbicide;
reactive oxygen species generator
cycloheximidecycloheximide : A dicarboximide that is 4-(2-hydroxyethyl)piperidine-2,6-dione in which one of the hydrogens attached to the carbon bearing the hydroxy group is replaced by a 3,5-dimethyl-2-oxocyclohexyl group. It is an antibiotic produced by the bacterium Streptomyces griseus.

Cycloheximide: Antibiotic substance isolated from streptomycin-producing strains of Streptomyces griseus. It acts by inhibiting elongation during protein synthesis.
antibiotic fungicide;
cyclic ketone;
dicarboximide;
piperidine antibiotic;
piperidones;
secondary alcohol
anticoronaviral agent;
bacterial metabolite;
ferroptosis inhibitor;
neuroprotective agent;
protein synthesis inhibitor
1,4-naphthoquinone1,4-naphthoquinone : The parent structure of the family of 1,4-naphthoquinones, in which the oxo groups of the quinone moiety are at positions 1 and 4 of the naphthalene ring. Derivatives have pharmacological properties.

naphthoquinone : A polycyclic aromatic ketone metabolite of naphthalene.
1,4-naphthoquinones
glycyrrhetinic acidcyclic terpene ketone;
hydroxy monocarboxylic acid;
pentacyclic triterpenoid
immunomodulator;
plant metabolite
epigallocatechin gallate(-)-epigallocatechin 3-gallate : A gallate ester obtained by the formal condensation of gallic acid with the (3R)-hydroxy group of (-)-epigallocatechin.

epigallocatechin gallate: a steroid 5alpha-reductase inhibitor and antimutagen in green tea (Camellia sinensis)
flavans;
gallate ester;
polyphenol
antineoplastic agent;
antioxidant;
apoptosis inducer;
geroprotector;
Hsp90 inhibitor;
neuroprotective agent;
plant metabolite
propazolepropazole: RN given refers to parent cpd; structurebenzimidazoles
tretinoinall-trans-retinoic acid : A retinoic acid in which all four exocyclic double bonds have E- (trans-) geometry.

retinoic acid : A retinoid consisting of 3,7-dimethylnona-2,4,6,8-tetraenoic acid substituted at position 9 by a 2,6,6-trimethylcyclohex-1-en-1-yl group (geometry of the four exocyclic double bonds is not specified).

Tretinoin: An important regulator of GENE EXPRESSION during growth and development, and in NEOPLASMS. Tretinoin, also known as retinoic acid and derived from maternal VITAMIN A, is essential for normal GROWTH; and EMBRYONIC DEVELOPMENT. An excess of tretinoin can be teratogenic. It is used in the treatment of PSORIASIS; ACNE VULGARIS; and several other SKIN DISEASES. It has also been approved for use in promyelocytic leukemia (LEUKEMIA, PROMYELOCYTIC, ACUTE).
retinoic acid;
vitamin A
anti-inflammatory agent;
antineoplastic agent;
antioxidant;
AP-1 antagonist;
human metabolite;
keratolytic drug;
retinoic acid receptor agonist;
retinoid X receptor agonist;
signalling molecule
mrs2159MRS2159: an antagonist of both P2X1 and P2X7 receptors
acetyl-11-ketoboswellic acidacetyl-11-ketoboswellic acid: a 5-lipoxygenase inhibitor; structure given in first sourcetriterpenoid
r18 peptideR18 peptide: a 20-mer peptide, derived from a phage library, that binds 14-3-3 tau protein; amino acid sequence in first source