Page last updated: 2024-10-24

sphingolipid binding

Definition

Target type: molecularfunction

Binding to a sphingolipid, a class of lipids containing the long-chain amine diol sphingosine or a closely related base (a sphingoid). [ISBN:0198506732]

Sphingolipid binding is a molecular function that involves the interaction of proteins with sphingolipids, a class of lipids that play crucial roles in various cellular processes. Sphingolipids are structurally diverse and encompass a wide range of molecules, including ceramides, sphingomyelins, and glycosphingolipids. Their diverse structures and functions make them essential components of cellular membranes, where they contribute to membrane fluidity, stability, and signaling.

The binding of proteins to sphingolipids can occur through various mechanisms, including hydrophobic interactions, hydrogen bonding, and electrostatic interactions. These interactions are often mediated by specific domains within the protein, such as the lipid-binding domain or the sphingolipid-binding domain.

The molecular function of sphingolipid binding encompasses a wide range of activities that are critical for cellular function, including:

* **Membrane organization and trafficking:** Sphingolipid binding proteins play a role in regulating the organization and trafficking of cellular membranes. By interacting with sphingolipids, these proteins can influence membrane fluidity, curvature, and the formation of membrane domains.
* **Signal transduction:** Sphingolipids are key signaling molecules that mediate a variety of cellular responses, including cell growth, differentiation, apoptosis, and inflammation. Sphingolipid binding proteins can act as receptors for sphingolipids, mediating downstream signaling pathways.
* **Cellular recognition and adhesion:** Sphingolipids can act as ligands for cell adhesion molecules, facilitating cell-cell interactions and the formation of tissues. Sphingolipid binding proteins can mediate these interactions.
* **Immune response:** Sphingolipids and their binding proteins are involved in the regulation of the immune response, including the activation and differentiation of immune cells.

The specific molecular function of a sphingolipid binding protein is often determined by the type of sphingolipid it binds to, the domain structure of the protein, and the cellular context. Dysregulation of sphingolipid binding can lead to a range of diseases, including cancer, neurodegenerative disorders, and cardiovascular diseases.

Understanding the molecular function of sphingolipid binding is crucial for developing novel therapeutic strategies for these diseases.'
"

Proteins (1)

ProteinDefinitionTaxonomy
Sphingosine 1-phosphate receptor 1A sphingosine 1-phosphate receptor 1 that is encoded in the genome of human. [PRO:WCB, UniProtKB:P21453]Homo sapiens (human)

Compounds (16)

CompoundDefinitionClassesRoles
fingolimod hydrochloridefingolimod hydrochloride : The hydrochloride salt of 2-amino-2-[2-(4-octylphenyl) ethyl]-1,3-propanediol (fingolimod).

Fingolimod Hydrochloride: A sphingosine-derivative and IMMUNOSUPPRESSIVE AGENT that blocks the migration and homing of LYMPHOCYTES to the CENTRAL NERVOUS SYSTEM through its action on SPHINGOSINE 1-PHOSPHATE RECEPTORS. It is used in the treatment of MULTIPLE SCLEROSIS.
hydrochlorideimmunosuppressive agent;
prodrug;
sphingosine-1-phosphate receptor agonist
fingolimodfingolimod : An aminodiol that consists of propane-1,3-diol having amino and 2-(4-octylphenyl)ethyl substituents at the 2-position. It is a sphingosine 1-phosphate receptor modulator used for the treatment of relapsing-remitting multiple sclerosis. A prodrug, fingolimod is phosphorylated by sphingosine kinase to active metabolite fingolimod-phosphate, a structural analogue of sphingosine 1-phosphate.aminodiol;
primary amino compound
antineoplastic agent;
CB1 receptor antagonist;
immunosuppressive agent;
prodrug;
sphingosine-1-phosphate receptor agonist
sew2871SEW2871: structure in first sourceoxadiazole;
ring assembly
sphingosine 1-phosphatesphingosine 1-phosphate : A phosphosphingolipid that consists of sphingosine having a phospho group attached at position 1

sphingosine 1-phosphate: RN given refers to (R-(R*,S*-(E)))-isomer; RN for cpd without isomeric designation not available 8/89
sphingoid 1-phosphatemouse metabolite;
signalling molecule;
sphingosine-1-phosphate receptor agonist;
T-cell proliferation inhibitor;
vasodilator agent
N-cyclohexyl-5-propyl-3-isoxazolecarboxamidearomatic amide;
heteroarene
N,N-dicyclohexyl-5-propyl-3-isoxazolecarboxamidearomatic amide;
heteroarene
fty 720pfingolimod phosphate : A primary amino compound that is fingolimod in which one on the hydroxy groups has been converted into its dihydrogen phosphate derivative. It is the active metabolite of fingolimod.monoalkyl phosphate;
primary alcohol;
primary amino compound
antineoplastic agent;
immunosuppressive agent;
sphingosine-1-phosphate receptor agonist
jte 013JTE 013: an Edg-5 antagonist

JTE-013 : A semicarbazide derivative that is semicarbazide in which the amino group at position 2 is replaced by a [1,3-dimethyl-4-(propan-2-yl)-1H-pyrazolo[3,4-b]pyridin-6-yl]amino group and the amino group adjacent to the carbonyl is replaced by a (2,6-dichloropyridin-4-yl)amino group. It is a potent S1P2 antagonist (IC50 = 17.6 nM).
chloropyridine;
pyrazolopyridine
anti-asthmatic agent;
anti-inflammatory agent;
antineoplastic agent;
osteogenesis regulator;
pro-angiogenic agent;
sphingosine-1-phosphate receptor 2 antagonist
auy 954AUY 954: an S1P(1) receptor agonist; structure in first source
ponesimodponesimod: structure in first source
fty 720p
VPC 23019VPC 23019 : A secondary carboxamide resulting from the formal condensation of the carboxy group of O-phospho-D-serine with the amino group of m-octylaniline. An analogue of sphingosine-1-phosphate (S1P), it is a potent antagonist for both S1P1 and S1P3 receptors. It can inhibit S1P-induced migration of thyroid cancer cells, ovarian cancer cells, and neural stem cells.

VPC23019: inhibits S1P3 receptor; structure in first source
aromatic amide;
D-serine derivative;
organic phosphate;
phosphoric ester;
secondary carboxamide
sphingosine-1-phosphate receptor 1 antagonist;
sphingosine-1-phosphate receptor 3 antagonist
gw9508GW9508: structure in first sourcearomatic amine
cs-2100
cym-5442oxadiazole;
ring assembly
siponimodsiponimod: S1P receptor modulator