Page last updated: 2024-10-24

autophagy of peroxisome

Definition

Target type: biologicalprocess

The process in which peroxisomes are delivered to a type of vacuole and degraded in response to changing nutrient conditions. [GOC:autophagy, PMID:10547367, PMID:20083110]

Autophagy of peroxisomes, also known as pexophagy, is a highly regulated cellular process essential for the degradation and removal of dysfunctional or surplus peroxisomes. This process is crucial for maintaining cellular homeostasis and preventing the accumulation of toxic byproducts.

The process begins with the recognition of the target peroxisome. This recognition is mediated by specific proteins, including the autophagy receptor proteins p62/SQSTM1 and NBR1, which bind to ubiquitin chains attached to the peroxisome surface. Ubiquitination of peroxisomes often occurs due to oxidative stress, aging, or other forms of damage.

Once the target peroxisome is recognized, it is engulfed by a double-membrane structure called an autophagosome. This engulfment process is driven by the formation of a phagophore, a cup-shaped membrane structure that expands and encloses the peroxisome. The phagophore then closes, forming the autophagosome.

The autophagosome subsequently fuses with lysosomes, which are organelles containing hydrolytic enzymes. The fusion of these two compartments creates a hybrid organelle called an autolysosome. The hydrolytic enzymes within the autolysosome degrade the peroxisome's contents, including its proteins, lipids, and DNA.

The degradation products of the peroxisome are then recycled back into the cytoplasm, where they can be reused for other cellular processes. This recycling process ensures that the cellular building blocks are not wasted and can be used to generate new molecules.

Pexophagy is a highly regulated process involving numerous proteins and signaling pathways. Some key regulators of pexophagy include the Atg proteins, which are essential for the formation of autophagosomes, and the TORC1 complex, which senses nutrient availability and regulates autophagy initiation.

Pexophagy plays critical roles in various cellular processes, including:

* **Maintaining peroxisome quality control:** By removing damaged or dysfunctional peroxisomes, pexophagy prevents the accumulation of toxic substances and ensures the proper function of the peroxisome population.
* **Regulating peroxisome number:** Pexophagy helps to maintain the appropriate number of peroxisomes in the cell by degrading excess organelles.
* **Responding to cellular stress:** Pexophagy is induced under conditions of stress, such as starvation or oxidative stress, allowing the cell to recycle cellular components for energy production and survival.

Dysregulation of pexophagy has been implicated in various human diseases, including neurodegenerative disorders, metabolic diseases, and cancer. Understanding the complex mechanisms of pexophagy is crucial for developing therapeutic strategies for these conditions.'
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Proteins (1)

ProteinDefinitionTaxonomy
Phosphatidylinositol 3-kinase catalytic subunit type 3A phosphatidylinositol 3-kinase catalytic subunit type 3 that is encoded in the genome of human. [PRO:DNx]Homo sapiens (human)

Compounds (23)

CompoundDefinitionClassesRoles
ML162ML162 : A monochlorobenzene that is benzene substituted by (chloroacetyl){2-oxo-2-[(2-phenylethyl)amino]-1-(thiophen-2-yl)ethyl}amino, chloro and methoxy groups at positions 1, 3 and 4, respectively. It is a covalent inhibitor of glutathione peroxidase 4 (GPX4) that induces ferroptosis in cells.monochlorobenzenes;
monomethoxybenzene;
organochlorine compound;
secondary carboxamide;
tertiary carboxamide;
thiophenes
EC 1.11.1.9 (glutathione peroxidase) inhibitor;
ferroptosis inducer
PI3-Kinase alpha Inhibitor 2organic heterobicyclic compound;
organonitrogen heterocyclic compound;
organosulfur heterocyclic compound
idelalisibidelalisib : A member of the class of quinazolines that is 5-fluoro-3-phenylquinazolin-4-one in which the hydrogen at position 2 is replaced by a (1S)-1-(3H-purin-6-ylamino)propyl group. used for for the treatment of refractory indolent non-Hodgkin's lymphoma and relapsed chronic lymphocytic leukemia.

idelalisib: an antineoplastic agent and p110delta inhibitor; structure in first source
aromatic amine;
organofluorine compound;
purines;
quinazolines;
secondary amino compound
antineoplastic agent;
apoptosis inducer;
EC 2.7.1.137 (phosphatidylinositol 3-kinase) inhibitor
zstk474ZSTK-474 : A triamino-1,3,5-triazine that is 1,3,5-triazine in which two of the hydrogens have been replaced by morpholin-4-yl groups while the third hydrogen has been replaced by a 2-(difluoromethyl)benzimidazol-1-yl group. It is an inhibitor of phosphatidylinositol 3-kinase.benzimidazoles;
morpholines;
organofluorine compound;
triamino-1,3,5-triazine
antineoplastic agent;
EC 2.7.1.137 (phosphatidylinositol 3-kinase) inhibitor
dactolisibdactolisib : An imidazoquinoline that is 3-methyl-2-oxo-2,3-dihydro-1H-imidazo[4,5-c]quinoline substituted at position 1 by a 4-(1-cyanoisopropyl)phenyl group and at position 8 by a quinolin-3-yl group. A dual PI3K/mTOR inhibitor used in cancer treatment.

dactolisib: antineoplastic agent that inhibits both phosphatidylinositol 3-kinase and mTOR
imidazoquinoline;
nitrile;
quinolines;
ring assembly;
ureas
antineoplastic agent;
EC 2.7.1.137 (phosphatidylinositol 3-kinase) inhibitor;
mTOR inhibitor
ku 60019
buparlisibNVP-BKM120: a pan class I PI3 kinase inhibitor with antineoplastic activity; structure in first sourceaminopyridine;
aminopyrimidine;
morpholines;
organofluorine compound
antineoplastic agent;
EC 2.7.1.137 (phosphatidylinositol 3-kinase) inhibitor
gdc 0941pictrelisib : A sulfonamide composed of indazole, morpholine, and methylsulfonyl-substituted piperazine rings bound to a thienopyrimidine ring.indazoles;
morpholines;
piperazines;
sulfonamide;
thienopyrimidine
EC 2.7.1.137 (phosphatidylinositol 3-kinase) inhibitor
gdc 0980
azd2014vistusertib: potent and selective dual mTORC1 and mTORC2 inhibitor; structure in first source
pki 587gedatolisib: inhibits both phosphatidylinositol 3-kinase and mTOR; structure in first source
5-(4-amino-1-propan-2-yl-3-pyrazolo[3,4-d]pyrimidinyl)-1,3-benzoxazol-2-aminesapanisertib: an mTOR inhibitorbenzoxazole
ch 5132799CH 5132799: structure in first source
torin 1torin 1 : A member of the class of pyridoquinolines that is 9-(quinolin-3-yl)benzo[h][1,6]naphthyridin-2-one bearing an additional 4-(4-propionylpiperazin-1-yl)-3-(trifluoromethyl)phenyl substituent at position 1. It is a potent inhibitor of mTOR and exhibits anti-cancer properties.N-acylpiperazine;
N-arylpiperazine;
organofluorine compound;
pyridoquinoline;
quinolines
antineoplastic agent;
mTOR inhibitor
gdc-0032
spautin-1
torin 2torin 2 : A member of the class of pyridoquinolines that is benzo[h][1,6]naphthyridin-2-one carrying additional 3-(trifluoromethyl)phenyl and 6-aminopyridin-3-yl substituents at positions 1 and 9 respectively. It is a potent inhibitor of mTOR and exhibits anti-cancer properties.aminopyridine;
organofluorine compound;
primary amino compound;
pyridoquinoline
antineoplastic agent;
mTOR inhibitor
cudc-907
sar245408
byl719proline derivative
amg 511AMG 511: structure in first source
cc-223
sar405SAR405: a Vps34 inhibitor with antineoplastic activity; structure in first source