Page last updated: 2024-10-24

negative regulation of biosynthetic process

Definition

Target type: biologicalprocess

Any process that stops, prevents, or reduces the rate of the chemical reactions and pathways resulting in the formation of substances. [GOC:go_curators]

Negative regulation of biosynthetic process refers to the control mechanisms that decrease or inhibit the production of molecules within an organism. This intricate process involves a diverse range of molecular players, including enzymes, regulatory proteins, and signaling molecules, working together to fine-tune the synthesis of essential components like proteins, lipids, carbohydrates, and nucleic acids.

Here's a detailed breakdown of the biological mechanisms involved:

**1. Transcriptional Regulation:**
- Repressors bind to specific DNA sequences, blocking the transcription of genes involved in biosynthesis.
- MicroRNAs (miRNAs) can target mRNAs encoding biosynthetic enzymes, inhibiting their translation.

**2. Post-Transcriptional Regulation:**
- Proteins can bind to mRNA transcripts, preventing their translation into proteins.
- RNA interference (RNAi) mechanisms use small interfering RNAs (siRNAs) to degrade target mRNAs.

**3. Enzymatic Regulation:**
- Feedback inhibition: Products of biosynthetic pathways can act as inhibitors of the enzymes involved in their own synthesis, preventing overproduction.
- Allosteric regulation: Binding of regulatory molecules to enzymes alters their activity, modulating the rate of biosynthesis.

**4. Signaling Pathways:**
- Intracellular signaling cascades: Signals triggered by environmental cues or cellular stress can activate or inhibit specific biosynthetic pathways.
- Intercellular communication: Hormones and other signaling molecules can modulate biosynthesis in target cells.

**5. Cellular Compartmentalization:**
- Subcellular localization of enzymes and regulatory proteins controls the availability of substrates and the efficiency of biosynthesis.

**6. Proteolytic Degradation:**
- Degradation of biosynthetic enzymes or regulatory proteins can modulate the activity of biosynthetic pathways.

**7. Feedback loops:**
- Negative feedback loops ensure that the levels of biosynthetic products remain within a defined range, preventing excessive accumulation or depletion.

**Importance of Negative Regulation:**

- Maintaining cellular homeostasis: Prevents overproduction of molecules, which can be toxic or disrupt cellular processes.
- Optimizing resource allocation: Prevents unnecessary expenditure of energy and resources on biosynthesis.
- Responding to environmental changes: Allows cells to adapt to fluctuating conditions by adjusting the rates of biosynthetic processes.
- Preventing disease: Dysregulation of negative regulation can lead to metabolic disorders, cancer, and other diseases.

In essence, negative regulation of biosynthetic processes is a crucial aspect of cellular life, enabling precise control over the production of essential molecules and maintaining cellular equilibrium.'
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Proteins (1)

ProteinDefinitionTaxonomy
Glutathione S-transferase PA glutathione S-transferase P that is encoded in the genome of human. [PRO:DNx, UniProtKB:P09211]Homo sapiens (human)

Compounds (10)

CompoundDefinitionClassesRoles
ethacrynic acidetacrynic acid : An aromatic ether that is phenoxyacetic acid in which the phenyl ring is substituted by chlorines at positions 2 and 3, and by a 2-methylidenebutanoyl group at position 4. It is a loop diuretic used to treat high blood pressure resulting from diseases such as congestive heart failure, liver failure, and kidney failure. It is also a glutathione S-transferase (EC 2.5.1.18) inhibitor.

Ethacrynic Acid: A compound that inhibits symport of sodium, potassium, and chloride primarily in the ascending limb of Henle, but also in the proximal and distal tubules. This pharmacological action results in excretion of these ions, increased urinary output, and reduction in extracellular fluid. This compound has been classified as a loop or high ceiling diuretic.
aromatic ether;
aromatic ketone;
dichlorobenzene;
monocarboxylic acid
EC 2.5.1.18 (glutathione transferase) inhibitor;
ion transport inhibitor;
loop diuretic
d-alpha tocopherol(R,R,R)-alpha-tocopherol : An alpha-tocopherol that has R,R,R configuration. The naturally occurring stereoisomer of alpha-tocopherol, it is found particularly in sunflower and olive oils.

tocopherol : A collective name for a group of closely related lipids that contain a chroman-6-ol nucleus substituted at position 2 by a methyl group and by a saturated hydrocarbon chain consisting of three isoprenoid units. They are designated as alpha-, beta-, gamma-, and delta-tocopherol depending on the number and position of additional methyl substituents on the aromatic ring. Tocopherols occur in vegetable oils and vegetable oil products, almost exclusively with R,R,R configuration. Tocotrienols differ from tocopherols only in having three double bonds in the hydrocarbon chain.

vitamin E : Any member of a group of fat-soluble chromanols that exhibit biological activity against vitamin E deficiency. The vitamers in this class consists of a chroman-6-ol core which is substituted at position 2 by a methyl group and (also at position 2) either a saturated or a triply-unsaturated hydrocarbon chain consisting of three isoprenoid units. The major function of vitamin E is to act as a natural antioxidant by scavenging free radicals and molecular oxygen.

Vitamin E: A generic descriptor for all TOCOPHEROLS and TOCOTRIENOLS that exhibit ALPHA-TOCOPHEROL activity. By virtue of the phenolic hydrogen on the 2H-1-benzopyran-6-ol nucleus, these compounds exhibit varying degree of antioxidant activity, depending on the site and number of methyl groups and the type of ISOPRENOIDS.
alpha-tocopherolalgal metabolite;
antiatherogenic agent;
anticoagulant;
antioxidant;
antiviral agent;
EC 2.7.11.13 (protein kinase C) inhibitor;
immunomodulator;
micronutrient;
nutraceutical;
plant metabolite
hexylglutathioneS-hexylglutathione : An S-substituted glutathione that is glutathione in which the hydrogen of the thiol has been replaced by a hexyl group (PDB entry: 1PN9).S-substituted glutathione
5-chloromethylfluorescein diacetateacetate esterfluorochrome
malagashaninemalagashanine: from Strychnos sp.; structure given in first source
curcumincurcumin : A beta-diketone that is methane in which two of the hydrogens are substituted by feruloyl groups. A natural dyestuff found in the root of Curcuma longa.

Curcumin: A yellow-orange dye obtained from tumeric, the powdered root of CURCUMA longa. It is used in the preparation of curcuma paper and the detection of boron. Curcumin appears to possess a spectrum of pharmacological properties, due primarily to its inhibitory effects on metabolic enzymes.
aromatic ether;
beta-diketone;
diarylheptanoid;
enone;
polyphenol
anti-inflammatory agent;
antifungal agent;
antineoplastic agent;
biological pigment;
contraceptive drug;
dye;
EC 1.1.1.205 (IMP dehydrogenase) inhibitor;
EC 1.1.1.21 (aldehyde reductase) inhibitor;
EC 1.1.1.25 (shikimate dehydrogenase) inhibitor;
EC 1.6.5.2 [NAD(P)H dehydrogenase (quinone)] inhibitor;
EC 1.8.1.9 (thioredoxin reductase) inhibitor;
EC 2.7.10.2 (non-specific protein-tyrosine kinase) inhibitor;
EC 3.5.1.98 (histone deacetylase) inhibitor;
flavouring agent;
food colouring;
geroprotector;
hepatoprotective agent;
immunomodulator;
iron chelator;
ligand;
lipoxygenase inhibitor;
metabolite;
neuroprotective agent;
nutraceutical;
radical scavenger
ellagic acidcatechols;
cyclic ketone;
lactone;
organic heterotetracyclic compound;
polyphenol
antioxidant;
EC 1.14.18.1 (tyrosinase) inhibitor;
EC 2.3.1.5 (arylamine N-acetyltransferase) inhibitor;
EC 2.4.1.1 (glycogen phosphorylase) inhibitor;
EC 2.5.1.18 (glutathione transferase) inhibitor;
EC 2.7.1.127 (inositol-trisphosphate 3-kinase) inhibitor;
EC 2.7.1.151 (inositol-polyphosphate multikinase) inhibitor;
EC 2.7.4.6 (nucleoside-diphosphate kinase) inhibitor;
EC 2.7.7.7 (DNA-directed DNA polymerase) inhibitor;
EC 5.99.1.2 (DNA topoisomerase) inhibitor;
EC 5.99.1.3 [DNA topoisomerase (ATP-hydrolysing)] inhibitor;
food additive;
fungal metabolite;
geroprotector;
plant metabolite;
skin lightening agent
2-crotonyloxymethyl-2-cyclohexenone2-crotonyloxymethyl-2-cyclohexenone: structure given in first source
6-(7-nitro-2,1,3-benzoxadiazol-4-ylthio)hexanol6-(7-nitro-2,1,3-benzoxadiazol-4-ylthio)hexanol: a specific glutathione S-transferase inhibitor; structure in first source
flavellagic acidflavellagic acid: RN given refers to parent cpd; structure