Page last updated: 2024-10-24

glycine metabolic process

Definition

Target type: biologicalprocess

The chemical reactions and pathways involving glycine, aminoethanoic acid. [GOC:go_curators]

Glycine metabolism is a complex and vital biological process involving the synthesis, breakdown, and utilization of glycine. Glycine, the simplest amino acid, plays a crucial role in various cellular functions, including protein synthesis, collagen formation, detoxification, and neurotransmission.

**Glycine Synthesis:**
- Glycine is primarily synthesized from serine via the enzyme serine hydroxymethyltransferase (SHMT), which catalyzes the transfer of a one-carbon unit from tetrahydrofolate to serine.
- Glycine can also be synthesized from glyoxylate, a precursor of the glyoxylate cycle, through the action of glyoxylate reductase.

**Glycine Breakdown:**
- Glycine breakdown primarily occurs through the glycine cleavage system, a multi-enzyme complex that converts glycine to carbon dioxide, ammonia, and methylenetetrahydrofolate.
- This process is catalyzed by the following enzymes: glycine decarboxylase (GLDC), aminomethyltransferase (AMT), and tetrahydrofolate reductase (THF reductase).

**Glycine Utilization:**
- Glycine serves as a building block for proteins and peptides, including collagen, elastin, and glutathione.
- It is involved in the biosynthesis of purines and porphyrins, essential components of DNA and heme, respectively.
- Glycine acts as a neurotransmitter in the central nervous system, mediating inhibitory signals.
- It plays a role in detoxification, particularly in the breakdown of toxic substances like formaldehyde.

**Regulation of Glycine Metabolism:**
- The activity of enzymes involved in glycine metabolism, such as SHMT and GLDC, is tightly regulated by factors like substrate availability, cofactor levels, and metabolic demands.
- Hormones like insulin and glucagon can also influence glycine metabolism by altering enzyme activity.

**Clinical Significance:**
- Defects in glycine metabolism can lead to various disorders, such as nonketotic hyperglycinemia, a severe neurological disorder characterized by high levels of glycine in the blood.
- Glycine deficiency can also occur, potentially leading to impaired protein synthesis and collagen production.

In summary, glycine metabolism is a fundamental process involving synthesis, breakdown, and utilization of this crucial amino acid. Its intricate pathways are essential for various cellular functions, and disruptions in glycine metabolism can have significant clinical implications.'
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Proteins (4)

ProteinDefinitionTaxonomy
Serine hydroxymethyltransferase, mitochondrialA serine hydroxymethyltransferase, mitochondrial that is encoded in the genome of human. [PRO:DNx, UniProtKB:P34897]Homo sapiens (human)
Serine hydroxymethyltransferase, cytosolicA serine hydroxymethyltransferase, cytosolic that is encoded in the genome of human. [PRO:DNx, UniProtKB:P34896]Homo sapiens (human)
Trifunctional purine biosynthetic protein adenosine-3A trifunctional purine biosynthetic protein adenosine-3 that is encoded in the genome of human. [PRO:DNx, UniProtKB:P22102]Homo sapiens (human)
D-3-phosphoglycerate dehydrogenaseA D-3-phosphoglycerate dehydrogenase that is encoded in the genome of human. [PRO:DNx, UniProtKB:O43175]Homo sapiens (human)

Compounds (14)

CompoundDefinitionClassesRoles
oxaprozinoxaprozin : A monocarboxylic acid that is a propionic acid derivative having a 4,5-diphenyl-1,3-oxazol-2-yl substituent at position 3. It is non-steroidal anti-inflammatory drug commonly used to relieve the pain and inflammatory responses associated with osteoarthritis and rheumatoid arthritis.

Oxaprozin: An oxazole-propionic acid derivative, cyclooxygenase inhibitor, and non-steroidal anti-inflammatory drug that is used in the treatment of pain and inflammation associated with of OSTEOARTHRITIS; RHEUMATOID ARTHRITIS; and ARTHRITIS, JUVENILE.
1,3-oxazoles;
monocarboxylic acid
analgesic;
non-steroidal anti-inflammatory drug
papaverinepapaverine : A benzylisoquinoline alkaloid that is isoquinoline substituted by methoxy groups at positions 6 and 7 and a 3,4-dimethoxybenzyl group at position 1. It has been isolated from Papaver somniferum.

Papaverine: An alkaloid found in opium but not closely related to the other opium alkaloids in its structure or pharmacological actions. It is a direct-acting smooth muscle relaxant used in the treatment of impotence and as a vasodilator, especially for cerebral vasodilation. The mechanism of its pharmacological actions is not clear, but it apparently can inhibit phosphodiesterases and it may have direct actions on calcium channels.
benzylisoquinoline alkaloid;
dimethoxybenzene;
isoquinolines
antispasmodic drug;
vasodilator agent
primaquineprimaquine : An N-substituted diamine that is pentane-1,4-diamine substituted by a 6-methoxyquinolin-8-yl group at the N(4) position. It is a drug used in the treatment of malaria and Pneumocystis pneumonia.

Primaquine: An aminoquinoline that is given by mouth to produce a radical cure and prevent relapse of vivax and ovale malarias following treatment with a blood schizontocide. It has also been used to prevent transmission of falciparum malaria by those returning to areas where there is a potential for re-introduction of malaria. Adverse effects include anemias and GI disturbances. (From Martindale, The Extra Pharmacopeia, 30th ed, p404)
aminoquinoline;
aromatic ether;
N-substituted diamine
antimalarial
flupirtineflupirtine: RN given refers to parent cpd without isomeric designationaminopyridine
duloxetineduloxetine
methotrexatedicarboxylic acid;
monocarboxylic acid amide;
pteridines
abortifacient;
antimetabolite;
antineoplastic agent;
antirheumatic drug;
dermatologic drug;
DNA synthesis inhibitor;
EC 1.5.1.3 (dihydrofolate reductase) inhibitor;
immunosuppressive agent
N-[7-(2-furanyl)-5-oxo-7,8-dihydro-6H-quinazolin-2-yl]acetamidequinazolines
pyrviniumpyrvinium : A quinolinium ion that is 1-methylquinolinium substituted by dimethylamino group at position 6 and a (E)-2-(2,5-dimethyl-1-phenyl-1H-pyrrol-3-yl)ethenyl at position 2. It is a anthelminthic drug active against pinworms. The salts of pyrvinium can also be used as anticancer agents.

pyrvinium: RN given refers to parent cpd; synonyms vanquin & vankin refer to pamoate[2:1]; structure in Merck Index, 9th ed, #7810
quinolinium ionanthelminthic drug;
antineoplastic agent
2-(2-furanylmethyl)-3-[[2-(3-pyridinyl)-3H-benzimidazol-5-yl]amino]-3H-isoindol-1-oneisoindoles
gw2974GW2974: quinazoline derivative, which is able to block the activation of both the EGFR and erbB2pyridopyrimidine
N-(4,6-dimethyl-2-pyridinyl)-4-[5-(trifluoromethyl)-2-pyridinyl]-1-piperazinecarbothioamidepiperazines;
pyridines
5,11-methenyltetrahydrohomofolate
pemetrexedpemetrexed disodium : An organic sodium salt that is the disodium salt of N-{4-[2-(2-amino-4-oxo-4,7-dihydro-1H-pyrrolo[2,3-d]pyrimidin-5-yl)ethyl]benzoyl}-L-glutamic acid. Inhibits thymidylate synthase (TS), 421 dihydrofolate reductase (DHFR), and glycinamide ribonucleotide formyltransferase (GARFT).N-acyl-L-glutamic acid;
pyrrolopyrimidine
antimetabolite;
antineoplastic agent;
EC 1.5.1.3 (dihydrofolate reductase) inhibitor;
EC 2.1.1.45 (thymidylate synthase) inhibitor;
EC 2.1.2.2 (phosphoribosylglycinamide formyltransferase) inhibitor
lometrexollometrexol: RN & structure given in first source;