Page last updated: 2024-10-24

lumenal side of lysosomal membrane

Definition

Target type: cellularcomponent

The side (leaflet) of the lysosomal membrane that faces the lumen. [GOC:dos]

The luminal side of the lysosomal membrane faces the lumen of the lysosome, a compartment filled with acidic hydrolytic enzymes that are responsible for the degradation of macromolecules. This side of the membrane is characterized by a unique lipid composition compared to other cellular membranes, enriched in phosphoinositides and cholesterol. It also harbors specific transmembrane proteins that play crucial roles in lysosomal function. These proteins include:

- **Lysosomal transmembrane proteins:** These proteins serve as receptors for the delivery of substrates to the lysosome for degradation. They often bind to specific ligands, such as mannose-6-phosphate receptors, which facilitate the transport of newly synthesized lysosomal enzymes from the Golgi apparatus.

- **Proton pumps (V-ATPases):** These pumps actively transport protons into the lysosomal lumen, maintaining its acidic pH, which is essential for the optimal activity of the hydrolytic enzymes.

- **Membrane transporters:** These proteins facilitate the transport of ions, metabolites, and other molecules across the lysosomal membrane, regulating the internal environment of the lysosome and ensuring proper functioning of the degradative processes.

- **Lipid modifying enzymes:** These enzymes contribute to the unique lipid composition of the lysosomal membrane, including the synthesis and degradation of specific phospholipids and cholesterol.

The luminal side of the lysosomal membrane also interacts with the luminal contents, including the degraded products of macromolecules. The membrane itself is resistant to the hydrolytic activity of the lysosomal enzymes, preventing the destruction of the lysosome itself. This stability is crucial for the long-term function of the lysosome and its role in cellular homeostasis.'
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Proteins (2)

ProteinDefinitionTaxonomy
Heat shock cognate 71 kDa proteinA heat shock cognate 71 kDa protein that is encoded in the genome of human. [PRO:DAN]Homo sapiens (human)
Lysosomal protective proteinA lysosomal protective protein that is encoded in the genome of human. [PRO:DNx, UniProtKB:P10619]Homo sapiens (human)

Compounds (16)

CompoundDefinitionClassesRoles
3,4-dichloroisocoumarin3,4-dichloroisocoumarin : A member of the class of isocoumarins that is isocoumarin substituted by chloro groups at positions 3 and 4. It is a serine protease inhibitor.isocoumarins;
organochlorine compound
geroprotector;
serine protease inhibitor
isoflurophateIsoflurophate: A di-isopropyl-fluorophosphate which is an irreversible cholinesterase inhibitor used to investigate the NERVOUS SYSTEM.dialkyl phosphate
adenosine diphosphateAdenosine Diphosphate: Adenosine 5'-(trihydrogen diphosphate). An adenine nucleotide containing two phosphate groups esterified to the sugar moiety at the 5'-position.adenosine 5'-phosphate;
purine ribonucleoside 5'-diphosphate
fundamental metabolite;
human metabolite
tubercidintubercidin : An N-glycosylpyrrolopyrimidine that is adenosine in which the in the 5-membered ring that is not attached to the ribose moiety is replaced by a carbon. Tubercidin is produced in the culture broth of Streptomyces tubericidus.

Tubercidin: An antibiotic purine ribonucleoside that readily substitutes for adenosine in the biological system, but its incorporation into DNA and RNA has an inhibitory effect on the metabolism of these nucleic acids.
antibiotic antifungal agent;
N-glycosylpyrrolopyrimidine;
ribonucleoside
antimetabolite;
antineoplastic agent;
bacterial metabolite
toyocamycintoyocamycin : An N-glycosylpyrrolopyrimidine that is tubercidin in which the hydrogen at position 5 of the pyrrolopyrimidine moiety has been replaced by a cyano group.

Toyocamycin: 4-Amino-5-cyano-7-(D-ribofuranosyl)-7H- pyrrolo(2,3-d)pyrimidine. Antibiotic antimetabolite isolated from Streptomyces toyocaensis cultures. It is an analog of adenosine, blocks RNA synthesis and ribosome function, and is used mainly as a tool in biochemistry.
antibiotic antifungal agent;
N-glycosylpyrrolopyrimidine;
nitrile;
ribonucleoside
antimetabolite;
antineoplastic agent;
apoptosis inducer;
bacterial metabolite
nsc 65346sangivamycin : A nucleoside analogue that is adenosine in which the nitrogen at position 7 is replaced by a carbamoyl-substituted carbon. It is a potent inhibitor of protein kinase C.

sangivamycin: RN given refers to parent cpd
nucleoside analogueprotein kinase inhibitor
adenosinequinquefolan B: isolated from roots of Panax quinquefolium L.; RN not in Chemline 10/87; RN from Toxlitadenosines;
purines D-ribonucleoside
analgesic;
anti-arrhythmia drug;
fundamental metabolite;
human metabolite;
vasodilator agent
8-aminoadenosine
e 64E 64: cysteine protease inhibitor of microbial origin, which inhibits cathepsin B (EC 3.4.22.1) and cathepsin L (EC 3.4.22.-)dicarboxylic acid monoamide;
epoxy monocarboxylic acid;
guanidines;
L-leucine derivative;
zwitterion
antimalarial;
antiparasitic agent;
protease inhibitor
bortezomibamino acid amide;
L-phenylalanine derivative;
pyrazines
antineoplastic agent;
antiprotozoal drug;
protease inhibitor;
proteasome inhibitor
5'-deoxyadenosine5'-deoxyadenosine : A 5'-deoxyribonucleoside compound having adenosine as the nucleobase.

5'-deoxyadenosine: main heading DEOXYADENOSINE refers to the 3' cpd
5'-deoxyribonucleoside;
adenosines
Escherichia coli metabolite;
human metabolite;
mouse metabolite
gs-7340tenofovir alafenamide : An L-alanine derivative that is isopropyl L-alaninate in which one of the amino hydrogens is replaced by an (S)-({[(2R)-1-(6-amino-9H-purin-9-yl)propan-2-yl]oxy}methyl)(phenoxy)phosphoryl group. A prodrug for tenofovir, it is used (as the fumarate salt) in combination therapy for the treatment of HIV-1 infection.

tenofovir alafenamide: component of Biktarvy
6-aminopurines;
ether;
isopropyl ester;
L-alanine derivative;
phosphoramidate ester
antiviral drug;
HIV-1 reverse transcriptase inhibitor;
prodrug
carfilzomibepoxide;
morpholines;
tetrapeptide
antineoplastic agent;
proteasome inhibitor
ver 155008VER 155008: structure in first sourcepurine nucleoside
rpx7009RPX7009: a beta-lactamase inhibitor; structure in first source
nms-e973NMS-E973: structure in first source