Page last updated: 2024-10-24

regulation of PERK-mediated unfolded protein response

Definition

Target type: biologicalprocess

Any process that modulates the frequency, rate or extent of the PERK-mediated unfolded protein response. [GO_REF:0000058, GOC:bf, GOC:PARL, GOC:TermGenie, PMID:22013210]

The PERK-mediated unfolded protein response (UPR) is a critical cellular stress response triggered by the accumulation of unfolded or misfolded proteins in the endoplasmic reticulum (ER). PERK, a transmembrane protein kinase, plays a central role in this pathway. Here is a detailed breakdown of its regulation:

1. **ER Stress Recognition:** When misfolded proteins build up in the ER, they bind to the luminal domain of PERK. This binding event initiates oligomerization of PERK molecules, bringing them closer together.

2. **PERK Activation:** Oligomerization of PERK leads to its autophosphorylation, a process that activates its kinase activity.

3. **eIF2α Phosphorylation:** Activated PERK phosphorylates the alpha subunit of eukaryotic initiation factor 2 (eIF2α). This phosphorylation event inhibits the initiation of protein translation, reducing the load of newly synthesized proteins entering the ER.

4. **ATF4 Induction:** The inhibition of translation by eIF2α phosphorylation, paradoxically, leads to an increased translation of activating transcription factor 4 (ATF4). ATF4 is a transcription factor that promotes the expression of genes involved in the UPR, including chaperones, protein folding enzymes, and genes involved in ER-associated protein degradation (ERAD).

5. **CHOP Expression:** ATF4 activates the transcription of C/EBP homologous protein (CHOP), a pro-apoptotic transcription factor. CHOP can induce apoptosis if the ER stress is severe and cannot be resolved.

6. **ERAD Activation:** The UPR also activates ERAD, a process that targets misfolded proteins for degradation by proteasomes. This helps to reduce the burden of misfolded proteins in the ER.

7. **Feedback Regulation:** The UPR is tightly regulated by a feedback mechanism. Once ER stress is resolved, PERK activity is downregulated, and eIF2α is dephosphorylated, restoring normal protein translation.

In summary, the PERK-mediated UPR is a complex and tightly regulated response to ER stress. It involves a series of events, including PERK activation, eIF2α phosphorylation, ATF4 induction, CHOP expression, and ERAD activation. This pathway aims to alleviate ER stress by reducing the load of misfolded proteins, promoting protein folding, and degrading misfolded proteins. However, if the ER stress is severe and persistent, the UPR can trigger apoptosis, contributing to cell death.'
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Proteins (1)

ProteinDefinitionTaxonomy
Endoplasmic reticulum chaperone BiPAn endoplasmic reticulum chaperone BiP that is encoded in the genome of human. [PRO:DAN]Homo sapiens (human)

Compounds (10)

CompoundDefinitionClassesRoles
dichlorophenDichlorophen: Nontoxic laxative vermicide effective for taenia infestation. It tends to produce colic and nausea. It is also used as a veterinary fungicide, anthelmintic, and antiprotozoan. (From Merck, 11th ed.)bridged diphenyl fungicide;
diarylmethane
hexachlorophenehexachlorophene : An organochlorine compound that is diphenylmethane in which each of the phenyl groups is substituted by chlorines at positions 2, 3, and 5, and by a hydroxy group at position 6. An antiseptic that is effective against Gram-positive organisms, it is used in soaps and creams for the treatment of various skin disorders. It is also used in agriculture as an acaricide and fungicide, but is not approved for such use within the European Union.

Hexachlorophene: A chlorinated bisphenol antiseptic with a bacteriostatic action against Gram-positive organisms, but much less effective against Gram-negative organisms. It is mainly used in soaps and creams and is an ingredient of various preparations used for skin disorders. (From Martindale, The Extra Pharmacopoeia, 30th ed, p797)
bridged diphenyl fungicide;
polyphenol;
trichlorobenzene
acaricide;
antibacterial agent;
antifungal agrochemical;
antiseptic drug
triclosanaromatic ether;
dichlorobenzene;
monochlorobenzenes;
phenols
antibacterial agent;
antimalarial;
drug allergen;
EC 1.3.1.9 [enoyl-[acyl-carrier-protein] reductase (NADH)] inhibitor;
EC 1.5.1.3 (dihydrofolate reductase) inhibitor;
fungicide;
persistent organic pollutant;
xenobiotic
adenosine diphosphateAdenosine Diphosphate: Adenosine 5'-(trihydrogen diphosphate). An adenine nucleotide containing two phosphate groups esterified to the sugar moiety at the 5'-position.adenosine 5'-phosphate;
purine ribonucleoside 5'-diphosphate
fundamental metabolite;
human metabolite
2,2'-methylenebis(ethyl-6-tert-butylphenol)
2,2'-methylenebis(4-methyl-6-tert-butylphenol)diarylmethane
oxyclozanideOxyclozanide: Anthelmintic used in grazing animals for fasciola and cestode infestations.
2,2'-bisphenol f2,2'-bisphenol F: contact allergen; structure given in first sourcediarylmethane
8-aminoadenosine
ver 155008VER 155008: structure in first sourcepurine nucleoside