Page last updated: 2024-10-24

RNA repair

Definition

Target type: biologicalprocess

Any process that results in the repair of damaged RNA. [PMID:11000254, PMID:11070075, UniProtKB-KW:KW-0692]

RNA repair is a critical cellular process that maintains the integrity and functionality of RNA molecules. These molecules play essential roles in gene expression, protein synthesis, and numerous other cellular processes. Damage to RNA can occur due to various factors, including exposure to reactive oxygen species, ultraviolet radiation, and chemical agents.

RNA repair mechanisms involve a series of enzymatic steps aimed at detecting, removing, and replacing damaged nucleotides. The specific repair pathways vary depending on the type of damage and the RNA molecule involved.

One prominent repair pathway is base excision repair (BER), which targets damaged or modified bases. BER involves a series of enzymes, including DNA glycosylases, that recognize and remove damaged bases from RNA. This process is followed by the insertion of a correct nucleotide by a polymerase and the ligation of the newly synthesized strand to the original RNA molecule.

Another significant repair pathway is nucleotide excision repair (NER), which removes bulky DNA lesions, such as pyrimidine dimers formed by ultraviolet radiation. NER involves a complex series of protein interactions, including the recognition of the lesion, excision of the damaged DNA segment, and resynthesis of the excised region.

RNA repair pathways are crucial for maintaining cellular homeostasis and protecting against the detrimental effects of RNA damage. Defects in these pathways can lead to various pathologies, including cancer, neurodegenerative diseases, and premature aging.
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Proteins (1)

ProteinDefinitionTaxonomy
Alpha-ketoglutarate-dependent dioxygenase FTOAn alpha-ketoglutarate-dependent dioxygenase FTO that is encoded in the genome of human. [PRO:DNx, UniProtKB:Q9C0B1]Homo sapiens (human)

Compounds (15)

CompoundDefinitionClassesRoles
citric acid, anhydrouscitric acid : A tricarboxylic acid that is propane-1,2,3-tricarboxylic acid bearing a hydroxy substituent at position 2. It is an important metabolite in the pathway of all aerobic organisms.

Citric Acid: A key intermediate in metabolism. It is an acid compound found in citrus fruits. The salts of citric acid (citrates) can be used as anticoagulants due to their calcium chelating ability.
tricarboxylic acidantimicrobial agent;
chelator;
food acidity regulator;
fundamental metabolite
malic acid2-hydroxydicarboxylic acid : Any dicarboxylic acid carrying a hydroxy group on the carbon atom at position alpha to the carboxy group.

malic acid : A 2-hydroxydicarboxylic acid that is succinic acid in which one of the hydrogens attached to a carbon is replaced by a hydroxy group.
2-hydroxydicarboxylic acid;
C4-dicarboxylic acid
food acidity regulator;
fundamental metabolite
pyruvic acidpyruvic acid : A 2-oxo monocarboxylic acid that is the 2-keto derivative of propionic acid. It is a metabolite obtained during glycolysis.

Pyruvic Acid: An intermediate compound in the metabolism of carbohydrates, proteins, and fats. In thiamine deficiency, its oxidation is retarded and it accumulates in the tissues, especially in nervous structures. (From Stedman, 26th ed)
2-oxo monocarboxylic acidcofactor;
fundamental metabolite
2,4-pyridinedicarboxylic acidlutidinic acid : A pyridinedicarboxylic acid carrying carboxy groups at positions 2 and 4.pyridinedicarboxylic acid
d-glutamateD-alpha-amino acid;
glutamic acid
Escherichia coli metabolite;
mouse metabolite
glutamic acidglutamic acid : An alpha-amino acid that is glutaric acid bearing a single amino substituent at position 2.

Glutamic Acid: A non-essential amino acid naturally occurring in the L-form. Glutamic acid is the most common excitatory neurotransmitter in the CENTRAL NERVOUS SYSTEM.
glutamic acid;
glutamine family amino acid;
L-alpha-amino acid;
proteinogenic amino acid
Escherichia coli metabolite;
ferroptosis inducer;
micronutrient;
mouse metabolite;
neurotransmitter;
nutraceutical
d-lactic acid(R)-lactic acid : An optically active form of lactic acid having (R)-configuration.2-hydroxypropanoic acidEscherichia coli metabolite;
human metabolite
d-2-hydroxyglutarate(R)-2-hydroxyglutaric acid : The (R)-enantiomer of 2-hydroxyglutaric acid.2-hydroxyglutaric acidalgal metabolite
alpha-hydroxyglutarate, (l)-isomer2-hydroxyglutaric acid
fumaric acidfumaric acid : A butenedioic acid in which the C=C double bond has E geometry. It is an intermediate metabolite in the citric acid cycle.

fumaric acid: see also record for ferrous fumarate; use FUMARATES for general fumaric acid esters
butenedioic acidfood acidity regulator;
fundamental metabolite;
geroprotector
5-carboxy-8-hydroxyquinoline5-carboxy-8-hydroxyquinoline: a JmjC histone demethylase inhibitor; structure in first sourcequinolines
aconitic acidcis-aconitic acid : The cis-isomer of aconitic acid.aconitic acidfundamental metabolite
oxalylglycineN-oxalylglycine : An amino dicarboxylic acid that is iminodiacetic acid with an oxo substituent. It is used as an inhibitor of alpha-ketoglutarate dependent (EC 1.14.11.*) enzymes.

oxalylglycine: structure given in first source
amino dicarboxylic acid;
N-acylglycine
EC 1.14.11.* (oxidoreductase acting on paired donors, 2-oxoglutarate as one donor, incorporating 1 atom each of oxygen into both donors) inhibitor
entacaponeentacapone : A monocarboxylic acid amide that is N,N-diethylprop-2-enamide in which the hydrogen at position 2 is substituted by a cyano group and the hydrogen at the 3E position is substituted by a 3,4-dihydroxy-5-nitrophenyl group.

entacapone: structure given in first source
2-nitrophenols;
catechols;
monocarboxylic acid amide;
nitrile
antidyskinesia agent;
antiparkinson drug;
central nervous system drug;
EC 2.1.1.6 (catechol O-methyltransferase) inhibitor
fg-4592roxadustat : An N-acylglycine resulting from the formal condensation of the amino group of glycine with the carboxy group of 4-hydroxy-1-methyl-7-phenoxyisoquinoline-3-carboxylic acid. It is an inhibitor of hypoxia inducible factor prolyl hydroxylase (HIF-PH).

roxadustat: structure in first source
aromatic ether;
isoquinolines;
N-acylglycine
EC 1.14.11.2 (procollagen-proline dioxygenase) inhibitor;
EC 1.14.11.29 (hypoxia-inducible factor-proline dioxygenase) inhibitor