Page last updated: 2024-10-24

peptide cross-linking

Definition

Target type: biologicalprocess

The formation of a covalent cross-link between or within protein chains. [GOC:jsg]

Peptide cross-linking is a chemical process that covalently links two or more peptides together. This process can occur naturally within cells or be induced artificially in the lab. The resulting cross-linked peptides can form stable complexes that are resistant to enzymatic degradation. This makes them valuable tools for studying protein interactions and structures.

The process of peptide cross-linking can be divided into several steps. First, a cross-linking reagent is introduced to the system. This reagent typically contains two reactive groups that can react with amino acid residues on the peptides. The cross-linking reagent can be specific for certain amino acid residues, or it can be more promiscuous and react with a variety of residues.

Once the cross-linking reagent has been introduced, it can react with the peptides to form a cross-linked complex. The resulting cross-linked complex will be stabilized by the covalent bond between the peptides.

There are many different cross-linking reagents available, and each reagent has its own unique properties. Some reagents are more efficient at cross-linking peptides than others. Some reagents are more specific for certain amino acid residues than others. And some reagents are more stable than others.

Peptide cross-linking is a powerful tool that can be used to study protein interactions and structures. It can be used to identify new protein-protein interactions, to map protein-protein interfaces, and to study the dynamics of protein complexes.

In addition to its use in research, peptide cross-linking is also used in the development of new drugs and therapies. For example, cross-linking reagents are used to develop new antibiotics that target bacterial proteins.

The process of peptide cross-linking can be summarized as follows:

1. A cross-linking reagent is introduced to the system.
2. The cross-linking reagent reacts with amino acid residues on the peptides to form a cross-linked complex.
3. The resulting cross-linked complex is stabilized by the covalent bond between the peptides.

Peptide cross-linking is a versatile and powerful tool that has a wide range of applications in biology, chemistry, and medicine.'
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Proteins (3)

ProteinDefinitionTaxonomy
Protein-glutamine gamma-glutamyltransferase 2A protein-glutamine gamma-glutamyltransferase 2 that is encoded in the genome of human. [PRO:DNx, UniProtKB:P21980]Homo sapiens (human)
FibronectinA fibronectin that is encoded in the genome of human. [PRO:DNx, UniProtKB:P02751]Homo sapiens (human)
Coagulation factor XIII A chainA coagulation factor XIII A chain that is encoded in the genome of human. [PRO:DNx, UniProtKB:P00488]Homo sapiens (human)

Compounds (19)

CompoundDefinitionClassesRoles
1-(2-naphthalenyl)-3-[(phenylmethyl)-propan-2-ylamino]-1-propanoneZM39923: structure in first sourcenaphthalenes
beta-lapachonebeta-lapachone : A benzochromenone that is 3,4-dihydro-2H-benzo[h]chromene-5,6-dione substituted by geminal methyl groups at position 2. Isolated from Tabebuia avellanedae, it exhibits antineoplastic and anti-inflammatory activities.

beta-lapachone: antineoplastic inhibitor of reverse transcriptase, DNA topoisomerase, and DNA polymerase
benzochromenone;
orthoquinones
anti-inflammatory agent;
antineoplastic agent;
plant metabolite
vitamin k 3Vitamin K 3: A synthetic naphthoquinone without the isoprenoid side chain and biological activity, but can be converted to active vitamin K2, menaquinone, after alkylation in vivo.1,4-naphthoquinones;
vitamin K
angiogenesis inhibitor;
antineoplastic agent;
EC 3.4.22.69 (SARS coronavirus main proteinase) inhibitor;
human urinary metabolite;
nutraceutical
5-bromoisatinindolesanticoronaviral agent
isatintribulin: endogenous MONOAMINE OXIDASE inhibitory activity extractable into ethyl acetate found in brain and many mammalian tissues and fluids; ISATIN is a major component; produced in excess following alcohol withdrawal;indoledioneEC 1.4.3.4 (monoamine oxidase) inhibitor;
plant metabolite
indirubin
5-Chloro-1H-indole-2,3-dioneindolesanticoronaviral agent
5-iodoisatin5-iodoisatin: structure in first sourceindolesanticoronaviral agent
isoindigotinisoindigotin: used in treatment of chronic granulocytic leukemia; structure given in first source
n-phenylacrylamideN-phenylacrylamide: structure in first source
nsc 953971,4-naphthoquinones
s 1033(trifluoromethyl)benzenes;
imidazoles;
pyridines;
pyrimidines;
secondary amino compound;
secondary carboxamide
anticoronaviral agent;
antineoplastic agent;
tyrosine kinase inhibitor
ag-213tyrphostin 47: inhibits protein-tyrosine kinase activity of EGF-R both in vitro and in living cells;
urb 597cyclohexyl carbamic acid 3'-carbamoylbiphenyl-3-yl ester: a fatty acid amide hydrolase inhibitor; structure in first sourcebiphenyls
rottlerinrottlerin : A chromenol that is 2,2-dimethyl-2H-chromene substituted by hydroxy groups at positions 5 and 7, a 3-acetyl-2,4,6-trihydroxy-5-methylbenzyl group at position 6 and a (1E)-3-oxo-1-phenylprop-1-en-3-yl group at position 8. A potassium channel opener, it is isolated from Mallotus philippensis.

rottlerin: an angiogenesis inhibitor; an inhibitor of protein kinase Cdelta (PKCdelta) and calmodulin kinase III; RN refers to (E)-isomer; do not confuse this chalcone with an anthraquinone that is also called rottlerin (RN 481-72-1);
aromatic ketone;
benzenetriol;
chromenol;
enone;
methyl ketone
anti-allergic agent;
antihypertensive agent;
antineoplastic agent;
apoptosis inducer;
K-ATP channel agonist;
metabolite
gw-5074
cay 10499carbamate ester
glutaminase
guanylyl imidodiphosphateguanosine 5'-[beta,gamma-imido]triphosphate : A nucleoside triphosphate analogue that is GTP in which the oxygen atom bridging the beta- to the gamma- phosphate is replaced by a nitrogen atom A non-hydrolyzable analog of GTP, it binds tightly to G-protein in the presence of Mg(2+).

Guanylyl Imidodiphosphate: A non-hydrolyzable analog of GTP, in which the oxygen atom bridging the beta to the gamma phosphate is replaced by a nitrogen atom. It binds tightly to G-protein in the presence of Mg2+. The nucleotide is a potent stimulator of ADENYLYL CYCLASES.
nucleoside triphosphate analogue