Page last updated: 2024-10-24

RNA processing

Definition

Target type: biologicalprocess

Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules. [GOC:mah]

RNA processing is a fundamental biological process that transforms precursor messenger RNA (pre-mRNA) transcripts into mature messenger RNA (mRNA) molecules. These mRNA molecules then serve as templates for protein synthesis. This intricate process involves a series of coordinated steps, including capping, splicing, and polyadenylation.

Capping: A 5' cap, consisting of a 7-methylguanosine (m7G) residue, is added to the 5' end of the pre-mRNA molecule. This cap is essential for the recognition and binding of the mRNA by the ribosome during translation. The cap also protects the mRNA from degradation by exonucleases.

Splicing: Introns, non-coding sequences within the pre-mRNA, are removed through a process called splicing. Splicing is catalyzed by a complex molecular machinery called the spliceosome, which is composed of proteins and small nuclear RNAs (snRNAs). The spliceosome recognizes specific sequences at the 5' and 3' ends of introns and precisely excises them, joining the flanking exons together. Alternative splicing allows for the generation of multiple protein isoforms from a single gene, increasing the diversity of the proteome.

Polyadenylation: A poly(A) tail, consisting of a string of adenine nucleotides, is added to the 3' end of the pre-mRNA. The poly(A) tail plays a crucial role in the stability, transport, and translation of the mRNA molecule. It protects the mRNA from degradation by exonucleases and helps in the recognition and binding of the mRNA by the ribosome.

These RNA processing events are highly regulated and are essential for the production of functional proteins. Errors in RNA processing can lead to a variety of diseases, including genetic disorders, cancer, and neurodegenerative diseases.'
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Proteins (2)

ProteinDefinitionTaxonomy
Ribonuclease TA ribonuclease T that is encoded in the genome of Escherichia coli K-12. [PRO:DNx, UniProtKB:P30014]Escherichia coli K-12
2-5A-dependent ribonucleaseA 2-5A-dependent ribonuclease that is encoded in the genome of human. [PRO:DNx, UniProtKB:Q05823]Homo sapiens (human)

Compounds (8)

CompoundDefinitionClassesRoles
citric acid, anhydrouscitric acid : A tricarboxylic acid that is propane-1,2,3-tricarboxylic acid bearing a hydroxy substituent at position 2. It is an important metabolite in the pathway of all aerobic organisms.

Citric Acid: A key intermediate in metabolism. It is an acid compound found in citrus fruits. The salts of citric acid (citrates) can be used as anticoagulants due to their calcium chelating ability.
tricarboxylic acidantimicrobial agent;
chelator;
food acidity regulator;
fundamental metabolite
aurintricarboxylic acidaurintricarboxylic acid : A member of the class of quinomethanes that is 3-methylidene-6-oxocyclohexa-1,4-diene-1-carboxylic acid in which the methylidene hydrogens are replaced by 4-carboxy-3-hydroxyphenyl groups. The trisodium salt is the biological stain 'chrome violet CG' while the triammonium salt is 'aluminon'.

Aurintricarboxylic Acid: A dye which inhibits protein biosynthesis at the initial stages. The ammonium salt (aluminon) is a reagent for the colorimetric estimation of aluminum in water, foods, and tissues.
monohydroxybenzoic acid;
quinomethanes;
tricarboxylic acid
fluorochrome;
histological dye;
insulin-like growth factor receptor 1 antagonist
dithionitrobenzoic aciddithionitrobenzoic acid : An organic disulfide that results from the formal oxidative dimerisation of 2-nitro-5-thiobenzoic acid. An indicator used to quantify the number or concentration of thiol groups.

Dithionitrobenzoic Acid: A standard reagent for the determination of reactive sulfhydryl groups by absorbance measurements. It is used primarily for the determination of sulfhydryl and disulfide groups in proteins. The color produced is due to the formation of a thio anion, 3-carboxyl-4-nitrothiophenolate.
nitrobenzoic acid;
organic disulfide
indicator
butylparabenorganic molecular entity
7-nitro-1h-indole-2-carboxylic acid7-nitro-1H-indole-2-carboxylic acid: acts on AP endonuclease, 3'-phosphodiesterase, and 3'-phosphatase activities of APE1; structure in first source
vitexinC-glycosyl compound;
trihydroxyflavone
antineoplastic agent;
EC 3.2.1.20 (alpha-glucosidase) inhibitor;
plant metabolite;
platelet aggregation inhibitor
hyperosidequercetin 3-O-beta-D-galactopyranoside : A quercetin O-glycoside that is quercetin with a beta-D-galactosyl residue attached at position 3. Isolated from Artemisia capillaris, it exhibits hepatoprotective activity.beta-D-galactoside;
monosaccharide derivative;
quercetin O-glycoside;
tetrahydroxyflavone
hepatoprotective agent;
plant metabolite
myricetin7-hydroxyflavonol;
hexahydroxyflavone
antineoplastic agent;
antioxidant;
cyclooxygenase 1 inhibitor;
food component;
geroprotector;
hypoglycemic agent;
plant metabolite