Page last updated: 2024-10-24

negative regulation of ceramide biosynthetic process

Definition

Target type: biologicalprocess

Any process that stops, prevents or reduces the frequency, rate or extent of a ceramide biosynthetic process. [GOC:TermGenie, PMID:15302821]

Negative regulation of ceramide biosynthetic process is a critical cellular mechanism that controls the levels of ceramide, a bioactive sphingolipid with diverse roles in cell signaling, apoptosis, and stress responses. Ceramide biosynthesis is a complex multi-step process that involves the condensation of palmitoyl-CoA and serine to form 3-ketodihydrosphingosine, which is subsequently reduced to dihydrosphingosine. Dihydrosphingosine is then acylated to form dihydroceramide, which is finally desaturated to ceramide. The negative regulation of this pathway can occur at various steps, including the inhibition of key enzymes, the reduction of substrate availability, and the activation of feedback mechanisms.

**Enzymatic Inhibition:**
- **Serine palmitoyltransferase (SPT):** SPT is the rate-limiting enzyme in ceramide biosynthesis, catalyzing the initial condensation reaction. Several mechanisms can inhibit SPT activity, including:
- **Feedback inhibition by ceramide:** Ceramide itself can act as a negative feedback regulator, directly inhibiting SPT activity.
- **Protein phosphorylation:** SPT can be phosphorylated by kinases, leading to its inactivation.
- **Protein degradation:** SPT can be degraded by proteases, reducing its levels and activity.

**Substrate Availability:**
- **Palmitoyl-CoA:** The availability of palmitoyl-CoA, a crucial substrate for SPT, can be regulated through various mechanisms, including:
- **Fatty acid uptake:** The cellular uptake of fatty acids can be modulated, influencing the availability of palmitoyl-CoA.
- **Fatty acid synthesis:** The de novo synthesis of fatty acids can be controlled, affecting the supply of palmitoyl-CoA.

**Feedback Mechanisms:**
- **Ceramide-activated protein phosphatases (CAPPs):** CAPPs are activated by ceramide and can dephosphorylate and inactivate key signaling molecules involved in ceramide biosynthesis.
- **Sphingosine kinases (SPKs):** SPKs convert sphingosine, a precursor of ceramide, to sphingosine-1-phosphate (S1P), a potent anti-apoptotic and pro-growth signaling molecule. S1P can act as a negative regulator of ceramide synthesis by promoting the degradation of ceramide.

**Other Regulatory Mechanisms:**
- **MicroRNAs (miRNAs):** miRNAs can target the mRNA transcripts of enzymes involved in ceramide biosynthesis, reducing their translation and expression.
- **Transcriptional regulation:** The expression of genes encoding enzymes involved in ceramide biosynthesis can be regulated by transcription factors and signaling pathways.

Overall, the negative regulation of ceramide biosynthesis is a complex and tightly controlled process that ensures the proper balance of ceramide levels in cells. This regulation is crucial for maintaining cellular homeostasis and preventing the accumulation of ceramide, which can lead to various pathological conditions.'
"

Proteins (1)

ProteinDefinitionTaxonomy
Sphingosine kinase 1A sphingosine kinase 1 that is encoded in the genome of human. [PRO:DNx, UniProtKB:Q9NYA1]Homo sapiens (human)

Compounds (10)

CompoundDefinitionClassesRoles
fingolimod hydrochloridefingolimod hydrochloride : The hydrochloride salt of 2-amino-2-[2-(4-octylphenyl) ethyl]-1,3-propanediol (fingolimod).

Fingolimod Hydrochloride: A sphingosine-derivative and IMMUNOSUPPRESSIVE AGENT that blocks the migration and homing of LYMPHOCYTES to the CENTRAL NERVOUS SYSTEM through its action on SPHINGOSINE 1-PHOSPHATE RECEPTORS. It is used in the treatment of MULTIPLE SCLEROSIS.
hydrochlorideimmunosuppressive agent;
prodrug;
sphingosine-1-phosphate receptor agonist
4-(4-(4-chloro-phenyl)thiazol-2-ylamino)phenolsubstituted aniline
safingolsafingol: RN given refers to the (R-(R*,S*))-isomeramino alcohol
sphingosine2-aminooctadec-4-ene-1,3-diol : A 2-aminooctadecene-1,3-diol having its double bond at position 4.

sphing-4-enine : A sphingenine in which the C=C double bond is located at the 4-position.

sphingenine : A 2-aminooctadecene-1,3-diol having (2S,3R)-configuration.

sphingoid : Sphinganine, its homologs and stereoisomers, and the hydroxy and unsaturated derivatives of these compounds.
sphing-4-eninehuman metabolite;
mouse metabolite
n,n-dimethylsphingenineN,N-dimethylsphingosine : A sphingoid that is sphingosine in which the two amino hydrogens are replaced by methyl groups.

N,N-dimethylsphingosine: a sphingosine kinase inhibitor
aminodiol;
sphingoid;
tertiary amino compound
EC 2.7.1.91 (sphingosine kinase) inhibitor;
metabolite
es-2851-deoxysphinganine : A bioactive sphingoid, sphinganine, in which the terminal hydroxy group has been replaced by a hydrogen.

spisulosine: from marine organism, Spisula polynyma; structure in first source
amino alcohol;
sphingoid
antineoplastic agent
3-(4-chlorophenyl)-adamantane-1-carboxylic acid (pyridin-4-ylmethyl)amideorganochlorine compound
bml 258
pf-543PF-543: Sphingosine Kinase 1 Selective Inhibitor; structure in first sourcesulfonamide
rome(2R)-2-amino-2-(methoxymethyl)-4-(4-octylphenyl)butan-1-ol : A 2-amino-2-(methoxymethyl)-4-(4-octylphenyl)butan-1-ol that has R-configuration. It is a sphingosine kinase-2 inhibitor.

Rome: The capital city of Italy.
2-amino-2-(methoxymethyl)-4-(4-octylphenyl)butan-1-olEC 2.7.1.91 (sphingosine kinase) inhibitor