Page last updated: 2024-10-24

glyceraldehyde-3-phosphate biosynthetic process

Definition

Target type: biologicalprocess

The chemical reactions and pathways resulting in the formation of glyceraldehyde-3-phosphate, an important intermediate in glycolysis. [GOC:ai]

Glyceraldehyde-3-phosphate (G3P) biosynthesis is a crucial step in carbohydrate metabolism, particularly in glycolysis and gluconeogenesis. It involves the conversion of dihydroxyacetone phosphate (DHAP) to G3P, a key intermediate in both pathways. This interconversion is catalyzed by the enzyme triosephosphate isomerase (TIM).

**Detailed Process:**

1. **Starting Material:** The process begins with DHAP, a three-carbon sugar phosphate.
2. **Enzyme Action:** TIM, a highly efficient enzyme, facilitates the reversible isomerization of DHAP to G3P. The mechanism involves a series of steps:
- **Proton Abstraction:** TIM abstracts a proton from the hydroxyl group at the C2 position of DHAP, forming an enolate intermediate.
- **Proton Transfer:** The enolate intermediate then donates a proton to the C1 position of DHAP, resulting in the formation of G3P.
3. **Equilibrium:** The reaction is readily reversible, with the equilibrium favoring G3P formation. However, the continuous removal of G3P in downstream metabolic processes drives the reaction towards G3P production.

**Significance:**

- **Glycolysis:** G3P is a key substrate for the subsequent steps of glycolysis, leading to ATP production.
- **Gluconeogenesis:** G3P serves as a precursor for the synthesis of glucose from non-carbohydrate sources.
- **Biosynthesis:** G3P is a precursor for the biosynthesis of various essential molecules, including glycerol, fatty acids, and amino acids.

**Regulation:**

The activity of TIM is regulated by factors such as pH, temperature, and substrate availability.

**Overall, G3P biosynthesis is a vital metabolic process that plays a crucial role in energy production, glucose homeostasis, and the biosynthesis of essential molecules.**'
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Proteins (2)

ProteinDefinitionTaxonomy
Triosephosphate isomeraseA triosephosphate isomerase that is encoded in the genome of human. [PRO:DNx, UniProtKB:P60174]Homo sapiens (human)
TransketolaseA transketolase that is encoded in the genome of human. [PRO:DNx, UniProtKB:P29401]Homo sapiens (human)

Compounds (4)

CompoundDefinitionClassesRoles
thiaminethiamine(1+) : A primary alcohol that is 1,3-thiazol-3-ium substituted by (4-amino-2-methylpyrimidin-5-yl)methyl, methyl and 2-hydroxyethyl groups at positions 3, 4 and 5, respectively.primary alcohol;
vitamin B1
Escherichia coli metabolite;
human metabolite;
mouse metabolite;
Saccharomyces cerevisiae metabolite
phosphoglycolohydroxamatephosphoglycolohydroxamate: inhibits DHAP (dihydroxyacetone phosphate)-converting enzymes; structure

phosphoglycolohydroxamic acid : The hydroxamate of phosphoglycolic acid.
amidoalkyl phosphate;
hydroxamic acid
EC 5.3.1.1 (triose-phosphate isomerase) inhibitor
thiamine thiazolone pyrophosphatethiamine thiazolone pyrophosphate: structure
methyl brevifolincarboxylatemethyl brevifolincarboxylate : An organic heterotricyclic compound that is 1,2,3,5-tetrahydrocyclopenta[c]isochromene substituted by hydroxy groups at positions 7, 8 and 9, oxo groups at positions 3 and 5 and a methoxycarbonyl group at position 1. Isolated from Phyllanthus urinaria and Phyllanthus niruri, it exhibits vasorelaxant activity.

methyl brevifolincarboxylate: isolated from Phyllanthus urinaria; structure in first source
cyclic ketone;
delta-lactone;
organic heterotricyclic compound;
phenols
EC 5.99.1.2 (DNA topoisomerase) inhibitor;
EC 5.99.1.3 [DNA topoisomerase (ATP-hydrolysing)] inhibitor;
metabolite;
platelet aggregation inhibitor;
radical scavenger;
vasodilator agent