Page last updated: 2024-10-24

small molecule metabolic process

Definition

Target type: biologicalprocess

The chemical reactions and pathways involving small molecules, any low molecular weight, monomeric, non-encoded molecule. [GOC:curators, GOC:pde, GOC:vw]

Small molecule metabolic processes encompass the intricate biochemical reactions that cells utilize to transform, utilize, and synthesize a vast array of small molecules. These processes are essential for life, underpinning diverse cellular functions, including energy production, biosynthesis, detoxification, and signaling. Small molecules involved in these processes range from simple sugars and amino acids to complex lipids and nucleotides. The central hub of small molecule metabolism is the network of interconnected metabolic pathways. Each pathway represents a series of enzymatic reactions that convert a specific substrate into a product, often with the assistance of cofactors and enzymes. These pathways can be linear, branched, or cyclical, showcasing the intricate interconnectedness of cellular metabolism. Key aspects of small molecule metabolic processes include:

1. **Anabolism:** This refers to the synthesis of complex molecules from simpler ones, requiring energy input. Examples include protein synthesis, nucleic acid synthesis, and the formation of fatty acids.

2. **Catabolism:** This encompasses the breakdown of complex molecules into simpler ones, releasing energy. Notable examples include glycolysis, the breakdown of glucose for energy, and the citric acid cycle, a central energy-yielding pathway.

3. **Interconversion:** Cells can interconvert different types of small molecules, allowing for flexibility and adaptation. For instance, glucose can be converted into glycogen for storage or into pyruvate, a key metabolite in energy production.

4. **Regulation:** Metabolic processes are tightly regulated to ensure optimal cellular function and maintain homeostasis. This regulation involves complex feedback mechanisms, enzyme kinetics, and hormonal signals.

5. **Environmental Responses:** Cells adjust their metabolic activity in response to environmental changes, including nutrient availability, temperature fluctuations, and stress conditions.

Small molecule metabolic processes are constantly evolving, shaped by the interplay of genetic factors, environmental cues, and cellular demands. Their intricate complexity highlights the remarkable adaptability and resilience of living organisms.'
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Proteins (3)

ProteinDefinitionTaxonomy
3-oxoacyl-[acyl-carrier-protein] synthase 1A 3-oxoacyl-[acyl-carrier-protein] synthase 1 that is encoded in the genome of Escherichia coli K-12. [PRO:DNx, UniProtKB:P0A953]Escherichia coli K-12
3-oxoacyl-[acyl-carrier-protein] synthase 3A beta-ketoacyl-[acyl-carrier-protein] synthase III that is encoded in the genome of Escherichia coli K-12. [PRO:DNx, UniProtKB:P0A6R0]Escherichia coli K-12
4-hydroxy-tetrahydrodipicolinate synthaseA 4-hydroxy-tetrahydrodipicolinate synthase that is encoded in the genome of Escherichia coli K-12. [PRO:DNx, UniProtKB:P0A6L2]Escherichia coli K-12

Compounds (6)

CompoundDefinitionClassesRoles
alpha-ketobutyric acid2-oxobutanoic acid : A 2-oxo monocarboxylic acid that is the 2-oxo derivative of butanoic acid.

alpha-ketobutyric acid: RN given refers to parent cpd; structure
2-oxo monocarboxylic acid;
short-chain fatty acid
glyoxylic acidglyoxylic acid : A 2-oxo monocarboxylic acid that is acetic acid bearing an oxo group at the alpha carbon atom.

glyoxylic acid: RN given refers to parent cpd
2-oxo monocarboxylic acid;
aldehydic acid
Escherichia coli metabolite;
human metabolite;
mouse metabolite;
Saccharomyces cerevisiae metabolite
kanamycin akanamycin : Kanamycin is a naturally occurring antibiotic complex from Streptomyces kanamyceticus that consists of several components: kanamycin A, the major component (also usually designated as kanamycin), and kanamycins B, C, D and X the minor components.

Kanamycin: Antibiotic complex produced by Streptomyces kanamyceticus from Japanese soil. Comprises 3 components: kanamycin A, the major component, and kanamycins B and C, the minor components.
kanamycinsbacterial metabolite
3-fluoropyruvate3-fluoropyruvate : The anion of 3-fluoropyruvic acid.

3-fluoropyruvate: a substrate for E coli pyruvate dehydrogenase; structure; RN given refers to parent cpd

3-fluoropyruvic acid : A pyruvic acid derivative having a 3-fluoro substituent.
2-oxo monocarboxylic acid;
organofluorine compound
2-ketopentanoic acid2-ketopentanoic acid: RN given refers to parent cpd

2-oxopentanoic acid : An oxopentanoic acid carrying an oxo group at position 2.
2-oxo monocarboxylic acid;
oxopentanoic acid
human metabolite
thiolactomycinthiolactomycin: from actinomycetes; structure given in first source