Target type: biologicalprocess
The chemical reactions and pathways resulting in the formation of amyloid precursor protein (APP), the precursor of amyloid-beta, a glycoprotein associated with Alzheimer's disease. [GOC:go_curators]
The amyloid precursor protein (APP) biosynthetic process is a complex and tightly regulated pathway that involves the production, processing, and eventual degradation of APP, a transmembrane protein found in neurons and other cells. Here's a detailed description:
1. **Transcription and Translation:** The process begins with the transcription of the APP gene, located on chromosome 21, into messenger RNA (mRNA). The mRNA then travels to ribosomes in the endoplasmic reticulum (ER) where it is translated into the APP polypeptide chain.
2. **ER Translocation and Glycosylation:** The newly synthesized APP polypeptide chain enters the ER lumen, where it undergoes a series of modifications. These include:
* **N-linked glycosylation:** Sugars are added to specific asparagine residues within the APP molecule.
* **Folding and Chaperone Interactions:** The polypeptide chain folds into its correct three-dimensional structure with the help of chaperone proteins.
3. **Golgi Apparatus Processing:** After folding, APP translocates from the ER to the Golgi apparatus, where it undergoes further modifications:
* **Additional Glycosylation:** Further N-linked glycosylation occurs, and O-linked glycosylation can also take place.
* **Proteolytic Cleavage:** The APP molecule can be cleaved by different enzymes, including alpha-secretase and beta-secretase.
* **Alpha-secretase cleavage:** Occurs within the Abeta domain, preventing the formation of amyloid beta peptides. This results in the production of soluble APP alpha (sAPPalpha), which is thought to have neuroprotective effects.
* **Beta-secretase cleavage:** Occurs at the N-terminus of the Abeta domain, releasing soluble APP beta (sAPPbeta) and generating a C-terminal fragment (CTFbeta).
4. **Gamma-Secretase Cleavage and Abeta Formation:** CTFbeta can be further cleaved by gamma-secretase, a multi-protein complex, resulting in the production of amyloid beta (Abeta) peptides of different lengths, including the toxic Abeta40 and Abeta42.
5. **Abeta Aggregation and Deposition:** Abeta peptides can aggregate into oligomers and fibrils, which are thought to play a role in the development of Alzheimer's disease.
6. **Degradation:** APP and its fragments can be degraded by various pathways, including lysosomal degradation.
7. **Regulation and Control:** The APP biosynthetic process is tightly regulated by various factors, including:
* **Transcriptional control:** Expression of the APP gene can be influenced by factors such as neuronal activity and aging.
* **Post-translational modifications:** Modifications like phosphorylation and glycosylation can regulate APP trafficking and processing.
* **Protease activity:** The activity of alpha-, beta-, and gamma-secretases can be influenced by various factors, including cellular signaling pathways.
The amyloid precursor protein biosynthetic process is essential for normal neuronal function, but its dysregulation can contribute to the development of Alzheimer's disease. Understanding the intricate details of this process is crucial for developing therapies that can modulate APP processing and reduce the formation of toxic Abeta peptides.'
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Protein | Definition | Taxonomy |
---|---|---|
Nicastrin | A nicastrin that is encoded in the genome of human. [PRO:DNx, UniProtKB:Q92542] | Homo sapiens (human) |
Compound | Definition | Classes | Roles |
---|---|---|---|
7-amino-4-chloro-3-methoxy-2-benzopyran-1-one | isocoumarins | ||
tarenflurbil | tarenflurbil: R-enantiomer of flurbiprofen but not a COX inhibitor; modulates NF-kB, gamma-secretase, amyloid beta-protein; | flurbiprofen | |
cholanic acid | 5beta-cholanic acids; cholanic acid | ||
t0901317 | T0901317: an LXRalpha and LXRbeta agonist | ||
n-(n-(3,5-difluorophenacetyl)alanyl)phenylglycine tert-butyl ester | DAPT : A dipeptide consisting of alanylphenylglycine derivatised as a 3,5-difluorophenylacetamide at the amino terminal and a tert-butyl ester at the carboxy terminal. A gamma-secretase inhibitor. | carboxylic ester; difluorobenzene; dipeptide; tert-butyl ester | EC 3.4.23.46 (memapsin 2) inhibitor |
sulindac sulfide | sulindac sulfide : An aryl sulfide that is a metabolite of sulindac. A non-steroidal anti-inflammatory drug, which also has anticancer activity. sulindac sulfide: sulfated analog of indomethacin & inhibitor of prostaglandin synthesis in vitro; RN given refers to cpd without isomeric designation; structure given in first source | aryl sulfide; monocarboxylic acid; organofluorine compound | antineoplastic agent; apoptosis inducer; non-steroidal anti-inflammatory drug |
l 685458 | L 685458: a gamma-secretase inhibitor; structure in first source L-685,458 : A peptide and carboxamide that is L-leucyl-L-phenylalaninamide, L-Leu-L-Phe-NH2, which has been acylated on the N-terminus by a Phe-Phe hydroxyethylene dipeptide isotere, 2R-benzyl-5S-tert-butoxycarbonylamino-4R-hydroxy-6-phenylhexanoic acid. Compounds based on the structure of L-685,458 are potent inhibitors of gamma-secretase, which mediates the final catalytic step that generates the amyloid beta-peptide (Abeta), which assembles into the neurotoxic aggregates in the brains of sufferers of Alzheimer's disease. | carbamate ester; monocarboxylic acid amide; peptide; secondary alcohol | EC 3.4.23.46 (memapsin 2) inhibitor; peptidomimetic |
mk 0752 | |||
ly 450139 | peptide | ||
chf 5074 | 1-(3',4'-dichloro-2-fluoro(1,1'-biphenyl)-4-yl)cyclopropanecarboxylic acid: a beta-amyloid(1-42) lowering agent; structure in first source | ||
ly 411575 | dibenzoazepine; difluorobenzene; lactam; secondary alcohol | EC 3.4.23.46 (memapsin 2) inhibitor | |
4-(2-((1r)-1-(((4-chlorophenyl)sulfonyl)-2,5-difluoroanilino)ethyl)-5-fluorophenyl)butanoic acid | sulfonamide | ||
begacestat | |||
e 2012 | |||
mrk 560 | MRK 560: a gamma-secretase inhibitor; MRK-560 is the (cis)-isomer; structure in first source | ||
1, 3-di-(n-carboxybenzoyl-leucyl-leucyl)amino acetone | 1, 3-di-(N-carboxybenzoyl-leucyl-leucyl)amino acetone: structure in first source | ||
pf 3084014 | nirogacestat : A member of the class of imidazoles that is 1H-imidazole substituted by a 1-[(2,2-dimethylpropyl)amino]-2-methylpropan-2-yl group at position 1 and a {N-[(2S)-6,8-difluoro-1,2,3,4-tetrahydronaphthalen-2-yl]-L-norvalyl}amino group at position 4. It is a gamma-secretase inhibitor whose hydrobromide salt is indicated for adult patients with progressing desmoid tumours who require systemic treatment. nirogacestat: an antineoplastic agent | ||
bms 708163 | BMS 708163: structure in first source | oxadiazole; ring assembly | |
ro 4929097 | dibenzoazepine; dicarboxylic acid diamide; lactam; organofluorine compound | EC 3.4.23.46 (memapsin 2) inhibitor | |
jnj 40418677 | |||
(r)-4-cyclopropyl-7,8-difluoro-5-(4-(trifluoromethyl)phenylsulfonyl)-4,5-dihydro-1h-pyrazolo(4,3-c)quinoline | (R)-4-cyclopropyl-7,8-difluoro-5-(4-(trifluoromethyl)phenylsulfonyl)-4,5-dihydro-1H-pyrazolo(4,3-c)quinoline: gamma secretase inhibitor; structure in first source |