Target type: molecularfunction
Binding to a mitochondrial large ribosomal subunit. [PMID:28892042]
Mitochondrial large ribosomal subunit binding is a crucial process in the synthesis of proteins within mitochondria, the powerhouses of eukaryotic cells. Mitochondria possess their own ribosomes, distinct from those found in the cytoplasm, responsible for translating mitochondrial DNA into proteins essential for mitochondrial function. The large ribosomal subunit, a major component of the mitochondrial ribosome, plays a central role in the decoding of messenger RNA (mRNA) and the formation of peptide bonds, the fundamental building blocks of proteins. Mitochondrial large ribosomal subunit binding involves the interaction of proteins and other macromolecules with the large subunit, enabling it to bind to mRNA and tRNA molecules. This binding process is essential for positioning the mRNA and tRNA in the correct reading frame, ensuring accurate translation of the genetic code. Furthermore, it facilitates the assembly of the ribosome, allowing it to recruit and position various factors required for protein synthesis, including elongation factors and release factors. The precise molecular mechanism of mitochondrial large ribosomal subunit binding involves a complex interplay of protein-protein interactions, RNA-protein interactions, and conformational changes within the ribosome. Specific proteins, known as ribosomal proteins, bind to the large subunit and contribute to its structural integrity and function. These proteins often interact with ribosomal RNA (rRNA), a major component of the ribosome, to create binding sites for mRNA and tRNA. The interaction of the large subunit with mRNA is mediated by the decoding center, a highly conserved region within the subunit responsible for recognizing the codon on the mRNA and matching it with the anticodon on the tRNA. This process ensures that the correct amino acid is incorporated into the growing polypeptide chain. In summary, mitochondrial large ribosomal subunit binding is an intricate process that underpins the translation of mitochondrial DNA into essential proteins. It involves the coordinated binding of proteins and RNA molecules, enabling the ribosome to accurately decode mRNA, assemble the polypeptide chain, and ultimately generate functional mitochondrial proteins.'
"
Protein | Definition | Taxonomy |
---|---|---|
Acyl carrier protein, mitochondrial | An acyl carrier protein, mitochondrial that is encoded in the genome of cow. [OMA:P52505, PRO:DNx] | Bos taurus (cattle) |
Acyl carrier protein, mitochondrial | An acyl carrier protein, mitochondrial that is encoded in the genome of human. [PRO:DNx, UniProtKB:O14561] | Homo sapiens (human) |
Compound | Definition | Classes | Roles |
---|---|---|---|
rotenone | Derris: A plant genus of the family FABACEAE. The root is a source of rotenoids (ROTENONE) and flavonoids. Some species of Pongamia have been reclassified to this genus and some to MILLETTIA. Some species of Deguelia have been reclassified to this genus. rotenoid : Members of the class of tetrahydrochromenochromene that consists of a cis-fused tetrahydrochromeno[3,4-b]chromene skeleton and its substituted derivatives. The term was originally restricted to natural products, but is now also used to describe semi-synthetic and fully synthetic compounds. | organic heteropentacyclic compound; rotenones | antineoplastic agent; metabolite; mitochondrial NADH:ubiquinone reductase inhibitor; phytogenic insecticide; piscicide; toxin |
desacetyluvaricin | desacetyluvaricin: isolated from Uvaria accuminata; structure given in first source | ||
squamocin | squamocin: from seeds of Annona squamosa; a trihydroxy-bis-tetrahydrofuran fatty acid lactone; inhibits E. coli NADH:quinone oxidoreductase (NDH-1); structure given in first source | polyketide | |
aurapten | aurapten: RN refers to (E)-isomer; structure given in first source auraptene : A member of the class of coumarins that is umbelliferone in which the phenolic hydrogen has been replaced by a geranyl group. Ii is isolated from several edible fruits and vegetables and exhibits a variety of therapeutic properties. | coumarins; monoterpenoid | antihypertensive agent; antineoplastic agent; antioxidant; apoptosis inducer; dopaminergic agent; EC 2.7.11.24 (mitogen-activated protein kinase) inhibitor; gamma-secretase modulator; gastrointestinal drug; hepatoprotective agent; matrix metalloproteinase inhibitor; neuroprotective agent; plant metabolite; PPARalpha agonist; vulnerary |
piericidin a | piericidin A : A member of the class of monohydroxypyridines that acts as an irreversible mitochondrial Complex I inhibitor that strongly associates with ubiquinone binding sites in both mitochondrial and bacterial forms of NADH:ubiquinone oxidoreductase piericidin A: pyridine-substituted fatty alcohol antibiotic; minor descriptor (75-85); on-line & Index Medicus search ANTIBIOTICS (75-85); RN given refers to (S-(R*,R*-(all-E)))-isomer | aromatic ether; methylpyridines; monohydroxypyridine; secondary allylic alcohol | antimicrobial agent; bacterial metabolite; EC 1.6.5.3 [NADH:ubiquinone reductase (H(+)-translocating)] inhibitor; mitochondrial respiratory-chain inhibitor |
marmin | marmin: structure in first source; RN given for (R-(E))-isomer | ||
laherradurin | laherradurin: structure in first source |