Page last updated: 2024-10-24

lysosomal lumen acidification

Definition

Target type: biologicalprocess

Any process that reduces the pH of the lysosomal lumen, measured by the concentration of the hydrogen ion. [GOC:jid]

Lysosomal lumen acidification is a critical process for the proper function of lysosomes, which are cellular organelles responsible for degrading and recycling cellular components. The process involves the generation and maintenance of a low pH (around 4.5-5.0) within the lysosomal lumen, which is significantly lower than the neutral pH of the cytosol. This acidic environment is essential for several reasons:

1. **Enzyme Activity:** Many lysosomal hydrolases, enzymes that break down macromolecules, are optimally active at acidic pH. These include proteases, nucleases, lipases, and glycosidases. The acidic environment allows these enzymes to function efficiently, breaking down substrates like proteins, nucleic acids, lipids, and carbohydrates.

2. **Substrate Degradation:** The acidic pH of the lysosome denatures and unfolds protein substrates, making them more accessible to the hydrolytic enzymes. This is important for efficient and complete degradation.

3. **Membrane Stability:** The acidic environment helps maintain the integrity of the lysosomal membrane, preventing leakage of hydrolytic enzymes into the cytosol and potential cellular damage.

The acidification of the lysosomal lumen is primarily achieved through the activity of the **vacuolar-type H+-ATPase (V-ATPase)**. This complex protein pump is embedded in the lysosomal membrane and utilizes the energy from ATP hydrolysis to transport protons (H+) from the cytosol into the lysosomal lumen. This active transport process establishes and maintains the proton gradient, creating the acidic environment.

In addition to the V-ATPase, other factors contribute to lysosomal acidification:

* **Chloride Channels:** These channels allow the movement of chloride ions (Cl-) out of the lysosome, which helps maintain the electrochemical gradient and facilitate proton transport.

* **Proton Antiporters:** These transporters exchange protons for other ions, such as sodium ions (Na+), further contributing to the proton gradient.

**Dysregulation of lysosomal acidification can have serious consequences for cell function and health. Mutations in V-ATPase subunits or other proteins involved in lysosomal acidification can lead to a range of lysosomal storage disorders, where the accumulation of undegraded substrates within lysosomes leads to cellular dysfunction and disease.**'
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Proteins (1)

ProteinDefinitionTaxonomy
V-type proton ATPase subunit S1A V-type proton ATPase subunit S1 that is encoded in the genome of human. [PRO:DNx, UniProtKB:Q15904]Homo sapiens (human)

Compounds (1)

CompoundDefinitionClassesRoles
bafilomycin a1bafilomycin A1 : The most used of the bafilomycins, a family of toxic macrolide antibiotics derived from Streptomyces griseus.

bafilomycin A1: from Streptomyces griseus; structure given in first source
cyclic hemiketal;
macrolide antibiotic;
oxanes
apoptosis inducer;
autophagy inhibitor;
bacterial metabolite;
EC 3.6.3.10 (H(+)/K(+)-exchanging ATPase) inhibitor;
EC 3.6.3.14 (H(+)-transporting two-sector ATPase) inhibitor;
ferroptosis inhibitor;
fungicide;
potassium ionophore;
toxin
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