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5'-3' RNA polymerase activity

Definition

Target type: molecularfunction

Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1); the synthesis of RNA from ribonucleotide triphosphates in the presence of a nucleic acid template, via extension of the 3'-end. [EC:2.7.7.6, GOC:mah, GOC:pf]

5'-3' RNA polymerase activity is the enzymatic process by which RNA polymerase, a multi-subunit protein complex, synthesizes a new RNA molecule using a DNA template strand. The process starts with the binding of RNA polymerase to a specific DNA sequence called the promoter. The enzyme then unwinds the DNA double helix, exposing the template strand. Using ribonucleoside triphosphates (NTPs) as substrates, RNA polymerase catalyzes the formation of phosphodiester bonds between the 3'-hydroxyl group of the growing RNA chain and the 5'-phosphate group of the incoming NTP, following the base pairing rules (adenine with uracil, guanine with cytosine). This process continues along the template strand, elongating the RNA molecule in a 5'-to-3' direction. The newly synthesized RNA strand, which is complementary to the template DNA strand, serves as a template for protein synthesis or acts as a functional RNA molecule in itself. RNA polymerase terminates transcription at specific DNA sequences called terminators, releasing the newly synthesized RNA molecule.'
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Proteins (4)

ProteinDefinitionTaxonomy
DNA-directed RNA polymerase subunit betaA DNA-directed RNA polymerase subunit beta that is encoded in the genome of Escherichia coli K-12. [PRO:DNx, UniProtKB:P0A8V2]Escherichia coli K-12
DNA-directed RNA polymerase subunit beta'A DNA-directed RNA polymerase subunit beta that is encoded in the genome of Escherichia coli K-12. [PRO:DNx, UniProtKB:P0A8T7]Escherichia coli K-12
DNA-directed RNA polymerase subunit omegaA DNA-directed RNA polymerase subunit omega that is encoded in the genome of Escherichia coli K-12. [PRO:DNx, UniProtKB:P0A800]Escherichia coli K-12
DNA-directed RNA polymerase subunit alphaA DNA-directed RNA polymerase subunit alpha that is encoded in the genome of Escherichia coli K-12. [PRO:DNx, UniProtKB:P0A7Z4]Escherichia coli K-12

Compounds (2)

CompoundDefinitionClassesRoles
quinacrinequinacrine : A member of the class of acridines that is acridine substituted by a chloro group at position 6, a methoxy group at position 2 and a [5-(diethylamino)pentan-2-yl]nitrilo group at position 9.

Quinacrine: An acridine derivative formerly widely used as an antimalarial but superseded by chloroquine in recent years. It has also been used as an anthelmintic and in the treatment of giardiasis and malignant effusions. It is used in cell biological experiments as an inhibitor of phospholipase A2.
acridines;
aromatic ether;
organochlorine compound;
tertiary amino compound
antimalarial;
EC 1.8.1.12 (trypanothione-disulfide reductase) inhibitor
rifamycin svrifamycin SV : A member of the class of rifamycins that exhibits antibiotic and antitubercular properties.

rifamycin SV: RN given refers to parent cpd; structure in Merck Index, 9th ed, #8009
acetate ester;
cyclic ketal;
lactam;
macrocycle;
organic heterotetracyclic compound;
polyphenol;
rifamycins
antimicrobial agent;
antitubercular agent;
bacterial metabolite