Page last updated: 2024-10-24

nitrate assimilation

Definition

Target type: biologicalprocess

The nitrogen metabolic process that encompasses the uptake of nitrate from the environment and reduction to ammonia, and results in the incorporation of nitrogen derived from nitrate into cellular substances. [GOC:das, GOC:mah, PMID:10542156, PMID:8122899]

Nitrate assimilation is a crucial biological process by which inorganic nitrate (NO3-) is converted into organic nitrogen compounds, primarily ammonia (NH3), which is then used for the synthesis of amino acids, proteins, and other nitrogen-containing molecules essential for life. This process occurs in two main stages:

1. **Nitrate Reduction:**
- Nitrate (NO3-) is first reduced to nitrite (NO2-) by the enzyme nitrate reductase. This enzyme utilizes NADH or NADPH as a reducing agent and requires molybdenum as a cofactor. The reaction takes place in the cytoplasm of plant cells and requires a supply of electrons from photosynthesis or other metabolic pathways.

2. **Nitrite Reduction:**
- Nitrite (NO2-) is then reduced to ammonia (NH3) by the enzyme nitrite reductase. This enzyme is located in the chloroplasts of plant cells and utilizes ferredoxin as an electron donor. The reaction occurs in a series of steps involving the transfer of electrons from ferredoxin to nitrite, ultimately leading to the formation of ammonia.

**Key aspects of nitrate assimilation:**

- **Energy requirement:** Nitrate assimilation is an energy-intensive process, requiring ATP and reducing power (NADH/NADPH) from photosynthesis or other metabolic pathways.
- **Regulation:** The process is tightly regulated by various factors, including the availability of nitrate, the cellular energy status, and the demand for nitrogen compounds.
- **Importance in nitrogen cycling:** Nitrate assimilation plays a critical role in the global nitrogen cycle, converting inorganic nitrogen from the environment into organic forms that are usable by living organisms.
- **Essential for plant growth:** Plants obtain most of their nitrogen from nitrate, making nitrate assimilation a vital process for their growth and development.
- **Significance in other organisms:** While plants are the primary organisms responsible for nitrate assimilation, it also occurs in various microorganisms, including bacteria and fungi.

In summary, nitrate assimilation is a fundamental biological process that enables organisms to convert inorganic nitrate into usable nitrogen compounds, ultimately supporting the production of essential molecules for life.'
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Proteins (4)

ProteinDefinitionTaxonomy
DNA-directed RNA polymerase subunit betaA DNA-directed RNA polymerase subunit beta that is encoded in the genome of Escherichia coli K-12. [PRO:DNx, UniProtKB:P0A8V2]Escherichia coli K-12
DNA-directed RNA polymerase subunit beta'A DNA-directed RNA polymerase subunit beta that is encoded in the genome of Escherichia coli K-12. [PRO:DNx, UniProtKB:P0A8T7]Escherichia coli K-12
DNA-directed RNA polymerase subunit omegaA DNA-directed RNA polymerase subunit omega that is encoded in the genome of Escherichia coli K-12. [PRO:DNx, UniProtKB:P0A800]Escherichia coli K-12
DNA-directed RNA polymerase subunit alphaA DNA-directed RNA polymerase subunit alpha that is encoded in the genome of Escherichia coli K-12. [PRO:DNx, UniProtKB:P0A7Z4]Escherichia coli K-12

Compounds (2)

CompoundDefinitionClassesRoles
quinacrinequinacrine : A member of the class of acridines that is acridine substituted by a chloro group at position 6, a methoxy group at position 2 and a [5-(diethylamino)pentan-2-yl]nitrilo group at position 9.

Quinacrine: An acridine derivative formerly widely used as an antimalarial but superseded by chloroquine in recent years. It has also been used as an anthelmintic and in the treatment of giardiasis and malignant effusions. It is used in cell biological experiments as an inhibitor of phospholipase A2.
acridines;
aromatic ether;
organochlorine compound;
tertiary amino compound
antimalarial;
EC 1.8.1.12 (trypanothione-disulfide reductase) inhibitor
rifamycin svrifamycin SV : A member of the class of rifamycins that exhibits antibiotic and antitubercular properties.

rifamycin SV: RN given refers to parent cpd; structure in Merck Index, 9th ed, #8009
acetate ester;
cyclic ketal;
lactam;
macrocycle;
organic heterotetracyclic compound;
polyphenol;
rifamycins
antimicrobial agent;
antitubercular agent;
bacterial metabolite