| Protein | Synonyms | Taxonomy |
|---|
| Probable NAD(P)H-dependent D-xylose reductase xyl1 | XR; EC 1.1.1.307 | Aspergillus niger CBS 513.88 |
| Glucose 1-dehydrogenase | GDH; GlcDH; EC 1.1.1.47; Aldose 1-dehydrogenase [NAD(P)(+)]; 1.1.1.359; Galactose 1-dehydrogenase; 1.1.1.120; 1.1.1.48 | Saccharolobus solfataricus |
| Ribulokinase | EC 2.7.1.16 | Escherichia coli K-12 |
| Xylulose kinase | XK; Xylulokinase; EC 2.7.1.17; 1-deoxy-D-xylulokinase; 2.7.1.- | Escherichia coli K-12 |
| D-xylulose reductase | EC 1.1.1.9; Xylitol dehydrogenase; XDH | Morganella morganii |
| Ribitol 2-dehydrogenase | RDH; EC 1.1.1.56 | Klebsiella aerogenes |
| Probable 2-dehydro-3-deoxy-D-pentonate aldolase YjhH | EC 4.1.2.28 | Escherichia coli K-12 |
| Putative 2-dehydro-3-deoxy-D-gluconate aldolase YagE | KDG aldolase YagE; EC 4.1.2.51; Putative 2-dehydro-3-deoxy-D-pentonate aldolase YagE; 4.1.2.28 | Escherichia coli K-12 |
| L-arabinitol 4-dehydrogenase | LAD; EC 1.1.1.12 | Aspergillus niger CBS 513.88 |
| L-arabinitol 4-dehydrogenase | LAD; EC 1.1.1.12 | Trichoderma reesei |
| L-arabinose isomerase | EC 5.3.1.4 | Escherichia coli K-12 |
| D-xylonate dehydratase | XAD; EC 4.2.1.82 | Haloferax volcanii DS2 |
| D-xylonate dehydratase YjhG | EC 4.2.1.82 | Escherichia coli K-12 |
| D-xylonate dehydratase YagF | EC 4.2.1.82 | Escherichia coli K-12 |
| D-xylose 1-dehydrogenase [NADP(+)] | XDH; EC 1.1.1.424 | Haloarcula marismortui ATCC 43049 |
| L-xylulose reductase | EC 1.1.1.10 | Trichoderma reesei QM6a |
| Malate synthase A | MSA; EC 2.3.3.9 | Escherichia coli K-12 |
| Malate synthase G | MSG; EC 2.3.3.9 | Escherichia coli K-12 |
| Lactaldehyde dehydrogenase | EC 1.2.1.22; Aldehyde dehydrogenase A; Glycolaldehyde dehydrogenase; 1.2.1.21 | Escherichia coli K-12 |
| Alpha-ketoglutarate semialdehyde dehydrogenase | KGSADH; EC 1.2.1.26 | Haloferax volcanii DS2 |
| 2,5-dioxopentanoate dehydrogenase | EC 1.2.1.26; Aldehyde dehydrogenase T; Alpha-ketoglutaric semialdehyde dehydrogenase AldhT | Saccharolobus solfataricus P2 |
| L-fucose isomerase | FucIase; EC 5.3.1.25; 6-deoxy-L-galactose isomerase; D-arabinose isomerase; 5.3.1.3 | Escherichia coli K-12 |
| L-xylulose/3-keto-L-gulonate kinase | L-xylulokinase; EC 2.7.1.-; EC 2.7.1.53; 3-dehydro-L-gulonate kinase | Escherichia coli K-12 |
| L-rhamnose isomerase | EC 5.3.1.14 | Escherichia coli K-12 |
| 2-dehydro-3-deoxy-phosphogluconate/2-dehydro-3-deoxy-6-phosphogalactonate aldolase | EC 4.1.2.55 | Saccharolobus solfataricus |
| Arabinonate dehydratase | EC 4.2.1.5 | Saccharolobus solfataricus P2 |
| 2-dehydro-3-deoxy-D-arabinonate dehydratase | EC 4.2.1.141; 2-keto-3-deoxy-D-arabinonate dehydratase; KdaD | Saccharolobus solfataricus P2 |
| Xylose isomerase | EC 5.3.1.5; D-xylulose keto-isomerase | Escherichia coli K-12 |
| L-ribulose-5-phosphate 4-epimerase AraD | EC 5.1.3.4; Phosphoribulose isomerase | Escherichia coli K-12 |
| L-fuculose phosphate aldolase | EC 4.1.2.17; D-ribulose-phosphate aldolase; L-fuculose-1-phosphate aldolase | Escherichia coli K-12 |
| L-fuculokinase | EC 2.7.1.51; L-fuculose kinase | Escherichia coli K-12 |
| L-ribulose-5-phosphate 4-epimerase SgbE | EC 5.1.3.4; Phosphoribulose isomerase | Escherichia coli K-12 |
| Probable 2-keto-3-deoxyxylonate dehydratase | KDXD; EC 4.2.1.141 | Haloferax volcanii DS2 |
| Pentonolactonase XacC | EC 3.1.1.15; EC 3.1.1.68; L-arabinonolactonase; Xylono-1,4-lactonase | Haloferax volcanii DS2 |
| D-xylulose reductase A | EC 1.1.1.9; Xylitol dehydrogenase A | Aspergillus oryzae RIB40 |
| NAD(P)H-dependent D-xylose reductase xyl1 | XR; EC 1.1.1.- | Trichoderma reesei |
| D-xylulose kinase A | Xylulokinase A; EC 2.7.1.17 | Aspergillus niger |
| Xylitol dehydrogenase | | Trichoderma reesei |
| Xylonate dehydratase xylD | | Caulobacter vibrioides NA1000 |
| Fumarylacetoacetate hydrolase family protein | | Caulobacter vibrioides NA1000 |
| Xylonolactonase xylC | | Caulobacter vibrioides NA1000 |
| Alpha-ketoglutaric semialdehyde dehydrogenase xylA | | Caulobacter vibrioides NA1000 |
| Xylulokinase | | Morganella morganii |
| D-xylose reductase | | Aspergillus niger CBS 513.88 |
| Alcohol dehydrogenase | | Saccharolobus solfataricus P2 |
| D-xylose 1-dehydrogenase [NADP(+)] 1 | XDH 1; EC 1.1.1.424 | Haloferax volcanii DS2 |
| Compound | Description |
|---|
| hydronium ion | |
| Cobalt | A trace element that is a component of vitamin B12. It has the atomic symbol Co, atomic number 27, and atomic weight 58.93. It is used in nuclear weapons, alloys, and pigments. Deficiency in animals leads to anemia; its excess in humans can lead to erythrocytosis. |
| xylose | |
| ferrous sulfide | RN given refers to cpd with MF of Fe-S; mackinawite & troilite both have MF Fe-S |
| NADH | |
| Mercury | A silver metallic element that exists as a liquid at room temperature. It has the atomic symbol Hg (from hydrargyrum, liquid silver), atomic number 80, and atomic weight 200.59. Mercury is used in many industrial applications and its salts have been employed therapeutically as purgatives, antisyphilitics, disinfectants, and astringents. It can be absorbed through the skin and mucous membranes which leads to MERCURY POISONING. Because of its toxicity, the clinical use of mercury and mercurials is diminishing. |
| Manganese | A trace element with atomic symbol Mn, atomic number 25, and atomic weight 54.94. It is concentrated in cell mitochondria, mostly in the pituitary gland, liver, pancreas, kidney, and bone, influences the synthesis of mucopolysaccharides, stimulates hepatic synthesis of cholesterol and fatty acids, and is a cofactor in many enzymes, including arginase and alkaline phosphatase in the liver. (From AMA Drug Evaluations Annual 1992, p2035) |
| Zinc | A metallic element of atomic number 30 and atomic weight 65.38. It is a necessary trace element in the diet, forming an essential part of many enzymes, and playing an important role in protein synthesis and in cell division. Zinc deficiency is associated with ANEMIA, short stature, HYPOGONADISM, impaired WOUND HEALING, and geophagia. It is known by the symbol Zn. |
| potassium chloride | A white crystal or crystalline powder used in BUFFERS; FERTILIZERS; and EXPLOSIVES. It can be used to replenish ELECTROLYTES and restore WATER-ELECTROLYTE BALANCE in treating HYPOKALEMIA. |
| Sodium Chloride | A ubiquitous sodium salt that is commonly used to season food. |
| adenosine diphosphate | Adenosine 5'-(trihydrogen diphosphate). An adenine nucleotide containing two phosphate groups esterified to the sugar moiety at the 5'-position. |
| Magnesium | A metallic element that has the atomic symbol Mg, atomic number 12, and atomic weight 24.31. It is important for the activity of many enzymes, especially those involved in OXIDATIVE PHOSPHORYLATION. |
| Water | A clear, odorless, tasteless liquid that is essential for most animal and plant life and is an excellent solvent for many substances. The chemical formula is hydrogen oxide (H2O). (McGraw-Hill Dictionary of Scientific and Technical Terms, 4th ed) |
| Adenylyl Imidodiphosphate | 5'-Adenylic acid, monoanhydride with imidodiphosphoric acid. An analog of ATP, in which the oxygen atom bridging the beta to the gamma phosphate is replaced by a nitrogen atom. It is a potent competitive inhibitor of soluble and membrane-bound mitochondrial ATPase and also inhibits ATP-dependent reactions of oxidative phosphorylation. |
| Pyruvic Acid | An intermediate compound in the metabolism of carbohydrates, proteins, and fats. In thiamine deficiency, its oxidation is retarded and it accumulates in the tissues, especially in nervous structures. (From Stedman, 26th ed) |
| 1,10-phenanthroline | RN given refers to parent cpd; inhibits Zn-dependent metalloproteinases |
| mercaptoethanol | A water-soluble thiol derived from hydrogen sulfide and ethanol. It is used as a reducing agent for disulfide bonds and to protect sulfhydryl groups from oxidation. |
| adenosine monophosphate | Adenine nucleotide containing one phosphate group esterified to the sugar moiety in the 2'-, 3'-, or 5'-position. |
| nad | A coenzyme composed of ribosylnicotinamide 5'-diphosphate coupled to adenosine 5'-phosphate by pyrophosphate linkage. It is found widely in nature and is involved in numerous enzymatic reactions in which it serves as an electron carrier by being alternately oxidized (NAD+) and reduced (NADH). (Dorland, 27th ed) |
| NADP | Nicotinamide adenine dinucleotide phosphate. A coenzyme composed of ribosylnicotinamide 5'-phosphate (NMN) coupled by pyrophosphate linkage to the 5'-phosphate adenosine 2',5'-bisphosphate. It serves as an electron carrier in a number of reactions, being alternately oxidized (NADP+) and reduced (NADPH). (Dorland, 27th ed) |
| NADP | Nicotinamide adenine dinucleotide phosphate. A coenzyme composed of ribosylnicotinamide 5'-phosphate (NMN) coupled by pyrophosphate linkage to the 5'-phosphate adenosine 2',5'-bisphosphate. It serves as an electron carrier in a number of reactions, being alternately oxidized (NADP+) and reduced (NADPH). (Dorland, 27th ed) |
| alpha-Ketoglutarate | |
| L-arabino-1,4-lactone | |
| Cadmium | An element with atomic symbol Cd, atomic number 48, and atomic weight 112.41. It is a metal and ingestion will lead to CADMIUM POISONING. |
| glyoxylate | |
| dithiothreitol | A reagent commonly used in biochemical studies as a protective agent to prevent the oxidation of SH (thiol) groups and for reducing disulphides to dithiols. |
| xylulose | A 5-carbon keto sugar. |
| xylulose-5-phosphate | RN given refers to cpd with unspecified isomeric designation |
| glycolate | |
| adenosine triphosphate | An adenine nucleotide containing three phosphate groups esterified to the sugar moiety. In addition to its crucial roles in metabolism adenosine triphosphate is a neurotransmitter. |
| 2-keto-3-deoxy-D-xylonate | structure in first source |
| ribulose, (erythro-L)-isomer | |
| xylitol | A five-carbon sugar alcohol derived from XYLOSE by reduction of the carbonyl group. It is as sweet as sucrose and used as a noncariogenic sweetener. |
| glycolaldehyde | structure |
| arabitol | RN given refers to cpd without isomeric designation |
| galactitol | A naturally occurring product of plants obtained following reduction of GALACTOSE. It appears as a white crystalline powder with a slight sweet taste. It may form in excess in the lens of the eye in GALACTOSEMIAS, a deficiency of GALACTOKINASE. |
| ribulose | 5-carbon keto sugar; minor descriptor (75-85); on-line & Index Medicus search PENTOSES (75-85); RN given refers to (erythro)-isomer |
| oxiconazole | RN given refers to parent cpd(Z)-isomer; structure given in first source |
| Glycerol | A trihydroxy sugar alcohol that is an intermediate in carbohydrate and lipid metabolism. It is used as a solvent, emollient, pharmaceutical agent, or sweetening agent. |
| Coenzyme A | |
| Ditiocarb | A chelating agent that has been used to mobilize toxic metals from the tissues of humans and experimental animals. It is the main metabolite of DISULFIRAM. |
| Emetine | The principal alkaloid of ipecac, from the ground roots of Uragoga (or Cephaelis) ipecacuanha or U. acuminata, of the Rubiaceae. It is used as an amebicide in many different preparations and may cause serious cardiac, hepatic, or renal damage and violent diarrhea and vomiting. Emetine inhibits protein synthesis in EUKARYOTIC CELLS but not PROKARYOTIC CELLS. |
| Acetyl Coenzyme A | Acetyl CoA participates in the biosynthesis of fatty acids and sterols, in the oxidation of fatty acids and in the metabolism of many amino acids. It also acts as a biological acetylating agent. |