Page last updated: 2024-10-06

rRNA modification in the nucleus and cytosol

Proteins (58)

ProteinSynonymsTaxonomy
Ribosomal RNA small subunit methyltransferase NEP1EC 2.1.1.-; 18S rRNA (pseudouridine(1248)-N1)-methyltransferase; 18S rRNA Psi1248 methyltransferase; Nucleolar protein EMG1 homolog; Protein C2f; Ribosome biogenesis protein NEP1Homo sapiens (human)
RNA cytidine acetyltransferaseEC 2.3.1.-; 18S rRNA cytosine acetyltransferase; N-acetyltransferase 10; N-acetyltransferase-like protein; hALPHomo sapiens (human)
Something about silencing protein 10Charged amino acid-rich leucine zipper 1; CRL1; Disrupter of silencing SAS10; UTP3 homologHomo sapiens (human)
40S ribosomal protein S240S ribosomal protein S4; Protein LLRep3; Small ribosomal subunit protein uS5Homo sapiens (human)
40S ribosomal protein S9Small ribosomal subunit protein uS4Homo sapiens (human)
40S ribosomal protein S7Small ribosomal subunit protein eS7Homo sapiens (human)
40S ribosomal protein S14Small ribosomal subunit protein uS11Homo sapiens (human)
40S ribosomal protein S6Phosphoprotein NP33; Small ribosomal subunit protein eS6Homo sapiens (human)
Nucleolar protein 6Nucleolar RNA-associated protein; NrapHomo sapiens (human)
Multifunctional methyltransferase subunit TRM112-like proteintRNA methyltransferase 112 homologHomo sapiens (human)
U3 small nucleolar ribonucleoprotein protein MPP10M phase phosphoprotein 10Homo sapiens (human)
Nucleolar protein 56Nucleolar protein 5AHomo sapiens (human)
WD repeat-containing protein 46WD repeat-containing protein BING4Homo sapiens (human)
Probable 18S rRNA (guanine-N(7))-methyltransferaseEC 2.1.1.-; Bud site selection protein 23 homolog; Metastasis-related methyltransferase 1; Williams-Beuren syndrome chromosomal region 22 protein; rRNA methyltransferase and ribosome maturation factorHomo sapiens (human)
U3 small nucleolar RNA-interacting protein 2RRP9 homolog; U3 small nucleolar ribonucleoprotein-associated 55 kDa protein; U3 snoRNP-associated 55 kDa protein; U3-55KHomo sapiens (human)
H/ACA ribonucleoprotein complex subunit DKC1EC 5.4.99.-; CBF5 homolog; Dyskerin; Nopp140-associated protein of 57 kDa; Nucleolar protein NAP57; Nucleolar protein family A member 4; snoRNP protein DKC1Homo sapiens (human)
Small subunit processome component 20 homologDown-regulated in metastasis protein; Novel nucleolar protein 73; NNP73; Protein Key-1A6Homo sapiens (human)
rRNA 2'-O-methyltransferase fibrillarinEC 2.1.1.-; 34 kDa nucleolar scleroderma antigen; Histone-glutamine methyltransferase; U6 snRNA 2'-O-methyltransferase fibrillarinHomo sapiens (human)
Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferaseEC 2.1.1.-; Nucleolar protein 1; Nucleolar protein 2 homolog; Proliferating-cell nucleolar antigen p120; Proliferation-associated nucleolar protein p120Homo sapiens (human)
NHP2-like protein 1High mobility group-like nuclear protein 2 homolog 1; OTK27; SNU13 homolog; hSNU13; U4/U6.U5 small nuclear ribonucleoprotein SNU13; U4/U6.U5 tri-snRNP 15.5 kDa proteinHomo sapiens (human)
Nucleolar protein 14Nucleolar complex protein 14Homo sapiens (human)
Transducin beta-like protein 3WD repeat-containing protein SAZDHomo sapiens (human)
KRR1 small subunit processome component homologHIV-1 Rev-binding protein 2; KRR-R motif-containing protein 1; Rev-interacting protein 1; Rip-1Homo sapiens (human)
Protein RRP5 homologNF-kappa-B-binding protein; NFBP; Programmed cell death protein 11Homo sapiens (human)
Ribosome biogenesis protein BMS1 homologRibosome assembly protein BMS1 homologHomo sapiens (human)
WD repeat-containing protein 43U3 small nucleolar RNA-associated protein 5 homologHomo sapiens (human)
Periodic tryptophan protein 2 homologHomo sapiens (human)
Digestive organ expansion factor homologHomo sapiens (human)
WD repeat-containing protein 75U3 small nucleolar RNA-associated protein 17 homologHomo sapiens (human)
Probable ATP-dependent RNA helicase DHX37EC 3.6.4.13; DEAH box protein 37Homo sapiens (human)
WD repeat-containing protein 36T-cell activation WD repeat-containing protein; TA-WDRPHomo sapiens (human)
U3 small nucleolar RNA-associated protein 15 homologHomo sapiens (human)
U3 small nucleolar RNA-associated protein 4 homologCirhin; UTP4 small subunit processome componentHomo sapiens (human)
Ribosomal RNA processing protein 36 homologHomo sapiens (human)
U3 small nucleolar ribonucleoprotein protein IMP4U3 snoRNP protein IMP4; Brix domain-containing protein 4Homo sapiens (human)
Nucleolar complex protein 4 homologNOC4 protein homolog; NOC4-like protein; Nucleolar complex-associated protein 4-like proteinHomo sapiens (human)
Probable ATP-dependent RNA helicase DDX47EC 3.6.4.13; DEAD box protein 47Homo sapiens (human)
HEAT repeat-containing protein 1Protein BAP28; U3 small nucleolar RNA-associated protein 10 homologHomo sapiens (human)
Nucleolar protein 11Homo sapiens (human)
H/ACA ribonucleoprotein complex subunit 3Nucleolar protein 10; Nucleolar protein family A member 3; snoRNP protein NOP10Homo sapiens (human)
RNA-binding protein PNO1Partner of NOB1Homo sapiens (human)
DDB1- and CUL4-associated factor 13WD repeat and SOF domain-containing protein 1Homo sapiens (human)
U3 small nucleolar ribonucleoprotein protein IMP3U3 snoRNP protein IMP3; BRMS2Homo sapiens (human)
H/ACA ribonucleoprotein complex subunit 2Nucleolar protein family A member 2; snoRNP protein NHP2Homo sapiens (human)
THUMP domain-containing protein 1Homo sapiens (human)
H/ACA ribonucleoprotein complex subunit 1Nucleolar protein family A member 1; snoRNP protein GAR1Homo sapiens (human)
U3 small nucleolar RNA-associated protein 6 homologHepatocellular carcinoma-associated antigen 66; Multiple hat domains proteinHomo sapiens (human)
18S rRNA aminocarboxypropyltransferaseEC 2.5.1.-; 20S S rRNA accumulation protein 3 homolog; HsTsr3Homo sapiens (human)
Probable dimethyladenosine transferaseEC 2.1.1.183; DIM1 dimethyladenosine transferase 1 homolog; DIM1 dimethyladenosine transferase 1-like; Probable 18S rRNA (adenine(1779)-N(6)/adenine(1780)-N(6))-dimethyltransferase; Probable 18S rRNA dimethylase; Probable S-adenosylmethionine-6-N',N'-adenHomo sapiens (human)
WD repeat-containing protein 3Homo sapiens (human)
RNA 3'-terminal phosphate cyclase-like proteinHomo sapiens (human)
Probable ATP-dependent RNA helicase DDX52EC 3.6.4.13; ATP-dependent RNA helicase ROK1-like; DEAD box protein 52Homo sapiens (human)
Nucleolar protein 58Nucleolar protein 5Homo sapiens (human)
rRNA-processing protein FCF1 homologHomo sapiens (human)
Probable U3 small nucleolar RNA-associated protein 11U3 snoRNA-associated protein 11; UTP11-like proteinHomo sapiens (human)
Ribosomal RNA-processing protein 7 homolog AGastric cancer antigen Zg14Homo sapiens (human)
U3 small nucleolar RNA-associated protein 18 homologWD repeat-containing protein 50Homo sapiens (human)
Probable ATP-dependent RNA helicase DDX49EC 3.6.4.13; DEAD box protein 49Homo sapiens (human)

Compounds (7)

CompoundDescription
Orthophosphate
adenosine diphosphateAdenosine 5'-(trihydrogen diphosphate). An adenine nucleotide containing two phosphate groups esterified to the sugar moiety at the 5'-position.
5'-methylthioadenosinestructure
adenosine triphosphateAn adenine nucleotide containing three phosphate groups esterified to the sugar moiety. In addition to its crucial roles in metabolism adenosine triphosphate is a neurotransmitter.
s-adenosylmethioninePhysiologic methyl radical donor involved in enzymatic transmethylation reactions and present in all living organisms. It possesses anti-inflammatory activity and has been used in treatment of chronic liver disease. (From Merck, 11th ed)
Coenzyme A
Acetyl Coenzyme AAcetyl CoA participates in the biosynthesis of fatty acids and sterols, in the oxidation of fatty acids and in the metabolism of many amino acids. It also acts as a biological acetylating agent.