uridine has been researched along with anticodon in 92 studies
Timeframe | Studies, this research(%) | All Research% |
---|---|---|
pre-1990 | 29 (31.52) | 18.7374 |
1990's | 17 (18.48) | 18.2507 |
2000's | 23 (25.00) | 29.6817 |
2010's | 19 (20.65) | 24.3611 |
2020's | 4 (4.35) | 2.80 |
Authors | Studies |
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Dirheimer, G; Kuntzel, B; Lane, BG; Tumaitis-Kennedy, TD; Weissenbach, J; Wolff, RE | 1 |
Schulman, LH; Stern, L | 1 |
Brown, A; Pope, WT; Reeves, RH | 1 |
Dirheimer, G; Weissenbach, J | 1 |
Ames, BN; Landsberg, R; Neill, RJ; Turnbough, CL | 1 |
Hasegawa, T; Ishikura, H | 1 |
Goto, T; Kawakami, M; Kondo, T; Nishio, K; Takemura, S | 1 |
Berman, HM; Marcu, D; Narayanan, P | 1 |
Altman, S | 1 |
Quigley, GJ; Rich, A | 1 |
Hasegawa, T; Ishikura, H; Murao, K | 1 |
Ikeda, K; Mizuno, Y; Tanaka, S | 1 |
Ishikura, H; Jia, HT; Matsugi, J; Murao, K | 1 |
Desgrès, J; el Adlouni, C; Glasser, AL; Keith, G; Malkiewicz, A; Santos, M; Sochacka, E; Tuite, MF | 1 |
Amano, M; Kawakami, M | 1 |
Foss, K; Jenkins, RA; McClain, WH; Schneider, J | 1 |
Dirheimer, G; Edmonds, CG; Gehrke, CW; Kuo, K; Martin, RP; McCloskey, JA; Sibler, AP | 1 |
Desgrès, J; Gehrke, CW; Heyman, T; Keith, G; Kuo, KC; Pochart, P | 1 |
Björk, GR; Ericson, JU | 1 |
Kuchino, Y | 1 |
Miyazawa, T; Yokoyama, S | 1 |
Behra, R; Choffat, Y; Kubli, E; Suter, B | 1 |
Fukami, T; Goto, T; Kawakami, M; Kondo, T; Takemura, S | 1 |
Kawakami, M; Kondo, T; Ogawa, K; Takemura, S | 2 |
Ishikura, H; Miyazawa, T; Murao, K; Nishimura, S; Watanabe, T; Yamaizumi, Z; Yokoyama, S | 1 |
Miyazawa, T; Nishimura, S; Yamaizumi, Z; Yamamoto, N; Yokoyama, S | 1 |
Adamiak, RW; Górnicki, P | 1 |
Alzner-DeWeerd, B; Ching, WM; Stadtman, TC | 1 |
Iitaka, Y; Morikawa, K; Nishimura, S; Torii, K; Tsuboi, M | 1 |
Alzner-DeWeerd, B; Heckman, JE; RajBhandary, UL; Sarnoff, J; Yin, S | 1 |
Armstrong, PW; Barrell, BG; Chen, EY; de Bruijn, MH; Eperon, IC; Roe, BA; Schreier, PH; Wong, JF | 1 |
Beresten, SF; Kisselev, LL; Mashkova, TD; Mazo, AM; Scheinker, VS | 1 |
Anderson, S; Bankier, AT; Barrell, BG; Chen, E; Coulson, AR; de Bruijn, MH; Drouin, J; Eperon, IC; Nierlich, DP; Roe, BA; Sanger, F; Schreier, PH; Smith, AJ; Staden, R; Young, IG | 1 |
Lowary, PT; Uhlenbeck, OC; Wittenberg, WL | 1 |
Bessho, Y; Hori, H; Inagaki, Y; Kojima, A; Ohama, T; Osawa, S | 1 |
Kawai, G; Miyazawa, T; Niimi, T; Nishimura, S; Sakamoto, K; Satoh, T; Sekine, M; Yamaizumi, Z; Yokoyama, S | 1 |
Carbon, P; Keith, G; Krol, A; Lescure, A; Sturchler, C | 1 |
Hayashi, N; Kawai, G; Muto, Y; Niimi, T; Sakamoto, K; Satoh, T; Sekine, M; Watanabe, K; Watanabe, S; Yokoyama, S | 1 |
Okumura, S; Takai, K; Takaku, H; Yokoyama, S | 1 |
Auffinger, P; Westhof, E | 2 |
Goldman, E; Horie, N; Kuchino, Y; Miyazawa, T; Nishimura, S; Takai, K; Yamaizumi, Z; Yokoyama, S | 1 |
Agris, PF; Ansari, G; Ashraf, SS; Guenther, R; Malkiewicz, A; Sochacka, E | 1 |
Hosono, K; Okumura, S; Takai, K; Takaku, H; Yokoyama, S | 1 |
Agris, PF; Guenther, R; Koshlap, KM; Malkiewicz, A; Sochacka, E | 1 |
Agris, PF; Ansari, G; Basti, MM; Cain, RJ; Czerwinska, G; Guenther, RH; Malkiewicz, A; Sochacka, E; Yarian, CS | 1 |
Foster, PG; Huang, L; Santi, DV; Stroud, RM | 1 |
Ishii, N; Ohta, S; Suzuki, T; Ueda, T; Watanabe, K; Yasukawa, T | 1 |
Hang, J; Liu, H; Wong, JT; Xue, H; Yan, X; Zhu, G | 1 |
Agris, PF; Cain, R; Czerwinska, G; Guenther, R; Malkiewicz, A; Sochacka, E | 1 |
Davis, DR; Durant, PC; Sundaram, M | 1 |
Agris, PF; Guenther, R; Malkiewicz, A; Marszalek, M; Miskiewicz, A; Sochacka, E; Yarian, C | 1 |
Alfonzo, JD; Crain, PF; Kapushoc, ST; McCloskey, JA; Rozenski, J; Simpson, L | 1 |
Saigo, K; Suzuki, T; Wada, T; Watanabe, K | 1 |
Kirino, Y; Kurata, S; Ohtsuki, T; Saigo, K; Suzuki, T; Takai, K; Wada, T; Watanabe, K | 1 |
Takai, K; Yokoyama, S | 1 |
Kurata, S; Ohtsuki, T; Suzuki, T; Watanabe, K | 1 |
Farhi, A; Hariri, A; Kashgarian, M; Lifton, RP; Nelson-Williams, C; Petersen, KF; Raja, KM; Scheinman, SJ; Shulman, GI; Toka, HR; Wilson, FH; Zhao, H | 1 |
Holt, IJ; Jacobs, HT; Kirino, Y; Marjavaara, SK; Suzuki, T; Watanabe, K; Yasukawa, T | 1 |
Kim, KI; McCrate, NE; Nagan, MC; Varner, ME | 1 |
Byström, AS; Esberg, A; Huang, B; Johansson, MJ | 1 |
Takai, K | 2 |
Agris, PF; Dziergowska, A; Malkiewicz, A; Murphy, FV; Ramakrishnan, V; Vendeix, FA; Weixlbaumer, A | 1 |
Agris, PF; Dubois, DY; Gustilo, EM; Lapointe, J | 1 |
Björk, GR; Byström, AS; Esberg, A; Huang, B; Johansson, MJ | 1 |
Kirino, Y; Kurata, S; Ohtsuki, T; Ramakrishnan, V; Shimazaki, T; Suzuki, T; Takai, K; Wada, T; Watanabe, K; Weixlbaumer, A | 1 |
Bär, C; Jablonowski, D; Schaffrath, R; Studte, P; Tuite, MF; von der Haar, T; Zink, S | 1 |
Inanaga, H; Ito, K; Numata, T; Nureki, O; Osawa, T; Tomita, K | 1 |
Dai, Q; Fu, Y; He, C; Pan, T; Ren, J; Zhang, W | 1 |
Kondow, A; Miyauchi, K; Shigi, N; Suzuki, T; Takeuchi, N; Watanabe, K; Yamagishi, A; Yokobori, SI | 1 |
Hirata, A; Hori, H; Ishitani, R; Iwashita, C; Nishimasu, H; Nureki, O; Ochi, A; Tomikawa, C; Yamagami, R; Yamashita, K | 1 |
Alkatib, S; Bock, R; Fleischmann, TT; Matthes, A; Rogalski, M; Ruf, S; Scharff, LB; Schöttler, MA; Seeger, S | 1 |
Bartos, P; Kraszewska, K; Nawrot, B; Sochacka, E | 1 |
Alfonzo, JD; Helm, M | 1 |
Babu, IR; Blum, P; Chan, CT; Dedon, PC; Köhrer, C; Kuwahara, M; Liu, Y; Mandal, D; Rajbhandary, UL; Söll, D; Su, D | 1 |
Bavi, RS; Kamble, AS; Kumbhar, BV; Sambhare, SB; Sonawane, KD | 1 |
Armengod, ME; Garzón, MJ; Martínez-Zamora, A; Meseguer, S; Moukadiri, I; Navarro-González, C; Prado, S; Ruiz-Partida, R; Villarroya, M | 1 |
Byström, AS; Karlsborn, T; Mahmud, AK; Tükenmez, H; Xu, F; Xu, H | 1 |
Byström, AS; Esberg, A; Tükenmez, H; Xu, H | 1 |
Kimura, S; Miyauchi, K; Sakai, Y; Suzuki, T | 1 |
Fandilolu, PM; Kamble, AS; Sambhare, SB; Sonawane, KD | 1 |
Byström, AS; Johansson, MJO; Xu, F | 1 |
Bruch, A; Glatt, S; Klassen, R; Schaffrath, R; Sokołowski, M | 1 |
Gamper, H; Hou, YM; Limbach, PA; Masuda, I; Matsubara, R; Paulines, MJ; Takase, R | 1 |
Bhatt, MJ; Farabaugh, PJ; Joshi, K | 1 |
Abdel-Fattah, W; Breunig, KD; Glatt, S; Hammermeister, A; Helm, M; Krutyhołowa, R; Reinhardt-Tews, A; Schaffrath, R; Stark, MJR; Zabel, R | 1 |
Chattopadhyay, M; Keller, C; Tabor, H | 1 |
Gräf, S; Hammann, C; Jablonski, KP; Kellner, S; Klassen, R; Schäck, MA; Schaffrath, R | 1 |
Aono, T; Hidaka, M; Ishida, W; Masaki, H; Ogawa, T; Takahashi, K; Terada, T | 1 |
Kim, J; Lee, J; Yoo, J | 1 |
8 review(s) available for uridine and anticodon
Article | Year |
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[Natural UAG suppressor glutamine tRNA in retrovirus infected cells].
Topics: Adenosine; Animals; Anticodon; Cattle; Codon; Gene Expression Regulation; Genes, Viral; Guanosine; Humans; Mice; Rats; Retroviridae; Retroviridae Infections; RNA, Messenger; RNA, Transfer, Amino Acid-Specific; RNA, Transfer, Gln; Suppression, Genetic; Uridine | 1989 |
[Post-transcriptional modifications of tRNA and molecular mechanism of genetic code decoding].
Topics: Amino Acids; Anticodon; Codon; Genetic Code; Protein Conformation; RNA Processing, Post-Transcriptional; RNA, Transfer; RNA, Transfer, Amino Acyl; Uridine | 1988 |
Hypermodified nucleosides of tRNA: synthesis, chemistry, and structural features of biological interest.
Topics: Adenosine; Anticodon; Codon; Guanosine; Indicators and Reagents; Nucleic Acid Conformation; Nucleosides; RNA, Transfer; Structure-Activity Relationship; Uridine | 1985 |
Posttranscriptional RNA Modifications: playing metabolic games in a cell's chemical Legoland.
Topics: Anticodon; Bacteria; Eukaryotic Cells; Metabolic Networks and Pathways; Nucleic Acid Conformation; RNA; RNA Processing, Post-Transcriptional; RNA, Transfer; Uridine | 2014 |
Modification of the wobble uridine in bacterial and mitochondrial tRNAs reading NNA/NNG triplets of 2-codon boxes.
Topics: Anticodon; Cell Nucleus; Codon; Escherichia coli; Escherichia coli Proteins; GTP Phosphohydrolases; Mitochondria; Multienzyme Complexes; One-Carbon Group Transferases; Oxidative Phosphorylation; RNA; RNA Processing, Post-Transcriptional; RNA, Mitochondrial; RNA, Transfer, Amino Acid-Specific; Signal Transduction; Uridine | 2014 |
Elongator, a conserved complex required for wobble uridine modifications in eukaryotes.
Topics: Animals; Anticodon; Arabidopsis; Codon; Genetic Code; Histone Acetyltransferases; Humans; Isoenzymes; Mice; RNA Processing, Post-Transcriptional; RNA-Binding Proteins; RNA, Transfer; Saccharomyces cerevisiae; Schizosaccharomyces; Uridine | 2014 |
Elongator-a tRNA modifying complex that promotes efficient translational decoding.
Topics: Animals; Anticodon; Codon; Eukaryotic Cells; Gene Expression Regulation, Fungal; Genetic Code; Histone Acetyltransferases; Humans; Models, Genetic; Molecular Structure; Multiprotein Complexes; Protein Biosynthesis; RNA Processing, Post-Transcriptional; RNA, Fungal; RNA, Transfer; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins; Uridine | 2018 |
Cooperativity between different tRNA modifications and their modification pathways.
Topics: Animals; Anticodon; Endoribonucleases; Eukaryotic Cells; Humans; Mitochondrial Diseases; Models, Molecular; Multiprotein Complexes; Neoplasms; Nervous System Diseases; Nucleic Acid Conformation; Protein Biosynthesis; RNA Processing, Post-Transcriptional; RNA Stability; RNA-Binding Proteins; RNA, Fungal; RNA, Neoplasm; RNA, Transfer; Saccharomyces cerevisiae Proteins; Schizosaccharomyces pombe Proteins; tRNA Methyltransferases; Uridine | 2018 |
84 other study(ies) available for uridine and anticodon
Article | Year |
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Presence of the methylester of 5-carboxymethyl uridine in the wobble position of the anticodon of tRNAIII Arg from brewer's yeast.
Topics: Anticodon; Arginine; Carbon Radioisotopes; Carboxylic Acids; Chromatography, DEAE-Cellulose; Chromatography, Gas; Chromatography, Paper; Chromatography, Thin Layer; Electrophoresis, Paper; Escherichia coli; Mass Spectrometry; Methylation; Pancreas; Phosphoric Monoester Hydrolases; Ribonucleases; RNA, Transfer; Spectrophotometry, Ultraviolet; Uridine; Yeasts | 1975 |
Role of anticodon bases in aminoacylation of Escherichia coli methionine transfer RNAs.
Topics: Anticodon; Base Sequence; Cytidine; Escherichia coli; Methionine-tRNA Ligase; N-Formylmethionine; RNA, Transfer; Transfer RNA Aminoacylation; Uridine | 1977 |
The identification of the tRNA substrates for the supK tRNA methylase.
Topics: Alanine; Anticodon; Hydrolysis; RNA, Bacterial; RNA, Transfer; Salmonella typhimurium; Serine; tRNA Methyltransferases; Uridine | 1978 |
Pairing properties of the methylester of 5-carboxymethyl uridine in the wobble position of yeast tRNA3Arg.
Topics: Anticodon; Arginine; Base Sequence; Binding Sites; Codon; Polyribonucleotides; Protein Biosynthesis; Ribosomes; RNA, Messenger; RNA, Transfer; Saccharomyces cerevisiae; Uridine | 1978 |
Pseudouridylation of tRNAs and its role in regulation in Salmonella typhimurium.
Topics: Amino Acyl-tRNA Synthetases; Anticodon; Mutation; Pseudouridine; RNA, Transfer; RNA, Transfer, Amino Acyl; Salmonella typhimurium; Uridine | 1979 |
Nucleotide sequence of threonine tRNA from Bacillus subtilis.
Topics: Anticodon; Bacillus subtilis; Base Sequence; RNA, Bacterial; RNA, Transfer; Threonine; Uridine | 1978 |
5-(Carboxy-hydroxymethyl)uridine, a new modified nucleoside located in the anticodon of tRNA2Gly from the posterior silk glands of Bombyx mori.
Topics: Animals; Anticodon; Bombyx; Glycine; Magnetic Resonance Spectroscopy; Mass Spectrometry; RNA, Transfer; Spectrophotometry, Ultraviolet; Uridine | 1979 |
Modified bases in tRNA: the structures of 5-carbamoylmethyl- and 5-carboxymethyl uridine.
Topics: Anticodon; Hydrogen Bonding; Structure-Activity Relationship; Uridine; X-Ray Diffraction | 1978 |
A modified uridine in the anticodon of E. coli tRNA I Tyr su + oc.
Topics: Anticodon; Base Sequence; Chromatography, Thin Layer; Escherichia coli; Ribonucleases; Ribonucleotides; RNA, Transfer; Uridine | 1976 |
Structural domains of transfer RNA molecules.
Topics: Anticodon; Hydrogen Bonding; Models, Molecular; Nucleic Acid Conformation; Phenylalanine; Protein Biosynthesis; RNA, Transfer; Saccharomyces cerevisiae; Structure-Activity Relationship; Uridine | 1976 |
5-methoxyuridine: a new minor constituent located in the first position of the anticodon of tRNAAla, tRNAThr, and tRNAVal from Bacillus subtilis.
Topics: Alanine; Anticodon; Bacillus subtilis; Base Sequence; RNA, Bacterial; RNA, Transfer; Threonine; Uridine; Valine | 1976 |
Syntheses of potential antimetabolites. XX. Syntheses of 5-carbomethoxymethyl- and 5-methylaminomethyl-2-thiouridine (the "first letters" of some anticodons) and closely related nucleosides from uridine.
Topics: Anticodon; Methods; Thiouridine; Uridine | 1975 |
Nucleotide sequences of serine tRNAs from Bacillus subtilis.
Topics: Adenosine; Anticodon; Bacillus subtilis; Base Composition; Base Sequence; Molecular Sequence Data; Nucleic Acid Conformation; RNA, Bacterial; RNA, Transfer, Ser; Uridine | 1992 |
Presence and coding properties of 2'-O-methyl-5-carbamoylmethyluridine (ncm5Um) in the wobble position of the anticodon of tRNA(Leu) (U*AA) from brewer's yeast.
Topics: Anticodon; Chromatography, High Pressure Liquid; Fungal Proteins; Mass Spectrometry; Molecular Structure; RNA, Fungal; RNA, Transfer, Leu; Saccharomyces cerevisiae; Spectrophotometry, Ultraviolet; Uridine | 1992 |
Assignment of the magnetic resonances of the imino protons and methyl protons of Bombyx mori tRNA(GlyGCC) and the effect of ion binding on its structure.
Topics: Animals; Anticodon; Base Composition; Base Sequence; Bombyx; Codon; Hydrogen Bonding; Magnesium; Magnetic Resonance Spectroscopy; Molecular Sequence Data; Nucleic Acid Conformation; RNA, Transfer, Gly; RNA, Transfer, Phe; Saccharomyces cerevisiae; Spermine; Uridine | 1992 |
Four sites in the acceptor helix and one site in the variable pocket of tRNA(Ala) determine the molecule's acceptor identity.
Topics: Anticodon; Base Sequence; Binding Sites; Escherichia coli; Genes, Bacterial; Guanosine; Models, Structural; Molecular Sequence Data; Mutagenesis, Site-Directed; Nucleic Acid Conformation; RNA, Transfer, Ala; Uridine | 1991 |
5-[[(carboxymethyl)amino]methyl]uridine is found in the anticodon of yeast mitochondrial tRNAs recognizing two-codon families ending in a purine.
Topics: Anticodon; Chromatography, High Pressure Liquid; Mass Spectrometry; Mitochondria; Molecular Structure; Purines; RNA, Transfer; RNA, Transfer, Amino Acid-Specific; RNA, Transfer, Leu; RNA, Transfer, Trp; Saccharomyces cerevisiae; Spectrophotometry, Ultraviolet; Uridine | 1990 |
Eukaryotic tRNAs(Pro): primary structure of the anticodon loop; presence of 5-carbamoylmethyluridine or inosine as the first nucleoside of the anticodon.
Topics: Animals; Anticodon; Base Sequence; Cattle; Chickens; Chromatography; Inosine; Molecular Sequence Data; Molecular Structure; Nucleic Acid Conformation; RNA, Fungal; RNA, Transfer; RNA, Transfer, Amino Acid-Specific; RNA, Transfer, Pro; Spectrophotometry, Ultraviolet; Uridine; Yeasts | 1990 |
Pleiotropic effects induced by modification deficiency next to the anticodon of tRNA from Salmonella typhimurium LT2.
Topics: Anticodon; Chromatography, Thin Layer; DNA, Bacterial; Mutation; Protein Biosynthesis; Protein Sorting Signals; RNA, Bacterial; RNA, Transfer; RNA, Transfer, Amino Acyl; Salmonella typhimurium; Suppression, Genetic; Uridine | 1986 |
Pseudouridine modification in the tRNA(Tyr) anticodon is dependent on the presence, but independent of the size and sequence, of the intron in eucaryotic tRNA(Tyr) genes.
Topics: Animals; Anticodon; Base Sequence; Drosophila melanogaster; Female; Genes; Introns; Molecular Sequence Data; Mutation; Oocytes; Pseudouridine; RNA, Transfer; RNA, Transfer, Amino Acid-Specific; RNA, Transfer, Tyr; Uridine; Xenopus laevis | 1988 |
Chemical structure of a new modified nucleoside located in the anticodon of Bombyx mori glycine tRNA2.
Topics: Animals; Anticodon; Bombyx; Chromatography, Thin Layer; Exoribonucleases; Guanosine; Magnetic Resonance Spectroscopy; Mass Spectrometry; Optical Rotatory Dispersion; RNA, Transfer; RNA, Transfer, Amino Acid-Specific; RNA, Transfer, Gly; Spectrophotometry, Ultraviolet; Uridine | 1988 |
Identification of a modified nucleoside located in the first position of the anticodon of Torulopsis utilis tRNAPro as 5-carbamoylmethyluridine.
Topics: Anticodon; Candida; Chromatography; RNA, Fungal; RNA, Transfer; RNA, Transfer, Amino Acyl; Spectrum Analysis; Uridine | 1986 |
Molecular mechanism of codon recognition by tRNA species with modified uridine in the first position of the anticodon.
Topics: Anticodon; Codon; Hydrogen Bonding; Magnetic Resonance Spectroscopy; Nucleic Acid Conformation; RNA, Messenger; RNA, Transfer; Structure-Activity Relationship; Uridine | 1985 |
Modified nucleoside, 5-carbamoylmethyluridine, located in the first position of the anticodon of yeast valine tRNA.
Topics: Anticodon; Magnetic Resonance Spectroscopy; Mass Spectrometry; RNA, Fungal; RNA, Transfer; RNA, Transfer, Amino Acyl; Saccharomyces cerevisiae; Spectrophotometry, Ultraviolet; Uridine | 1985 |
A selenium-containing nucleoside at the first position of the anticodon in seleno-tRNAGlu from Clostridium sticklandii.
Topics: Anticodon; Base Sequence; Clostridium; Cyanogen Bromide; Oligonucleotides; Organoselenium Compounds; Ribonuclease T1; RNA, Transfer; RNA, Transfer, Amino Acyl; Selenium; Uridine | 1985 |
Crystal and molecular structure of the methyl ester of uridin-5-oxyacetic acid: a minor constituent of Escherichia coli tRNAs.
Topics: Acetates; Anticodon; Crystallography; Escherichia coli; Keto Acids; Models, Molecular; Molecular Conformation; Molecular Weight; RNA, Bacterial; RNA, Transfer; Uridine; X-Ray Diffraction | 1974 |
Novel features in the genetic code and codon reading patterns in Neurospora crassa mitochondria based on sequences of six mitochondrial tRNAs.
Topics: Anticodon; Base Sequence; Codon; DNA, Mitochondrial; Genetic Code; Mitochondria; Neurospora; Neurospora crassa; Nucleic Acid Conformation; RNA, Transfer; Uridine | 1980 |
A modified nucleoside located in the anticodon of proline tRNA from Torulopsis utilis is 5-carbamoylmethyluridine.
Topics: Anticodon; Candida; Magnetic Resonance Spectroscopy; Mass Spectrometry; Proline; RNA, Transfer; Spectrophotometry, Ultraviolet; Uridine | 1983 |
A mammalian mitochondrial serine transfer RNA lacking the "dihydrouridine" loop and stem.
Topics: Animals; Anticodon; Base Sequence; Cattle; Cloning, Molecular; DNA, Recombinant; Humans; Mitochondria, Liver; Nucleic Acid Conformation; Plasmids; RNA, Transfer, Amino Acyl; Species Specificity; Uridine | 1980 |
Role of exposed cytosine residues in aminoacylation activity of tRNATrp.
Topics: Animals; Anticodon; Base Sequence; Cattle; Cytosine; Nucleic Acid Conformation; RNA, Transfer, Amino Acyl; Structure-Activity Relationship; Sulfites; Tryptophan; Tryptophan-tRNA Ligase; Uridine | 1981 |
Different pattern of codon recognition by mammalian mitochondrial tRNAs.
Topics: Animals; Anticodon; Base Sequence; Biological Evolution; Cattle; Codon; Computers; DNA, Mitochondrial; Genetic Code; Humans; Mammals; Mitochondria; RNA, Messenger; RNA, Transfer; Uridine | 1980 |
Role of the constant uridine in binding of yeast tRNAPhe anticodon arm to 30S ribosomes.
Topics: Anticodon; Kinetics; Oligoribonucleotides; Ribosomes; RNA Ligase (ATP); RNA, Transfer; RNA, Transfer, Amino Acyl; Saccharomyces cerevisiae; Structure-Activity Relationship; T-Phages; Uridine | 1982 |
Translation of synonymous codons in family boxes by Mycoplasma capricolum tRNAs with unmodified uridine or adenosine at the first anticodon position.
Topics: Adenosine; Amino Acid Sequence; Anticodon; Base Sequence; Codon; Molecular Sequence Data; Mycoplasma; Protein Biosynthesis; RNA, Fungal; RNA, Transfer; Uridine | 1995 |
A modified uridine in the first position of the anticodon of a minor species of arginine tRNA, the argU gene product, from Escherichia coli.
Topics: Anticodon; Chromatography, High Pressure Liquid; Escherichia coli; Magnetic Resonance Spectroscopy; Nucleic Acid Conformation; RNA, Bacterial; RNA, Transfer, Arg; Uridine | 1993 |
Base modification pattern at the wobble position of Xenopus selenocysteine tRNA(Sec).
Topics: Animals; Anticodon; Base Composition; Base Sequence; Microinjections; Molecular Sequence Data; Mutagenesis; Nucleic Acid Conformation; RNA, Transfer, Amino Acid-Specific; Selenocysteine; Uridine; Xenopus laevis | 1994 |
NMR studies of the effects of the 5'-phosphate group on conformational properties of 5-methylaminomethyluridine found in the first position of the anticodon of Escherichia coli tRNA(Arg)4.
Topics: Anticodon; Computer Graphics; Escherichia coli; Magnetic Resonance Spectroscopy; Models, Molecular; Nucleic Acid Conformation; Ribose; RNA, Transfer, Arg; Thermodynamics; Uridine | 1996 |
Codon recognition by tRNA molecules with a modified or unmodified uridine at the first position of the anticodon.
Topics: Anticodon; Codon; Escherichia coli; Molecular Structure; Nucleic Acid Conformation; RNA, Transfer; RNA, Transfer, Ser; Uridine | 1995 |
RNA hydration: three nanoseconds of multiple molecular dynamics simulations of the solvated tRNA(Asp) anticodon hairpin.
Topics: Anticodon; Base Composition; Computer Simulation; Guanine; Hydrogen Bonding; Models, Molecular; Nucleic Acid Conformation; Ribose; RNA, Transfer, Asp; Uridine; Water | 1997 |
Modified nucleosides in the first positions of the anticodons of tRNA(Leu)4 and tRNA(Leu)5 from Escherichia coli.
Topics: Anticodon; Base Sequence; Codon; Escherichia coli; Hydrogen-Ion Concentration; Magnetic Resonance Spectroscopy; Mass Spectrometry; Molecular Sequence Data; Nucleoside Q; Protons; Pyrimidine Nucleosides; Ribose; RNA, Transfer, Leu; Spectrophotometry, Ultraviolet; Uridine | 1999 |
The uridine in "U-turn": contributions to tRNA-ribosomal binding.
Topics: Anticodon; Humans; Models, Molecular; Molecular Structure; Nucleic Acid Conformation; Nucleic Acid Denaturation; Ribosomes; RNA, Fungal; RNA, Transfer, Phe; Temperature; Uridine | 1999 |
A single uridine modification at the wobble position of an artificial tRNA enhances wobbling in an Escherichia coli cell-free translation system.
Topics: Amino Acid Sequence; Anticodon; Base Sequence; Cell-Free System; Codon; Escherichia coli; Models, Genetic; Molecular Sequence Data; Nucleic Acid Conformation; Protein Biosynthesis; RNA, Transfer, Ser; Uridine | 1999 |
A distinctive RNA fold: the solution structure of an analogue of the yeast tRNAPhe T Psi C domain.
Topics: Anticodon; Base Sequence; Crystallography, X-Ray; Models, Molecular; Molecular Sequence Data; Nuclear Magnetic Resonance, Biomolecular; Nucleic Acid Conformation; Pseudouridine; RNA, Fungal; RNA, Transfer, Phe; Saccharomyces cerevisiae; Solutions; Uridine | 1999 |
Structural and functional roles of the N1- and N3-protons of psi at tRNA's position 39.
Topics: Anticodon; Genes, Fungal; Magnetic Resonance Spectroscopy; Nucleic Acid Conformation; Protons; Pseudouridine; Ribosomes; RNA, Ribosomal, 16S; RNA, Transfer, Phe; Structure-Activity Relationship; Temperature; Thermodynamics; Uridine; Yeasts | 1999 |
The structural basis for tRNA recognition and pseudouridine formation by pseudouridine synthase I.
Topics: Amino Acid Sequence; Anticodon; Aspartic Acid; Binding Sites; Conserved Sequence; Crystallization; Crystallography, X-Ray; Dimerization; Escherichia coli; Hydro-Lyases; Hydrogen Bonding; Models, Molecular; Molecular Sequence Data; Protein Structure, Secondary; Protein Structure, Tertiary; Pseudouridine; RNA-Binding Proteins; RNA, Transfer; Substrate Specificity; Uridine | 2000 |
Defect in modification at the anticodon wobble nucleotide of mitochondrial tRNA(Lys) with the MERRF encephalomyopathy pathogenic mutation.
Topics: Anticodon; Cell Line; HeLa Cells; Humans; MELAS Syndrome; MERRF Syndrome; Mitochondria; Mitochondrial Myopathies; Mutation; Point Mutation; RNA, Transfer, Leu; RNA, Transfer, Lys; Uridine | 2000 |
NMR studies of Bacillus subtilis tRNA(Trp) hyperexpressed in Escherichia coli. Assignment of imino proton signals and determination of thermal stability.
Topics: Anticodon; Bacillus subtilis; Base Pairing; Escherichia coli; Magnetic Resonance Spectroscopy; RNA, Transfer, Trp; Temperature; Uridine | 2000 |
Synthesis and properties of uniquely modified oligoribonucleotides: yeast tRNA(Phe) fragments with 6-methyluridine and 5,6-dimethyluridine at site-specific positions.
Topics: Anticodon; Magnetic Resonance Spectroscopy; Methylation; Molecular Conformation; Oligoribonucleotides; Organophosphorus Compounds; RNA, Transfer, Phe; Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization; Uridine; Yeasts | 2000 |
Hypermodified nucleosides in the anticodon of tRNALys stabilize a canonical U-turn structure.
Topics: Anticodon; Circular Dichroism; Escherichia coli; Humans; Models, Molecular; Nuclear Magnetic Resonance, Biomolecular; Nucleic Acid Conformation; Nucleosides; Phosphorus Isotopes; Protons; RNA, Bacterial; RNA, Fungal; RNA, Transfer, Lys; Saccharomyces cerevisiae; Spectrophotometry, Ultraviolet; Structure-Activity Relationship; Sulfur; Thermodynamics; Uridine | 2000 |
Modified nucleoside dependent Watson-Crick and wobble codon binding by tRNALysUUU species.
Topics: Adenosine; Anticodon; Binding Sites; Humans; Nucleic Acid Conformation; Protein Binding; Pseudouridine; Ribosomal Proteins; RNA, Ribosomal, 16S; RNA, Transfer, Lys; Structure-Activity Relationship; Thermodynamics; Uridine | 2000 |
An extended structural signature for the tRNA anticodon loop.
Topics: Anticodon; Hydrogen Bonding; Models, Chemical; Models, Molecular; Phylogeny; Purines; Pyrimidines; Sequence Analysis, RNA; Uridine | 2001 |
Modification of the universally unmodified uridine-33 in a mitochondria-imported edited tRNA and the role of the anticodon arm structure on editing efficiency.
Topics: Anticodon; Base Sequence; Chromatography, Liquid; Mitochondria; Molecular Sequence Data; Nucleic Acid Conformation; RNA Editing; RNA, Transfer, Trp; Spectrometry, Mass, Electrospray Ionization; Sulfhydryl Compounds; Uridine | 2002 |
Taurine as a constituent of mitochondrial tRNAs: new insights into the functions of taurine and human mitochondrial diseases.
Topics: Anticodon; Humans; Mass Spectrometry; Mitochondria; Mitochondrial Diseases; RNA, Transfer; Sequence Analysis, RNA; Taurine; Uridine | 2002 |
Decoding property of C5 uridine modification at the wobble position of tRNA anticodon.
Topics: Amino Acid Sequence; Anticodon; Base Sequence; Cell-Free System; Escherichia coli; Protein Biosynthesis; RNA, Transfer; Uridine | 2003 |
Roles of 5-substituents of tRNA wobble uridines in the recognition of purine-ending codons.
Topics: Anticodon; Codon; Models, Genetic; Protein Biosynthesis; Purine Nucleotides; RNA, Transfer; Thermodynamics; Uridine | 2003 |
Quick two-step RNA ligation employing periodate oxidation.
Topics: Anticodon; Base Sequence; Mass Spectrometry; Molecular Sequence Data; Nucleic Acid Conformation; Oxidation-Reduction; Periodic Acid; RNA; RNA, Transfer, Leu; Uridine | 2003 |
A cluster of metabolic defects caused by mutation in a mitochondrial tRNA.
Topics: Adult; Aging; Anticodon; Body Mass Index; Cluster Analysis; Cytidine; Extrachromosomal Inheritance; Female; Humans; Hypercholesterolemia; Hypertension; Magnesium; Male; Metabolic Syndrome; Middle Aged; Mitochondria; Mitochondria, Muscle; Muscle Fibers, Skeletal; Mutation; Pedigree; Phenotype; RNA; RNA, Mitochondrial; RNA, Transfer, Ile; Syndrome; Thymidine; Uridine | 2004 |
Acquisition of the wobble modification in mitochondrial tRNALeu(CUN) bearing the G12300A mutation suppresses the MELAS molecular defect.
Topics: Adenosine; Anticodon; Base Sequence; Cell Line, Tumor; Guanosine; Humans; MELAS Syndrome; Molecular Sequence Data; Nucleic Acid Conformation; Point Mutation; RNA; RNA, Mitochondrial; RNA, Transfer, Leu; Suppression, Genetic; Uridine | 2006 |
Molecular dynamics simulations of human tRNA Lys,3 UUU: the role of modified bases in mRNA recognition.
Topics: Adenosine; Anticodon; Base Pairing; Computer Simulation; Humans; Models, Molecular; Nucleic Acid Conformation; Pseudouridine; RNA, Messenger; RNA, Transfer, Lys; Thiouridine; Threonine; Uridine | 2006 |
Elevated levels of two tRNA species bypass the requirement for elongator complex in transcription and exocytosis.
Topics: Anticodon; Chromatin Assembly and Disassembly; Exocytosis; Gene Dosage; Mutation; Peptide Elongation Factors; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins; Temperature; Transcription, Genetic; Uridine | 2006 |
Possible conformations of 5-aminomethyluridine derivatives recognizing a G at the third position of the codon.
Topics: Anticodon; Base Pairing; Codon; Guanine; Models, Molecular; Nucleic Acid Conformation; Uridine | 2005 |
Mechanism for expanding the decoding capacity of transfer RNAs by modification of uridines.
Topics: Amino Acid Sequence; Anticodon; Base Pairing; Base Sequence; Codon; Crystallography; Models, Molecular; Molecular Sequence Data; Molecular Structure; RNA, Transfer, Val; Uridine | 2007 |
E. coli glutamyl-tRNA synthetase is inhibited by anticodon stem-loop domains and a minihelix.
Topics: Anticodon; Base Sequence; Binding Sites; Enzyme Inhibitors; Escherichia coli; Escherichia coli Proteins; Glutamate-tRNA Ligase; Molecular Sequence Data; Nucleic Acid Conformation; RNA, Transfer; Thermodynamics; Transfer RNA Aminoacylation; Uridine | 2007 |
Eukaryotic wobble uridine modifications promote a functionally redundant decoding system.
Topics: Anticodon; Base Sequence; Codon; Genes, Fungal; Plasmids; Protein Biosynthesis; RNA, Fungal; RNA, Transfer; Saccharomyces cerevisiae; Transfer RNA Aminoacylation; Uridine | 2008 |
Modified uridines with C5-methylene substituents at the first position of the tRNA anticodon stabilize U.G wobble pairing during decoding.
Topics: Animals; Anticodon; Base Pairing; Crystallography, X-Ray; Escherichia coli K12; Mitochondria; Nucleic Acid Conformation; Ribosomes; RNA, Transfer, Arg; Uridine | 2008 |
tRNA and protein methylase complexes mediate zymocin toxicity in yeast.
Topics: Anticodon; Drug Resistance, Fungal; Gene Expression Regulation, Fungal; Killer Factors, Yeast; Kluyveromyces; Mutation; Mycotoxins; Peptide Termination Factors; RNA, Transfer; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins; Suppression, Genetic; tRNA Methyltransferases; Uridine | 2008 |
Conserved cysteine residues of GidA are essential for biogenesis of 5-carboxymethylaminomethyluridine at tRNA anticodon.
Topics: Amino Acid Sequence; Anticodon; Bacteria; Bacterial Proteins; Binding Sites; Catalytic Domain; Conserved Sequence; Cysteine; Flavin-Adenine Dinucleotide; Molecular Sequence Data; RNA, Transfer; Uridine | 2009 |
The AlkB domain of mammalian ABH8 catalyzes hydroxylation of 5-methoxycarbonylmethyluridine at the wobble position of tRNA.
Topics: AlkB Homolog 8, tRNA Methyltransferase; Anticodon; Base Sequence; Catalysis; DNA Repair; Humans; Hydroxylation; Methylation; Protein Structure, Tertiary; RNA, Transfer; tRNA Methyltransferases; Uridine | 2010 |
Taurine-containing uridine modifications in tRNA anticodons are required to decipher non-universal genetic codes in ascidian mitochondria.
Topics: Animals; Anticodon; Mitochondria; RNA; RNA, Mitochondrial; Taurine; Uridine; Urochordata | 2011 |
The tRNA recognition mechanism of folate/FAD-dependent tRNA methyltransferase (TrmFO).
Topics: Anticodon; Bacterial Proteins; Base Sequence; Electrophoretic Mobility Shift Assay; Enzyme Assays; Flavin-Adenine Dinucleotide; Folic Acid; Gene Expression Regulation, Bacterial; Glycine; Glycine Hydroxymethyltransferase; Kinetics; Models, Biological; Molecular Sequence Data; Mutation; Nucleic Acid Conformation; RNA, Messenger; RNA, Transfer; RNA, Transfer, Phe; Serine; Substrate Specificity; Thermus thermophilus; tRNA Methyltransferases; Uridine | 2012 |
The contributions of wobbling and superwobbling to the reading of the genetic code.
Topics: Anticodon; Base Pairing; Codon; Gene Knockout Techniques; Genetic Code; Genome, Plastid; Hydrogen Bonding; Mutation; Nicotiana; RNA, Transfer; Uridine | 2012 |
Desulfuration of 2-thiouridine with hydrogen peroxide in the physiological pH range 6.6-7.6 is pH-dependent and results in two distinct products.
Topics: Anticodon; Hydrogen Peroxide; Hydrogen-Ion Concentration; Magnetic Resonance Spectroscopy; RNA, Transfer; Sulfur; Thiouridine; Uridine | 2013 |
Identification and codon reading properties of 5-cyanomethyl uridine, a new modified nucleoside found in the anticodon wobble position of mutant haloarchaeal isoleucine tRNAs.
Topics: Anticodon; Base Pairing; Base Sequence; Codon; Escherichia coli; Haloarcula marismortui; Haloferax; Molecular Structure; Point Mutation; Ribosomes; RNA, Archaeal; RNA, Bacterial; RNA, Fungal; RNA, Transfer, Ile; Saccharomyces cerevisiae; Sulfolobus; Transfer RNA Aminoacylation; Uridine | 2014 |
Conformational Preferences of Modified Nucleoside 5-Taurinomethyluridine, τm(5)U Occur at 'wobble' 34th Position in the Anticodon Loop of tRNA.
Topics: Anticodon; Escherichia coli; Hydrogen Bonding; Molecular Conformation; Molecular Dynamics Simulation; Static Electricity; Uridine | 2015 |
The role of wobble uridine modifications in +1 translational frameshifting in eukaryotes.
Topics: Anticodon; Frameshifting, Ribosomal; RNA, Fungal; RNA, Transfer; Saccharomyces cerevisiae; Thiouridine; Uridine | 2015 |
Biogenesis and growth phase-dependent alteration of 5-methoxycarbonylmethoxyuridine in tRNA anticodons.
Topics: Amino Acid Sequence; Anticodon; Base Pairing; Codon; Escherichia coli; Gammaproteobacteria; Gene Expression Regulation, Bacterial; Genetic Code; Models, Molecular; Molecular Sequence Data; Nucleic Acid Conformation; Ribosomes; RNA, Bacterial; RNA, Transfer; Sequence Alignment; Uridine | 2016 |
Idiosyncratic recognition of UUG/UUA codons by modified nucleoside 5-taurinomethyluridine, τm5U present at 'wobble' position in anticodon loop of tRNALeu: A molecular modeling approach.
Topics: Animals; Anticodon; Codon; Humans; Hydrogen Bonding; Molecular Dynamics Simulation; Protein Biosynthesis; RNA; RNA, Mitochondrial; RNA, Ribosomal; RNA, Transfer, Leu; Uridine | 2017 |
Selective terminal methylation of a tRNA wobble base.
Topics: Anticodon; Base Sequence; Codon; Escherichia coli; Methylation; Nucleic Acid Conformation; RNA, Bacterial; RNA, Transfer; RNA, Transfer, Pro; Uridine | 2018 |
Codon-specific effects of tRNA anticodon loop modifications on translational misreading errors in the yeast Saccharomyces cerevisiae.
Topics: Anticodon; Codon; Genetic Code; Glutamine; Protein Biosynthesis; Protein Processing, Post-Translational; RNA Processing, Post-Transcriptional; RNA, Transfer; Saccharomyces cerevisiae; Uridine | 2018 |
Kti12, a PSTK-like tRNA dependent ATPase essential for tRNA modification by Elongator.
Topics: Adaptor Proteins, Signal Transducing; Adenosine Triphosphatases; Anticodon; Carrier Proteins; Chaetomium; Crystallography, X-Ray; Protein Conformation; Ribosomes; RNA Processing, Post-Transcriptional; RNA, Transfer; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins; Uridine | 2019 |
Absolute requirement for polyamines for growth of Escherichia coli mutants (mnmE/G) defective in modification of the wobble anticodon of transfer-RNA.
Topics: Anticodon; Escherichia coli; Escherichia coli Proteins; GTP Phosphohydrolases; Mutation; One-Carbon Group Transferases; Polyamines; Protein Biosynthesis; RNA, Transfer; Transfer RNA Aminoacylation; Uridine | 2019 |
Eukaryotic life without tQCUG: the role of Elongator-dependent tRNA modifications in Dictyostelium discoideum.
Topics: Anticodon; Codon; Dictyostelium; Gene Deletion; Glutamine; Histone Acetyltransferases; Mutation; Nucleosides; Phylogeny; Protein Biosynthesis; Protozoan Proteins; RNA, Transfer; Uridine | 2020 |
Substrate recognition mechanism of tRNA-targeting ribonuclease, colicin D, and an insight into tRNA cleavage-mediated translation impairment.
Topics: Anticodon; Bacteriocins; Base Pairing; Binding Sites; Colicins; Escherichia coli; Gene Expression Regulation, Bacterial; Molecular Docking Simulation; Nucleic Acid Conformation; Peptide Elongation Factor Tu; Plasmids; Protein Binding; Protein Biosynthesis; Protein Conformation, alpha-Helical; Protein Conformation, beta-Strand; Protein Interaction Domains and Motifs; Ribosomes; RNA, Bacterial; RNA, Transfer, Arg; Substrate Specificity; Thiouridine; Uridine | 2021 |
The uridine to pseudouridine modification at the wobble position of eukaryotic isoleucine tRNA species is unlikely to induce mistranslation.
Topics: Anticodon; Eukaryota; Isoleucine; Pseudouridine; Uridine | 2022 |
Structural basis for the selective methylation of 5-carboxymethoxyuridine in tRNA modification.
Topics: Anticodon; Escherichia coli; Gram-Negative Bacteria; Gram-Positive Bacteria; Methylation; Nucleic Acid Conformation; RNA, Transfer; Uridine | 2023 |