tryptophan and adenosine diphosphate

tryptophan has been researched along with adenosine diphosphate in 139 studies

Research

Studies (139)

TimeframeStudies, this research(%)All Research%
pre-199017 (12.23)18.7374
1990's50 (35.97)18.2507
2000's70 (50.36)29.6817
2010's2 (1.44)24.3611
2020's0 (0.00)2.80

Authors

AuthorsStudies
Yoshino, H1
Kägi, JH; Mertens, ML; Nagayama, K; Vasák, M; Wüthrich, K1
Atkins, WM; Villafranca, JJ1
Hiratsuka, T1
France, RM; Grossman, SH; Mattheis, JR1
Aviram, M; Cogan, U; Mokady, S1
Deléage, G; Di Pietro, A; Divita, G; Gautheron, DC; Roux, B1
Harwalkar, VA; Stein, LA1
Brochon, JC; Desmadril, M; Mouawad, L; Perahia, D; Yon, JM1
Horowitz, PM; Mann, CJ; Mitchell, T; Nishimura, JS; Ybarra, J1
Nakatsuka, M; Nomura, J; Ohta, T; Satoh, K; Shibata, Y; Tanaka, T1
Cioni, P; Strambini, GB1
Arata, T; Inoue, A; Osafune, M; Tanii, I1
Steinberg, M; Tyson, PA1
Bagshaw, CR; Warriner, KE; Wells, C1
Bobyleva-Guarriero, V; Lardy, HA; Wehbie, RS1
Fasman, GD; Szent-Györgyi, AG; Werber, MM2
Jörnvall, H; Koberstein, R; Noack, K; Rasched, I; Sund, H; Witzemann, V1
Högenauer, G1
Hashimoto, T; Miyazawa, S; Sakurai, T; Shindo, Y1
Buckingham, S; Maurer, HM; Spielvogel, AR; Wolff, JA1
Kuczenski, RT; Suelter, CH1
Costa-Tiozzo, R; Gál, EM1
Vekshin, NL1
Buchberger, A; Bukau, B; McCarty, JS; Milkereit, P; Reinstein, J; Schröder, H; Theyssen, H; Virgallita, G1
Auzat, I; Garel, JR; Gawlita, E1
Blanchoin, L; Carlier, MF; Didry, D; Marchand, JB; Perelroizen, I1
Johnson, JL; Reinhart, GD2
Bryant, FR; Stole, E1
Grell, E; Senior, AE; Weber, J; Wilke-Mounts, S1
Divita, G; Elalaoui, A; Goody, RS; Imbach, JL; Maury, G1
Chatterjee, IB; Mukhopadhyay, CK1
Grell, E; Lee, RS; Senior, AE; Weber, J; Wilke-Mounts, S1
Di Pietro, A; Divita, G; Guillot, D; Reboud, AM; Reboud, JP; Sontag, B1
Cardemil, E; Encinas, MV; Goldie, H; Rojas, MC1
Brindle, KM; Fulton, AM; Williams, SP1
Di Pietro, A; Divita, G; Gautheron, DC; Goody, RS1
Mann, CJ; Mitchell, T; Nishimura, JS; Ybarra, J1
Kim, E; Motoki, M; Muhlrad, A; Reisler, E; Seguro, K1
Bobkova, E; Botstein, D; Doyle, TC; Miller, CJ; Reisler, E1
Bowman, C; Senior, AE; Weber, J1
Goody, RS; Simon, I; Zerial, M1
Cheung, CW; Mas, MT1
de Wit, JG; den Blaauwen, T; Driessen, AJ; Fekkes, P; Kuiper, W1
Branlant, G; Gabellieri, E; Rahuel-Clermont, S; Strambini, GB1
Gibbons, DL; Gorovits, BM; Hay, N; Hixson, JD; Horowitz, PM; Lund, P; Ybarra, J1
Bukau, B; Packschies, L; Reinstein, J; Schuster, HP; Theyssen, H1
Brandolin, G; Dianoux, AC; Fiore, C; Lauquin, GJ; Le Saux, A; Roux, P; Schwimmer, C; Trézéguet, V; Vignais, PV1
Ajtai, K; Burghardt, TP; Park, S2
Rosen, BP; Zhou, T1
Boam, DJ; Coggins, JR; Idziak, C; Kelly, SM; Krell, T; Lapthorn, AJ; Price, NC1
Slepenkov, SV; Witt, SN1
Löbau, S; Senior, AE; Weber, J1
Senior, AE; Weber, J1
Morii, H; Shimizu, T1
Allison, WS; Dou, C; Fortes, PA1
Kasturi, SR; Maity, H1
Nadanaciva, S; Senior, AE; Weber, J2
Isaev-Ivanov, VV; Lantsov, VA1
Burston, SG; Clarke, AR; Cliff, MJ; Hay, N; Kad, NM; Lund, PA; Webb, MR1
Berger, CL; Chrin, L; Rovner, AS; Yengo, CM1
Nadanaciva, S; Senior, AE; Weber, J; Wilke-Mounts, S1
De La Cruz, EM; Ostap, EM; Rosenfeld, SS; Sweeney, HL; Wells, AL1
Gimi, K; Gros, P; Lerner-Marmarosh, N; Senior, AE; Urbatsch, IL1
Deutscher, J; Di Pietro, A; Fieulaine, S; Galinier, A; Gonzalo, P; Jault, JM; Nessler, S1
Jang, SB; Peters, JW; Seefeldt, LC1
Digits, JA; Hedstrom, L1
Baitin, DM; Isaev-Ivanov, VV; Kozlov, MG; Kuramitsu, S; Lanzov, VA; Masui, R1
Andersen, J; Champagne, D; Francischetti, IM; Ribeiro, JM1
Cheung, HC; Jefferson, GM; Rosenfeld, SS; Stein, R; Wriggers, W; Xing, J1
Buchet, R; Hagemann, H; Marcillat, O; Vial, C1
Fujiwara, K; Hayakawa, K; Konishi, K; Martinez, HM; Morales, MF; Onishi, H; Tanokura, M1
Joel, PB; Sweeney, HL; Trybus, KM1
Estes, JE; Gershman, LC; Kinosian, HJ; Selden, LA1
De La Cruz, EM; Ostap, EM; Sweeney, HL; Wells, AL1
Bagshaw, CR; Málnási-Csizmadia, A; Woolley, RJ1
Reinhart, GD; Riley-Lovingshimer, MR2
Bagshaw, CR; Botchway, SW; Kovacs, M; Malnasi-Csizmadia, A; Woolley, RJ1
Ajtai, K; Burghardt, TP; Muhlrad, A; Peyser, YM1
Allison, WS; Dong, K; Ren, H1
Burghardt, TP; Park, S1
Geeves, MA; Nyitrai, M; Szent-Györgyi, AG1
Chu, JW; Qu, Q; Sharom, FJ1
Biswas, EE; Biswas, SB; Flowers, S1
Cardemil, E; Espinosa, V; Kettlun, AM; Valenzuela, MA; Zanocco, A1
Goldman, YE; Ostap, EM; Shaw, MA1
Ito, K; Sutoh, K; Suzuki, Y; Uyeda, TQ; Yamamoto, K1
Horii, T; Sekiguchi, M; Takahashi, M; Yamazaki, J1
Galinier, A; Granet, Y; Grangeasse, C; Jault, JM; Lavergne, JP; Nessler, S; Pompeo, F1
Li, CC; Song, C; Wang, Q; Yang, X1
Iizuka, R; Maruyama, T; Miki, K; Odaka, M; Shomura, Y; Yohda, M; Yoshida, T1
Bagshaw, CR; Conibear, PB; Floyd, DN; Kovács, M; Málnási-Csizmadia, A; Wakelin, S; Woolley, RJ1
Duffieux, F; Jacquet, E; Lallemand, JY; Masscheleyn, S; Oberkampf, M; Pamlard, O; Ramaen, O; Stoven, V1
Ding, H; Mukerji, I; Oliver, D1
Krishnamurthy, G; Smith, D; Tawa, G; Wang, Y; Young, KH1
Daiho, T; Danko, S; Suzuki, H; Yamasaki, K1
Campbell, ID; Clarkson, J; Harris, DA; Shu, JC; Yudkin, MD1
Tapley, TL; Vickery, LE1
Belknap, B; Ikebe, M; Ikebe, R; Inoue, A; Sato, O; White, HD1
Hayaishi, O1
Bryan, KE; Rubenstein, PA1
Barman, T; Candau, R; Iorga, B; Lionne, C; Travers, F1
Bagshaw, CR; Conibear, PB; Málnási-Csizmadia, A1
Corvest, V; Falson, P; Haraux, F; Mueller, DM; Sigalat, C; Venard, R1
Jang, SB; Jeong, MS1
Bujalowski, W; Jezewska, MJ; Lucius, AL1
Flachner, B; Gráczer, E; Osváth, S; Szilágyi, AN; Varga, A; Vas, M1
Berger, CL; Chrin, LR; Gaffney, DP; Robertson, CI1
Catalano, CE; Gaussier, H; Maluf, NK; Ortega, ME1
Benabdelhak, H; Holland, IB; Jenewein, S; Schmitt, L; Wiedenmann, A; Zaitseva, J1
Feng, Z; Qin, G; Xicheng, W1
Edamatsu, M; Mizuno, N; Morii, H; Ogawa, K; Shimizu, T; Shimizu, Y; Toyoshima, YY1
Kannan, N; Neuwald, AF1
Jefferson, GM; King, PH; Rosenfeld, SS; Xing, J1
Iizuka, R; Inobe, T; Ishii, N; Kuwajima, K; Maki, K; Takahashi, K; Yohda, M; Yoshida, T; Zako, T1
Bujalowski, W; Galletto, R; Jezewska, MJ; Maillard, R1
Bhattacharyya, D; Chakraborty, A; Datta, AK; Datta, R; Sen, B1
Bukau, B; Mayer, MP; Vogel, M1
Hiromasa, Y; Hu, L; Roche, TE1
Russell, PL; Sharom, FJ1
Bagshaw, CR; Geeves, MA; Gyimesi, M; Kintses, B; Málnási-Csizmadia, A; Pearson, DS; Zeng, W1
Bruckner, RC; Ferreira, P; Jorns, MS; Zhao, G1
Bulygin, VV; Milgrom, YM1
Jahn, W1
Herdendorf, TJ; Miziorko, HM1
Mao, HZ; Weber, J1
Hiromasa, Y; Roche, TE1
Leskovar, A; Reinstein, J1
Aittoniemi, J; Ashcroft, FM; de Wet, H; Flanagan, SE; Hattersley, AT; Lafond, M; Pearson, ER; Proks, P; Sansom, MS1
Conilleau, S; Iwai, S; Kurumizaka, H; Renodon-Cornière, A; Takahashi, M; Takizawa, Y; Tran, V1
Balakrishna, AM; Grüber, G; Hunke, C; Kumar, A; Manimekalai, MS; Sewald, N; Weigelt, S1
Herman, P; Lee, JC1
Levitsky, DI; Logvinova, DS; Markov, DI; Nikolaeva, OP; Sluchanko, NN; Ushakov, DS1
Gayathri, N; Keshava Prasad, TS; Kumar, M; Nalini, A; Padmanabhan, B; Srinivas Bharath, MM; Sunitha, B1

Reviews

1 review(s) available for tryptophan and adenosine diphosphate

ArticleYear
Engineering Dictyostelium discoideum myosin II for the introduction of site-specific fluorescence probes.
    Journal of muscle research and cell motility, 2002, Volume: 23, Issue:7-8

    Topics: Adenosine Diphosphate; Animals; Dictyostelium; Fluorescent Dyes; Genes, Reporter; Green Fluorescent Proteins; Kinetics; Luminescent Proteins; Myosin Type II; Protein Engineering; Protozoan Proteins; Tryptophan

2002

Other Studies

138 other study(ies) available for tryptophan and adenosine diphosphate

ArticleYear
The role of tryptophanyl residues in heavy meromyosin as studied by chemical modification with 2-hydroxy-5-nitrobenzyl bromide.
    Journal of biochemistry, 1976, Volume: 80, Issue:5

    Topics: 2-Hydroxy-5-nitrobenzyl Bromide; Adenosine Diphosphate; Adenosine Triphosphatases; Adenosine Triphosphate; Diphosphates; Macromolecular Substances; Magnesium; Manganese; Myosin Subfragments; Phosphates; Potassium Chloride; Protein Binding; Trypsin; Tryptophan

1976
Creatine kinase. Nuclear magnetic resonance and fluorescence evidence for interaction of adenosine 5'-diphosphate with aromatic residue(s).
    Biochemistry, 1979, Nov-13, Volume: 18, Issue:23

    Topics: Adenosine Diphosphate; Animals; Binding Sites; Creatine Kinase; Fourier Analysis; Kinetics; Magnetic Resonance Spectroscopy; Phenylalanine; Protein Binding; Protein Conformation; Rabbits; Spectrometry, Fluorescence; Tryptophan; Tyrosine

1979
Time-resolved fluorescence studies of tryptophan mutants of Escherichia coli glutamine synthetase: conformational analysis of intermediates and transition-state complexes.
    Protein science : a publication of the Protein Society, 1992, Volume: 1, Issue:3

    Topics: Adenosine Diphosphate; Adenosine Triphosphate; Escherichia coli; Glutamate-Ammonia Ligase; Hydrogen-Ion Concentration; Kinetics; Mutagenesis, Site-Directed; Quantum Theory; Recombinant Proteins; Spectrometry, Fluorescence; Time Factors; Tryptophan

1992
Spatial proximity of ATP-sensitive tryptophanyl residue(s) and Cys-697 in myosin ATPase.
    The Journal of biological chemistry, 1992, Jul-25, Volume: 267, Issue:21

    Topics: Adenosine Diphosphate; Adenosine Triphosphate; Anilino Naphthalenesulfonates; Animals; Cysteine; Myosins; Rabbits; Spectrometry, Fluorescence; Sulfhydryl Reagents; Tryptophan

1992
Heterogeneous flexibilities of the active site domains of homodimeric creatine kinase: effect of substrate.
    Biochimica et biophysica acta, 1992, Sep-04, Volume: 1159, Issue:1

    Topics: Adenosine Diphosphate; Animals; Binding Sites; Creatine; Creatine Kinase; In Vitro Techniques; Ligands; Motion; Muscles; Rabbits; Spectrometry, Fluorescence; Tryptophan

1992
Dietary tryptophan enhances platelet aggregation in rats.
    Journal of nutritional science and vitaminology, 1990, Volume: 36 Suppl 2

    Topics: Adenosine Diphosphate; Animals; Diet; Female; Hydroxyindoleacetic Acid; Lipids; Male; Platelet Aggregation; Rats; Serotonin; Tryptophan; Weaning

1990
Intrinsic tryptophan fluorescence of Schizosaccharomyces pombe mitochondrial F1-ATPase. A powerful probe for phosphate and nucleotide interactions.
    Biochemistry, 1991, Apr-02, Volume: 30, Issue:13

    Topics: Acrylamide; Acrylamides; Adenosine Diphosphate; Adenosine Triphosphate; Guanidine; Guanidines; Iodides; Macromolecular Substances; Mitochondria; Protein Conformation; Proton-Translocating ATPases; Schizosaccharomyces; Spectrometry, Fluorescence; Tryptophan

1991
Characterization of an actin flow artifact that occurs during the presteady state dissociation of actosubfragment-1.
    Archives of biochemistry and biophysics, 1991, Volume: 287, Issue:2

    Topics: Actins; Adenosine Diphosphate; Adenosine Triphosphate; Animals; False Positive Reactions; Fluorescence; Kinetics; Light; Myosins; Peptide Fragments; Phosphates; Rabbits; Scattering, Radiation; Swine; Tryptophan

1991
The effects of ligands on the conformation of phosphoglycerate kinase: fluorescence anisotropy decay and theoretical interpretation.
    Biopolymers, 1990, Volume: 30, Issue:13-14

    Topics: Adenosine Diphosphate; Animals; Birefringence; Fluorescence Polarization; Glyceric Acids; Glycolysis; Horses; Isomerism; Kinetics; Ligands; Macromolecular Substances; Phosphoglycerate Kinase; Protein Conformation; Spectrophotometry, Ultraviolet; Temperature; Tryptophan

1990
Intrinsic fluorescence of succinyl-CoA synthetase and four tryptophan mutants. Tryptophan 76 and tryptophan 248 of the beta-subunit are responsive to CoA binding.
    Biochemistry, 1990, Jan-30, Volume: 29, Issue:4

    Topics: Adenosine Diphosphate; Adenosine Triphosphate; Coenzyme A; Coenzyme A Ligases; Iodides; Mutation; Phenylalanine; Protein Binding; Spectrometry, Fluorescence; Succinate-CoA Ligases; Succinates; Tryptophan

1990
Effect of some purine metabolites contained in oyster on platelet aggregation.
    Advances in experimental medicine and biology, 1989, Volume: 253B

    Topics: Adenosine Diphosphate; Adult; Animals; Blood Glucose; Diabetes Mellitus, Experimental; Humans; Male; Nucleosides; Nucleotides; Ostreidae; Platelet Aggregation; Rats; Rats, Inbred Strains; Tissue Extracts; Tryptophan

1989
Dynamical structure of glutamate dehydrogenase as monitored by tryptophan phosphorescence. Signal transmission following binding of allosteric effectors.
    Journal of molecular biology, 1989, May-05, Volume: 207, Issue:1

    Topics: Adenosine Diphosphate; Allosteric Site; Animals; Cattle; Glutamate Dehydrogenase; Guanosine Triphosphate; Luminescent Measurements; Macromolecular Substances; Oxygen; Protein Conformation; Tryptophan

1989
ATPase characteristics of myosin from nematode Caenorhabditis elegans purified by an improved method. Formation of myosin-phosphate-ADP complex and ATP-induced fluorescence enhancement.
    Journal of biochemistry, 1985, Volume: 98, Issue:5

    Topics: Actins; Actomyosin; Adenosine Diphosphate; Adenosine Triphosphatases; Adenosine Triphosphate; Animals; Electrophoresis, Polyacrylamide Gel; Light; Myosins; Nematoda; Scattering, Radiation; Spectrometry, Fluorescence; Tryptophan

1985
Accessibility of tryptophan residues in Na,K-ATPase.
    The Journal of biological chemistry, 1987, Apr-05, Volume: 262, Issue:10

    Topics: Acrylamide; Acrylamides; Adenosine Diphosphate; Animals; Chymotrypsin; Dogs; In Vitro Techniques; Ouabain; Potassium; Protein Conformation; Protein Denaturation; Sodium; Sodium-Potassium-Exchanging ATPase; Spectrometry, Fluorescence; Tryptophan

1987
Fluorescence studies on the nucleotide- and Ca2+-binding domains of molluscan myosin.
    The Biochemical journal, 1985, Oct-01, Volume: 231, Issue:1

    Topics: Adenosine Diphosphate; Adenosine Triphosphate; Animals; Calcium; Electrophoresis, Polyacrylamide Gel; Mollusca; Myosin Subfragments; Myosins; Peptide Fragments; Protein Binding; Spectrometry, Fluorescence; Tryptophan

1985
The role of malate in hormone-induced enhancement of mitochondrial respiration.
    Archives of biochemistry and biophysics, 1986, Volume: 245, Issue:2

    Topics: Adenosine Diphosphate; Angiotensin II; Animals; Epinephrine; Glucagon; Hormones; Malates; Male; Mitochondria, Liver; Norepinephrine; Oxygen Consumption; Rats; Rats, Inbred Strains; Tryptophan; Vasopressins

1986
Fluorescence studies on the interaction between heavy meromyosin and magnesium ions. Effect of EDTA.
    Journal of mechanochemistry & cell motility, 1973, Volume: 2, Issue:1

    Topics: Adenosine Diphosphate; Adenosine Triphosphate; Binding Sites; Carbon Radioisotopes; Edetic Acid; Kinetics; Magnesium; Mathematics; Myosin Subfragments; Myosins; Protein Binding; Protein Conformation; Spectrometry, Fluorescence; Tryptophan

1973
Fluorescence studies on heavy meromyosin-substrate interaction.
    Biochemistry, 1972, Jul-18, Volume: 11, Issue:15

    Topics: Adenosine Diphosphate; Adenosine Triphosphatases; Adenosine Triphosphate; Animals; Calcium; Chromatography, Gel; Ethylmaleimide; Hydrolysis; Iodides; Magnesium; Mathematics; Muscle Proteins; Myosin Subfragments; Myosins; Nucleotides; Organomercury Compounds; Osmolar Concentration; Protein Binding; Protein Conformation; Rabbits; Spectrometry, Fluorescence; Structure-Activity Relationship; Tryptophan

1972
Studies of glutamate dehydrogenase: chemical modification and quantitative determination of tryptophan residues.
    European journal of biochemistry, 1974, Apr-01, Volume: 43, Issue:2

    Topics: Adenosine Diphosphate; Amino Acid Sequence; Amino Acids; Animals; Benzyl Compounds; Binding Sites; Cattle; Chromatography, Gel; Chymotrypsin; Circular Dichroism; Dansyl Compounds; Glutamate Dehydrogenase; Guanine Nucleotides; Hydrogen-Ion Concentration; Kinetics; Liver; NAD; Oxidation-Reduction; Peptide Fragments; Phenols; Protein Binding; Protein Conformation; Spectrophotometry, Ultraviolet; Sulfhydryl Compounds; Tryptophan; Ultracentrifugation

1974
Binding of UGA to wild type and suppressor tryptophan tRNA from E. coli.
    FEBS letters, 1974, Mar-01, Volume: 39, Issue:3

    Topics: Adenosine Diphosphate; Animals; Base Sequence; Binding Sites; Carbon Radioisotopes; Chromatography, Gel; Cytosine Nucleotides; Escherichia coli; Genetic Code; Mutation; Oligonucleotides; Phosphoric Diester Hydrolases; RNA, Bacterial; RNA, Transfer; Snakes; Suppression, Genetic; Transfer RNA Aminoacylation; Tritium; Tryptophan; Uracil Nucleotides; Venoms

1974
The effect of tryptophan administration on fatty acid synthesis in the liver of the fasted normal rat.
    Biochimica et biophysica acta, 1974, Sep-19, Volume: 360, Issue:3

    Topics: Acetates; Adenosine Diphosphate; Adenosine Monophosphate; Adenosine Triphosphate; Alanine; Animals; Carbon Radioisotopes; Cholesterol; Chromatography, Thin Layer; Citric Acid Cycle; Fasting; Fatty Acids; Fatty Acids, Nonesterified; Glycerol; Intestine, Small; Lipids; Liver; Male; Phospholipids; Pyruvate Dehydrogenase Complex; Quinolines; Rats; Time Factors; Triglycerides; Tritium; Tryptophan; Water

1974
"Impotent" platelets in albinos with prolonged bleeding times.
    Blood, 1972, Volume: 39, Issue:4

    Topics: Adenosine Diphosphate; Adolescent; Albinism; Blood Cell Count; Blood Coagulation Disorders; Blood Coagulation Factors; Blood Coagulation Tests; Blood Platelet Disorders; Blood Platelets; Child; Collagen; Female; Humans; Lipoproteins; Male; Microscopy, Electron; Norepinephrine; Platelet Adhesiveness; Serotonin; Tryptophan

1972
Interactions of Fructose 1,6-diphosphate, substrates, and monovalent cations with yeast pyruvate kinase monitored by changes in enzyme fluorescence.
    Biochemistry, 1971, Jul-20, Volume: 10, Issue:15

    Topics: Adenosine Diphosphate; Allosteric Regulation; Chemical Phenomena; Chemistry; Chlorides; Enzyme Activation; Fluorescence; Fluorometry; Fructose; Fructosephosphates; Hexosephosphates; Kinetics; Magnesium; Phosphoenolpyruvate; Potassium Chloride; Protein Binding; Protein Conformation; Pyruvate Kinase; Quaternary Ammonium Compounds; Saccharomyces; Temperature; Tryptophan; Ultracentrifugation

1971
Synaptosomal uptake: the modifying effect of mitochondria.
    Neurochemical research, 1980, Volume: 5, Issue:1

    Topics: Adenosine Diphosphate; Animals; Brain; Centrifugation, Density Gradient; Electron Transport Complex IV; Ficoll; Fumarate Hydratase; In Vitro Techniques; Kinetics; L-Lactate Dehydrogenase; Malates; Male; Mitochondria; Norepinephrine; Oligomycins; Oxygen Consumption; Pyruvates; Rats; Synaptosomes; Tryptophan

1980
Luminescence studies on the conformational behavior of horse-liver alcohol dehydrogenase.
    European journal of biochemistry, 1984, Aug-15, Volume: 143, Issue:1

    Topics: Adenosine; Adenosine Diphosphate; Alcohol Dehydrogenase; Alcohol Oxidoreductases; Animals; Energy Transfer; Ethanol; Horses; Liver; Luminescent Measurements; Mathematics; NAD; Protein Conformation; Tryptophan

1984
Nucleotide-induced conformational changes in the ATPase and substrate binding domains of the DnaK chaperone provide evidence for interdomain communication.
    The Journal of biological chemistry, 1995, Jul-14, Volume: 270, Issue:28

    Topics: Adenosine Diphosphate; Adenosine Triphosphatases; Adenosine Triphosphate; Animals; Binding Sites; Escherichia coli Proteins; Fluorescence; HSP70 Heat-Shock Proteins; Mice; Mice, Inbred BALB C; Peptide Fragments; Protein Conformation; Tryptophan

1995
Slow ligand-induced transitions in the allosteric phosphofructokinase from Escherichia coli.
    Journal of molecular biology, 1995, Jun-02, Volume: 249, Issue:2

    Topics: Adenosine Diphosphate; Adenylyl Imidodiphosphate; Allosteric Regulation; Allosteric Site; Crystallography, X-Ray; Escherichia coli; Fructosephosphates; Kinetics; Ligands; Phosphoenolpyruvate; Phosphofructokinase-1; Protein Conformation; Spectrometry, Fluorescence; Time Factors; Tryptophan

1995
Interaction of profilin with G-actin and poly(L-proline).
    Biochemistry, 1994, Jul-19, Volume: 33, Issue:28

    Topics: Actins; Adenosine Diphosphate; Adenosine Triphosphate; Animals; Calcium; Cations, Divalent; Cattle; Contractile Proteins; Kinetics; Microfilament Proteins; Osmolar Concentration; Peptides; Profilins; Rabbits; Spectrometry, Fluorescence; Spleen; Structure-Activity Relationship; Tryptophan; Ultracentrifugation

1994
Influence of MgADP on phosphofructokinase from Escherichia coli. Elucidation of coupling interactions with both substrates.
    Biochemistry, 1994, Mar-08, Volume: 33, Issue:9

    Topics: Adenosine Diphosphate; Adenosine Triphosphate; Allosteric Regulation; Binding Sites; Escherichia coli; Fructosephosphates; Kinetics; Ligands; Phosphofructokinase-1; Spectrometry, Fluorescence; Thermodynamics; Tryptophan

1994
Influence of substrates and MgADP on the time-resolved intrinsic fluorescence of phosphofructokinase from Escherichia coli. Correlation of tryptophan dynamics to coupling entropy.
    Biochemistry, 1994, Mar-08, Volume: 33, Issue:9

    Topics: Adenosine Diphosphate; Adenosine Triphosphate; Escherichia coli; Fluorescence Polarization; Iodides; Kinetics; Phosphofructokinase-1; Spectrometry, Fluorescence; Thermodynamics; Tryptophan

1994
Introduction of a tryptophan reporter group into loop 1 of the recA protein. Examination of the conformational states of the recA-ssDNA complex by fluorescence spectroscopy.
    The Journal of biological chemistry, 1994, Mar-18, Volume: 269, Issue:11

    Topics: Adenosine Diphosphate; Adenosine Triphosphate; Amino Acid Sequence; Base Sequence; Binding Sites; DNA Primers; DNA, Single-Stranded; Histidine; Kinetics; Molecular Sequence Data; Mutagenesis, Site-Directed; Nucleic Acid Conformation; Protein Conformation; Rec A Recombinases; Recombinant Proteins; Spectrometry, Fluorescence; Tryptophan

1994
Tryptophan-free Escherichia coli F1-ATPase.
    Archives of biochemistry and biophysics, 1994, Volume: 309, Issue:2

    Topics: Adenosine Diphosphate; Adenosine Triphosphate; Aurovertins; Azides; Base Sequence; Dicyclohexylcarbodiimide; Escherichia coli; Hydrogen-Ion Concentration; Molecular Sequence Data; Mutagenesis, Site-Directed; Mutation; Oxidative Phosphorylation; Proton-Translocating ATPases; Spectrometry, Fluorescence; Tryptophan

1994
Intrinsic tryptophan fluorescence of bovine liver adenosine kinase, characterization of ligand binding sites and conformational changes.
    European journal of biochemistry, 1994, Apr-15, Volume: 221, Issue:2

    Topics: Adenosine; Adenosine Diphosphate; Adenosine Kinase; Adenosine Monophosphate; Adenosine Triphosphate; Animals; Binding Sites; Cattle; Electrophoresis, Polyacrylamide Gel; Ligands; Liver; Magnesium Chloride; Molecular Weight; Protein Conformation; Spectrometry, Fluorescence; Tryptophan

1994
NADPH-initiated cytochrome P450-mediated free metal ion-independent oxidative damage of microsomal proteins. Exclusive prevention by ascorbic acid.
    The Journal of biological chemistry, 1994, May-06, Volume: 269, Issue:18

    Topics: Adenosine Diphosphate; Animals; Ascorbic Acid; Cytochrome P-450 Enzyme Inhibitors; Cytochrome P-450 Enzyme System; Guinea Pigs; Hydrolysis; Iron; Male; Microsomes, Liver; NADP; Oxidation-Reduction; Proteins; Tryptophan; Tyrosine

1994
Specific placement of tryptophan in the catalytic sites of Escherichia coli F1-ATPase provides a direct probe of nucleotide binding: maximal ATP hydrolysis occurs with three sites occupied.
    The Journal of biological chemistry, 1993, Sep-25, Volume: 268, Issue:27

    Topics: Adenosine Diphosphate; Adenosine Triphosphate; Adenylyl Imidodiphosphate; Amino Acid Sequence; Base Sequence; Binding Sites; Escherichia coli; Hydrolysis; Molecular Sequence Data; Mutagenesis, Site-Directed; Oligodeoxyribonucleotides; Proton-Translocating ATPases; Recombinant Proteins; Spectrometry, Fluorescence; Tryptophan

1993
Intrinsic tryptophan fluorescence of rat liver elongation factor eEF-2 to monitor the interaction with guanylic and adenylic nucleotides and related conformational changes.
    Biochemistry, 1993, Mar-02, Volume: 32, Issue:8

    Topics: Adenine Nucleotides; Adenosine Diphosphate; Adenosine Triphosphate; Animals; Guanine Nucleotides; Guanosine Diphosphate; Guanosine Triphosphate; Kinetics; Mathematics; Peptide Elongation Factor 2; Peptide Elongation Factors; Protein Conformation; Rats; Spectrometry, Fluorescence; Tryptophan

1993
Comparative steady-state fluorescence studies of cytosolic rat liver (GTP), Saccharomyces cerevisiae (ATP) and Escherichia coli (ATP) phospho enol pyruvate carboxykinases.
    Biochimica et biophysica acta, 1993, Mar-05, Volume: 1162, Issue:1-2

    Topics: Acrylamide; Acrylamides; Adenosine Diphosphate; Adenosine Triphosphate; Animals; Binding Sites; Cytosol; Escherichia coli; Fluorescence; Guanosine Triphosphate; Liver; Manganese; Nucleotides; Phosphoenolpyruvate Carboxykinase (GTP); Protein Conformation; Rats; Saccharomyces cerevisiae; Sodium Iodide; Tryptophan

1993
Estimation of the intracellular free ADP concentration by 19F NMR studies of fluorine-labeled yeast phosphoglycerate kinase in vivo.
    Biochemistry, 1993, May-11, Volume: 32, Issue:18

    Topics: Adenine Nucleotides; Adenosine Diphosphate; Cytosol; Diphosphoglyceric Acids; Enzyme Induction; Fluorine Radioisotopes; Glyceric Acids; Histocytochemistry; Hydrogen-Ion Concentration; Ligands; Magnetic Resonance Spectroscopy; Phosphoglycerate Kinase; Recombinant Proteins; Saccharomyces cerevisiae; Transformation, Genetic; Tryptophan

1993
Structural mapping of catalytic site with respect to alpha-subunit and noncatalytic site in yeast mitochondrial F1-ATPase using fluorescence resonance energy transfer.
    The Journal of biological chemistry, 1993, Jun-25, Volume: 268, Issue:18

    Topics: Adenosine Diphosphate; Adenosine Triphosphate; Binding Sites; Catalysis; Energy Transfer; Fluorescent Dyes; Guanosine Diphosphate; Mitochondria; Proton-Translocating ATPases; Schizosaccharomyces; Spectrometry, Fluorescence; Tryptophan

1993
Sensitivity of Escherichia coli succinyl-CoA mutants at Trp beta 76 to clostripain and to trypsin. ADP and ATP protect against cleavage by clostripain at Arg beta 80.
    The Journal of biological chemistry, 1993, Jun-25, Volume: 268, Issue:18

    Topics: Acyl Coenzyme A; Adenosine Diphosphate; Adenosine Triphosphate; Arginine; Base Sequence; Cysteine Endopeptidases; Electrophoresis, Polyacrylamide Gel; Escherichia coli; Hydrolysis; Molecular Sequence Data; Mutation; Oligodeoxyribonucleotides; Phosphorylation; Succinate-CoA Ligases; Trypsin; Tryptophan

1993
Conformational changes in subdomain 2 of G-actin: fluorescence probing by dansyl ethylenediamine attached to Gln-41.
    Biophysical journal, 1995, Volume: 69, Issue:5

    Topics: Actins; Adenosine Diphosphate; Adenosine Triphosphate; Animals; Binding Sites; Biophysical Phenomena; Biophysics; Biopolymers; Calcium; Dansyl Compounds; Energy Transfer; Ethylenediamines; Fluorescent Dyes; Glutamine; In Vitro Techniques; Magnesium; Muscle, Skeletal; Protein Conformation; Rabbits; Transglutaminases; Tryptophan

1995
Mutational analysis of the role of hydrophobic residues in the 338-348 helix on actin in actomyosin interactions.
    Biochemistry, 1996, Mar-26, Volume: 35, Issue:12

    Topics: Actin Cytoskeleton; Actins; Actomyosin; Adenosine Diphosphate; Adenosine Triphosphate; Base Sequence; Circular Dichroism; Electrophoresis, Polyacrylamide Gel; Fluorescence; Kinetics; Molecular Sequence Data; Mutagenesis, Site-Directed; Myosin Subfragments; Myosins; Phalloidine; Protein Binding; Protein Structure, Secondary; Tryptophan; Yeasts

1996
Specific tryptophan substitution in catalytic sites of Escherichia coli F1-ATPase allows differentiation between bound substrate ATP and product ADP in steady-state catalysis.
    The Journal of biological chemistry, 1996, Aug-02, Volume: 271, Issue:31

    Topics: Adenosine Diphosphate; Adenosine Triphosphate; Adenylyl Imidodiphosphate; Base Sequence; Binding Sites; Catalysis; Escherichia coli; Fluorescent Dyes; Hydrolysis; Kinetics; Magnesium; Models, Biological; Molecular Sequence Data; Mutagenesis, Insertional; Oligodeoxyribonucleotides; Proton-Translocating ATPases; Spectrometry, Fluorescence; Substrate Specificity; Tryptophan

1996
Kinetics of interaction of Rab5 and Rab7 with nucleotides and magnesium ions.
    The Journal of biological chemistry, 1996, Aug-23, Volume: 271, Issue:34

    Topics: Adenosine Diphosphate; Adenosine Triphosphate; Base Sequence; Cell-Free System; DNA Primers; Escherichia coli; GTP Phosphohydrolases; GTP-Binding Proteins; Guanosine Diphosphate; Guanosine Triphosphate; Kinetics; Magnesium; Molecular Sequence Data; rab GTP-Binding Proteins; rab5 GTP-Binding Proteins; rab7 GTP-Binding Proteins; Recombinant Proteins; Spectrometry, Fluorescence; Tryptophan

1996
Substrate-induced conformational changes in yeast 3-phosphoglycerate kinase monitored by fluorescence of single tryptophan probes.
    Protein science : a publication of the Protein Society, 1996, Volume: 5, Issue:6

    Topics: Adenosine Diphosphate; Adenosine Monophosphate; Adenosine Triphosphate; Binding Sites; Catalysis; Diphosphoglyceric Acids; Fluorescence; Fluorescent Dyes; Glyceric Acids; Magnesium; Mutagenesis; Phosphoglycerate Kinase; Point Mutation; Protein Conformation; Protein Structure, Tertiary; Saccharomyces cerevisiae; Spectrometry, Fluorescence; Titrimetry; Tryptophan

1996
Domain interactions of the peripheral preprotein Translocase subunit SecA.
    Biochemistry, 1996, Sep-17, Volume: 35, Issue:37

    Topics: Adenosine Diphosphate; Adenosine Triphosphatases; Adenylyl Imidodiphosphate; Amino Acid Sequence; Bacterial Proteins; Calorimetry, Differential Scanning; Escherichia coli; Escherichia coli Proteins; Membrane Transport Proteins; Models, Chemical; Mutagenesis, Site-Directed; Peptide Fragments; Recombinant Proteins; Restriction Mapping; Scattering, Radiation; SEC Translocation Channels; SecA Proteins; Sequence Deletion; Spectrometry, Fluorescence; Thermodynamics; Trypsin; Tryptophan

1996
Effects of NAD+ binding on the luminescence of tryptophans 84 and 310 of glyceraldehyde-3-phosphate dehydrogenase from Bacillus stearothermophilus.
    Biochemistry, 1996, Sep-24, Volume: 35, Issue:38

    Topics: Adenosine Diphosphate; Adenosine Monophosphate; Fluorescence; Geobacillus stearothermophilus; Glyceraldehyde-3-Phosphate Dehydrogenases; Kinetics; Luminescent Measurements; Mutagenesis, Site-Directed; Mutation; NAD; Protein Conformation; Tryptophan

1996
Intrinsic fluorescence studies of the chaperonin GroEL containing single Tyr --> Trp replacements reveal ligand-induced conformational changes.
    The Journal of biological chemistry, 1996, Dec-13, Volume: 271, Issue:50

    Topics: Adenosine Diphosphate; Adenylyl Imidodiphosphate; Chaperonin 60; Magnesium; Mutagenesis, Site-Directed; Potassium; Protein Conformation; Spectrometry, Fluorescence; Tryptophan; Tyrosine

1996
The second step of ATP binding to DnaK induces peptide release.
    Journal of molecular biology, 1996, Nov-15, Volume: 263, Issue:5

    Topics: Adenosine Diphosphate; Adenosine Triphosphate; Escherichia coli Proteins; Fluorescent Dyes; HSP70 Heat-Shock Proteins; Hydrolysis; Molecular Conformation; Peptides; Protein Binding; Tryptophan

1996
Conformational changes of the yeast mitochondrial adenosine diphosphate/adenosine triphosphate carrier studied through its intrinsic fluorescence. 2. Assignment of tryptophanyl residues of the carrier to the responses to specific ligands.
    Biochemistry, 1996, Dec-17, Volume: 35, Issue:50

    Topics: Adenosine Diphosphate; Atractyloside; Binding Sites; Bongkrekic Acid; Kinetics; Mitochondria; Mitochondrial ADP, ATP Translocases; Models, Structural; Mutagenesis, Site-Directed; Point Mutation; Protein Conformation; Protein Structure, Secondary; Recombinant Proteins; Saccharomyces cerevisiae; Spectrometry, Fluorescence; Tryptophan

1996
Mechanism for coupling free energy in ATPase to the myosin active site.
    Biochemistry, 1997, Mar-18, Volume: 36, Issue:11

    Topics: Adenosine Diphosphate; Adenosine Triphosphate; Animals; Binding Sites; Kinetics; Muscle, Skeletal; Myosin Subfragments; Myosins; Rabbits; Spectrometry, Fluorescence; Thermodynamics; Tryptophan

1997
Tryptophan fluorescence reports nucleotide-induced conformational changes in a domain of the ArsA ATPase.
    The Journal of biological chemistry, 1997, Aug-08, Volume: 272, Issue:32

    Topics: Adenosine Diphosphate; Adenosine Triphosphatases; Adenosine Triphosphate; Amino Acid Sequence; Arsenite Transporting ATPases; Arsenites; Consensus Sequence; Escherichia coli; Hydrolysis; Ion Pumps; Membrane Proteins; Molecular Sequence Data; Multienzyme Complexes; Operon; Oxidation-Reduction; Protein Conformation; Spectrometry, Fluorescence; Tryptophan

1997
The interaction of shikimate kinase from Erwinia chrystanthemi with substrates.
    Biochemical Society transactions, 1997, Volume: 25, Issue:4

    Topics: Adenosine Diphosphate; Binding Sites; Dickeya chrysanthemi; Kinetics; Phosphotransferases (Alcohol Group Acceptor); Shikimic Acid; Spectrometry, Fluorescence; Tryptophan

1997
Kinetics of the reactions of the Escherichia coli molecular chaperone DnaK with ATP: evidence that a three-step reaction precedes ATP hydrolysis.
    Biochemistry, 1998, Jan-27, Volume: 37, Issue:4

    Topics: Adenosine Diphosphate; Adenosine Triphosphate; Bacterial Proteins; Escherichia coli; Escherichia coli Proteins; HSP70 Heat-Shock Proteins; Hydrolysis; Kinetics; Models, Chemical; Molecular Chaperones; Spectrometry, Fluorescence; Thermodynamics; Tryptophan

1998
Catalytic site nucleotide binding and hydrolysis in F1F0-ATP synthase.
    Biochemistry, 1998, Jul-28, Volume: 37, Issue:30

    Topics: Adenosine Diphosphate; Adenosine Triphosphate; Binding Sites; Catalysis; Hydrolysis; Kinetics; Magnesium; Mutagenesis, Site-Directed; Proteolipids; Proton Pumps; Proton-Translocating ATPases; Spectrometry, Fluorescence; Tryptophan; Tyrosine

1998
Effects of the inhibitors azide, dicyclohexylcarbodiimide, and aurovertin on nucleotide binding to the three F1-ATPase catalytic sites measured using specific tryptophan probes.
    The Journal of biological chemistry, 1998, Dec-11, Volume: 273, Issue:50

    Topics: Adenosine Diphosphate; Adenosine Triphosphate; Aurovertins; Catalytic Domain; Dicyclohexylcarbodiimide; Enzyme Inhibitors; Molecular Probes; Protein Binding; Proton-Translocating ATPases; Sodium Azide; Spectrometry, Fluorescence; Tryptophan

1998
Spectroscopic studies of the ncd motor domain.ADP complex: CD spectrum of ADP induced by binding to the motor domain of ncd.
    Biochemistry, 1998, Nov-24, Volume: 37, Issue:47

    Topics: Adenosine Diphosphate; Animals; Circular Dichroism; Creatine Kinase; Drosophila melanogaster; Drosophila Proteins; Fluorescent Dyes; Kinesins; Macromolecular Substances; Models, Molecular; Protein Binding; Protein Structure, Tertiary; Spectrometry, Fluorescence; Spectrophotometry, Ultraviolet; Tryptophan; Tyrosine

1998
The alpha 3(beta Y341W)3 gamma subcomplex of the F1-ATPase from the thermophilic Bacillus PS3 fails to dissociate ADP when MgATP is hydrolyzed at a single catalytic site and attains maximal velocity when three catalytic sites are saturated with MgATP.
    Biochemistry, 1998, Nov-24, Volume: 37, Issue:47

    Topics: Adenosine Diphosphate; Adenosine Triphosphate; Animals; Azides; Bacillus; Binding Sites; Catalysis; Cattle; Cross-Linking Reagents; Detergents; Dimethylamines; Fluorescence Polarization; Hydrolysis; Kinetics; Mutagenesis, Site-Directed; Proton-Translocating ATPases; Spectrometry, Fluorescence; Tryptophan; Tyrosine

1998
Inhibition of myosin ATPase by metal fluoride complexes.
    Biochimica et biophysica acta, 1999, Feb-10, Volume: 1430, Issue:1

    Topics: Acrylamide; Actins; Adenosine Diphosphate; Binding Sites; Circular Dichroism; Enzyme Inhibitors; Fluorescence; Fluorides; Gallium; Magnesium Compounds; Myosins; Tryptophan

1999
Interaction of bis(1-anilino-8-naphthalenesulfonate) with yeast hexokinase: a steady-state fluorescence study.
    Journal of photochemistry and photobiology. B, Biology, 1998, Volume: 47, Issue:2-3

    Topics: Adenosine Diphosphate; Anilino Naphthalenesulfonates; Energy Transfer; Fluorescence; Fluorescent Dyes; Glucose; Hexokinase; Tryptophan; Yeasts

1998
The role of beta-Arg-182, an essential catalytic site residue in Escherichia coli F1-ATPase.
    Biochemistry, 1999, Jun-15, Volume: 38, Issue:24

    Topics: Adenosine Diphosphate; Adenosine Triphosphate; Aluminum; Amino Acid Substitution; Arginine; Binding Sites; Catalysis; Escherichia coli; Fluorine; Glutamine; Lysine; Mutagenesis, Site-Directed; Proton-Translocating ATPases; Spectrometry, Fluorescence; Tryptophan

1999
[Conformational changes in the bacterial RecA protein upon its interaction with ligands: differential spectrofluorometry of tyrosine and tryptophan protein residues].
    Doklady Akademii nauk, 1999, Volume: 366, Issue:4

    Topics: Adenosine Diphosphate; Adenosine Triphosphate; DNA, Single-Stranded; Escherichia coli; Ligands; Protein Binding; Protein Conformation; Rec A Recombinases; Spectrometry, Fluorescence; Tryptophan; Tyrosine

1999
A kinetic analysis of the nucleotide-induced allosteric transitions of GroEL.
    Journal of molecular biology, 1999, Oct-29, Volume: 293, Issue:3

    Topics: Adenosine Diphosphate; Adenosine Triphosphate; Allosteric Regulation; Amino Acid Substitution; Binding, Competitive; Chaperonin 60; Escherichia coli; Fluorescence; Fluorometry; Hydrolysis; Kinetics; Models, Chemical; Nucleotides; Phosphates; Protein Conformation; Thermodynamics; Tryptophan; Tyrosine

1999
Intrinsic tryptophan fluorescence identifies specific conformational changes at the actomyosin interface upon actin binding and ADP release.
    Biochemistry, 1999, Nov-02, Volume: 38, Issue:44

    Topics: Actins; Actomyosin; Adenosine Diphosphate; Adenosine Triphosphate; Animals; Binding Sites; In Vitro Techniques; Microscopy, Electron; Models, Molecular; Molecular Motor Proteins; Muscle, Smooth; Protein Conformation; Protein Engineering; Recombinant Proteins; Spectrometry, Fluorescence; Tryptophan

1999
Importance of F1-ATPase residue alpha-Arg-376 for catalytic transition state stabilization.
    Biochemistry, 1999, Nov-23, Volume: 38, Issue:47

    Topics: Adenosine Diphosphate; Adenosine Triphosphate; Aluminum; Arginine; Binding Sites; Catalysis; Cysteine; Enzyme Stability; Escherichia coli; Fluorine; Glutamine; Lysine; Models, Molecular; Mutagenesis, Site-Directed; Proton-Translocating ATPases; Spectrometry, Fluorescence; Tryptophan; Tyrosine

1999
The kinetic mechanism of myosin V.
    Proceedings of the National Academy of Sciences of the United States of America, 1999, Nov-23, Volume: 96, Issue:24

    Topics: Actin Cytoskeleton; Actins; Actomyosin; Adenosine Diphosphate; Animals; Calmodulin-Binding Proteins; Chickens; Fluorescence; Kinetics; Myosin Type V; Myosins; Nerve Tissue Proteins; Phosphates; Rabbits; Tryptophan

1999
Large scale purification of detergent-soluble P-glycoprotein from Pichia pastoris cells and characterization of nucleotide binding properties of wild-type, Walker A, and Walker B mutant proteins.
    The Journal of biological chemistry, 1999, Dec-03, Volume: 274, Issue:49

    Topics: Adenosine Diphosphate; Adenosine Triphosphate; Animals; ATP Binding Cassette Transporter, Subfamily B; ATP-Binding Cassette Transporters; Chromatography; Dose-Response Relationship, Drug; Electrophoresis, Polyacrylamide Gel; Fermentation; Fluorescent Dyes; Kinetics; Mice; Microsomes; Mutagenesis; Pichia; Protein Binding; Spectrometry, Fluorescence; Tryptophan

1999
The HPr kinase from Bacillus subtilis is a homo-oligomeric enzyme which exhibits strong positive cooperativity for nucleotide and fructose 1,6-bisphosphate binding.
    The Journal of biological chemistry, 2000, Jan-21, Volume: 275, Issue:3

    Topics: Adenosine Diphosphate; Adenosine Triphosphate; Bacillus subtilis; Bacterial Proteins; Binding, Competitive; Dose-Response Relationship, Drug; Fructosediphosphates; Iodides; Kinetics; Nucleotides; Phosphorylation; Protein Binding; Protein Conformation; Protein Serine-Threonine Kinases; Spectrometry, Fluorescence; Tryptophan; Ultracentrifugation

2000
Modulating the midpoint potential of the [4Fe-4S] cluster of the nitrogenase Fe protein.
    Biochemistry, 2000, Feb-01, Volume: 39, Issue:4

    Topics: Adenosine Diphosphate; Adenosine Triphosphate; Amino Acid Substitution; Bacterial Proteins; Crystallography, X-Ray; Iron-Sulfur Proteins; Models, Molecular; Nitrogenase; Oxidoreductases; Phenylalanine; Tryptophan

2000
Drug selectivity is determined by coupling across the NAD+ site of IMP dehydrogenase.
    Biochemistry, 2000, Feb-22, Volume: 39, Issue:7

    Topics: Adenosine Diphosphate; Animals; Cricetinae; Cricetulus; Drug Resistance; Drug Synergism; Enzyme Inhibitors; Humans; IMP Dehydrogenase; Mutagenesis, Site-Directed; Mycophenolic Acid; NAD; Ribavirin; Spectrometry, Fluorescence; Tritrichomonas foetus; Tryptophan

2000
Fluorescence and excitation Escherichia coli RecA protein spectra analyzed separately for tyrosine and tryptophan residues.
    Archives of biochemistry and biophysics, 2000, Apr-01, Volume: 376, Issue:1

    Topics: Adenosine Diphosphate; Adenosine Triphosphate; DNA, Bacterial; DNA, Single-Stranded; Escherichia coli; Ligands; Macromolecular Substances; Magnesium; Protein Conformation; Rec A Recombinases; Spectrometry, Fluorescence; Spectrophotometry; Tryptophan; Tyrosine

2000
Purification, cloning, expression, and mechanism of action of a novel platelet aggregation inhibitor from the salivary gland of the blood-sucking bug, Rhodnius prolixus.
    The Journal of biological chemistry, 2000, Apr-28, Volume: 275, Issue:17

    Topics: Adenosine Diphosphate; Amino Acid Sequence; Animals; Arachidonic Acid; Blood Platelets; Calcium; Cattle; Cell Adhesion; Cell Aggregation; Chromatography, High Pressure Liquid; Chromatography, Ion Exchange; Cloning, Molecular; Collagen; Crotalid Venoms; Cyclic AMP; DNA, Complementary; Dose-Response Relationship, Drug; Humans; Insect Proteins; Lectins, C-Type; Molecular Sequence Data; Platelet Aggregation Inhibitors; Rabbits; Rhodnius; Salivary Glands; Salivary Proteins and Peptides; Sequence Homology, Amino Acid; Thromboxane A2; Time Factors; Tryptophan

2000
Kinesin has three nucleotide-dependent conformations. Implications for strain-dependent release.
    The Journal of biological chemistry, 2000, Nov-10, Volume: 275, Issue:45

    Topics: Adenosine Diphosphate; Adenosine Triphosphatases; Binding Sites; Catalytic Domain; Computer Simulation; Crystallography, X-Ray; Humans; Kinesins; Kinetics; Microtubules; Models, Biological; Models, Molecular; Mutagenesis, Site-Directed; Nucleotides; Protein Conformation; Protein Structure, Tertiary; Spectrometry, Fluorescence; Time Factors; Tryptophan

2000
Magnesium-adenosine diphosphate binding sites in wild-type creatine kinase and in mutants: role of aromatic residues probed by Raman and infrared spectroscopies.
    Biochemistry, 2000, Aug-08, Volume: 39, Issue:31

    Topics: Adenosine Diphosphate; Amino Acid Substitution; Animals; Binding Sites; Creatine Kinase; Isoenzymes; Magnesium; Muscle, Skeletal; Mutagenesis, Site-Directed; Rabbits; Solutions; Spectrometry, Fluorescence; Spectrophotometry, Infrared; Spectrum Analysis, Raman; Tryptophan; Tyrosine

2000
New probes of the F1-ATPase catalytic transition state reveal that two of the three catalytic sites can assume a transition state conformation simultaneously.
    Biochemistry, 2000, Aug-08, Volume: 39, Issue:31

    Topics: Adenosine Diphosphate; Arginine; Binding Sites; Catalysis; Drug Synergism; Enzyme Activation; Enzyme Inhibitors; Escherichia coli; Glutamine; Inosine Diphosphate; Lysine; Mutagenesis, Site-Directed; Protein Conformation; Proton-Translocating ATPases; Scandium; Spectrometry, Fluorescence; Titrimetry; Tryptophan; Tyrosine

2000
On the tryptophan residue of smooth muscle myosin that responds to binding of nucleotide.
    Proceedings of the National Academy of Sciences of the United States of America, 2000, Oct-10, Volume: 97, Issue:21

    Topics: Adenosine Diphosphate; Adenosine Triphosphate; Animals; Base Sequence; Binding Sites; DNA Primers; Muscle, Smooth; Mutagenesis; Myosins; Rabbits; Recombinant Proteins; Spectrometry, Fluorescence; Tryptophan

2000
Two conserved lysines at the 50/20-kDa junction of myosin are necessary for triggering actin activation.
    The Journal of biological chemistry, 2001, Feb-02, Volume: 276, Issue:5

    Topics: Actins; Adenosine Diphosphate; Adenosine Triphosphatases; Adenosine Triphosphate; Animals; Chickens; Conserved Sequence; In Vitro Techniques; Lysine; Molecular Weight; Mutation; Myosin Subfragments; Myosins; Protein Hydrolysates; Tryptophan

2001
Interdependence of profilin, cation, and nucleotide binding to vertebrate non-muscle actin.
    Biochemistry, 2000, Oct-31, Volume: 39, Issue:43

    Topics: Actins; Adenosine Diphosphate; Adenosine Triphosphate; Animals; Binding Sites; Cations, Divalent; Cattle; Contractile Proteins; Ethenoadenosine Triphosphate; Kinetics; Magnesium; Microfilament Proteins; Models, Chemical; Profilins; Protein Denaturation; Protein Isoforms; Spectrometry, Fluorescence; Thermodynamics; Tryptophan

2000
Actin and light chain isoform dependence of myosin V kinetics.
    Biochemistry, 2000, Nov-21, Volume: 39, Issue:46

    Topics: Actins; Adenosine Diphosphate; Adenosine Triphosphate; Amino Acid Motifs; Animals; Calmodulin-Binding Proteins; Chickens; Kinetics; Muscle, Skeletal; Myosin Light Chains; Myosin Type V; Myosins; Nerve Tissue Proteins; ortho-Aminobenzoates; Protein Binding; Protein Isoforms; Rabbits; Spectrometry, Fluorescence; Tryptophan

2000
Resolution of conformational states of Dictyostelium myosin II motor domain using tryptophan (W501) mutants: implications for the open-closed transition identified by crystallography.
    Biochemistry, 2000, Dec-26, Volume: 39, Issue:51

    Topics: Adenosine Diphosphate; Adenosine Triphosphate; Adenylyl Imidodiphosphate; Aluminum Compounds; Animals; Binding Sites; Crystallography, X-Ray; Dictyostelium; Fluorides; Hydrolysis; Kinetics; Molecular Motor Proteins; Mutagenesis, Site-Directed; Myosins; Protein Conformation; Protein Structure, Tertiary; Spectrometry, Fluorescence; Tryptophan

2000
Equilibrium binding studies of a tryptophan-shifted mutant of phosphofructokinase from Bacillus stearothermophilus.
    Biochemistry, 2001, Mar-06, Volume: 40, Issue:9

    Topics: Adenosine Diphosphate; Adenosine Triphosphate; Allosteric Regulation; Binding, Competitive; Enzyme Inhibitors; Geobacillus stearothermophilus; Kinetics; Mutagenesis, Site-Directed; Phenylalanine; Phosphoenolpyruvate; Phosphofructokinase-1; Protein Binding; Protein Conformation; Temperature; Thermodynamics; Tryptophan

2001
The dynamics of the relay loop tryptophan residue in the Dictyostelium myosin motor domain and the origin of spectroscopic signals.
    The Journal of biological chemistry, 2001, Jun-01, Volume: 276, Issue:22

    Topics: Adenosine Diphosphate; Adenosine Triphosphate; Animals; Anisotropy; Cloning, Molecular; Dictyostelium; Kinetics; Models, Chemical; Myosins; Phenylalanine; Protein Structure, Tertiary; Spectrometry, Fluorescence; Spectrophotometry; Time Factors; Tryptophan

2001
Effect of ionic strength on the conformation of myosin subfragment 1-nucleotide complexes.
    Biophysical journal, 2001, Volume: 81, Issue:2

    Topics: Adenosine Diphosphate; Adenosine Triphosphatases; Adenosine Triphosphate; Alkylation; Animals; Circular Dichroism; Cysteine; Lysine; Muscle, Skeletal; Myosin Subfragments; Nucleotides; Osmolar Concentration; Potassium; Protein Binding; Protein Conformation; Rabbits; Time Factors; Trinitrobenzenes; Tryptophan; Vanadates

2001
The fluorescence spectrum of the introduced tryptophans in the alpha 3(beta F155W)3gamma subcomplex of the F1-ATPase from the thermophilic Bacillus PS3 cannot be used to distinguish between the number of nucleoside di- and triphosphates bound to catalytic
    The Journal of biological chemistry, 2002, Mar-15, Volume: 277, Issue:11

    Topics: Adenosine Diphosphate; Adenosine Triphosphate; Adenylyl Imidodiphosphate; Bacillus; Catalytic Domain; Mutation; Protein Subunits; Proton-Translocating ATPases; Spectrometry, Fluorescence; Tryptophan

2002
Tyrosine mediated tryptophan ATP sensitivity in skeletal myosin.
    Biochemistry, 2002, Feb-05, Volume: 41, Issue:5

    Topics: Adenosine Diphosphate; Adenosine Triphosphate; Animals; Models, Chemical; Muscle, Skeletal; Myosin Subfragments; Protein Conformation; Rabbits; Spectrometry, Fluorescence; Spectrophotometry; Tryptophan; Tyrosine

2002
A kinetic model of the co-operative binding of calcium and ADP to scallop (Argopecten irradians) heavy meromyosin.
    The Biochemical journal, 2002, Jul-01, Volume: 365, Issue:Pt 1

    Topics: Adenosine Diphosphate; Adenosine Triphosphate; Animals; Ca(2+) Mg(2+)-ATPase; Calcium; In Vitro Techniques; Kinetics; Models, Biological; Mollusca; Myosin Subfragments; ortho-Aminobenzoates; Protein Binding; Protein Conformation; Spectrometry, Fluorescence; Tryptophan

2002
Transition state P-glycoprotein binds drugs and modulators with unchanged affinity, suggesting a concerted transport mechanism.
    Biochemistry, 2003, Feb-11, Volume: 42, Issue:5

    Topics: Adenosine Diphosphate; Anilino Naphthalenesulfonates; Animals; ATP Binding Cassette Transporter, Subfamily B, Member 1; Azides; Benzimidazoles; Biological Transport; CHO Cells; Cobalt; Cricetinae; Dihydropyridines; Doxorubicin; Magnesium; Pharmaceutical Preparations; Photoaffinity Labels; Protein Binding; Spectrometry, Fluorescence; Tryptophan; Vanadates; Vinblastine

2003
Conformational dynamics of DnaB helicase upon DNA and nucleotide binding: analysis by intrinsic tryptophan fluorescence quenching.
    Biochemistry, 2003, Feb-25, Volume: 42, Issue:7

    Topics: Adenosine Diphosphate; Adenosine Triphosphate; Amino Acid Sequence; Bacterial Proteins; Binding Sites; DNA Helicases; DNA-Binding Proteins; DnaB Helicases; Enzyme Activation; Escherichia coli Proteins; Models, Molecular; Molecular Sequence Data; Mutagenesis, Site-Directed; Oligonucleotides; Potassium Iodide; Protein Conformation; Protein Structure, Tertiary; Recombinant Proteins; Sequence Homology, Amino Acid; Spectrometry, Fluorescence; Titrimetry; Tryptophan

2003
Differences in nucleotide-binding site of isoapyrases deduced from tryptophan fluorescence.
    Phytochemistry, 2003, Volume: 63, Issue:1

    Topics: Acrylamide; Adenosine Diphosphate; Adenosine Triphosphate; Apyrase; Binding Sites; Cesium; Iodides; Isoenzymes; Kinetics; Nucleotides; Photobleaching; Solanum tuberosum; Spectrometry, Fluorescence; Substrate Specificity; Tryptophan

2003
Mechanism of inhibition of skeletal muscle actomyosin by N-benzyl-p-toluenesulfonamide.
    Biochemistry, 2003, May-27, Volume: 42, Issue:20

    Topics: Actins; Adenosine Diphosphate; Adenosine Triphosphate; Animals; Binding Sites; Enzyme Inhibitors; Hydrolysis; In Vitro Techniques; Kinetics; Models, Biological; Muscle Contraction; Muscle, Skeletal; Myosin Subfragments; Phosphates; Pyrenes; Rabbits; Spectrometry, Fluorescence; Sulfonamides; Toluene; Tryptophan

2003
Requirement of domain-domain interaction for conformational change and functional ATP hydrolysis in myosin.
    The Journal of biological chemistry, 2003, Aug-15, Volume: 278, Issue:33

    Topics: Actins; Adenosine Diphosphate; Adenosine Triphosphatases; Adenosine Triphosphate; Animals; Cell Division; Cell Movement; Dictyostelium; Fluorescence; Fluorescence Resonance Energy Transfer; Hydrolysis; Mutagenesis, Site-Directed; Myosins; Phenotype; Protein Structure, Tertiary; Tryptophan

2003
Regulation of RecA protein binding to DNA by opposing effects of ATP and ADP on inter-domain contacts: analysis by urea-induced unfolding of wild-type and C-terminal truncated RecA.
    Journal of molecular biology, 2003, May-30, Volume: 329, Issue:2

    Topics: Adenosine Diphosphate; Adenosine Triphosphate; Circular Dichroism; DNA; DNA, Bacterial; DNA, Single-Stranded; Escherichia coli; Ligands; Models, Molecular; Nucleic Acid Conformation; Protein Binding; Protein Conformation; Protein Folding; Protein Structure, Tertiary; Rec A Recombinases; Recombination, Genetic; Spectrometry, Fluorescence; Tryptophan; Urea

2003
Regulation and mutational analysis of the HPr kinase/phosphorylase from Bacillus subtilis.
    Biochemistry, 2003, Jun-10, Volume: 42, Issue:22

    Topics: Adenosine Diphosphate; Adenosine Triphosphate; Amino Acid Motifs; Amino Acid Sequence; Bacillus subtilis; Binding Sites; Fluorescence Resonance Energy Transfer; Fructosediphosphates; Kinetics; Magnesium; Models, Molecular; Molecular Sequence Data; Mutagenesis, Site-Directed; Phosphates; Phosphoprotein Phosphatases; Phosphorylation; Protein Serine-Threonine Kinases; Recombinant Proteins; Tryptophan

2003
D1 ring is stable and nucleotide-independent, whereas D2 ring undergoes major conformational changes during the ATPase cycle of p97-VCP.
    The Journal of biological chemistry, 2003, Aug-29, Volume: 278, Issue:35

    Topics: Adenosine Diphosphate; Adenosine Triphosphatases; Adenosine Triphosphate; Binding Sites; Blotting, Western; Cell Cycle Proteins; Chromatography, Gel; Chromatography, High Pressure Liquid; Cloning, Molecular; Electrophoresis, Polyacrylamide Gel; Hydrolysis; Models, Biological; Models, Genetic; Molecular Chaperones; Mutagenesis, Site-Directed; Mutation; Nucleotides; Protein Conformation; Protein Structure, Tertiary; Recombinant Fusion Proteins; Spectrometry, Fluorescence; Time Factors; Tryptophan; Valosin Containing Protein

2003
ATP binding is critical for the conformational change from an open to closed state in archaeal group II chaperonin.
    The Journal of biological chemistry, 2003, Nov-07, Volume: 278, Issue:45

    Topics: Adenosine Diphosphate; Adenosine Triphosphate; Ammonium Sulfate; Bacterial Proteins; Chaperonins; Electrophoresis, Polyacrylamide Gel; Endopeptidases; Escherichia coli; Fluorescence; Hydrolysis; Mutagenesis, Site-Directed; Potassium; Protein Conformation; Protein Folding; Spectrometry, Fluorescence; Structure-Activity Relationship; Thermococcus; Tryptophan

2003
Biochemical characterization and NMR studies of the nucleotide-binding domain 1 of multidrug-resistance-associated protein 1: evidence for interaction between ATP and Trp653.
    The Biochemical journal, 2003, Dec-15, Volume: 376, Issue:Pt 3

    Topics: Adenosine Diphosphate; Adenosine Triphosphatases; Adenosine Triphosphate; Amino Acid Sequence; Binding Sites; HL-60 Cells; Humans; Magnesium; Molecular Sequence Data; Multidrug Resistance-Associated Proteins; Nuclear Magnetic Resonance, Biomolecular; Protein Structure, Tertiary; Recombinant Proteins; Sequence Alignment; Spectrometry, Fluorescence; Tryptophan

2003
Nucleotide and phospholipid-dependent control of PPXD and C-domain association for SecA ATPase.
    Biochemistry, 2003, Nov-25, Volume: 42, Issue:46

    Topics: Adenosine Diphosphate; Adenosine Triphosphatases; Amino Acid Substitution; Anilino Naphthalenesulfonates; Bacillus subtilis; Bacterial Proteins; Cysteine; Escherichia coli Proteins; Fluorescence Resonance Energy Transfer; Membrane Transport Proteins; Models, Molecular; Phospholipids; Protein Structure, Tertiary; Recombinant Proteins; SEC Translocation Channels; SecA Proteins; Temperature; Tryptophan

2003
Mutation of cysteine 214 in Gi1 alpha subunit abolishes its endogenous GTPase activity.
    The Biochemical journal, 2004, May-01, Volume: 379, Issue:Pt 3

    Topics: Adenosine Diphosphate; Adenylyl Cyclases; Alanine; Amino Acid Substitution; Animals; CHO Cells; Colforsin; Cricetinae; Cyclic AMP; Cysteine; GTP-Binding Protein alpha Subunits, Gi-Go; Guanosine Triphosphate; Hydrolysis; Kinetics; Mutation; Pertussis Toxin; Protein Binding; Protein Subunits; RGS Proteins; Thermodynamics; Trypsin; Tryptophan

2004
Distinct natures of beryllium fluoride-bound, aluminum fluoride-bound, and magnesium fluoride-bound stable analogues of an ADP-insensitive phosphoenzyme intermediate of sarcoplasmic reticulum Ca2+-ATPase: changes in catalytic and transport sites during ph
    The Journal of biological chemistry, 2004, Apr-09, Volume: 279, Issue:15

    Topics: Adenosine Diphosphate; Adenosine Monophosphate; Aluminum Compounds; Animals; Beryllium; Biochemical Phenomena; Biochemistry; Calcimycin; Calcium; Calcium-Transporting ATPases; Catalytic Domain; Cell Membrane; Chelating Agents; Crystallography, X-Ray; Cytoplasm; Dose-Response Relationship, Drug; Fluorides; Hydrogen-Ion Concentration; Hydrolysis; Magnesium Compounds; Models, Chemical; Muscle, Skeletal; Phosphorylation; Protein Binding; Protein Conformation; Protein Structure, Tertiary; Rabbits; Sarcoplasmic Reticulum; Sarcoplasmic Reticulum Calcium-Transporting ATPases; Spectrometry, Fluorescence; Thapsigargin; Time Factors; Tryptophan; Vanadates

2004
Fluorescence and kinetic analysis of the SpoIIAB phosphorylation reaction, a key regulator of sporulation in Bacillus subtilis.
    Biochemistry, 2004, Mar-23, Volume: 43, Issue:11

    Topics: Adenosine Diphosphate; Adenosine Triphosphate; Bacillus subtilis; Bacterial Proteins; Binding Sites; Fluorescence Polarization; Kinetics; Ligands; Mutagenesis, Site-Directed; Phenylalanine; Phosphates; Phosphorylation; Spectrometry, Fluorescence; Spores, Bacterial; Tryptophan

2004
Preferential substrate binding orientation by the molecular chaperone HscA.
    The Journal of biological chemistry, 2004, Jul-02, Volume: 279, Issue:27

    Topics: Adenosine Diphosphate; Adenosine Triphosphatases; Adenosine Triphosphate; Animals; Bridged Bicyclo Compounds; Cysteine; Dose-Response Relationship, Drug; Escherichia coli; Escherichia coli Proteins; Fluorescent Dyes; HSP70 Heat-Shock Proteins; Iron-Sulfur Proteins; Kinetics; Microscopy, Fluorescence; Models, Chemical; Models, Molecular; Molecular Chaperones; Mutagenesis, Site-Directed; Mutation; Peptides; Protein Binding; Protein Isoforms; Protein Structure, Tertiary; Rats; Spectrometry, Fluorescence; Tryptophan

2004
Human deafness mutation of myosin VI (C442Y) accelerates the ADP dissociation rate.
    The Journal of biological chemistry, 2004, Jul-09, Volume: 279, Issue:28

    Topics: Actins; Adenosine Diphosphate; Adenosine Triphosphatases; Adenosine Triphosphate; Animals; Calcium; Deafness; Humans; Mice; Molecular Motor Proteins; Mutation, Missense; Myosin Heavy Chains; Protein Binding; Tryptophan

2004
Musajo Memorial Award Lecture: "Metabolism to function--an odyssey with tryptophan".
    Advances in experimental medicine and biology, 2003, Volume: 527

    Topics: Adenosine Diphosphate; Animals; History, 20th Century; Humans; Mixed Function Oxygenases; Tryptophan; Tryptophan Oxygenase

2003
An intermediate form of ADP-F-actin.
    The Journal of biological chemistry, 2005, Jan-14, Volume: 280, Issue:2

    Topics: Actins; Adenosine Diphosphate; Adenosine Triphosphate; Biopolymers; Fluorescence; Fungal Proteins; Hydrogen-Ion Concentration; Hydrolysis; Muscles; Mutation; Phosphates; Protein Structure, Quaternary; Time Factors; Tryptophan; Yeasts

2005
Does phosphate release limit the ATPases of soleus myofibrils? Evidence that (A)M. ADP.Pi states predominate on the cross-bridge cycle.
    Journal of muscle research and cell motility, 2004, Volume: 25, Issue:4-5

    Topics: Adenosine Diphosphate; Adenosine Triphosphatases; Adenosine Triphosphate; Animals; Calcium; Models, Biological; Muscle Contraction; Muscle, Skeletal; Myofibrils; Phosphates; Psoas Muscles; Rabbits; Temperature; Tryptophan

2004
The effect of F-actin on the relay helix position of myosin II, as revealed by tryptophan fluorescence, and its implications for mechanochemical coupling.
    Biochemistry, 2004, Dec-14, Volume: 43, Issue:49

    Topics: Actins; Actomyosin; Adenosine Diphosphate; Adenosine Triphosphate; Animals; Dictyostelium; Molecular Motor Proteins; Myosin Type II; Protein Binding; Protein Structure, Secondary; Protein Structure, Tertiary; Protozoan Proteins; Rabbits; Signal Transduction; Spectrometry, Fluorescence; Tryptophan

2004
The binding mechanism of the yeast F1-ATPase inhibitory peptide: role of catalytic intermediates and enzyme turnover.
    The Journal of biological chemistry, 2005, Mar-18, Volume: 280, Issue:11

    Topics: Adenosine Diphosphate; Adenosine Triphosphatases; Adenosine Triphosphate; ATPase Inhibitory Protein; Binding Sites; Biochemistry; Catalysis; Catalytic Domain; Dose-Response Relationship, Drug; Escherichia coli; Hydrolysis; Kinetics; Models, Biological; Models, Chemical; Protein Binding; Proteins; Saccharomyces cerevisiae; Spectrometry, Fluorescence; Time Factors; Tryptophan

2005
Structural basis for the changes in redox potential in the nitrogenase Phe135Trp Fe protein with MgADP Bound.
    Molecules and cells, 2004, Dec-31, Volume: 18, Issue:3

    Topics: Adenosine Diphosphate; Azotobacter vinelandii; Binding Sites; Catalysis; Ions; Iron-Sulfur Proteins; Magnesium; Models, Chemical; Models, Molecular; Models, Statistical; Nitrogenase; Oxidation-Reduction; Phenylalanine; Protein Binding; Protein Conformation; Tryptophan; X-Ray Diffraction

2004
Binding of six nucleotide cofactors to the hexameric helicase RepA protein of plasmid RSF1010. 1. Direct evidence of cooperative interactions between the nucleotide-binding sites of a hexameric helicase.
    Biochemistry, 2005, Mar-15, Volume: 44, Issue:10

    Topics: Adenosine Diphosphate; Adenosine Triphosphate; Binding Sites; Coenzymes; DNA Helicases; DNA Replication; DNA-Binding Proteins; Models, Chemical; ortho-Aminobenzoates; Plasmids; Protein Subunits; Spectrometry, Fluorescence; Thermodynamics; Trans-Activators; Tryptophan

2005
Examination of MgATP binding in a tryptophan-shift mutant of phosphofructokinase from Bacillus stearothermophilus.
    Archives of biochemistry and biophysics, 2005, Apr-01, Volume: 436, Issue:1

    Topics: Adenosine Diphosphate; Adenosine Triphosphate; Allosteric Site; Base Sequence; Binding Sites; Fructosephosphates; Genetic Variation; Geobacillus stearothermophilus; Mutation; Phosphoenolpyruvate; Phosphofructokinases; Spectrometry, Fluorescence; Tryptophan

2005
Correlation between conformational stability of the ternary enzyme-substrate complex and domain closure of 3-phosphoglycerate kinase.
    The FEBS journal, 2005, Volume: 272, Issue:8

    Topics: Adenosine Diphosphate; Adenosine Triphosphate; Animals; Calorimetry; Enzyme Stability; Fluorometry; Hot Temperature; Models, Molecular; Multiprotein Complexes; Muscles; Mutation; Phosphoglycerate Kinase; Protein Binding; Protein Denaturation; Protein Folding; Protein Structure, Tertiary; Structural Homology, Protein; Swine; Thermodynamics; Tryptophan; Yeasts

2005
Structural rearrangements in the active site of smooth-muscle myosin.
    Biophysical journal, 2005, Volume: 89, Issue:3

    Topics: Acrylamide; Actins; Adenosine Diphosphate; Adenosine Triphosphatases; Adenosine Triphosphate; Animals; Binding Sites; Cell Line; Chickens; Crystallography, X-Ray; Dictyostelium; DNA, Complementary; Dose-Response Relationship, Drug; Fluorescence Resonance Energy Transfer; Hydrolysis; Insecta; Kinetics; Models, Chemical; Models, Molecular; Mutagenesis, Site-Directed; Mutation; Myosin Type II; Myosins; Nucleotides; Protein Conformation; Protein Structure, Tertiary; Temperature; Time Factors; Tryptophan

2005
Nucleotides regulate the conformational state of the small terminase subunit from bacteriophage lambda: implications for the assembly of a viral genome-packaging motor.
    Biochemistry, 2005, Jul-19, Volume: 44, Issue:28

    Topics: Acrylamide; Adenosine Diphosphate; Adenosine Triphosphate; Azides; Bacteriophage lambda; Binding, Competitive; Dimerization; DNA-Binding Proteins; DNA, Viral; Endodeoxyribonucleases; Genome, Viral; Molecular Motor Proteins; Photoaffinity Labels; Protein Binding; Protein Conformation; Protein Subunits; Sequence Deletion; Spectrometry, Fluorescence; Tryptophan; Viral Proteins; Virus Assembly

2005
Functional characterization and ATP-induced dimerization of the isolated ABC-domain of the haemolysin B transporter.
    Biochemistry, 2005, Jul-19, Volume: 44, Issue:28

    Topics: Adenosine Diphosphate; Adenosine Triphosphatases; Adenosine Triphosphate; Alanine; ATP-Binding Cassette Transporters; Bacterial Proteins; Buffers; Carrier Proteins; Dimerization; Escherichia coli Proteins; Hemolysin Proteins; Histidine; Hydrogen-Ion Concentration; Hydrolysis; Models, Chemical; Mutagenesis, Site-Directed; Peptide Fragments; Protein Binding; Protein Structure, Tertiary; Tryptophan; Tyrosine

2005
The kinetic study of arginine kinase from the sea cucumber Stichopus japonicus with 5,5'-dithiobis-(2-nitrobenzoic acid).
    International journal of biological macromolecules, 2005, Volume: 36, Issue:3

    Topics: Adenosine Diphosphate; Adenosine Triphosphate; Animals; Arginine Kinase; Binding Sites; Catalysis; Cysteine; Dimerization; Dithionitrobenzoic Acid; Dithiothreitol; Dose-Response Relationship, Drug; Kinetics; Magnesium; Models, Chemical; Protein Binding; Protein Conformation; Protein Structure, Tertiary; Sea Cucumbers; Spectrometry, Fluorescence; Substrate Specificity; Sulfhydryl Compounds; Time Factors; Tryptophan

2005
Removal of tightly bound ADP induces distinct structural changes of the two tryptophan-containing regions of the ncd motor domain.
    Journal of biochemistry, 2005, Volume: 138, Issue:1

    Topics: Adenosine Diphosphate; Adenosine Triphosphatases; Animals; Binding Sites; Circular Dichroism; Drosophila Proteins; Kinesins; Models, Molecular; Mutation; Phenylalanine; Protein Structure, Tertiary; Spectrometry, Fluorescence; Spectrophotometry, Ultraviolet; Tryptophan; Tubulin; Tyrosine

2005
Did protein kinase regulatory mechanisms evolve through elaboration of a simple structural component?
    Journal of molecular biology, 2005, Sep-02, Volume: 351, Issue:5

    Topics: Adenosine Diphosphate; Amino Acid Motifs; Amino Acid Sequence; Animals; Binding Sites; Databases, Protein; Evolution, Molecular; Glutamic Acid; Histidine; Humans; Models, Genetic; Models, Molecular; Molecular Conformation; Molecular Sequence Data; Monte Carlo Method; Protein Conformation; Protein Kinases; Protein Structure, Tertiary; Sequence Homology, Amino Acid; Tryptophan; Tyrosine; Water

2005
Docking and rolling, a model of how the mitotic motor Eg5 works.
    The Journal of biological chemistry, 2005, Oct-21, Volume: 280, Issue:42

    Topics: Adenosine Diphosphate; Adenosine Triphosphatases; Adenosine Triphosphate; Binding Sites; Carboxylic Acids; Catalytic Domain; Cysteine; Dose-Response Relationship, Drug; Evolution, Molecular; Fluorescence Resonance Energy Transfer; Humans; Kinesins; Kinetics; Microtubules; Mitosis; Models, Biological; Models, Chemical; Models, Molecular; Mutation; Protein Binding; Protein Structure, Tertiary; Tryptophan

2005
Characterization of archaeal group II chaperonin-ADP-metal fluoride complexes: implications that group II chaperonins operate as a "two-stroke engine".
    The Journal of biological chemistry, 2005, Dec-02, Volume: 280, Issue:48

    Topics: Adenosine Diphosphate; Adenosine Triphosphatases; Aluminum Compounds; Archaea; Archaeal Proteins; Beryllium; Chaperonin Containing TCP-1; Chaperonins; Cytosol; Fluorides; Green Fluorescent Proteins; Microscopy, Electron; Models, Biological; Nucleotides; Peptide Hydrolases; Protein Binding; Protein Conformation; Protein Folding; Protein Structure, Tertiary; Scattering, Radiation; Spectrometry, Fluorescence; Temperature; Thermococcus; Tryptophan; X-Rays

2005
The nucleotide-binding site of the Escherichia coli DnaC protein: molecular topography of DnaC protein-nucleotide cofactor complexes.
    Cell biochemistry and biophysics, 2005, Volume: 43, Issue:3

    Topics: Adenosine Diphosphate; Adenosine Triphosphate; Binding Sites; Escherichia coli; Escherichia coli Proteins; Hydrophobic and Hydrophilic Interactions; Magnesium Chloride; ortho-Aminobenzoates; Protein Conformation; Spectrometry, Fluorescence; Tryptophan; Tyrosine

2005
Reversal of ADP-mediated aggregation of adenosine kinase by cyclophilin leads to its reactivation.
    Biochemistry, 2006, Jan-10, Volume: 45, Issue:1

    Topics: Adenosine Diphosphate; Adenosine Kinase; Adenosine Monophosphate; Animals; Base Sequence; Binding Sites; Cyclophilins; Kinetics; Leishmania donovani; Spectrometry, Fluorescence; Time Factors; Tryptophan

2006
Allosteric regulation of Hsp70 chaperones by a proline switch.
    Molecular cell, 2006, Feb-03, Volume: 21, Issue:3

    Topics: Adenosine Diphosphate; Adenosine Triphosphate; Allosteric Regulation; Amino Acid Substitution; Animals; Binding Sites; HSP70 Heat-Shock Proteins; Hydrogen Bonding; Models, Molecular; Mutagenesis, Site-Directed; Proline; Protein Conformation; Tryptophan

2006
Ligand-induced effects on pyruvate dehydrogenase kinase isoform 2.
    The Journal of biological chemistry, 2006, May-05, Volume: 281, Issue:18

    Topics: Adenosine Diphosphate; Adenosine Triphosphate; Dimerization; Down-Regulation; Glutathione Transferase; Humans; Ligands; Molecular Conformation; Mutation; Protein Binding; Protein Kinases; Protein Serine-Threonine Kinases; Pyruvate Dehydrogenase Acetyl-Transferring Kinase; Pyruvic Acid; Tryptophan

2006
Conformational and functional characterization of trapped complexes of the P-glycoprotein multidrug transporter.
    The Biochemical journal, 2006, Oct-15, Volume: 399, Issue:2

    Topics: Acrylamide; Adenosine Diphosphate; Adenosine Triphosphate; Animals; ATP Binding Cassette Transporter, Subfamily B, Member 1; Cesium; CHO Cells; Cricetinae; Cricetulus; Fluorescence; Iodine; Kinetics; Multidrug Resistance-Associated Proteins; Protein Conformation; Trinitrobenzenes; Tryptophan

2006
Reversible movement of switch 1 loop of myosin determines actin interaction.
    The EMBO journal, 2007, Jan-10, Volume: 26, Issue:1

    Topics: Actins; Adenosine Diphosphate; Adenosine Triphosphate; Animals; Cryoelectron Microscopy; Crystallography, X-Ray; Dictyostelium; Magnesium; Models, Chemical; Models, Molecular; Myosins; Protein Binding; Protein Conformation; Protein Structure, Tertiary; Tryptophan

2007
A mobile tryptophan is the intrinsic charge transfer donor in a flavoenzyme essential for nikkomycin antibiotic biosynthesis.
    Biochemistry, 2007, Jan-23, Volume: 46, Issue:3

    Topics: Adenosine Diphosphate; Aminoglycosides; Binding Sites; Crystallization; Flavin-Adenine Dinucleotide; Flavoproteins; Mutation; Picolinic Acids; Tryptophan

2007
Studies of nucleotide binding to the catalytic sites of Escherichia coli betaY331W-F1-ATPase using fluorescence quenching.
    Proceedings of the National Academy of Sciences of the United States of America, 2007, Mar-13, Volume: 104, Issue:11

    Topics: Adenosine Diphosphate; Adenosine Triphosphate; Binding Sites; Catalytic Domain; Escherichia coli; Kinetics; Ligands; Magnesium; Mutation; Nucleotides; Phosphates; Protein Binding; Proton-Translocating ATPases; Spectrometry, Fluorescence; Tryptophan

2007
The association of actin and myosin in the presence of gamma-amido-ATP proceeds mainly via a complex with myosin in the closed conformation.
    Biochemistry, 2007, Aug-21, Volume: 46, Issue:33

    Topics: Actins; Adenosine Diphosphate; Adenylyl Imidodiphosphate; Animals; Dictyostelium; Fluorescence; Myosins; ortho-Aminobenzoates; Protein Conformation; Spectrometry, Fluorescence; Tryptophan

2007
Functional evaluation of conserved basic residues in human phosphomevalonate kinase.
    Biochemistry, 2007, Oct-23, Volume: 46, Issue:42

    Topics: Adenosine Diphosphate; Adenosine Triphosphate; Amino Acid Sequence; Amino Acids, Basic; Binding Sites; Catalysis; Conserved Sequence; Escherichia coli; Humans; Hydrogen-Ion Concentration; Kinetics; Molecular Sequence Data; Mutation; Phosphotransferases (Phosphate Group Acceptor); Recombinant Proteins; Sequence Homology, Amino Acid; Spectrometry, Fluorescence; Transformation, Genetic; Tryptophan

2007
Identification of the betaTP site in the x-ray structure of F1-ATPase as the high-affinity catalytic site.
    Proceedings of the National Academy of Sciences of the United States of America, 2007, Nov-20, Volume: 104, Issue:47

    Topics: Adenosine Diphosphate; Adenosine Triphosphate; Catalytic Domain; Crystallography, X-Ray; Lysine; Magnesium; Models, Molecular; Mutation; Protein Binding; Protein Structure, Quaternary; Protein Subunits; Proton-Translocating ATPases; Tryptophan

2007
Critical role of specific ions for ligand-induced changes regulating pyruvate dehydrogenase kinase isoform 2.
    Biochemistry, 2008, Feb-26, Volume: 47, Issue:8

    Topics: Adenosine Diphosphate; Adenosine Triphosphate; Binding Sites; Fluorescence; Humans; Ions; Ligands; Magnesium Chloride; Models, Molecular; Phosphates; Potassium; Protein Binding; Protein Conformation; Protein Serine-Threonine Kinases; Pyruvate Dehydrogenase Acetyl-Transferring Kinase; Pyruvic Acid; Quaternary Ammonium Compounds; Tryptophan

2008
Photophysical properties of popular fluorescent adenosine nucleotide analogs used in enzyme mechanism probing.
    Archives of biochemistry and biophysics, 2008, May-01, Volume: 473, Issue:1

    Topics: Adenosine Diphosphate; Adenosine Triphosphatases; Adenosine Triphosphate; Animals; Endopeptidase Clp; Escherichia coli Proteins; Fluorescence Polarization; Fluorescent Dyes; Heat-Shock Proteins; HSP70 Heat-Shock Proteins; HSP90 Heat-Shock Proteins; Kinetics; Nucleic Acid Conformation; ortho-Aminobenzoates; Rabbits; Thermus thermophilus; Tryptophan

2008
A mutation (R826W) in nucleotide-binding domain 1 of ABCC8 reduces ATPase activity and causes transient neonatal diabetes.
    EMBO reports, 2008, Volume: 9, Issue:7

    Topics: Adenosine Diphosphate; Adenosine Triphosphatases; Adenosine Triphosphate; Amino Acid Sequence; Amino Acid Substitution; Arginine; ATP-Binding Cassette Transporters; Child; Diabetes Mellitus; Humans; Infant, Newborn; Infant, Newborn, Diseases; Ion Channel Gating; Kinetics; Male; Molecular Sequence Data; Mutant Proteins; Mutation; Potassium Channels, Inwardly Rectifying; Protein Structure, Secondary; Protein Structure, Tertiary; Receptors, Drug; Sulfonylurea Receptors; Tryptophan

2008
Structural analysis of the human Rad51 protein-DNA complex filament by tryptophan fluorescence scanning analysis: transmission of allosteric effects between ATP binding and DNA binding.
    Journal of molecular biology, 2008, Nov-14, Volume: 383, Issue:3

    Topics: Adenosine Diphosphate; Adenosine Triphosphate; Allosteric Regulation; Amino Acid Substitution; Animals; Circular Dichroism; DNA; Fluorescence Resonance Energy Transfer; Humans; Models, Molecular; Protein Binding; Protein Engineering; Protein Structure, Tertiary; Protein Subunits; Rad51 Recombinase; Spectrometry, Fluorescence; Tryptophan

2008
Spectroscopic and crystallographic studies of the mutant R416W give insight into the nucleotide binding traits of subunit B of the A1Ao ATP synthase.
    Proteins, 2009, Volume: 75, Issue:4

    Topics: Adenosine Diphosphate; Adenosine Triphosphate; Amino Acid Substitution; Archaeal Proteins; Crystallography, X-Ray; Models, Molecular; Nucleotides; Protein Subunits; Proton-Translocating ATPases; Spectrometry, Fluorescence; Tryptophan

2009
Functional energetic landscape in the allosteric regulation of muscle pyruvate kinase. 2. Fluorescence study.
    Biochemistry, 2009, Oct-13, Volume: 48, Issue:40

    Topics: Adenosine Diphosphate; Allosteric Regulation; Animals; Energy Metabolism; Entropy; Enzyme Activation; Ligands; Models, Chemical; Muscle, Skeletal; Phenylalanine; Phosphoenolpyruvate; Protein Binding; Protein Structure, Tertiary; Pyruvate Kinase; Rabbits; Spectrometry, Fluorescence; Tryptophan

2009
Does Interaction between the Motor and Regulatory Domains of the Myosin Head Occur during ATPase Cycle? Evidence from Thermal Unfolding Studies on Myosin Subfragment 1.
    PloS one, 2015, Volume: 10, Issue:9

    Topics: Adenosine Diphosphate; Adenosine Triphosphatases; Animals; Calorimetry, Differential Scanning; Fluorescence; Humans; Models, Molecular; Myosin Subfragments; Protein Binding; Protein Denaturation; Protein Structure, Tertiary; Protein Unfolding; Rabbits; Temperature; Tryptophan

2015
Muscle biopsies from human muscle diseases with myopathic pathology reveal common alterations in mitochondrial function.
    Journal of neurochemistry, 2016, Volume: 138, Issue:1

    Topics: Adenosine Diphosphate; Adenosine Triphosphate; Adolescent; Adult; Aged; Aspartate Aminotransferases; Biopsy; Child; Citrate (si)-Synthase; Female; Humans; Malate Dehydrogenase; Male; Middle Aged; Mitochondria; Mitochondrial Proteins; Models, Molecular; Multienzyme Complexes; Muscles; Muscular Diseases; Superoxide Dismutase; Tryptophan; Young Adult

2016