thymine and pentoxyl

thymine has been researched along with pentoxyl in 39 studies

Research

Studies (39)

TimeframeStudies, this research(%)All Research%
pre-19909 (23.08)18.7374
1990's10 (25.64)18.2507
2000's6 (15.38)29.6817
2010's13 (33.33)24.3611
2020's1 (2.56)2.80

Authors

AuthorsStudies
Levy, DD; Teebor, GW1
Herrala, AM; Vilpo, JA1
Choy, HA; Geiduschek, EP; Romeo, JM1
Cadet, J; Cummings, A; Frenkel, K; Solomon, J; Steinberg, JJ; Teebor, GW1
Schuchmann, MN; Steenken, S; von Sonntag, C; Wroblewski, J1
Beemer, FA; Berger, R; de Bree, PK; Duran, M; Penders, TJ; Stoker-de Vries, SA; van der Woude, JK; Wadman, SK; Weits-Binnerts, JJ1
Daney de Marcillac, G; Herzog, M; Soyer, MO1
Warren, RA1
Bjelland, S; Eftedal, I; Eide, L; Seeberg, E; Stote, R; Time, RW; Volden, G1
Castro, GD; Castro, JA; Stamato, CJ1
Vilpo, JA; Vilpo, LM1
Galeone, A; Geiduschek, EP; Grove, A; Mayol, L1
Mazurek, M; Sowers, LC1
Castro, GD; Castro, JA; Díaz Gómez, MI1
Ambulos, NP; Friedberg, EC; Malanoski, G; Radany, EH; Yasbin, RE1
Cezanne, I; Christensen, E; Faurholt Pedersen, V; Hørlyk, H; Kjaergaard, S; Van Gennip, AH; van Kuilenburg, AB; Vreken, P1
Honsho, A; Ide, H; Kobayashi, M; Masaoka, A; Ohyama, Y; Terato, H1
Grove, A; Saavedra, TC1
Burdzy, A; Lin, SS; Liu, P; Rogstad, DK; Sowers, LC1
Izuta, S; Kasama, T; Ono, A1
Grove, A1
KALLEN, RG; MARMUR, J; SIMON, M1
ABBOTT, MT; FINK, RM; KADNER, RJ1
Akamatsu, K; Fujii, K; Yokoya, A1
Sugiyama, H; Takao, M; Yasui, A; Yonei, S; Yonekura, S; Zhang, QM1
Cheng, X; Hashimoto, H; Zhang, X1
Couvé, S; Grin, I; Henriot, V; Ishchenko, AA; Moréra, S; Saparbaev, M; Vigouroux, A1
Madugundu, GS; Park, Y; Peoples, AR; Sanche, L; Wagner, JR1
Foksinski, M; Gackowski, D; Olinski, R; Zarakowska, E1
Brandmayr, C; Carell, T; Eisen, D; Hackner, B; Kashiwazaki, G; Kosmatchev, O; Kotljarova, O; Laube, SK; Leonhardt, H; Michalakis, S; Müller, M; Müller, U; Pfaffeneder, T; Raddaoui, N; Schär, P; Schiesser, S; Schuermann, D; Spada, F; Spruijt, CG; Steigenberger, B; Steinbacher, J; Truss, M; Vermeulen, M; Wagner, M1
Bullard, W; Liu, S; Lopes da Rosa-Spiegler, J; Sabatini, R; Wang, Y1
Dahl, JA; Klungland, A; Robertson, AB1
Balasubramanian, S; Hardisty, RE; Kawasaki, F; Sahakyan, AB1
Coey, CT; Drohat, AC; Malik, SS; Pozharski, E; Varney, KM1
Ding, J; Li, W; Zhang, T1
Aksimentiev, A; Carson, S; Wanunu, M; Weigele, PR; Wilson, J1
Bullard, W; Cliffe, L; Sabatini, R; Wang, P; Wang, Y1
Foksinski, M; Gackowski, D; Gawronski, M; Modrzejewska, M; Olinski, R; Rzeszowska-Wolny, J; Skonieczna, M; Starczak, M; Zarakowska, E1
Gackowska, L; Gackowski, D; Labejszo, A1

Reviews

2 review(s) available for thymine and pentoxyl

ArticleYear
Modified bases in bacteriophage DNAs.
    Annual review of microbiology, 1980, Volume: 34

    Topics: 2-Aminopurine; 5-Methylcytosine; Adenine; Bacteriophages; Base Composition; Chemical Phenomena; Chemistry; Chemistry, Physical; Cytosine; Deoxyribonucleases; DNA Replication; DNA, Viral; Nucleic Acid Conformation; Pentoxyl; Substrate Specificity; Templates, Genetic; Thymine; Transcription, Genetic; Uracil

1980
Are 8-oxoguanine (8-oxoGua) and 5-hydroxymethyluracil (5-hmUra) oxidatively damaged DNA bases or transcription (epigenetic) marks?
    Mutation research. Genetic toxicology and environmental mutagenesis, 2014, Volume: 764-765

    Topics: Animals; Brain; Cell Nucleus; Chromatin; Cytidine Deaminase; DNA; DNA Damage; DNA-Binding Proteins; Epigenesis, Genetic; Gene Expression Regulation; Genetic Markers; Guanine; Liver; Mixed Function Oxygenases; Oxidation-Reduction; Pentoxyl; Proto-Oncogene Proteins; Swine; Thymine; Thymus Gland

2014

Other Studies

37 other study(ies) available for thymine and pentoxyl

ArticleYear
Site directed substitution of 5-hydroxymethyluracil for thymine in replicating phi X-174am3 DNA via synthesis of 5-hydroxymethyl-2'-deoxyuridine-5'-triphosphate.
    Nucleic acids research, 1991, Jun-25, Volume: 19, Issue:12

    Topics: Bacteriophages; Base Sequence; Cloning, Molecular; Codon; Deoxyuracil Nucleotides; DNA Replication; DNA-Directed DNA Polymerase; DNA, Viral; Escherichia coli; Molecular Sequence Data; Molecular Structure; Mutagenesis, Site-Directed; Pentoxyl; Spheroplasts; Thymine; Transfection

1991
Template-primer activity of 5-(hydroxymethyl)uracil-containing DNA for prokaryotic and eukaryotic DNA and RNA polymerases.
    Biochemistry, 1989, Oct-17, Volume: 28, Issue:21

    Topics: Bacillus subtilis; Bacteriophages; DNA-Directed DNA Polymerase; DNA-Directed RNA Polymerases; DNA, Viral; Escherichia coli; Humans; Leukemia; Micrococcus; Pentoxyl; Templates, Genetic; Thymine; Transcription, Genetic; Tumor Cells, Cultured; Uracil

1989
Activity of a phage-modified RNA polymerase at hybrid promoters. Effects of substituting thymine for hydroxymethyluracil in a phage SP01 middle promoter.
    Journal of molecular biology, 1986, Sep-05, Volume: 191, Issue:1

    Topics: Bacillus subtilis; Bacteriophages; Binding Sites; DNA-Directed RNA Polymerases; Nucleic Acid Hybridization; Pentoxyl; Promoter Regions, Genetic; Recombination, Genetic; Thymine; Transcription, Genetic

1986
Quantitative determination of the 5-(hydroxymethyl)uracil moiety in the DNA of gamma-irradiated cells.
    Biochemistry, 1985, Aug-13, Volume: 24, Issue:17

    Topics: Acetylation; Chromatography, High Pressure Liquid; DNA; DNA, Bacterial; DNA, Neoplasm; Escherichia coli; Gamma Rays; HeLa Cells; Humans; Magnetic Resonance Spectroscopy; Mass Spectrometry; Pentoxyl; Thymine; Uracil

1985
Site of OH radical attack on dihydrouracil and some of its methyl derivatives.
    International journal of radiation biology and related studies in physics, chemistry, and medicine, 1984, Volume: 46, Issue:3

    Topics: Ferricyanides; Hydroxides; Hydroxyl Radical; Indicators and Reagents; Pentoxyl; Pulse Radiolysis; Radiochemistry; Tetramethylphenylenediamine; Tetranitromethane; Thymine; Uracil

1984
Dihydropyrimidine dehydrogenase deficiency leading to thymine-uraciluria. An inborn error of pyrimidine metabolism.
    Clinica chimica acta; international journal of clinical chemistry, 1984, Aug-31, Volume: 141, Issue:2-3

    Topics: Adolescent; Child; Child, Preschool; Chromatography, Thin Layer; Dihydrouracil Dehydrogenase (NADP); Female; Humans; Leukocytes; Male; Mass Spectrometry; Oxidoreductases; Pentoxyl; Purine-Pyrimidine Metabolism, Inborn Errors; Thymine; Uracil

1984
A high level of thymine replacement by 5-hydroxymethyluracil in nuclear DNA of the primitive dinoflagellate Prorocentrum micans E.
    European journal of cell biology, 1982, Volume: 27, Issue:2

    Topics: Animals; Base Composition; Centrifugation, Density Gradient; Cytosine; Dinoflagellida; DNA; Guanine; Nucleic Acid Denaturation; Pentoxyl; Thymine; Uracil

1982
Oxidation of thymine to 5-formyluracil in DNA: mechanisms of formation, structural implications, and base excision by human cell free extracts.
    Biochemistry, 1995, Nov-14, Volume: 34, Issue:45

    Topics: Base Composition; Cell Extracts; Chromatography, High Pressure Liquid; DNA; DNA Glycosylases; DNA Repair; Humans; Kinetics; Leukocytes, Mononuclear; Molecular Structure; Mutagenesis; N-Glycosyl Hydrolases; Oxidation-Reduction; Pentoxyl; Photolysis; Thymine; Ultraviolet Rays; Uracil; Vitamin K

1995
5-methylcytosine attack by free radicals arising from bromotrichloromethane in a model system: structures of reaction products.
    Free radical biology & medicine, 1994, Volume: 17, Issue:5

    Topics: 5-Methylcytosine; Aerobiosis; Anaerobiosis; Bromotrichloromethane; Cytosine; DNA; Free Radicals; Gas Chromatography-Mass Spectrometry; Models, Chemical; Pentoxyl; Thymine

1994
Restriction, methylation and ligation of 5-hydroxymethyluracil-containing DNA.
    Mutation research, 1995, Volume: 316, Issue:3

    Topics: Bacillus Phages; DNA Damage; DNA Ligases; DNA Restriction Enzymes; DNA, Viral; Hydrolysis; Kinetics; Methylation; Methyltransferases; Oxidation-Reduction; Oxidative Stress; Pentoxyl; Site-Specific DNA-Methyltransferase (Adenine-Specific); Substrate Specificity; Thymine; Viral Proteins

1995
On the connection between inherent DNA flexure and preferred binding of hydroxymethyluracil-containing DNA by the type II DNA-binding protein TF1.
    Journal of molecular biology, 1996, Jul-12, Volume: 260, Issue:2

    Topics: Bacillus Phages; Base Sequence; Binding Sites; DNA Probes; DNA-Binding Proteins; DNA, Viral; Electrophoresis, Polyacrylamide Gel; Escherichia coli; Molecular Sequence Data; Nucleic Acid Conformation; Oligodeoxyribonucleotides; Pentoxyl; Protein Binding; Thymine; Viral Proteins

1996
The paradoxical influence of thymine analogues on restriction endonuclease cleavage of oligodeoxynucleotides.
    Biochemistry, 1996, Sep-03, Volume: 35, Issue:35

    Topics: Binding Sites; Deoxyribonucleases, Type II Site-Specific; Electrophoresis, Polyacrylamide Gel; Fluoresceins; Fluorescence; Fluorescent Dyes; Hydrolysis; Kinetics; Molecular Structure; Oligodeoxyribonucleotides; Pentoxyl; Thymine; Uracil

1996
DNA bases attack by reactive metabolites produced during carbon tetrachloride biotransformation and promotion of liver microsomal lipid peroxidation.
    Research communications in molecular pathology and pharmacology, 1997, Volume: 95, Issue:3

    Topics: Animals; Biotransformation; Carbon Tetrachloride; Cytosine; DNA Adducts; DNA Damage; Guanine; Lipid Peroxidation; Male; Microsomes, Liver; Pentoxyl; Pyrimidines; Rats; Rats, Sprague-Dawley; Thiobarbituric Acid Reactive Substances; Thymine

1997
Transfection enhancement in Bacillus subtilis displays features of a novel DNA repair pathway. I: DNA base and nucleolytic specificity.
    Mutation research, 1997, Volume: 384, Issue:2

    Topics: Bacillus subtilis; Bacteriophages; Base Composition; Deoxyribonuclease (Pyrimidine Dimer); DNA Glycosylases; DNA Repair; DNA, Bacterial; Endodeoxyribonucleases; Escherichia coli Proteins; N-Glycosyl Hydrolases; Pentoxyl; Pyrimidines; Substrate Specificity; Thymine; Transfection; Ultraviolet Rays; Uracil-DNA Glycosidase

1997
Clinical variability in three Danish patients with dihydropyrimidine dehydrogenase deficiency all homozygous for the same mutation.
    Journal of inherited metabolic disease, 1998, Volume: 21, Issue:3

    Topics: Cell Line, Transformed; Cells, Cultured; Child; Child, Preschool; Dihydrouracil Dehydrogenase (NADP); Female; Homozygote; Humans; Infant; Male; Mutation; Netherlands; Oxidoreductases; Pentoxyl; Thymine; Uracil

1998
Enzymatic repair of 5-formyluracil. I. Excision of 5-formyluracil site-specifically incorporated into oligonucleotide substrates by alka protein (Escherichia coli 3-methyladenine DNA glycosylase II).
    The Journal of biological chemistry, 1999, Aug-27, Volume: 274, Issue:35

    Topics: Adenine; Base Pair Mismatch; DNA Damage; DNA Glycosylases; DNA Repair; Escherichia coli; Guanine; Kinetics; Magnetic Resonance Spectroscopy; Methylnitronitrosoguanidine; Molecular Structure; N-Glycosyl Hydrolases; Oligodeoxyribonucleotides; Pentoxyl; Substrate Specificity; Thymine; Uracil

1999
The role of surface-exposed lysines in wrapping DNA about the bacterial histone-like protein HU.
    Biochemistry, 2002, Jun-18, Volume: 41, Issue:24

    Topics: Amino Acid Sequence; Aspartic Acid; Bacillus Phages; Bacillus subtilis; Bacterial Proteins; Binding Sites; Conserved Sequence; DNA-Binding Proteins; DNA, Viral; Histones; Kinetics; Lysine; Molecular Sequence Data; Nucleic Acid Conformation; Pentoxyl; Sequence Homology, Amino Acid; Thymine; Viral Proteins

2002
Endogenous DNA lesions can inhibit the binding of the AP-1 (c-Jun) transcription factor.
    Biochemistry, 2002, Jun-25, Volume: 41, Issue:25

    Topics: Adenine; Base Pair Mismatch; Binding, Competitive; Cytosine; DNA Damage; DNA Glycosylases; DNA-Binding Proteins; Humans; N-Glycosyl Hydrolases; Nucleic Acid Heteroduplexes; Oligonucleotides; Pentoxyl; Protein Binding; Proto-Oncogene Proteins c-jun; Thymine; Transcription Factor AP-1; Uracil; Uracil-DNA Glycosidase

2002
Binding activity of replication protein A to single-stranded DNA containing oxidized pyrimidine base.
    Nucleic acids research. Supplement (2001), 2001, Issue:1

    Topics: Animals; Base Sequence; Binding Sites; DNA Damage; DNA-Binding Proteins; DNA, Single-Stranded; Oligonucleotides; Oxidation-Reduction; Pentoxyl; Pyrimidines; Replication Protein A; Thymine; Uracil; Xenopus laevis

2001
Surface salt bridges modulate DNA wrapping by the type II DNA-binding protein TF1.
    Biochemistry, 2003, Jul-29, Volume: 42, Issue:29

    Topics: Alanine; Anions; Aspartic Acid; Bacillus subtilis; Bacteriophages; Cations; Cross-Linking Reagents; Dimerization; DNA; DNA-Binding Proteins; Electrophoresis, Agar Gel; Electrophoresis, Polyacrylamide Gel; Glutamic Acid; Glutaral; Ions; Kinetics; Lysine; Models, Molecular; Mutation; Pentoxyl; Plasmids; Protein Binding; Salts; Thermotoga maritima; Thymine; Viral Proteins

2003
The new occurrence of a new pyrimidine base replacing thymine in a bacteriophage DNA:5-hydroxymethyl uracil.
    Journal of molecular biology, 1962, Volume: 5

    Topics: Bacteriophages; DNA; DNA, Viral; Pentoxyl; Pyrimidines; Thymine; Uracil

1962
CONVERSION OF THYMINE TO 5-HYDROXYMETHYLURACIL IN A CELL-FREE SYSTEM.
    The Journal of biological chemistry, 1964, Volume: 239

    Topics: Autoradiography; Cell-Free System; Chromatography; Dialysis; Glutathione; Metabolism; NADP; Neurospora; Pentoxyl; Pharmacology; Pyrimidines; Renal Dialysis; Research; Thymine; Uracil

1964
Qualitative and quantitative analyses of the decomposition products that arise from the exposure of thymine to monochromatic ultrasoft X rays and 60Co gamma rays in the solid state.
    Radiation research, 2004, Volume: 161, Issue:4

    Topics: Calibration; Chromatography, High Pressure Liquid; Cobalt Radioisotopes; DNA; DNA Damage; DNA Repair; Dose-Response Relationship, Radiation; Gamma Rays; Models, Chemical; Nitrogen; Oxygen; Pentoxyl; Photons; Spectrophotometry; Synchrotrons; Thymine; Time Factors; Uracil; X-Rays

2004
DNA glycosylase activities for thymine residues oxidized in the methyl group are functions of the hNEIL1 and hNTH1 enzymes in human cells.
    DNA repair, 2005, Jan-02, Volume: 4, Issue:1

    Topics: Cloning, Molecular; Deoxyribonuclease (Pyrimidine Dimer); DNA Glycosylases; DNA Repair; DNA, Complementary; Escherichia coli; Humans; Hydrogen Peroxide; Mutation; Oligonucleotides; Pentoxyl; Thymine; Uracil

2005
Excision of thymine and 5-hydroxymethyluracil by the MBD4 DNA glycosylase domain: structural basis and implications for active DNA demethylation.
    Nucleic acids research, 2012, Sep-01, Volume: 40, Issue:17

    Topics: Animals; Base Pair Mismatch; DNA; DNA Glycosylases; Endodeoxyribonucleases; Mice; Models, Molecular; Pentoxyl; Protein Structure, Tertiary; Thymine

2012
Biochemical and structural characterization of the glycosylase domain of MBD4 bound to thymine and 5-hydroxymethyuracil-containing DNA.
    Nucleic acids research, 2012, Volume: 40, Issue:19

    Topics: 5-Methylcytosine; Bacteria; Catalytic Domain; Cytosine; DNA; Endodeoxyribonucleases; Humans; Models, Molecular; Pentoxyl; Protein Structure, Tertiary; Substrate Specificity; Thymine; Thymine DNA Glycosylase

2012
Side-by-side comparison of DNA damage induced by low-energy electrons and high-energy photons with solid TpTpT trinucleotide.
    The journal of physical chemistry. B, 2013, Sep-05, Volume: 117, Issue:35

    Topics: Chromatography, High Pressure Liquid; DNA Damage; Electrons; Oligonucleotides; Pentoxyl; Photons; Radiation, Ionizing; Tandem Mass Spectrometry; Thymine; Uracil

2013
Tet oxidizes thymine to 5-hydroxymethyluracil in mouse embryonic stem cell DNA.
    Nature chemical biology, 2014, Volume: 10, Issue:7

    Topics: 5-Methylcytosine; Animals; Base Sequence; Carbon Isotopes; Chromatin Assembly and Disassembly; Chromatography, Liquid; Cytosine; Dioxygenases; DNA; DNA-Binding Proteins; Embryonic Stem Cells; Gene Expression; Mice; Molecular Sequence Data; Oxidation-Reduction; Pentoxyl; Protein Binding; Proto-Oncogene Proteins; Spectrometry, Mass, Electrospray Ionization; Thymine; Transcription Factors

2014
Identification of the glucosyltransferase that converts hydroxymethyluracil to base J in the trypanosomatid genome.
    The Journal of biological chemistry, 2014, Jul-18, Volume: 289, Issue:29

    Topics: DNA, Protozoan; Epigenesis, Genetic; Gene Knockout Techniques; Genome, Protozoan; Glucosides; Glucosyltransferases; Mutagenesis, Site-Directed; Pentoxyl; Protozoan Proteins; RNA Interference; RNA, Messenger; RNA, Protozoan; Substrate Specificity; Thymine; Trypanosoma brucei brucei; Uracil

2014
DNA metabolism: bases of DNA repair and regulation.
    Nature chemical biology, 2014, Volume: 10, Issue:7

    Topics: Animals; Dioxygenases; DNA; DNA-Binding Proteins; Embryonic Stem Cells; Pentoxyl; Proto-Oncogene Proteins; Thymine

2014
Selective Chemical Labeling of Natural T Modifications in DNA.
    Journal of the American Chemical Society, 2015, Jul-29, Volume: 137, Issue:29

    Topics: Base Sequence; DNA; Models, Molecular; Nucleic Acid Conformation; Oligodeoxyribonucleotides; Pentoxyl; Thymine; Uracil

2015
Thymine DNA glycosylase exhibits negligible affinity for nucleobases that it removes from DNA.
    Nucleic acids research, 2015, Oct-30, Volume: 43, Issue:19

    Topics: Base Pair Mismatch; Catalytic Domain; Crystallography, X-Ray; DNA; Humans; Models, Molecular; Nuclear Magnetic Resonance, Biomolecular; Pentoxyl; Protein Binding; Thymine; Thymine DNA Glycosylase; Uracil

2015
Molecular basis for the substrate specificity and catalytic mechanism of thymine-7-hydroxylase in fungi.
    Nucleic acids research, 2015, Nov-16, Volume: 43, Issue:20

    Topics: Biocatalysis; Catalytic Domain; Fungal Proteins; Ketoglutaric Acids; Mixed Function Oxygenases; Mutagenesis; Neurospora crassa; Pentoxyl; Protein Binding; Substrate Specificity; Thymine; Uracil

2015
Hydroxymethyluracil modifications enhance the flexibility and hydrophilicity of double-stranded DNA.
    Nucleic acids research, 2016, Mar-18, Volume: 44, Issue:5

    Topics: DNA; DNA-Binding Proteins; Epigenesis, Genetic; Hydrophobic and Hydrophilic Interactions; Molecular Dynamics Simulation; Nanopores; Nucleic Acid Denaturation; Oxidation-Reduction; Pentoxyl; Protein Binding; Surface Properties; Thymine

2016
Base J glucosyltransferase does not regulate the sequence specificity of J synthesis in trypanosomatid telomeric DNA.
    Molecular and biochemical parasitology, 2015, Volume: 204, Issue:2

    Topics: DNA, Protozoan; Glucosyltransferases; Kinetics; Leishmania; Pentoxyl; Protozoan Proteins; Telomere; Thymine

2015
Vitamin C enhances substantially formation of 5-hydroxymethyluracil in cellular DNA.
    Free radical biology & medicine, 2016, Volume: 101

    Topics: 5-Methylcytosine; Ascorbic Acid; Cytosine; DNA; DNA Methylation; HCT116 Cells; Humans; Mixed Function Oxygenases; Oxidation-Reduction; Pentoxyl; Proto-Oncogene Proteins; Spectrometry, Mass, Electrospray Ionization; Thymine

2016
Analysis of 5-Hydroxymethyluracil Levels Using Flow Cytometry.
    Methods in molecular biology (Clifton, N.J.), 2021, Volume: 2198

    Topics: 5-Methylcytosine; Chromatography, Liquid; Cytosine; DNA; DNA Methylation; Epigenesis, Genetic; Flow Cytometry; Humans; Oxidation-Reduction; Pentoxyl; Single-Cell Analysis; Tandem Mass Spectrometry; Thymine

2021