sulfites has been researched along with cytosine in 245 studies
| Timeframe | Studies, this research(%) | All Research% |
|---|---|---|
| pre-1990 | 39 (15.92) | 18.7374 |
| 1990's | 34 (13.88) | 18.2507 |
| 2000's | 60 (24.49) | 29.6817 |
| 2010's | 80 (32.65) | 24.3611 |
| 2020's | 32 (13.06) | 2.80 |
| Authors | Studies |
|---|---|
| Hayatsu, H | 2 |
| Budowsky, EI; Monastyrskaya, GS; Sverdlov, ED; Tarabakina, NS | 1 |
| Bryksina, LE; Monastyrskaya, GS; Podgorodnichenko, VK; Poverenny, AM; Sverdlov, ED | 1 |
| Kisselev, LL; Mazo, AM; Schienker, VS | 1 |
| Hayakawa, H; Kumura, K; Sekiguchi, M | 1 |
| Harada, F; Hayatsu, H; Negishi, K; Nishimura, S | 2 |
| Bhanot, OS; Chambers, RW | 1 |
| Aoyagi, S; Bhanot, OS; Chambers, RW | 1 |
| Hayatsu, H; Shiragami, M | 1 |
| Chekanovskaya, LA; Nikolaeva, IA; Sklyadneva, VB; Tikchonenko, TI | 1 |
| Chkanovskaia, LA; Nikolaeva, IA; Skliadneva, VB; Tikhonenko, TN | 1 |
| Taguchi, H; Wang, SY | 1 |
| Gazit, A; Shapiro, R | 1 |
| Bessho, T; Hayatsu, H; Negishi, K; Nitta, N | 1 |
| Collis, CM; Frommer, M; Grigg, GW; McDonald, LE; Millar, DS; Molloy, PL; Paul, CL; Watt, F | 1 |
| Carcagne, J; Carosella, ED; Ha, KT; Latour, M | 1 |
| Viscidi, RP | 1 |
| Connelly, CJ; Viscidi, RP; Yolken, RH | 1 |
| Sagher, D; Strauss, B | 1 |
| Carew, JA; Feldberg, RS | 1 |
| Budowsky, EI; Guskova, LI; Levitan, TL; Monastyrskaya, GS; Sheichenko, VI; Verdlov, ED | 1 |
| Lilius, EM; Raunio, R | 1 |
| Aoyagi, S; Bhanot, OS; Chambers, RW; Furukawa, Y; Zawadzka, H | 1 |
| Braverman, B; Louis, JB; Servis, RE; Shapiro, R | 1 |
| DiFate, V; Shapiro, R; Welcher, M | 1 |
| Hawryluk, I; Mukai, F; Shapiro, R | 1 |
| Drahovsky, D; Morris, NR | 1 |
| Hayatsu, H; Kazushige, K; Wataya, Y | 1 |
| Hayatsu, H; Miura, A | 1 |
| Cohen, BI; Servis, RE; Shapiro, R | 1 |
| Hayatsu, H; Iida, S; Kai, K; Wataya, Y | 1 |
| Shapiro, R; Weisgras, JM | 1 |
| Gunnison, AF | 1 |
| Shapiro, R | 1 |
| Deutsch, WA; Green, DA | 1 |
| Biagini, R; Cammarano, P; De Rosa, M; Gambacorta, A; Londei, P | 1 |
| Beresten, SF; Kisselev, LL; Mashkova, TD; Mazo, AM; Scheinker, VS | 1 |
| Avdonina, TA; Beresten, SF; Bogdanova, SL; Kisselev, LL; Mashkova, TD; Mazo, AM; Scheinker, VS | 1 |
| Bhanot, OS; Sabban, EL | 1 |
| Duncan, BK; Weiss, B | 1 |
| Hayatsu, H; Negishi, K; Tomita, K; Yamagata, Y; Yamashita, Y; Yui, S | 1 |
| Kozak, M | 1 |
| Clark, SJ; Frommer, M; Harrison, J | 1 |
| Jost, JP; Raizis, AM; Schmitt, F | 1 |
| Clark, SJ; Frommer, M; Harrison, J; Paul, CL | 1 |
| Clark, S; Grigg, G | 1 |
| Bird, AP; Charlton, J; Feil, R; Reik, W; Walter, J | 1 |
| Chen, H; Shaw, BR | 2 |
| Prydz, H; Reeben, M | 1 |
| Imai, Y; Kurokawa, Y; Maeda, T; Sasaki, Y | 1 |
| Heinlein, M; Kunze, R; Wang, L | 1 |
| Georgiev, O; Matsuo, K; Rother, KI; Schaffner, W; Silke, J | 1 |
| Clark, SJ; Paul, CL | 1 |
| Grigg, GW | 1 |
| DePamphilis, ML; Rein, T; Zorbas, H | 1 |
| Kato, M | 1 |
| Olek, A; Oswald, J; Walter, J | 1 |
| Buiting, K; Dittrich, B; Doerfler, W; Horsthemke, B; Schmitz, B; Zeschnigk, M | 1 |
| Magill, C; Magill, JM; Newton, RJ; Zhou, Y | 1 |
| Bartolomei, MS; Duran, KL; Tremblay, KD | 1 |
| Brown, WT; Kajimura, TM; Laird, CD; Stöger, R | 1 |
| Clark, SJ; Melki, JR; Millar, DS; Paul, CL; Stirzaker, C; Warnecke, PM | 1 |
| Clark, SJ; Frommer, M; Mann, JR; Warnecke, PM | 1 |
| Davey, MW; Grigg, GW; Paulin, R; Piper, AA | 1 |
| Clark, SJ; Harrison, J; Stirzaker, C | 1 |
| Carbonaro, DA; Kohn, DB; Robbins, PB; Wang, L | 1 |
| Burri, N; Chaubert, P | 1 |
| Arnaud, P; Deragon, JM; Goubely, C; Heslop-Harrison, JS; Tatout, C | 1 |
| Radlińska, M; Skowronek, K | 1 |
| Klimasauskas, S; Vilkaitis, G | 1 |
| Jost, JP; Oakeley, EJ; Schmitt, F | 1 |
| Hoffman, AR; Hu, JF; Li, T; Nguyen, BT; Nguyen, D; Vu, TH; Yao, XM | 1 |
| Nagane, Y; Tohgi, H; Utsugisawa, K | 1 |
| Lagunavicius, A; Lubys, A; Sapranauskas, R; Sasnauskas, G; Siksnys, V; Vilkaitis, G | 1 |
| Grimes, SR; Singal, R | 1 |
| Jackson, M; Lough, J; Morris, R; Moyer, R | 1 |
| Clark, SJ; Grunau, C; Rosenthal, A | 1 |
| Carfagna, M; De Felice, B; Pontecorvo, G | 1 |
| Gartler, SM; Gimelli, G; Hansen, RS; Hassan, KM; Norwood, T | 1 |
| Fujita, M; Hosokawa, M; Imai, K; Itoh, F; Kikuchi, T; Suzuki, H; Toyota, M; Yamamoto, H | 1 |
| Holt, BJ; Holt, PG; Watt, PM; White, GP | 1 |
| Clark, SJ; Warnecke, PM | 1 |
| Clark, SJ; Grunau, C; Melki, JR; Song, J; Stirzaker, C; Warnecke, PM | 1 |
| Grønbaek, K; Guldberg, P; Worm, J | 1 |
| Esteller, M; Fraga, MF | 1 |
| Baumer, A; Hornby, DP; Matin, MM | 1 |
| Avila, A; Balog, RP; de Souza, YE; DeMasellis, GM; Gaban, DJ; Gao, B; Garner, HR; Luebke, KJ; Minna, JD; Mittelman, D; Tang, HM | 1 |
| Bartee, L; Bender, J; Malagnac, F | 1 |
| Ohashi, H | 1 |
| Pakneshan, P; Rabbani, SA; Xing, RH | 1 |
| Carvin, CD; Dhasarathy, A; Friesenhahn, LB; Jessen, WJ; Kladde, MP | 1 |
| Clark, AD; Hansen, RS; Hassan, KM; Laird, CD; Manley, NC; Morgan, T; Pleasant, ND; Sneeden, JL; Stöger, R; Vary, JC | 1 |
| Eshilev, E; Ivanova, T; Kisseljov, F; Kisseljova, N; Petrenko, A; Solovyova, N; Vinokurova, S | 1 |
| El-Maarri, O | 1 |
| Aoyama, T; Ishibe, T; Nagayama, S; Nakamura, T; Nakayama, T; Nishijo, K; Okamoto, T; Toguchida, J; Yasura, K | 1 |
| Futscher, BW; Holtan, N; Isett, RB; List, AF; Merchant, NC; Miller, SJ; Munoz-Rodriguez, JL; Narro, ML; Nouzova, M; Oshiro, MM | 1 |
| Kone, BC; Yu, Z | 1 |
| Cherry, JM; Farrar, WL; Hodge, DR; Munroe, DJ; Peng, B; Pompeia, C; Thomas, SB; Xiao, W | 1 |
| Andrews, TD; Beck, S; Berlin, K; Cox, AV; Fischer, J; Gut, IG; Hildmann, T; Howe, KL; Lewin, J; Novik, KL; Olek, A; Otto, T; Rakyan, VK; Tost, J | 1 |
| Ankri, S; Banerjee, S; Fisher, O; Lohia, A | 1 |
| de Bruïne, AP; Derks, S; Hellebrekers, DM; Herman, JG; Lentjes, MH; van Engeland, M | 1 |
| Burden, AF; Clark, AD; Gartler, SM; Hansen, RS; Laird, CD; Manley, NC | 1 |
| de Maat, MF; Hoon, DS; Mori, T; Takeuchi, H; Umetani, N | 1 |
| Inoue, S; Oishi, M | 1 |
| Hayatsu, H; Shiraishi, M | 1 |
| Assadzadeh, A; Flanagan, J; Kaminsky, ZA; Petronis, A | 1 |
| Chen, Y; Costa, E; Grayson, DR; Guidotti, A; Jia, X; Mitchell, CP; Sharma, RP | 1 |
| Fukushima, M; Hasegawa, T; Kim, HS; Wataya, Y | 1 |
| Bedell, JA; Citek, RW; Jeddeloh, JA; Nunberg, AN; Ordway, JM | 1 |
| Ratnam, S; Shen, HM; Storb, U | 1 |
| Asada, K; Asada, R; Floyd, RA; Fukui, H; Kotake, Y; Yoshiji, H | 1 |
| Jang, SM; Ku, HK; Park, IY; Park, SR; Shi, LH; Yang, I | 1 |
| Cauchi, S; Han, W; Herman, JG; Spivack, SD | 1 |
| Hayatsu, H; Negishi, K; Shiraishi, M | 1 |
| Hayatsu, H; Negishi, K; Tsuji, K | 1 |
| Okamoto, A; Tanaka, K | 1 |
| Hayatsu, H; Moriyama, K; Negishi, K; Shiraishi, M; Tsuji, K | 1 |
| Bacher, B; Budiman, A; Citek, RW; Jeddeloh, JA; Korshunova, Y; Lakey, N; Leon, J; Maloney, RK; McCombie, WR; McPherson, JD; Ordway, JM | 1 |
| Chollet, D; Delucinge Vivier, C; Descombes, P; Paszkowski, J; Reinders, J; Theiler, G | 1 |
| Chen, Z; Cokus, SJ; Feng, S; Haudenschild, CD; Jacobsen, SE; Merriman, B; Nelson, SF; Pellegrini, M; Pradhan, S; Zhang, X | 1 |
| Ishii, N; Kikuchi, M; Morinaga, H; Nakamura, N; Yamamoto, K; Yonei, S; Yonekura, S; Zhang, QM | 1 |
| Nakatani, K; Oka, Y; Peng, T; Takei, F | 1 |
| Burden, AF; Genereux, DP; Johnson, WC; Laird, CD; Stöger, R | 1 |
| Dobrovic, A; Wojdacz, TK | 1 |
| Dugast-Darzacq, C; Grange, T | 1 |
| Hanna, K; Lyko, F; Pollex, T; Schaefer, M | 1 |
| Murphy, BC; O'Reilly, RL; Singh, SM | 1 |
| Engelhart, AE; Hatmal, MM; Haworth, IS; Houston, SI; Hud, NV; Lieber, MR; Tsai, AG | 1 |
| Nakatani, K; Oka, Y; Takei, F | 1 |
| Hayatsu, H; Negishi, K; Wataya, Y | 1 |
| Bailey, VJ; Baylin, SB; Brock, MV; Carraway, HE; Easwaran, H; Herman, JG; Ho, YP; Keeley, BP; Pelosky, KL; Wang, TH; Zhang, Y | 1 |
| Cao, X; Chan, SR; Henderson, IR; Jacobsen, SE; Johnson, L | 1 |
| Huang, Y; Liu, DR; Pastor, WA; Rao, A; Shen, Y; Tahiliani, M | 1 |
| Foerster, AM; Mittelsten Scheid, O | 1 |
| Foerster, AM; Hetzl, J; Mittelsten Scheid, O; Müllner, C | 1 |
| Boyko, A; Kovalchuk, I | 1 |
| Jin, SG; Kadam, S; Pfeifer, GP | 1 |
| Blazkova, J; Burny, A; Calomme, C; Cardona, C; Colin, L; Dekoninck, A; Guiguen, A; Hirsch, I; Kettmann, R; Merimi, M; Nguyên, TL; Nuttinck, M; Pierard, V; Portetelle, D; Rohr, O; Twizere, JC; Van Driessche, B; Van Lint, C; Vanhulle, C; Vierendeel, V; Wijmeersch, G | 1 |
| Dunican, D; Meehan, R; Nestor, C; Ruzov, A | 1 |
| Aichinger, E; Köhler, C | 1 |
| Ballinger, T; Bernstein, BE; Bock, C; Chung, WY; Coarfa, C; Costello, JF; Delaney, A; Downey, SL; Echipare, L; Ecker, JR; Epstein, CB; Farnham, PJ; Forsberg, KJ; Fouse, SD; Gnirke, A; Gu, H; Gu, J; Harris, RA; Haussler, D; Hawkins, RD; Hirst, M; Hong, C; Johnson, BE; Li, W; Lister, R; Marra, MA; Meissner, A; Milosavljevic, A; Nagarajan, RP; O'Geen, H; Olshen, A; Pelizzola, M; Ren, B; Wang, T; Waterland, RA; Xi, Y; Zhang, MQ; Zhao, Y; Zhou, X | 1 |
| Hanna, K; Pollex, T; Schaefer, M | 1 |
| Bonthron, DT; Carr, IM; Darst, RP; Hoffman, CJ; Kladde, MP; Markham, AF; Pardo, CE | 1 |
| Han, L; Su, Z; Zhao, Z | 1 |
| Iqbal, K; Jin, SG; Pfeifer, GP; Szabó, PE | 1 |
| Andrews, SR; Krueger, F | 1 |
| Haque, N; Nishiguchi, M | 1 |
| Cowley, MJ; Cropley, JE; Li, CC; Martin, DI; Preiss, T; Suter, CM | 1 |
| Fischer, RL; Hsieh, TF; Ibarra, C; Pedersen, B | 1 |
| Barrès, R; Yan, J; Zierath, JR | 1 |
| Paszkowski, J; Reinders, J | 1 |
| Acevedo, LG; Jelinek, MA; Sanz, A | 1 |
| Dubuc, AM; Taylor, MD; Unterberger, A | 1 |
| Adey, A; Shendure, J | 1 |
| Balasubramanian, S; Booth, MJ; Branco, MR; Ficz, G; Krueger, F; Oxley, D; Reik, W | 1 |
| Harris, EY; Le Roch, KG; Lonardi, S; Ponts, N | 1 |
| Hoffmann, S; Otto, C; Stadler, PF | 1 |
| Aitman, TJ; Game, L; Johnson, MD; Mueller, M | 1 |
| Dinh, HQ; Dubin, M; Lettner, N; Mittelsten Scheid, O; Sedlazeck, FJ; von Haeseler, A | 1 |
| Miller, AK; Schüler, P | 1 |
| Huang, Y; Pastor, WA; Rao, A; Zepeda-Martínez, JA | 1 |
| Ecker, JR; Schmitz, RJ; Schultz, MD | 1 |
| He, C; Hon, GC; Jin, P; Ren, B; Song, CX; Szulwach, KE; Yu, M | 1 |
| Bhagwat, AS; Chan, K; Gordenin, DA; Resnick, MA; Roberts, SA; Sterling, JF | 1 |
| Hu, D; Jin, L; Lü, J; Wang, W | 2 |
| He, C; Jin, P; Lu, X; Song, CX; Szulwach, K; Wang, Z; Weidenbacher, P | 1 |
| Bassil, CF; Huang, Z; Murphy, SK | 1 |
| Alili, D; Gasparutto, D; Ishchenko, AA; Prorok, P; Saint-Pierre, C; Saparbaev, MK; Tudek, B; Zharkov, DO | 1 |
| Bollig-Fischer, A; Cao, X; Chen, CC; Cingolani, P; Coon, M; Garfinkel, MD; Huang, Y; Hudson, ME; Khetani, RS; Land, S; Robinson, GE; Ruden, DM; Sammak, A; Zhong, S | 1 |
| Fu, B; Guo, G; Huang, R; Mao, W; Wang, J; Xing, X; Zhou, X | 1 |
| Mituyama, T; Saito, Y; Tsuji, J | 1 |
| Bachman, M; Balasubramanian, S; Beraldi, D; Booth, MJ; Marsico, G | 1 |
| Armano, G; Manca, E; Manconi, A; Milanesi, L; Orro, A | 1 |
| Holbrook, JD; Lin, X; Ong, ML | 1 |
| Beygo, J; Borgmann, J; Buiting, K; Gromoll, J; Horsthemke, B; Kliesch, S; Laurentino, S; Nordhoff, V; Wistuba, J | 1 |
| Hahn, MA; Li, AX; Pfeifer, GP; Wu, X | 1 |
| Ecker, JR; Lister, R; Nery, JR; Schmitz, RJ; Urich, MA | 1 |
| Bachman, M; Balasubramanian, S; Beck, S; Beraldi, D; Field, SF; Stewart, SK | 1 |
| Yuan, BF | 1 |
| Alonso, A; Betel, D; Figueroa, ME; Garrett-Bakelman, FE; Ishii, J; Kacmarczyk, TJ; Mason, CE; Melnick, AM; Sheridan, CK | 1 |
| Burgess, D; Eichten, SR; Greally, JM; Green, D; Hermanson, PJ; Jeddeloh, J; Li, Q; Patterson, N; Richmond, T; Rosenbaum, H; Springer, NM; Suzuki, M; Wendt, J | 1 |
| Chin, C; Deciu, C; Ehrich, M; Gebhard, C; Jensen, TJ; Kim, SK; Lu, T; van den Boom, D; Zhu, Z | 1 |
| Burden, CJ; Forêt, S; Lin, P; Wilson, SR | 1 |
| Bolnick, DA; Monroe, C; Smith, RW | 1 |
| Busato, F; Daunay, A; Daviaud, C; Deleuze, JF; Gallusci, P; How-Kit, A; Mazaleyrat, N; Teyssier, E; Tost, J | 1 |
| Chung, DH; Groom, J; He, C; Ji, L; Neumann, DA; Schmitz, RJ; Westpheling, J; Yu, M | 1 |
| Han, D; He, C; Jiang, X; Liu, M; Lu, X; Sun, Z; Xia, B; Xie, W; Yi, C; Yin, Q; Zeng, H; Zhou, A | 1 |
| Fukuzawa, S; Suetake, I; Tachibana, K; Tajima, S | 1 |
| Kenta, N; Lee, JH; Park, SJ | 1 |
| Mituyama, T; Saito, Y | 1 |
| Al-Sarraj, S; Burrage, J; Dempster, E; Hannon, E; Kepa, A; Lunnon, K; Mill, J; Schalkwyk, L; Smith, RG; Troakes, C; Wong, C | 1 |
| Bianchessi, V; Capogrossi, MC; Farina, F; Gualdi, V; Lauri, A; Nigro, P; Pompilio, G; Rizzi, V; Vinci, MC | 1 |
| Hou, JR; Liu, XJ; Mao, BY; Qiu, G; Ye, SS | 1 |
| Wu, H; Wu, X; Zhang, Y | 1 |
| Incarnato, D; Krepelova, A; Neri, F; Oliviero, S; Parlato, C | 1 |
| Fukuzawa, S; Suetake, I; Tachibana, K; Tajima, S; Takahashi, S | 1 |
| Alici, G; Hossain, MSA; Hossain, T; Islam, MN; Konstantinov, K; Mahmudunnabi, G; Martinac, B; Masud, MK; Nguyen, NT; Ooi, L; Shiddiky, MJA | 1 |
| Moran, S | 1 |
| Coppens, F; De Block, M; Martens, C; Schmidt, M; Slabbinck, B; Van Bel, M; Van Lijsebettens, M; Woloszynska, M | 1 |
| Asahara, H; Miyata, K; Miyata, T; Mokuda, S; Naito, M | 1 |
| Chen, YR; Yu, S; Zhong, S | 1 |
| Lee, HJ; Smallwood, SA | 1 |
| Daviaud, C; Deleuze, JF; Mauger, F; Renault, V; Tost, J | 1 |
| Cheng, J; Huang, D; Long, F; Yi, S | 1 |
| Owa, C; Poulin, M; Shioda, T; Yan, L | 1 |
| Giehr, P; Kyriakopoulos, C; Lepikhov, K; Wallner, S; Walter, J; Wolf, V | 1 |
| Fujita, K; Hashimoto, M | 1 |
| Corces, VG; Xu, C | 1 |
| Kriegel, AJ; Liang, M; Liu, Y | 1 |
| Garg, R; Gupta, K | 1 |
| He, Q; He, Z; Liu, X; Liu, Y; Sun, Z; Wu, F; Zhao, M; Zhou, J | 1 |
| Coppens, F; Schmidt, M; Van Bel, M; Van Lijsebettens, M; Woloszynska, M | 1 |
| Boquete, MT; Mounger, J; Richards, CL; Vergeer, P; Wagemaker, NCAM | 1 |
| Andersen, CL; Bramsen, JB; Jensen, SØ; Nielsen, HJ; Øgaard, N | 1 |
| de Lourdes Muñoz, M; García-Hernández, N; Pérez-Muñoz, AA; Santander-Lucio, H | 1 |
| Halla-Aho, V; Lähdesmäki, H | 1 |
| Auch, B; Chen, J; Chen, Y; Colwell, M; De Flora, S; Faulk, C; Han, Q; Kassie, F; Kono, TJY; Kotandeniya, D; La Maestra, S; Ren, Y; Sarver, AL; Seiler, CL; Song, JUM; Tretyakova, NY; Upadhyaya, P | 1 |
| Stöger, R | 1 |
| Huang, Z; Kohli, RM; Meng, Y; Pfeifer, GP; Szabó, PE | 1 |
| Branco, MR; De Borre, M | 1 |
| Berrios, KN; Kohli, RM; Luo, M; Schutsky, EK; Wang, T; Wu, H | 1 |
| Sang, F | 1 |
| Gibas, P; Kriukienė, E; Ličytė, J; Rukšėnaitė, A; Skardžiūtė, K; Stankevičius, V | 1 |
| Chédin, F; Hartono, SR; Heyer, WD; Shah, SS | 1 |
| Asp, T; Eriksen, B; Eriksen, LB; Jahoor, A; Jensen, CS; Jensen, J; Krusell, L; Malinowska, M; Nagy, I; Ruud, AK; Svane, SF; Thorup-Kristensen, K; Wagemaker, CAM | 1 |
| Minczuk, M; Van Haute, L | 1 |
| Baubec, T; Butz, S; Caflisch, A; Ilie, IM; Karemaker, ID; Mallona, I; Manzo, M | 1 |
| Catoni, M; Zabet, NR | 1 |
| Balasubramanian, S; Booth, MJ | 1 |
| Eden, HE; Huang, Z; Robertson, KD; Rothbart, SB; Tiedemann, RL | 1 |
| Bai, L; Huang, N; Liu, W; Luo, F; Ni, P; Nie, F; Wang, J; Wu, B; Xiao, CL; Zhang, J; Zhang, Z | 1 |
| Lee, H | 1 |
| Arbib, N; Avraham, S; Coruh, C; Ebenstein, Y; Gabrieli, T; Juhasz, M; Law, JA; Margalit, S; Michaeli, Y; Schütz, L; Torchinsky, D; Weinhold, E; Zhou, ZS | 1 |
| Feng, H; Lou, Z; Qian, Y; Teng, J; Xue, L; Zhang, Y; Zheng, B; Zhu, F | 1 |
| Edsinger, E; Macchi, F; Sadler, KC | 1 |
| Kim, H; Kim, J; Kwon, K; Park, N; Sim, M | 1 |
| Hara, S; Higashimoto, K; Soejima, H | 1 |
| Chen, KK; Feng, YQ; Ji, TT; Tang, F; Xie, C; Xie, NB; Xiong, J; Yu, SY; Yuan, BF | 1 |
| Chen, KK; Feng, YQ; Guo, X; Ji, TT; Tang, F; Wang, M; Xie, C; Xie, NB; Xiong, J; Yu, SY; Yuan, BF | 1 |
| Chang, YS; Chen, PY; Yen, MR | 1 |
| An, R; Bai, Y; Cao, Y; Fan, Y; Gu, Q; Peng, J; Ren, L; Song, L; Song, W; Xie, XS; Yuan, T; Zheng, Y | 1 |
15 review(s) available for sulfites and cytosine
| Article | Year |
|---|---|
Bisulfite modification of nucleic acids and their constituents.
Topics: Binding Sites; Chemical Phenomena; Chemistry; Cysteine; Cytosine; DNA; Hydrogen-Ion Concentration; Nucleic Acid Conformation; Poly C; Poly U; Polynucleotides; Pseudouridine; Pyrimidines; Sulfites; Sulfonic Acids; Thymine; Uracil | 1976 |
Sulphite toxicity: a critical review of in vitro and in vivo data.
Topics: Aldehydes; Animals; Cells, Cultured; Chemical Phenomena; Chemistry; Chromosomes; Cytosine; Deamination; DNA; Free Radicals; Humans; Ketones; Proteins; RNA; Sulfites | 1981 |
Genetic effects of bisulfite: implications for environmental protection.
Topics: Air Pollutants; Animals; Carcinogens; Cytosine; Environmental Exposure; Humans; Mutagens; Oxidoreductases Acting on Sulfur Group Donors; Sulfites; Sulfur Dioxide | 1983 |
Sequencing 5-methylcytosine residues in genomic DNA.
Topics: 5-Methylcytosine; Base Sequence; Blotting, Southern; Cytosine; DNA; DNA Restriction Enzymes; Electrophoresis, Polyacrylamide Gel; Genome; Hydrazines; Methylation; Molecular Sequence Data; Polymerase Chain Reaction; Sequence Analysis, DNA; Sulfites | 1994 |
Sequencing 5-methylcytosine residues by the bisulphite method.
Topics: 5-Methylcytosine; Animals; Automation; Base Sequence; Cytosine; DNA; Indicators and Reagents; Nucleic Acid Denaturation; Polymerase Chain Reaction; Reproducibility of Results; Sensitivity and Specificity; Sulfites | 1996 |
DNA methylation: a profile of methods and applications.
Topics: 5-Methylcytosine; Chromatography, High Pressure Liquid; Cytosine; DNA; DNA Methylation; Electrophoresis, Capillary; Genome; Microchemistry; Polymerase Chain Reaction; Restriction Mapping; Sequence Analysis, DNA; Sulfites | 2002 |
Methods: DNA methylation.
Topics: Base Sequence; CpG Islands; Cytosine; DNA; DNA Methylation; Methods; Polymerase Chain Reaction; Sulfites | 2003 |
Methylation-specific PCR unraveled.
Topics: Biomarkers, Tumor; Chromatography, High Pressure Liquid; CpG Islands; Cytosine; DNA Methylation; DNA Primers; Gene Silencing; Humans; Polymerase Chain Reaction; Software; Sulfites; Uracil | 2004 |
Discovery of bisulfite-mediated cytosine conversion to uracil, the key reaction for DNA methylation analysis--a personal account.
Topics: Cytosine; DNA Methylation; Sulfites; Uracil | 2008 |
Bisulfite methylation profiling of large genomes.
Topics: 5-Methylcytosine; Animals; Arabidopsis; Cytosine; DNA Methylation; Epigenesis, Genetic; Genome; High-Throughput Nucleotide Sequencing; Humans; Mice; Nanopores; Sulfites | 2010 |
Novel DNA binding domain-based assays for detection of methylated and nonmethylated DNA.
Topics: 5-Methylcytosine; Biomarkers; CpG Islands; Cytosine; DNA (Cytosine-5-)-Methyltransferases; DNA Methylation; DNA Primers; Humans; Immunoprecipitation; Polymerase Chain Reaction; Protein Interaction Domains and Motifs; Sensitivity and Specificity; Sulfites | 2011 |
Measuring epigenetics as the mediator of gene/environment interactions in DOHaD.
Topics: Cytosine; Cytosine Nucleotides; Data Interpretation, Statistical; DNA Methylation; Epigenesis, Genetic; Gene-Environment Interaction; Genome-Wide Association Study; Humans; Phenotype; Polymorphism, Single Nucleotide; Sulfites | 2015 |
5-methylcytosine and its derivatives.
Topics: 5-Methylcytosine; Chromatography, Thin Layer; Cytosine; DNA Methylation; Electrophoresis, Capillary; Endonucleases; Epigenesis, Genetic; Gas Chromatography-Mass Spectrometry; Humans; Microarray Analysis; Oxidation-Reduction; Polymerase Chain Reaction; Sulfites | 2014 |
Electrochemical biosensing strategies for DNA methylation analysis.
Topics: Biosensing Techniques; CpG Islands; Cytosine; DNA; DNA Methylation; Electrochemical Techniques; Humans; Sequence Analysis, DNA; Sulfites | 2017 |
Technologies for Deciphering Epigenomic DNA Patterns.
Topics: 5-Methylcytosine; CpG Islands; Cytosine; DNA Methylation; Epigenomics; Formaldehyde; Humans; Microarray Analysis; Paraffin Embedding; Sulfites; Tissue Fixation; Uracil | 2017 |
230 other study(ies) available for sulfites and cytosine
| Article | Year |
|---|---|
Reaction of the cytosine nucleus with hydrazine in the presence of bisulphite.
Topics: Chemical Phenomena; Chemistry; Cytosine; Hydrazines; Hydrogen-Ion Concentration; Kinetics; Sulfites; Temperature | 1976 |
Immunochemical approaches to DNA structure investigation--I. Immunochemical identification of the product of cytosine modification with bisulphite and O-methylhydroxylamine mixture.
Topics: Antibodies, Antinuclear; Antibody Formation; Antibody Specificity; Cytosine; DNA; Epitopes; Hydroxylamines; Sulfites | 1979 |
A directed alteration of ribonuclease specificity. Hydrolysis of polyribonucleotides containing modified cytosine bases.
Topics: Cytosine; Escherichia coli; Oligonucleotides; Phosphoric Monoester Hydrolases; Polynucleotides; Ribonucleases; Structure-Activity Relationship; Sulfites | 1975 |
Role of uracil-DNA glycosylase in the repair of deaminated cytosine residues of DNA in Escherichia coli.
Topics: Binding Sites; Coliphages; Cytosine; Deoxyuracil Nucleotides; DNA Repair; DNA, Viral; Escherichia coli; Mutation; N-Glycosyl Hydrolases; Nucleic Acid Denaturation; Sulfites | 1978 |
Chemical modification study of aminoacyl-tRNA conformation.
Topics: Anticodon; Base Sequence; Cytosine; Escherichia coli; Leucine; Nucleic Acid Conformation; Oligoribonucleotides; Phenylalanine; RNA, Transfer, Amino Acyl; Saccharomyces cerevisiae; Semicarbazides; Sulfites | 1979 |
Bisulfite-induced C changed to U transitions in yeast alanine tRNA.
Topics: Alanine; Anticodon; Base Sequence; Cytosine; Kinetics; Oligoribonucleotides; Ribonuclease T1; Ribonucleosides; RNA, Transfer; Saccharomyces cerevisiae; Sulfites; Uracil | 1977 |
Bisulfite-induced C changed to U transitions in yeast valine tRNA.
Topics: Base Sequence; Binding Sites; Cytosine; Kinetics; Nucleic Acid Conformation; Oligoribonucleotides; Ribonuclease T1; RNA, Transfer; Saccharomyces cerevisiae; Sulfites; Uracil; Valine | 1977 |
A rapid cytosine-specific modification of E. coli tRNA Leu 1 by semicarbazide-bisulfite, a probe for polynucleotide conformations.
Topics: Base Sequence; Cytosine; Escherichia coli; Leucine; Nucleic Acid Conformation; Oligoribonucleotides; Ribonuclease T1; Ribonucleotides; RNA, Transfer; Semicarbazides; Sulfites | 1977 |
Reaction of bisulfite with the 5-hydroxymethyl group in pyrimidines and in phage DNAs.
Topics: 5-Methylcytosine; Chemical Phenomena; Chemistry; Coliphages; Cytosine; DNA, Viral; Pentoxyl; Pyrimidines; Spectrophotometry, Ultraviolet; Sulfites; Uracil | 1979 |
The secondary structure of bacteriophage DNA in situ. VIII. The reaction of sodium bisulphite with intraphage cytosine as a probe for studying the DNA-protein interaction.
Topics: Bacteriophages; Base Composition; Chemical Phenomena; Chemistry; Cytosine; DNA, Viral; Sulfites; Viral Proteins | 1979 |
[Interaction between sodium bisulfite and bacteriophage SD DNA].
Topics: Bacteriophages; Cytosine; DNA, Viral; Hydrolysis; Nucleoproteins; Sulfites | 1978 |
Addition of bisulfite to cytosine derivatives.
Topics: Chemical Phenomena; Chemistry; Cytosine; Spectrophotometry, Ultraviolet; Sulfites | 1977 |
Crosslinking of nucleic acids and proteins by bisulfite.
Topics: Chemical Phenomena; Chemistry; Cytosine; DNA; Indicators and Reagents; Lysine; Macromolecular Substances; Methods; Polylysine; Proteins; RNA, Viral; Sulfites | 1977 |
Blockage of polymerase-catalyzed DNA chain elongation by chemically modified cytosine residues in templates and the release of blockage for readthrough.
Topics: Bacteriophages; Base Sequence; Cytosine; DNA Replication; DNA-Binding Proteins; DNA-Directed DNA Polymerase; DNA, Viral; Escherichia coli; Molecular Sequence Data; Mutagenesis; Nucleic Acid Conformation; Nucleic Acid Synthesis Inhibitors; Oligodeoxyribonucleotides; Rec A Recombinases; Sulfites; Templates, Genetic | 1992 |
A genomic sequencing protocol that yields a positive display of 5-methylcytosine residues in individual DNA strands.
Topics: 5-Methylcytosine; Base Sequence; Cytosine; DNA; Humans; Kininogens; Methylation; Molecular Sequence Data; Oligodeoxyribonucleotides; Polymerase Chain Reaction; Promoter Regions, Genetic; Sulfites | 1992 |
Use of sulfonation method to determine DNA contamination of cell cultured monoclonal antibodies produced for human therapeutics.
Topics: Antibodies, Monoclonal; Cells, Cultured; Cytosine; DNA; Drug Contamination; Humans; Quality Control; Sulfites; Sulfonic Acids | 1991 |
Modification of cytosine residues on DNA.
Topics: Aminocaproates; Bacterial Proteins; Bacteriophage lambda; Biotin; Blotting, Southern; Cytosine; DNA Probes; DNA, Viral; Ethylenediamines; Indicators and Reagents; Nucleic Acid Hybridization; Streptavidin; Succinimides; Sulfites | 1990 |
Novel chemical method for the preparation of nucleic acids for nonisotopic hybridization.
Topics: Adenoviruses, Human; Aminocaproates; Bacteriophage lambda; Biotin; Cytosine; DNA, Viral; Ethylenediamines; Indicators and Reagents; Nucleic Acid Hybridization; Polynucleotides; Succinimides; Sulfites | 1986 |
Abasic sites from cytosine as termination signals for DNA synthesis.
Topics: Base Sequence; Cytosine; DNA Glycosylases; DNA Replication; DNA-Directed DNA Polymerase; Escherichia coli; N-Glycosyl Hydrolases; Sulfites; Templates, Genetic; Uracil-DNA Glycosidase | 1985 |
Recognition of a cytosine base lesion by a human damage-specific DNA binding protein.
Topics: Cytosine; DNA Glycosylases; DNA Repair; DNA-Binding Proteins; Humans; Hydrogen-Ion Concentration; Mutation; N-Glycosyl Hydrolases; Sulfites; Temperature; Uracil; Uracil-DNA Glycosidase | 1985 |
Modification of cytidine residues with a bisulfite-O-methylhydroxylamine mixture.
Topics: Animals; Carbon Radioisotopes; Chickens; Chromatography, Ion Exchange; Chromatography, Paper; Chromatography, Thin Layer; Circular Dichroism; Cytidine; Cytosine; DNA; Drug Stability; Electrophoresis, Paper; Erythrocytes; Hydrogen-Ion Concentration; Hydroxylamines; Kinetics; Nucleic Acid Denaturation; Oligonucleotides; Phosphoric Diester Hydrolases; Ribonucleases; Snakes; Spectrophotometry, Ultraviolet; Stereoisomerism; Sulfites; Sulfonic Acids; Venoms | 1974 |
Effect of electron donors and acceptors on alcohol dehydrogenase activity during the growth of Escherichia coli.
Topics: Alcohol Oxidoreductases; Aniline Compounds; Ascorbic Acid; Catechols; Colorimetry; Culture Media; Cytosine; Escherichia coli; Glutathione; Histidine; Iodates; Iodine; Nitrates; Oxidation-Reduction; Phenylalanine; Potassium Permanganate; Sulfides; Sulfites; Thymine; Time Factors; Tryptophan | 1973 |
Inactivation of valine acceptor ativity by a C-U missense change in the anticodon of yeast valine transfer ribonucleic acid.
Topics: Base Sequence; Chromatography, DEAE-Cellulose; Cytosine; Genetic Code; Isoleucine; Nucleotides; Ribonucleotides; RNA, Transfer; Saccharomyces cerevisiae; Spectrophotometry, Ultraviolet; Sulfites; Uracil Nucleotides; Valine | 1973 |
Nucleic acid reactivity and conformation. II. Reaction of cytosine and uracil with sodium bisulfite.
Topics: Animals; Cattle; Chemical Phenomena; Chemistry; Circular Dichroism; Cytosine; Deamination; DNA; DNA, Single-Stranded; Kinetics; Mutagens; Nucleic Acid Conformation; Nucleic Acid Denaturation; Poly A-U; Poly I-C; Poly U; Polynucleotides; Sodium; Spectrophotometry, Ultraviolet; Structure-Activity Relationship; Sulfites; Temperature; Thymus Gland; Uracil | 1973 |
Deamination of cytosine derivatives by bisulfite. Mechanism of the reaction.
Topics: Chemical Phenomena; Chemistry; Cytidine; Cytosine; Deamination; Deoxycytidine; Evaluation Studies as Topic; Hydrogen-Ion Concentration; Hydrolysis; Kinetics; Mathematics; Methods; Models, Chemical; Sodium; Sulfites | 1974 |
The mutagenic specificity of sodium bisulfite.
Topics: Cytosine; Escherichia coli; Guanine; Hydrogen-Ion Concentration; Mutagens; Mutation; Sodium; Sulfites | 1970 |
The mechanism of action of rat liver DNA methylase. 3. Nucleotide requirements for binding and methylation.
Topics: Alkylation; Animals; Chromatography, Gas; Cytosine; Deamination; DNA, Bacterial; In Vitro Techniques; Kinetics; Liver; Methylation; Methyltransferases; Nucleotides; Polynucleotides; Protein Binding; Rats; Sulfates; Sulfites; Tritium | 1972 |
The addition of sodium bisulfite to uracil and to cytosine.
Topics: Chemical Phenomena; Chemistry; Cytosine; Magnetic Resonance Spectroscopy; Sulfites; Sulfonic Acids; Uracil | 1970 |
The mutagenic action of sodium bisulfite.
Topics: Coliphages; Cytosine; Genes; Hydroxylamines; Mutagens; Mutation; Sodium; Sulfites | 1970 |
Specific deamination of RNA by sodium bisulphite.
Topics: Amines; Chemical Phenomena; Chemistry; Chromatography, Thin Layer; Cytosine; RNA; Spectrophotometry; Sulfites; Yeasts | 1970 |
Reaction of sodium bisulfite with uracil, cytosine, and their derivatives.
Topics: Chemical Phenomena; Chemistry; Chromatography, Paper; Cytosine; Deuterium; Electrophoresis; Hydrogen-Ion Concentration; Infrared Rays; Magnetic Resonance Spectroscopy; Nucleosides; Pancreas; Ribonucleases; Spectrum Analysis; Sulfites; Sulfonic Acids; Sulfur Dioxide; Sulfur Isotopes; Ultraviolet Rays; Uracil | 1970 |
Bisulfite-catalyzed transamination of cytosine and cytidine.
Topics: Amines; Chemical Phenomena; Chemistry; Cytosine; Nucleosides; Sulfites | 1970 |
Direct determination of uracil in [32P,uracil-3H]poly(dA.dT) and bisulfite-treated phage PM2 DNA.
Topics: 5-Methylcytosine; Bacteriophages; Chromatography, Thin Layer; Cytosine; Deoxyuracil Nucleotides; DNA; DNA Glycosylases; DNA, Viral; Humans; N-Glycosyl Hydrolases; Placenta; Poly dA-dT; Polydeoxyribonucleotides; Polyethyleneimine; Sulfites; Uracil; Uracil-DNA Glycosidase | 1984 |
Characterization of the secondary structure features of Escherichia coli, Caldariella acidophila and mammalian ribosomal RNA species by chemical modification of sterically exposed bases.
Topics: Animals; Antioxidants; Bacteria; Cytosine; Escherichia coli; Hot Temperature; Hydroxylamines; Kinetics; Liver; Nucleic Acid Conformation; Rats; Ribosomes; RNA, Ribosomal; Sulfites; Uracil | 1982 |
Role of exposed cytosine residues in aminoacylation activity of tRNATrp.
Topics: Animals; Anticodon; Base Sequence; Cattle; Cytosine; Nucleic Acid Conformation; RNA, Transfer, Amino Acyl; Structure-Activity Relationship; Sulfites; Tryptophan; Tryptophan-tRNA Ligase; Uridine | 1981 |
A rapid method for mapping exposed cytosines in polyribonucleotides. Application to tRNATrp (yeast, beef liver).
Topics: Animals; Autoradiography; Base Sequence; Cattle; Cytosine; Hydroxylamines; Ribonucleases; RNA, Fungal; RNA, Transfer; Saccharomyces cerevisiae; Sulfites; Tryptophan; Uracil | 1980 |
The effect of bisulfite-induced C to U transitions on aminoacylation of Escherichia coli glycine tRNA.
Topics: Cytosine; Escherichia coli; Kinetics; Models, Molecular; Nucleic Acid Conformation; RNA, Transfer, Amino Acyl; Sulfites; Uracil | 1982 |
Specific mutator effects of ung (uracil-DNA glycosylase) mutations in Escherichia coli.
Topics: Cytosine; Deoxyuracil Nucleotides; DNA Glycosylases; DNA Repair; DNA, Bacterial; Escherichia coli; Mutation; N-Glycosyl Hydrolases; Sulfites; Uracil-DNA Glycosidase | 1982 |
N-Sulfomethylation of guanine, adenine and cytosine with formaldehyde-bisulfite. A selective modification of guanine in DNA.
Topics: Adenine; Cytosine; DNA; Formaldehyde; Guanine; Methylation; Molecular Conformation; Nucleosides; Nucleotides; Structure-Activity Relationship; Sulfites | 1982 |
Binding of wheat germ ribosomes to bisulfite-modified reovirus messenger RNA: evidence for a scanning mechanism.
Topics: Base Sequence; Codon; Cytosine; Oligonucleotides; Peptide Chain Initiation, Translational; Protein Biosynthesis; Reoviridae; Ribosomes; RNA, Messenger; RNA, Viral; Sulfites; Triticum; Uracil | 1980 |
CpNpG methylation in mammalian cells.
Topics: 3T3 Cells; 5-Methylcytosine; Animals; Base Sequence; Cell Line; Cytosine; DNA; DNA Restriction Enzymes; Methylation; Methyltransferases; Mice; Molecular Sequence Data; Mutagens; Plasmids; Sequence Analysis; Sulfites; Transfection | 1995 |
A bisulfite method of 5-methylcytosine mapping that minimizes template degradation.
Topics: 5-Methylcytosine; Base Sequence; Cytosine; DNA; DNA Modification Methylases; DNA Primers; Hydrogen-Ion Concentration; Methylation; Molecular Sequence Data; Polymerase Chain Reaction; Sequence Analysis, DNA; Sulfites; Templates, Genetic | 1995 |
High sensitivity mapping of methylated cytosines.
Topics: 5-Methylcytosine; Base Sequence; Cloning, Molecular; Cytosine; DNA Primers; DNA, Single-Stranded; Hydrogen-Ion Concentration; Kinetics; Methylation; Molecular Sequence Data; Nucleic Acid Denaturation; Polymerase Chain Reaction; Sequence Analysis, DNA; Sulfites; Uracil | 1994 |
Methylation analysis on individual chromosomes: improved protocol for bisulphite genomic sequencing.
Topics: 5-Methylcytosine; Animals; Chromosomes; Cytosine; DNA; Genome; Methylation; Mice; Polymerase Chain Reaction; Sequence Analysis, DNA; Sulfites | 1994 |
Bisulfite induces tandem double CC-->TT mutations in double-stranded DNA. 2. Kinetics of cytosine deamination.
Topics: Bacteriophage M13; Base Sequence; Cytosine; Deamination; DNA; Dose-Response Relationship, Drug; Escherichia coli; Hydrogen-Ion Concentration; Kinetics; Molecular Sequence Data; Mutagens; Sulfites; Temperature; Thymine | 1994 |
An improved method for detection of 5-methylcytosine by PCR-based genomic sequencing.
Topics: 5-Methylcytosine; Animals; Base Sequence; Cytosine; DNA; Hydrogen-Ion Concentration; Methylation; Molecular Sequence Data; Nucleic Acid Denaturation; Polymerase Chain Reaction; Sulfites | 1994 |
Kinetics of bisulfite-induced cytosine deamination in single-stranded DNA.
Topics: Bacteriophages; beta-Galactosidase; Codon; Cytosine; Deamination; DNA Glycosylases; DNA Repair; DNA, Single-Stranded; Escherichia coli; Kinetics; Mutation; N-Glycosyl Hydrolases; Sulfites; Transformation, Bacterial; Uracil; Uracil-DNA Glycosidase | 1993 |
Surface-enhanced Raman spectroscopic detection of CO2-(3), SO2-(3), and nucleic acid bases using polyvinyl alcohol film doped with Ag fine particles.
Topics: Adenine; Carbonates; Cytosine; DNA; Guanine; Membranes, Artificial; Particle Size; Polyvinyl Alcohol; Scattering, Radiation; Silver; Spectrum Analysis, Raman; Sulfites; Surface Properties; Thymine; Uracil | 1993 |
Methylation pattern of Activator transposase binding sites in maize endosperm.
Topics: 5-Methylcytosine; Base Sequence; Chromatids; Cytosine; DNA; DNA Primers; DNA Transposable Elements; Methylation; Molecular Sequence Data; Recombination, Genetic; Sulfites; Zea mays | 1996 |
Influence of DNA sequence and methylation status on bisulfite conversion of cytosine residues.
Topics: Base Sequence; Cytosine; DNA; Methylation; Molecular Sequence Data; Sequence Analysis; Sulfites | 1995 |
Cytosine methylation: quantitation by automated genomic sequencing and GENESCAN analysis.
Topics: Autoanalysis; Base Sequence; Coloring Agents; Cytosine; Deoxyribonuclease HpaII; DNA Methylation; DNA Primers; DNA-Directed DNA Polymerase; Magnetics; Microspheres; Molecular Sequence Data; Plasmids; Polymerase Chain Reaction; Sequence Analysis, DNA; Software; Sulfites; Taq Polymerase | 1996 |
Active mammalian replication origins are associated with a high-density cluster of mCpG dinucleotides.
Topics: 5-Methylcytosine; Animals; CHO Cells; CpG Islands; Cricetinae; Cytosine; Dinucleoside Phosphates; DNA; DNA Methylation; Molecular Sequence Data; Replication Origin; Ribosomal Proteins; Sulfites | 1997 |
Methylation status of Sillago japonica satellite DNA examined by bisulfite modification.
Topics: Animals; Base Sequence; Cytosine; DNA Methylation; DNA, Satellite; Fishes; Liver; Molecular Sequence Data; Oxidation-Reduction; Sulfites | 1996 |
A modified and improved method for bisulphite based cytosine methylation analysis.
Topics: Cell Line; Cytosine; DNA Methylation; Sensitivity and Specificity; Sulfites | 1996 |
Imprinted segments in the human genome: different DNA methylation patterns in the Prader-Willi/Angelman syndrome region as determined by the genomic sequencing method.
Topics: 5-Methylcytosine; Angelman Syndrome; Autoantigens; Chromosomes, Human, Pair 15; Cloning, Molecular; CpG Islands; Cytosine; Dinucleoside Phosphates; DNA Methylation; Female; Genomic Imprinting; Humans; Male; Plasmids; Polymerase Chain Reaction; Prader-Willi Syndrome; Promoter Regions, Genetic; Restriction Mapping; Ribonucleoproteins, Small Nuclear; Sequence Analysis, DNA; Sequence Deletion; snRNP Core Proteins; Sulfites | 1997 |
Use of a single sequencing termination reaction to distinguish between cytosine and 5-methylcytosine in bisulfite-modified DNA.
Topics: 5-Methylcytosine; Base Sequence; Cytosine; DNA; DNA Methylation; DNA Primers; Polymerase Chain Reaction; Sequence Analysis, DNA; Sulfites | 1997 |
A 5' 2-kilobase-pair region of the imprinted mouse H19 gene exhibits exclusive paternal methylation throughout development.
Topics: Alleles; Animals; Blastocyst; Cytosine; DNA Methylation; Embryonic and Fetal Development; Genes; Genomic Imprinting; Mice; Mice, Inbred C57BL; Molecular Sequence Data; Muscle Proteins; Mutagenesis; Promoter Regions, Genetic; RNA, Long Noncoding; RNA, Untranslated; Sulfites; Transcription, Genetic | 1997 |
Epigenetic variation illustrated by DNA methylation patterns of the fragile-X gene FMR1.
Topics: Alleles; Base Sequence; Chromosome Aberrations; Cloning, Molecular; CpG Islands; Cytosine; DNA; DNA Methylation; Female; Fragile X Mental Retardation Protein; Fragile X Syndrome; Genetic Variation; Humans; Male; Molecular Sequence Data; Nerve Tissue Proteins; Polymerase Chain Reaction; Promoter Regions, Genetic; RNA-Binding Proteins; Sulfites; Time Factors; X Chromosome | 1997 |
Detection and measurement of PCR bias in quantitative methylation analysis of bisulphite-treated DNA.
Topics: 5-Methylcytosine; Animals; Base Composition; Cell Line; Cytosine; DNA; DNA Methylation; DNA Primers; Genes, Retinoblastoma; Humans; Mice; Polymerase Chain Reaction; Sensitivity and Specificity; Sulfites | 1997 |
Bisulfite sequencing in preimplantation embryos: DNA methylation profile of the upstream region of the mouse imprinted H19 gene.
Topics: Alleles; Animals; Base Sequence; Blastocyst; Cytosine; DNA Methylation; Genomic Imprinting; Mice; Mice, Inbred Strains; Molecular Sequence Data; Muscle Proteins; Polymerase Chain Reaction; RNA, Long Noncoding; RNA, Untranslated; Sequence Analysis, DNA; Sulfites | 1998 |
Urea improves efficiency of bisulphite-mediated sequencing of 5'-methylcytosine in genomic DNA.
Topics: 5-Methylcytosine; Base Sequence; Cytosine; DNA, Single-Stranded; Genes, MDR; Genome, Human; Humans; Indicators and Reagents; Polymerase Chain Reaction; Sequence Analysis, DNA; Sulfites; Urea | 1998 |
Cytosines adjacent to methylated CpG sites can be partially resistant to conversion in genomic bisulfite sequencing leading to methylation artifacts.
Topics: 5-Methylcytosine; Artifacts; CpG Islands; Cytosine; DNA Methylation; Sequence Analysis, DNA; Sulfites | 1998 |
High-resolution analysis of cytosine methylation in the 5ĺong terminal repeat of retroviral vectors.
Topics: Animals; Blotting, Northern; Carcinoma, Embryonal; CpG Islands; Cytosine; DNA Methylation; DNA Primers; Gene Expression Regulation, Viral; Genetic Vectors; Mice; Moloney murine leukemia virus; Retroviridae; Sequence Analysis, DNA; Sulfites; Terminal Repeat Sequences; Thy-1 Antigens; Tumor Cells, Cultured | 1998 |
Complex methylation patterns analyzed by single-strand conformation polymorphism.
Topics: Cloning, Molecular; Cytosine; DNA Methylation; DNA Primers; DNA, Neoplasm; Genome; HT29 Cells; Humans; Polymorphism, Single-Stranded Conformational; Sulfites | 1999 |
S1 SINE retroposons are methylated at symmetrical and non-symmetrical positions in Brassica napus: identification of a preferred target site for asymmetrical methylation.
Topics: 5-Methylcytosine; Brassica; Cytosine; DNA Methylation; DNA, Plant; In Situ Hybridization, Fluorescence; Short Interspersed Nucleotide Elements; Sulfites | 1999 |
Novel procedure for the detection of 5-methylcytosine.
Topics: 5-Methylcytosine; Base Composition; Cytosine; DNA; DNA Methylation; DNA Modification Methylases; Genetic Techniques; Molecular Sequence Data; Plasmids; Sequence Analysis, DNA; Sulfites | 1998 |
Bisulfite sequencing protocol displays both 5-methylcytosine and N4-methylcytosine.
Topics: 5-Methylcytosine; Base Sequence; Cytosine; DNA; DNA Methylation; DNA Primers; DNA, Bacterial; Escherichia coli; Plasmids; Sequence Analysis, DNA; Sulfites | 1999 |
Quantification of 5-methylcytosine in DNA by the chloroacetaldehyde reaction.
Topics: 5-Methylcytosine; Acetaldehyde; Borohydrides; Chemical Precipitation; Chromatography, High Pressure Liquid; Cinnamates; Cytosine; DNA; DNA Methylation; Fluorescent Dyes; Hydrogen-Ion Concentration; Hydrolysis; Hygromycin B; Purines; Silver Nitrate; Solutions; Spectrometry, Fluorescence; Sulfites | 1999 |
Symmetric and asymmetric DNA methylation in the human IGF2-H19 imprinted region.
Topics: Adult; Alleles; CpG Islands; Cytosine; DNA; DNA Methylation; Exons; Fetus; Genomic Imprinting; Humans; Insulin-Like Growth Factor II; Kidney; Molecular Sequence Data; Mosaicism; Muscle Proteins; Myocardium; Polymerase Chain Reaction; Promoter Regions, Genetic; RNA, Long Noncoding; RNA, Untranslated; Sequence Analysis, DNA; Sulfites | 2000 |
PCR amplification in bisulfite methylcytosine mapping in the GC-rich promoter region of amyloid precursor protein gene in autopsy human brain.
Topics: Aged; Aged, 80 and over; Aging; Amyloid beta-Protein Precursor; Base Sequence; Cadaver; Cerebral Cortex; Cytosine; DNA Methylation; Genome; Humans; Male; Molecular Sequence Data; Polymerase Chain Reaction; Promoter Regions, Genetic; Sensitivity and Specificity; Sulfites; Temperature; Tissue Distribution | 2000 |
Novel subtype of type IIs restriction enzymes. BfiI endonuclease exhibits similarities to the EDTA-resistant nuclease Nuc of Salmonella typhimurium.
Topics: Amino Acid Sequence; Bacterial Proteins; Catalytic Domain; Cloning, Molecular; Cytosine; Deoxyribonucleases, Type II Site-Specific; DNA Methylation; DNA Restriction Enzymes; DNA-Cytosine Methylases; DNA, Complementary; Dose-Response Relationship, Drug; Edetic Acid; Endonucleases; Hydrogen-Ion Concentration; Hydrolysis; Kinetics; Magnesium; Micrococcal Nuclease; Molecular Sequence Data; Mutagenesis, Site-Directed; Nitrophenols; Oligonucleotides; Plasmids; Protein Folding; Protein Structure, Tertiary; Salmonella typhimurium; Sequence Analysis, DNA; Sequence Homology, Amino Acid; Sulfites; Time Factors | 2000 |
Microsoft Word macro for analysis of cytosine methylation by the bisulfite deamination reaction.
Topics: Base Sequence; CpG Islands; Cytosine; Deamination; DNA; DNA Methylation; Molecular Sequence Data; Sequence Analysis, DNA; Software; Sulfites | 2001 |
Bisulfite-induced cytosine deamination rates in E. coli SSB:DNA complexes.
Topics: Cytosine; Deamination; DNA-Binding Proteins; DNA, Single-Stranded; Escherichia coli; Gene Frequency; Macromolecular Substances; Mutation; Sulfites | 2001 |
Bisulfite genomic sequencing: systematic investigation of critical experimental parameters.
Topics: 5-Methylcytosine; Amination; Bacteriophage M13; Base Sequence; Chromatography, High Pressure Liquid; Cloning, Molecular; Cytosine; DNA; DNA Methylation; DNA Primers; DNA, Single-Stranded; DNA, Viral; Genome; Molecular Sequence Data; Nucleic Acid Denaturation; Plasmids; Polymerase Chain Reaction; Sensitivity and Specificity; Sequence Analysis, DNA; Sulfites; Temperature; Templates, Genetic; Uracil | 2001 |
Novel methylation at GpC dinucleotide in the fish Sparus aurata genome.
Topics: Animals; Base Sequence; Blotting, Southern; Centromere; Chromatin; Cloning, Molecular; CpG Islands; Cytosine; DNA; DNA Methylation; Genome; Male; Molecular Sequence Data; Nucleic Acid Hybridization; Polymerase Chain Reaction; Sea Bream; Sulfites; Tissue Distribution | 2000 |
Satellite 2 methylation patterns in normal and ICF syndrome cells and association of hypomethylation with advanced replication.
Topics: Animals; Base Sequence; Blotting, Southern; Cells, Cultured; Centromere; Cloning, Molecular; Consensus Sequence; Conserved Sequence; CpG Islands; Cricetinae; Cytosine; DNA (Cytosine-5-)-Methyltransferases; DNA Methylation; DNA Methyltransferase 3B; DNA Replication; DNA, Satellite; Face; Female; Heterochromatin; Humans; Immunologic Deficiency Syndromes; Male; Molecular Sequence Data; Sulfites; Time Factors | 2001 |
Aberrant methylation and histone deacetylation of cyclooxygenase 2 in gastric cancer.
Topics: Antimetabolites, Antineoplastic; Apoptosis; Azacitidine; Cyclooxygenase 2; Cytosine; Decitabine; DNA; DNA Methylation; Enzyme Inhibitors; Gastric Mucosa; Gene Silencing; Histone Deacetylases; Histones; Humans; Hydroxamic Acids; Immunohistochemistry; Isoenzymes; Membrane Proteins; Methylation; Polymorphism, Single-Stranded Conformational; Precipitin Tests; Promoter Regions, Genetic; Prostaglandin-Endoperoxide Synthases; Reverse Transcriptase Polymerase Chain Reaction; Stomach Neoplasms; Sulfites; Transcription, Genetic; Tumor Cells, Cultured | 2002 |
Differential patterns of methylation of the IFN-gamma promoter at CpG and non-CpG sites underlie differences in IFN-gamma gene expression between human neonatal and adult CD45RO- T cells.
Topics: 5-Methylcytosine; Adenine; Adult; Calcium-Binding Proteins; CD3 Complex; CD4-Positive T-Lymphocytes; CD8-Positive T-Lymphocytes; Cloning, Molecular; CpG Islands; Cytosine; Dinucleotide Repeats; DNA Methylation; DNA Methyltransferase 3A; DNA-Binding Proteins; Fetal Blood; Gene Expression Regulation; Humans; Infant, Newborn; Interferon-gamma; Interleukin-4; Leukocyte Common Antigens; Microfilament Proteins; Promoter Regions, Genetic; Sequence Analysis, DNA; Sulfites; T-Lymphocyte Subsets; Thymine; Tumor Necrosis Factor-alpha | 2002 |
DNA methylation analysis in mammalian cells.
Topics: Animals; Cytosine; DNA Methylation; Mammals; Polymerase Chain Reaction; Sulfites | 2002 |
Identification and resolution of artifacts in bisulfite sequencing.
Topics: 5-Methylcytosine; Artifacts; Cytosine; DNA Primers; False Positive Reactions; Polymerase Chain Reaction; Sequence Analysis, DNA; Sulfites | 2002 |
Profiling DNA methylation by melting analysis.
Topics: 5-Methylcytosine; Cytosine; DNA Methylation; Hot Temperature; Nucleic Acid Denaturation; Polymerase Chain Reaction; Sulfites; Thermodynamics | 2002 |
An analytical method for the detection of methylation differences at specific chromosomal loci using primer extension and ion pair reverse phase HPLC.
Topics: Ampicillin Resistance; Angelman Syndrome; Base Sequence; Chromatography, High Pressure Liquid; Chromatography, Ion Exchange; CpG Islands; Cytosine; Deamination; DNA; DNA Methylation; DNA Primers; Genetic Markers; Genomic Imprinting; Humans; Molecular Sequence Data; Mutagenesis, Site-Directed; Nucleic Acid Amplification Techniques; Polymerase Chain Reaction; Prader-Willi Syndrome; Sulfites; Uracil | 2002 |
Parallel assessment of CpG methylation by two-color hybridization with oligonucleotide arrays.
Topics: Base Sequence; Carbocyanines; Cloning, Molecular; CpG Islands; Cytosine; DNA Methylation; DNA Primers; DNA, Neoplasm; Genes, Tumor Suppressor; Humans; Nucleic Acid Hybridization; Oligonucleotide Array Sequence Analysis; Promoter Regions, Genetic; Reference Standards; Sulfites; Tumor Cells, Cultured | 2002 |
An Arabidopsis SET domain protein required for maintenance but not establishment of DNA methylation.
Topics: Aldose-Ketose Isomerases; Amino Acid Sequence; Arabidopsis; Arabidopsis Proteins; Cloning, Molecular; Cytosine; DNA Methylation; DNA Mutational Analysis; DNA-Cytosine Methylases; Gene Silencing; Histone-Lysine N-Methyltransferase; Histones; Models, Genetic; Molecular Sequence Data; Mutation; Phenotype; Protein Binding; Protein Structure, Tertiary; Sulfites; Transgenes | 2002 |
Methylation-specific PCR.
Topics: Base Sequence; Cytosine; DNA; DNA Methylation; DNA Primers; Indicators and Reagents; Polymerase Chain Reaction; Sensitivity and Specificity; Sulfites | 2002 |
Methylation status of uPA promoter as a molecular mechanism regulating prostate cancer invasion and growth in vitro and in vivo.
Topics: Animals; Base Sequence; Blotting, Southern; Cell Division; Cytosine; DNA Methylation; Gene Expression Regulation, Neoplastic; Gene Silencing; Humans; Male; Mice; Mice, Inbred BALB C; Mice, Nude; Molecular Sequence Data; Neoplasm Invasiveness; Polymerase Chain Reaction; Promoter Regions, Genetic; Prostate; Prostatic Neoplasms; RNA, Messenger; Sequence Analysis, DNA; Sulfites; Tumor Cells, Cultured; Urokinase-Type Plasminogen Activator | 2003 |
Targeted cytosine methylation for in vivo detection of protein-DNA interactions.
Topics: Binding Sites; Chromatin; Cytosine; DNA; DNA Methylation; DNA-Binding Proteins; Gene Silencing; Genetic Techniques; Models, Genetic; Precipitin Tests; Promoter Regions, Genetic; Protein Binding; Saccharomyces cerevisiae Proteins; Sulfites; Time Factors; Transcription Factors; Transcriptional Activation; Yeasts | 2003 |
Hairpin-bisulfite PCR: assessing epigenetic methylation patterns on complementary strands of individual DNA molecules.
Topics: Alleles; Base Sequence; Chromosomes, Human, X; CpG Islands; Cytosine; DNA; DNA Methylation; DNA Transposable Elements; Dosage Compensation, Genetic; Epigenesis, Genetic; Female; Fragile X Mental Retardation Protein; Humans; Molecular Sequence Data; Nerve Tissue Proteins; Nucleic Acid Conformation; Polymerase Chain Reaction; RNA-Binding Proteins; Sequence Homology, Nucleic Acid; Sulfites | 2004 |
Frequent hypermethylation of 5' flanking region of TIMP-2 gene in cervical cancer.
Topics: Alleles; Cell Line, Tumor; CpG Islands; Cytosine; DNA; DNA Methylation; Female; HeLa Cells; Humans; Reverse Transcriptase Polymerase Chain Reaction; RNA, Messenger; Sulfites; Tissue Inhibitor of Metalloproteinase-2; Transcription, Genetic; Uterine Cervical Neoplasms | 2004 |
Methylation in the core-promoter region of the chondromodulin-I gene determines the cell-specific expression by regulating the binding of transcriptional activator Sp3.
Topics: 5-Methylcytosine; Azacitidine; Binding Sites; Blotting, Western; Bone and Bones; Cartilage; Cell Line, Tumor; Chondrocytes; Chromatin; CpG Islands; Cytosine; Decitabine; DNA Methylation; DNA-Binding Proteins; Genes, Reporter; Humans; Intercellular Signaling Peptides and Proteins; Luciferases; Membrane Proteins; Precipitin Tests; Promoter Regions, Genetic; Protein Binding; Reverse Transcriptase Polymerase Chain Reaction; RNA Interference; RNA, Messenger; RNA, Small Interfering; Sp1 Transcription Factor; Sp3 Transcription Factor; Sulfites; Thymine; Transcription Factors; Transcription, Genetic | 2004 |
Epigenomic changes during leukemia cell differentiation: analysis of histone acetylation and cytosine methylation using CpG island microarrays.
Topics: Acetylation; Cell Differentiation; Chromatin; CpG Islands; Cytosine; Databases, Genetic; DNA; Gene Library; Histones; Humans; Immunoprecipitation; In Situ Hybridization; Keratolytic Agents; Leukemia; Methylation; Oligonucleotide Array Sequence Analysis; Reverse Transcriptase Polymerase Chain Reaction; Sulfites; Tretinoin | 2004 |
Hypermethylation of the inducible nitric-oxide synthase gene promoter inhibits its transcription.
Topics: Animals; Binding, Competitive; Blotting, Western; Cells, Cultured; Chromatin; Chromatin Immunoprecipitation; Chromatography, High Pressure Liquid; Cytosine; DNA (Cytosine-5-)-Methyltransferases; DNA Methylation; DNA Methyltransferase 3B; DNA-Binding Proteins; Dose-Response Relationship, Drug; Enhancer Elements, Genetic; Gene Expression Regulation, Enzymologic; Genes, Reporter; Interleukin-1; Mice; NF-kappa B; Nitric Oxide; Nitric Oxide Synthase; Nitric Oxide Synthase Type II; Nitrites; Oligonucleotides, Antisense; Plasmids; Promoter Regions, Genetic; Reverse Transcriptase Polymerase Chain Reaction; Sulfites; Transcription, Genetic; Transfection | 2004 |
Epigenetic silencing of the human nucleotide excision repair gene, hHR23B, in interleukin-6-responsive multiple myeloma KAS-6/1 cells.
Topics: Base Sequence; Cell Line, Tumor; CpG Islands; Culture Media; Cytidine; Cytosine; DNA; DNA Damage; DNA Methylation; DNA Repair; DNA Repair Enzymes; DNA-Binding Proteins; DNA, Complementary; Dose-Response Relationship, Radiation; Down-Regulation; Gene Expression Regulation; Gene Expression Regulation, Neoplastic; Gene Silencing; Genes, Reporter; Humans; Interleukin-6; Karyotyping; Kinetics; Molecular Sequence Data; Multiple Myeloma; Plasmids; Promoter Regions, Genetic; Pyrimidine Nucleosides; Reverse Transcriptase Polymerase Chain Reaction; RNA, Messenger; Sulfites; Transcription, Genetic; Ultraviolet Rays | 2005 |
DNA methylation profiling of the human major histocompatibility complex: a pilot study for the human epigenome project.
Topics: CpG Islands; Cytosine; Databases, Genetic; DNA Methylation; Epigenesis, Genetic; Exons; Gene Expression Regulation; Genetic Variation; Genome, Human; Human Genome Project; Humans; Internet; Introns; Major Histocompatibility Complex; Mass Spectrometry; Pilot Projects; Polymerase Chain Reaction; RNA, Messenger; Sequence Analysis, DNA; Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization; Sulfites; Tissue Distribution | 2004 |
Entamoeba histolytica DNA methyltransferase (Ehmeth) is a nuclear matrix protein that binds EhMRS2, a DNA that includes a scaffold/matrix attachment region (S/MAR).
Topics: Animals; Blotting, Southwestern; Cation Transport Proteins; Cytosine; DNA (Cytosine-5-)-Methyltransferases; DNA Methylation; DNA, Protozoan; Entamoeba histolytica; Matrix Attachment Regions; Nuclear Matrix-Associated Proteins; Protein Binding; Sulfites | 2005 |
Hemimethylation and non-CpG methylation levels in a promoter region of human LINE-1 (L1) repeated elements.
Topics: Base Sequence; CpG Islands; Cytosine; DNA Methylation; Evolution, Molecular; Female; Fibroblasts; Humans; Long Interspersed Nucleotide Elements; Molecular Sequence Data; Oligonucleotides, Antisense; Polymerase Chain Reaction; Promoter Regions, Genetic; Sequence Homology, Nucleic Acid; Sulfites | 2005 |
Synthesis of universal unmethylated control DNA by nested whole genome amplification with phi29 DNA polymerase.
Topics: Bacillus Phages; Base Sequence; CpG Islands; Cytosine; DNA Methylation; DNA-Cytosine Methylases; DNA-Directed DNA Polymerase; Genome, Human; Humans; Lymphocytes; Microsatellite Repeats; Molecular Sequence Data; Promoter Regions, Genetic; Protein Isoforms; Sequence Analysis, DNA; Sulfites | 2005 |
Effects of methylation of non-CpG sequence in the promoter region on the expression of human synaptotagmin XI (syt11).
Topics: Animals; Base Sequence; Binding Sites; Binding, Competitive; Calcium-Binding Proteins; Cell Line; Cell Line, Tumor; CHO Cells; CpG Islands; Cricetinae; Cricetulus; Cytosine; DNA; DNA Methylation; DNA-Binding Proteins; Electrophoretic Mobility Shift Assay; Gene Expression Regulation; Humans; Luciferases; Membrane Glycoproteins; Molecular Sequence Data; Nerve Tissue Proteins; Oligonucleotides; Plasmids; Polymerase Chain Reaction; Promoter Regions, Genetic; Sequence Analysis, DNA; Sp1 Transcription Factor; Sp3 Transcription Factor; Sulfites; Synaptotagmins; Transcription Factors; Transcription Initiation Site; Transcription, Genetic; Transfection | 2005 |
High-speed conversion of cytosine to uracil in bisulfite genomic sequencing analysis of DNA methylation.
Topics: Base Sequence; Cell Line, Tumor; CpG Islands; Cytosine; DNA; DNA Methylation; Genetic Techniques; Humans; Models, Genetic; Molecular Sequence Data; Molecular Weight; Polymerase Chain Reaction; Sequence Analysis, DNA; Sulfites; Temperature; Time Factors; Uracil | 2004 |
Single nucleotide extension technology for quantitative site-specific evaluation of metC/C in GC-rich regions.
Topics: Base Composition; Base Pair Mismatch; Base Sequence; Cytosine; DNA Methylation; DNA Primers; GC Rich Sequence; Humans; Molecular Sequence Data; Oligonucleotides; Polymorphism, Genetic; Sequence Analysis, DNA; Sulfites; Templates, Genetic | 2005 |
Reelin promoter hypermethylation in schizophrenia.
Topics: Binding, Competitive; Cell Adhesion Molecules, Neuronal; CpG Islands; Cytosine; DNA; DNA Methylation; Extracellular Matrix Proteins; Gene Expression Regulation; Genes, Reporter; Humans; Kinetics; Models, Genetic; Nerve Tissue Proteins; Oligonucleotides; Promoter Regions, Genetic; Reelin Protein; RNA, Messenger; Schizophrenia; Sequence Analysis, DNA; Serine Endopeptidases; Sulfites; Time Factors; Transfection | 2005 |
Sequence analysis of the 5'-flanking regions of human dihydropyrimidine dehydrogenase gene: identification of a new polymorphism related with effects of 5-fluorouracil.
Topics: Antimetabolites, Antineoplastic; Cell Line, Tumor; CpG Islands; Cytosine; Dihydrouracil Dehydrogenase (NADP); DNA Methylation; DNA Primers; Down-Regulation; Fluorouracil; Gene Expression Regulation, Neoplastic; Heterozygote; Humans; Liver; Models, Genetic; Mutation; Oligonucleotide Array Sequence Analysis; Polymerase Chain Reaction; Polymorphism, Genetic; Polymorphism, Restriction Fragment Length; Sequence Analysis, DNA; Sulfites; Transcription, Genetic | 2005 |
MethylMapper: a method for high-throughput, multilocus bisulfite sequence analysis and reporting.
Topics: Base Sequence; Chromosome Mapping; Cloning, Molecular; CpG Islands; Cytosine; DNA; DNA Methylation; Epigenesis, Genetic; Humans; Internet; Molecular Sequence Data; Phenotype; Sequence Analysis, DNA; Sequence Homology, Nucleic Acid; Software; Sulfites; Thymine | 2005 |
Targeting of the activation-induced cytosine deaminase is strongly influenced by the sequence and structure of the targeted DNA.
Topics: Ampicillin Resistance; Base Sequence; Cytidine Deaminase; Cytosine; Cytosine Deaminase; Deamination; DNA; Humans; Kanamycin Resistance; Mutagenesis; Mutation; Nucleic Acid Conformation; Sulfites; Transcription, Genetic | 2005 |
DNA cytosine methylation profile in various cancer-related genes is altered in cultured rat hepatocyte cell lines as compared with primary hepatocytes.
Topics: Animals; Cell Culture Techniques; Cells, Cultured; CpG Islands; Cytosine; DNA Methylation; Genes, Neoplasm; Hepatocytes; Neoplasms; Rats; Reverse Transcriptase Polymerase Chain Reaction; RNA; Sulfites | 2006 |
Rapid quantification of DNA methylation through dNMP analysis following bisulfite-PCR.
Topics: Cytosine; Deoxyribonucleotides; DNA Methylation; Electrophoresis, Capillary; Hydrolysis; Polymerase Chain Reaction; Reference Standards; Sulfites | 2006 |
DNA methylation mapping by tag-modified bisulfite genomic sequencing.
Topics: Base Sequence; Cells, Cultured; CpG Islands; Cytosine; DNA; DNA Methylation; Humans; Polymerase Chain Reaction; Sequence Analysis, DNA; Sulfites | 2006 |
Accelerated bisulfite-deamination of cytosine in the genomic sequencing procedure for DNA methylation analysis.
Topics: Animals; Base Composition; Chromatography, High Pressure Liquid; Cytosine; Deamination; DNA Methylation; Genome; Male; Nucleosides; Salmon; Sequence Analysis, DNA; Sulfites; Testis | 2004 |
Does urea promote the bisulfite-mediated deamination of cytosine in DNA? Investigation aiming at speeding-up the procedure for DNA methylation analysis.
Topics: 5-Methylcytosine; Cell Line, Tumor; Cytosine; Deamination; DNA; DNA Methylation; Humans; Polymerase Chain Reaction; Sequence Analysis, DNA; Sulfites; Urea | 2006 |
Degradation of DNA by bisulfite treatment.
Topics: Absorption; Chemistry, Pharmaceutical; Cytosine; DNA; Drug Design; Epigenesis, Genetic; Gene Expression; Models, Chemical; Molecular Conformation; Polymerase Chain Reaction; Polymers; Reverse Transcriptase Polymerase Chain Reaction; Sulfites; Time Factors | 2007 |
Chemistry of bisulfite genomic sequencing; advances and issues.
Topics: 5-Methylcytosine; Cell Line, Tumor; Cytosine; Deamination; DNA Methylation; Genomics; Humans; Quaternary Ammonium Compounds; Sequence Analysis, DNA; Sulfites; Urea | 2007 |
Massively parallel bisulphite pyrosequencing reveals the molecular complexity of breast cancer-associated cytosine-methylation patterns obtained from tissue and serum DNA.
Topics: Biomarkers, Tumor; Breast Neoplasms; Cytosine; DNA Methylation; DNA, Neoplasm; Female; Humans; Quantitative Trait Loci; Sequence Analysis, DNA; Sulfites | 2008 |
Genome-wide, high-resolution DNA methylation profiling using bisulfite-mediated cytosine conversion.
Topics: Arabidopsis; Cytosine; DNA Methylation; Genomics; Nucleic Acid Amplification Techniques; Oligonucleotide Array Sequence Analysis; Polymorphism, Genetic; Sulfites | 2008 |
Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning.
Topics: 5-Methylcytosine; Animals; Arabidopsis; Base Sequence; Computational Biology; Cytosine; DNA Methylation; Gene Expression Regulation, Plant; Gene Library; Genome, Plant; Mice; Mutation; Promoter Regions, Genetic; Reproducibility of Results; Sequence Analysis, DNA; Sulfites; Uracil | 2008 |
Cloning and characterization of uracil-DNA glycosylase and the biological consequences of the loss of its function in the nematode Caenorhabditis elegans.
Topics: Amino Acid Sequence; Animals; Caenorhabditis elegans; Cloning, Molecular; Conserved Sequence; Cytosine; Deamination; Molecular Sequence Data; Mutation; Protein Structure, Tertiary; Sulfites; Uracil-DNA Glycosidase | 2008 |
The reaction of cytosine with bisulfite by base flipping from the duplex.
Topics: 5-Methylcytosine; Base Pair Mismatch; Carbamates; Chromatography, High Pressure Liquid; Cytosine; DNA; Hydroxylamine; Naphthyridines; Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization; Sulfites | 2008 |
Errors in the bisulfite conversion of DNA: modulating inappropriate- and failed-conversion frequencies.
Topics: 5-Methylcytosine; Cytosine; DNA; DNA Methylation; DNA, Single-Stranded; Nucleic Acid Conformation; Oligonucleotides; Polymerase Chain Reaction; Sequence Analysis, DNA; Sulfites; Temperature | 2008 |
Melting curve assays for DNA methylation analysis.
Topics: Base Sequence; Cytosine; DNA; DNA Methylation; DNA Modification Methylases; DNA Primers; DNA Repair Enzymes; Humans; Nucleic Acid Amplification Techniques; Nucleic Acid Denaturation; Polymerase Chain Reaction; Sulfites; Tumor Suppressor Proteins | 2009 |
MethylQuant: a real-time PCR-based method to quantify DNA methylation at single specific cytosines.
Topics: CpG Islands; Cytosine; DNA; DNA Methylation; DNA Primers; Polymerase Chain Reaction; Polymorphism, Single Nucleotide; Sulfites | 2009 |
RNA cytosine methylation analysis by bisulfite sequencing.
Topics: 5-Methylcytosine; Animals; Cytosine; Drosophila melanogaster; Methylation; RNA; RNA, Ribosomal, 16S; RNA, Transfer, Asp; Sequence Analysis, RNA; Sulfites | 2009 |
DNA methylation and mRNA expression of SYN III, a candidate gene for schizophrenia.
Topics: Animals; Brain; CpG Islands; Cytosine; DNA; DNA Methylation; Gene Expression; Genetic Predisposition to Disease; Humans; Organ Specificity; Reverse Transcriptase Polymerase Chain Reaction; RNA, Messenger; Schizophrenia; Sequence Analysis, DNA; Species Specificity; Sulfites; Synapsins; Tissue Distribution | 2008 |
Conformational variants of duplex DNA correlated with cytosine-rich chromosomal fragile sites.
Topics: Chromosome Fragility; Chromosomes, Human; Circular Dichroism; Crystallography, X-Ray; Cytosine; DNA; DNA, Superhelical; Exons; Genes, bcl-1; Genes, bcl-2; Genes, myc; Humans; Lymphoma; Nucleic Acid Conformation; Oligodeoxyribonucleotides; Plasmids; Sulfites | 2009 |
Reaction of cytosine with bisulfite and hydroxylamine.
Topics: Cytosine; Hydroxylamine; Oligodeoxyribonucleotides; Sulfites; Sulfonic Acids; Uracil | 2009 |
Progress in the bisulfite modification of nucleic acids.
Topics: Cytosine; DNA; Kinetics; Quaternary Ammonium Compounds; Sulfites; Uridine | 2009 |
Enzymatic incorporation of multiple dyes for increased sensitivity in QD-FRET sensing for DNA methylation detection.
Topics: Cell Line, Tumor; Cytosine; DNA; DNA Methylation; Enzymes; Fluorescence Resonance Energy Transfer; Fluorescent Dyes; Humans; Quantum Dots; Sulfites; Tumor Suppressor Protein p14ARF | 2010 |
Accurate sodium bisulfite sequencing in plants.
Topics: Arabidopsis; Base Sequence; Cytosine; DNA Methylation; Epigenesis, Genetic; Genetic Techniques; Molecular Sequence Data; Plants; Sequence Analysis, DNA; Sequence Homology, Nucleic Acid; Sulfites; Uracil | 2010 |
The behaviour of 5-hydroxymethylcytosine in bisulfite sequencing.
Topics: 5-Methylcytosine; Base Sequence; Chromatography, Liquid; Cytosine; Mass Spectrometry; Molecular Sequence Data; Polymerase Chain Reaction; Sulfites | 2010 |
Analysis of DNA methylation in plants by bisulfite sequencing.
Topics: Arabidopsis; Base Sequence; Cytosine; DNA Methylation; DNA, Plant; Genome; Seedlings; Sequence Analysis, DNA; Sulfites | 2010 |
Analysis of bisulfite sequencing data from plant DNA using CyMATE.
Topics: Cytosine; DNA Methylation; DNA, Plant; Inverted Repeat Sequences; Plants; Sequence Alignment; Sequence Analysis, DNA; Software; Sulfites | 2010 |
Analysis of locus-specific changes in methylation patterns using a COBRA (combined bisulfite restriction analysis) assay.
Topics: Cytosine; DNA; DNA Methylation; DNA Restriction Enzymes; Genetic Loci; Sequence Analysis, DNA; Sulfites | 2010 |
Examination of the specificity of DNA methylation profiling techniques towards 5-methylcytosine and 5-hydroxymethylcytosine.
Topics: 5-Methylcytosine; Antibodies; Cytosine; DNA; DNA Methylation; DNA-Binding Proteins; Electrophoretic Mobility Shift Assay; Immunoprecipitation; Oligonucleotides; Sequence Analysis, DNA; Sulfites | 2010 |
DNA cytosine methylation in the bovine leukemia virus promoter is associated with latency in a lymphoma-derived B-cell line: potential involvement of direct inhibition of cAMP-responsive element (CRE)-binding protein/CRE modulator/activation transcription
Topics: Activating Transcription Factor 1; B-Lymphocytes; Chromatin; Cyclic AMP; Cyclic AMP Response Element Modulator; Cyclic AMP Response Element-Binding Protein; Cytosine; DNA; DNA Methylation; Enzyme-Linked Immunosorbent Assay; Humans; Leukemia Virus, Bovine; Lymphoma; Plasmids; Promoter Regions, Genetic; Sulfites | 2010 |
Enzymatic approaches and bisulfite sequencing cannot distinguish between 5-methylcytosine and 5-hydroxymethylcytosine in DNA.
Topics: 5-Methylcytosine; CpG Islands; Cytosine; DNA; DNA Methylation; DNA Restriction Enzymes; Genes, BRCA1; Humans; Octamer Transcription Factor-3; Polymerase Chain Reaction; Sequence Analysis, DNA; Sulfites | 2010 |
Bisulphite sequencing of plant genomic DNA.
Topics: 5-Methylcytosine; Base Sequence; Cytosine; DNA Methylation; DNA, Plant; DNA, Single-Stranded; Epigenomics; Genome, Plant; Plants; Polymerase Chain Reaction; Sequence Analysis, DNA; Sulfites; Uracil | 2010 |
Comparison of sequencing-based methods to profile DNA methylation and identification of monoallelic epigenetic modifications.
Topics: Alleles; Cell Line; CpG Islands; Cytosine; DNA Methylation; Embryonic Stem Cells; Epigenesis, Genetic; Gene Expression Regulation; Humans; Sequence Analysis, DNA; Sulfites | 2010 |
Detection of cytosine methylation in RNA using bisulfite sequencing.
Topics: Cytosine; Methylation; RNA; RNA Processing, Post-Transcriptional; Sequence Analysis, RNA; Sulfites | 2010 |
MethylViewer: computational analysis and editing for bisulfite sequencing and methyltransferase accessibility protocol for individual templates (MAPit) projects.
Topics: Adaptor Proteins, Signal Transducing; Cell Line, Tumor; Chromatin; Computational Biology; CpG Islands; Cytidine; Cytosine; DNA; DNA (Cytosine-5-)-Methyltransferases; DNA Methylation; Humans; Image Enhancement; MutL Protein Homolog 1; Nuclear Proteins; Sequence Alignment; Sequence Analysis, DNA; Software; Sulfites | 2011 |
Conservation and divergence of DNA methylation in eukaryotes: new insights from single base-resolution DNA methylomes.
Topics: Animals; CpG Islands; Cytosine; DNA Methylation; Embryonic Stem Cells; Epigenomics; Eukaryota; Evolution, Molecular; Fungi; Genome; Humans; Neoplasms; Plants; Sequence Analysis, DNA; Sulfites | 2011 |
Reprogramming of the paternal genome upon fertilization involves genome-wide oxidation of 5-methylcytosine.
Topics: 5-Methylcytosine; Animals; Cellular Reprogramming; Chromosomal Proteins, Non-Histone; Cleavage Stage, Ovum; Cytosine; DNA-Binding Proteins; Embryo, Mammalian; Female; Fertilization; Gene Expression Regulation, Developmental; Genome; Male; Mice; Oocytes; Oxidation-Reduction; Repressor Proteins; Sequence Analysis, DNA; Sulfites; Zygote | 2011 |
Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications.
Topics: Cytosine; DNA; DNA Methylation; Sequence Analysis, DNA; Software; Sulfites | 2011 |
Bisulfite sequencing for cytosine-methylation analysis in plants.
Topics: Base Sequence; Cytosine; DNA Methylation; Genes, Plant; Molecular Sequence Data; Plants, Genetically Modified; Polymerase Chain Reaction; RNA Interference; Sequence Analysis, DNA; Sulfites | 2011 |
A sustained dietary change increases epigenetic variation in isogenic mice.
Topics: 5-Methylcytosine; Alleles; Animals; CpG Islands; Cytosine; Dietary Supplements; DNA Methylation; Environment; Epigenesis, Genetic; Gene Expression; Genetic Loci; Genetic Variation; Mice; Mice, Inbred C57BL; Phenotype; Principal Component Analysis; Promoter Regions, Genetic; Repetitive Sequences, Nucleic Acid; Stochastic Processes; Sulfites | 2011 |
MethylCoder: software pipeline for bisulfite-treated sequences.
Topics: Cytosine; DNA; DNA Methylation; Genomics; Sequence Alignment; Sequence Analysis, DNA; Software; Sulfites | 2011 |
Evidence for non-CpG methylation in mammals.
Topics: 3T3-L1 Cells; Animals; Cells, Cultured; CpG Islands; Cytosine; DNA Cleavage; DNA Methylation; Fibroblasts; Humans; Luminescent Measurements; Mice; Muscle, Skeletal; Polymerase Chain Reaction; Rats; Sequence Analysis, DNA; Sulfites | 2011 |
Genome-wide methylation analysis.
Topics: Chromatography, Thin Layer; CpG Islands; Cytosine; DNA Methylation; DNA Restriction Enzymes; Electrophoresis, Capillary; Epigenomics; Genetic Testing; Genome; Humans; Sulfites | 2012 |
Ultra-low-input, tagmentation-based whole-genome bisulfite sequencing.
Topics: Base Sequence; Cell Line, Transformed; CpG Islands; Cytosine; DNA; DNA Methylation; Gene Library; Genome, Human; Humans; Lymphocytes; Molecular Sequence Data; Polymerase Chain Reaction; Sequence Analysis, DNA; Sulfites; Transposases | 2012 |
Quantitative sequencing of 5-methylcytosine and 5-hydroxymethylcytosine at single-base resolution.
Topics: 5-Methylcytosine; Animals; CpG Islands; Cytosine; DNA; DNA Methylation; Embryonic Stem Cells; Epigenesis, Genetic; Genes, Intracisternal A-Particle; High-Throughput Nucleotide Sequencing; Long Interspersed Nucleotide Elements; Mice; Oxidation-Reduction; Rhenium; Sequence Analysis, DNA; Sulfites; Transcription, Genetic; Uracil | 2012 |
BRAT-BW: efficient and accurate mapping of bisulfite-treated reads.
Topics: Cytosine; DNA Methylation; Genome; High-Throughput Nucleotide Sequencing; Sequence Analysis, DNA; Software; Sulfites | 2012 |
Fast and sensitive mapping of bisulfite-treated sequencing data.
Topics: Algorithms; Cytosine; DNA; DNA Methylation; Genome; Humans; Sensitivity and Specificity; Sequence Analysis, DNA; Software; Sulfites | 2012 |
Single nucleotide analysis of cytosine methylation by whole-genome shotgun bisulfite sequencing.
Topics: Cytosine; DNA Methylation; Gene Library; Genetic Techniques; Genome; Humans; Polymerase Chain Reaction; Sequence Analysis, DNA; Software; Sulfites | 2012 |
Advanced methylome analysis after bisulfite deep sequencing: an example in Arabidopsis.
Topics: Arabidopsis; Base Sequence; Cytosine; DNA Methylation; Genome, Plant; High-Throughput Nucleotide Sequencing; Reference Standards; Reproducibility of Results; Sequence Alignment; Sequence Analysis, DNA; Sulfites | 2012 |
Sequencing the sixth base (5-hydroxymethylcytosine): selective DNA oxidation enables base-pair resolution.
Topics: 5-Methylcytosine; Base Pairing; Cytosine; Deamination; DNA; Oxidation-Reduction; Sequence Analysis, DNA; Sulfites | 2012 |
The anti-CMS technique for genome-wide mapping of 5-hydroxymethylcytosine.
Topics: 5-Methylcytosine; Antibodies; Base Sequence; Cytosine; DNA Primers; Genomics; Immunoprecipitation; Molecular Sequence Data; Sulfites | 2012 |
'Leveling' the playing field for analyses of single-base resolution DNA methylomes.
Topics: Cytosine; DNA Methylation; Genome; Sequence Analysis, DNA; Sulfites | 2012 |
Tet-assisted bisulfite sequencing of 5-hydroxymethylcytosine.
Topics: 5-Methylcytosine; Animals; Chromatography, High Pressure Liquid; Cytosine; DNA-Binding Proteins; Glucosyltransferases; Mice; Polymerase Chain Reaction; Proto-Oncogene Proteins; Sequence Analysis, DNA; Sulfites | 2012 |
Base damage within single-strand DNA underlies in vivo hypermutability induced by a ubiquitous environmental agent.
Topics: APOBEC-3G Deaminase; Cytidine Deaminase; Cytosine; DNA; DNA Damage; DNA Repair; DNA, Single-Stranded; Gene-Environment Interaction; Humans; Mutagenesis; Mutation Rate; Saccharomyces cerevisiae; Sulfites; Telomere | 2012 |
The conversion of protonated cytosine-SO3(-) to uracil-SO3(-): insights into the novel induced hydrolytic deamination through bisulfite catalysis.
Topics: Catalysis; Cytosine; Deamination; Hydrolysis; Models, Molecular; Protons; Sulfites; Sulfur Oxides; Uracil | 2013 |
Chemical modification-assisted bisulfite sequencing (CAB-Seq) for 5-carboxylcytosine detection in DNA.
Topics: Amides; Catalysis; Cytosine; DNA; Ethyldimethylaminopropyl Carbodiimide; Molecular Structure; Sulfites | 2013 |
Bisulfite pyrosequencing.
Topics: Cytosine; DNA Methylation; Genome, Human; Humans; Polymerase Chain Reaction; Sequence Analysis, DNA; Sulfites | 2013 |
Uracil in duplex DNA is a substrate for the nucleotide incision repair pathway in human cells.
Topics: Base Sequence; Biocatalysis; Cell Line; Cytosine; Deamination; DNA; DNA Repair; DNA-(Apurinic or Apyrimidinic Site) Lyase; Humans; Kinetics; Methanosarcina; Nucleotides; Signal Transduction; Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization; Substrate Specificity; Sulfites; Thymine DNA Glycosylase; Uracil | 2013 |
Intronic non-CG DNA hydroxymethylation and alternative mRNA splicing in honey bees.
Topics: 5-Methylcytosine; Africa; Alternative Splicing; Animals; Bees; Behavior, Animal; CpG Islands; Cytosine; DNA Methylation; Europe; Exons; Gene Expression Regulation; Genes, Insect; Honey; Introns; Reproducibility of Results; RNA Splice Sites; RNA, Messenger; Sequence Analysis, DNA; Sulfites | 2013 |
A novel combined bisulfite UDG assay for selective 5-methylcytosine detection.
Topics: 5-Methylcytosine; Cytosine; DNA; DNA Cleavage; DNA Methylation; Electrophoresis, Polyacrylamide Gel; Enzyme Assays; Humans; Oligodeoxyribonucleotides; Sensitivity and Specificity; Sequence Analysis, DNA; Sodium Hydroxide; Solutions; Sulfites; Uracil; Uracil-DNA Glycosidase | 2013 |
A new insight into the 5-carboxycytosine and 5-formylcytosine under typical bisulfite conditions: a deamination mechanism study.
Topics: Cytosine; Deamination; Gases; Hydrogen Bonding; Isomerism; Models, Molecular; Solvents; Sulfites; Thermodynamics; Water | 2014 |
Bisulfighter: accurate detection of methylated cytosines and differentially methylated regions.
Topics: Cytosine; DNA Methylation; Sequence Alignment; Sequence Analysis, DNA; Software; Sulfites | 2014 |
Quantitative sequencing of 5-formylcytosine in DNA at single-base resolution.
Topics: Animals; Cytosine; DNA; Embryonic Stem Cells; Mice; Sulfites | 2014 |
GPU-BSM: a GPU-based tool to map bisulfite-treated reads.
Topics: Animals; Cytosine; DNA Methylation; Humans; Sequence Analysis, DNA; Sulfites | 2014 |
Epigenetic germline mosaicism in infertile men.
Topics: Adult; Alleles; Cytosine; DNA Methylation; Epigenesis, Genetic; Epigenomics; Genomic Imprinting; Germ-Line Mutation; High-Throughput Nucleotide Sequencing; Humans; Infertility, Male; Male; Mosaicism; Potassium Channels, Voltage-Gated; Proteins; Spermatozoa; Sulfites | 2015 |
Single base resolution analysis of 5-methylcytosine and 5-hydroxymethylcytosine by RRBS and TAB-RRBS.
Topics: 5-Methylcytosine; Cytosine; Deoxyribonuclease HpaII; Glycosylation; Humans; Oxidation-Reduction; Sequence Analysis, DNA; Sulfites | 2015 |
MethylC-seq library preparation for base-resolution whole-genome bisulfite sequencing.
Topics: Cytosine; DNA Fragmentation; DNA Methylation; Genomic Library; Genomics; Sequence Analysis, DNA; Sulfites | 2015 |
Accurate measurement of 5-methylcytosine and 5-hydroxymethylcytosine in human cerebellum DNA by oxidative bisulfite on an array (OxBS-array).
Topics: 5-Methylcytosine; Adult; Cerebellum; Cytosine; DNA; DNA Methylation; Humans; Male; Oligonucleotide Array Sequence Analysis; Oxidation-Reduction; Reproducibility of Results; Sulfites | 2015 |
Enhanced reduced representation bisulfite sequencing for assessment of DNA methylation at base pair resolution.
Topics: Base Pairing; Base Sequence; CpG Islands; Cytosine; DNA Methylation; DNA Restriction Enzymes; Humans; Molecular Sequence Data; Sequence Analysis, DNA; Sulfites | 2015 |
Post-conversion targeted capture of modified cytosines in mammalian and plant genomes.
Topics: 5-Methylcytosine; Alleles; Animals; Cell Line; Cytosine; DNA Methylation; Genome, Plant; Genomics; High-Throughput Nucleotide Sequencing; Humans; Mice; Polymorphism, Single Nucleotide; Sequence Analysis, DNA; Sulfites | 2015 |
Whole genome bisulfite sequencing of cell-free DNA and its cellular contributors uncovers placenta hypomethylated domains.
Topics: CpG Islands; Cytosine; DNA; DNA Fragmentation; DNA Methylation; Epigenesis, Genetic; Female; Fetus; Gene Library; Genomics; Humans; Immunoprecipitation; Placenta; Pregnancy; Sequence Analysis, DNA; Sulfites | 2015 |
Estimation of the methylation pattern distribution from deep sequencing data.
Topics: Algorithms; Animals; Bees; Brain; Cytosine; DNA Methylation; Documentation; High-Throughput Nucleotide Sequencing; Models, Statistical; Programming Languages; Sulfites | 2015 |
Detection of Cytosine methylation in ancient DNA from five native american populations using bisulfite sequencing.
Topics: CpG Islands; Cytosine; DNA Methylation; Humans; Indians, North American; Retroelements; Sequence Analysis, DNA; Sulfites | 2015 |
Accurate CpG and non-CpG cytosine methylation analysis by high-throughput locus-specific pyrosequencing in plants.
Topics: Base Sequence; CpG Islands; Cytosine; DNA Methylation; DNA Primers; DNA, Chloroplast; DNA, Plant; Genes, Plant; High-Throughput Nucleotide Sequencing; Promoter Regions, Genetic; Sequence Analysis, DNA; Software; Solanum lycopersicum; Sulfites | 2015 |
Base-resolution detection of N4-methylcytosine in genomic DNA using 4mC-Tet-assisted-bisulfite- sequencing.
Topics: 5-Methylcytosine; Animals; Cytosine; DNA-Binding Proteins; DNA, Bacterial; Firmicutes; Genome, Bacterial; Mice; Nucleotide Motifs; Proto-Oncogene Proteins; Sequence Analysis, DNA; Sulfites | 2015 |
Bisulfite-free, base-resolution analysis of 5-formylcytosine at the genome scale.
Topics: 5-Methylcytosine; Animals; Cell Line; CpG Islands; Cytosine; DNA Methylation; DNA Primers; Epigenomics; Gene Expression Regulation; Genome; Mice; Mice, Transgenic; Oligonucleotides; Oxygen; Polymerase Chain Reaction; Sequence Analysis, DNA; Stem Cells; Sulfites | 2015 |
Selective oxidation of 5-hydroxymethylcytosine with micelle incarcerated oxidants to determine it at single base resolution.
Topics: 5-Methylcytosine; Base Sequence; Catalysis; Cytosine; Mass Spectrometry; Micelles; Oxidation-Reduction; Sulfites | 2015 |
An integrative approach for efficient analysis of whole genome bisulfite sequencing data.
Topics: Algorithms; Computational Biology; CpG Islands; Cytosine; DNA Methylation; Genome, Human; High-Throughput Nucleotide Sequencing; Humans; Sequence Analysis, DNA; Sulfites | 2015 |
Detection of differentially methylated regions from bisulfite-seq data by hidden Markov models incorporating genome-wide methylation level distributions.
Topics: Algorithms; Binomial Distribution; Computational Biology; Cytosine; DNA Methylation; Genome-Wide Association Study; Genome, Human; High-Throughput Nucleotide Sequencing; Humans; Markov Chains; Sequence Analysis, DNA; Sulfites | 2015 |
Variation in 5-hydroxymethylcytosine across human cortex and cerebellum.
Topics: 5-Methylcytosine; Cerebellar Cortex; Cerebellum; Cytosine; DNA; DNA Methylation; Epigenesis, Genetic; Genome, Human; Humans; Sequence Analysis, DNA; Sulfites | 2016 |
Methylation profiling by bisulfite sequencing analysis of the mtDNA Non-Coding Region in replicative and senescent Endothelial Cells.
Topics: 5-Methylcytosine; Cytosine; DNA, Intergenic; DNA, Mitochondrial; Endothelial Cells; Humans; Mitochondria; Sequence Analysis, DNA; Sulfites | 2016 |
[Improvement and Evaluation on Bisulfite Modification of DNA for DNA Methylation Detection].
Topics: Cytosine; DNA; DNA Methylation; Polymerase Chain Reaction; Sulfites; Thymine | 2016 |
Base-resolution profiling of active DNA demethylation using MAB-seq and caMAB-seq.
Topics: 5-Methylcytosine; Animals; Cell Line; Cytosine; DNA; DNA Methylation; DNA Modification Methylases; Mice; Sequence Analysis, DNA; Sulfites | 2016 |
Methylation-assisted bisulfite sequencing to simultaneously map 5fC and 5caC on a genome-wide scale for DNA demethylation analysis.
Topics: 5-Methylcytosine; Animals; Base Sequence; Cell Line; CpG Islands; Cytosine; DNA; DNA Methylation; Epigenesis, Genetic; Humans; Mice; Sequence Analysis, DNA; Sulfites | 2016 |
Simple and accurate single base resolution analysis of 5-hydroxymethylcytosine by catalytic oxidative bisulfite sequencing using micelle incarcerated oxidants.
Topics: 5-Methylcytosine; Adamantane; Animals; Cyclic N-Oxides; Cytosine; DNA, Single-Stranded; Embryonic Stem Cells; Iodobenzenes; Mice; Micelles; Onium Compounds; Oxidants; Oxidation-Reduction; Sequence Analysis, DNA; Sodium Dodecyl Sulfate; Sulfites; Temperature | 2016 |
Plant-RRBS, a bisulfite and next-generation sequencing-based methylome profiling method enriching for coverage of cytosine positions.
Topics: Cytosine; DNA Methylation; DNA Restriction Enzymes; Genetic Techniques; Genome, Plant; Oryza; Sulfites | 2017 |
Bisulfite Sequencing for DNA Methylation Analysis of Primary Muscle Stem Cells.
Topics: Cytosine; DNA; DNA Methylation; DNA, Single-Stranded; Genome-Wide Association Study; Genome, Human; Humans; Primary Cell Culture; RNA; Satellite Cells, Skeletal Muscle; Sequence Analysis, DNA; Sulfites; Transcriptome | 2017 |
Profiling DNA Methylation Using Bisulfite Sequencing (BS-Seq).
Topics: Arabidopsis; Cytosine; DNA Methylation; Epigenesis, Genetic; Genome, Plant; High-Throughput Nucleotide Sequencing; Sulfites; Whole Genome Sequencing | 2018 |
Genome-Wide Analysis of DNA Methylation in Single Cells Using a Post-bisulfite Adapter Tagging Approach.
Topics: Animals; Cytosine; DNA; DNA Methylation; Epigenomics; Gene Library; Genome-Wide Association Study; High-Throughput Nucleotide Sequencing; Humans; Mice; Sequence Analysis, DNA; Single-Cell Analysis; Sulfites; Whole Genome Sequencing | 2018 |
Whole-Genome Bisulfite Sequencing Using the Ovation® Ultralow Methyl-Seq Protocol.
Topics: Computational Biology; Cytosine; DNA Methylation; Epigenesis, Genetic; Genome, Human; High-Throughput Nucleotide Sequencing; Humans; Polymerase Chain Reaction; Sulfites; Whole Genome Sequencing | 2018 |
An optimized rapid bisulfite conversion method with high recovery of cell-free DNA.
Topics: Cell-Free Nucleic Acids; Cytosine; Deamination; DNA; DNA Methylation; Humans; Molecular Biology; Real-Time Polymerase Chain Reaction; Sequence Analysis, DNA; Sulfites | 2017 |
Technical adequacy of bisulfite sequencing and pyrosequencing for detection of mitochondrial DNA methylation: Sources and avoidance of false-positive detection.
Topics: Animals; CpG Islands; Cytosine; DNA Methylation; DNA, Mitochondrial; Humans; Mice; Sequence Analysis, DNA; Sulfites | 2018 |
Two are better than one: HPoxBS - hairpin oxidative bisulfite sequencing.
Topics: 5-Methylcytosine; Animals; Cytosine; DNA; DNA (Cytosine-5-)-Methyltransferase 1; DNA Methylation; DNA-Binding Proteins; Embryonic Stem Cells; Gene Expression Regulation; High-Throughput Nucleotide Sequencing; Mice; Oxidation-Reduction; Proto-Oncogene Proteins; Sulfites | 2018 |
Separation-free single-base extension assay with fluorescence resonance energy transfer for rapid and convenient determination of DNA methylation status at specific cytosine and guanine dinucleotide sites.
Topics: Cytosine; DNA; DNA Methylation; Fluorescence Resonance Energy Transfer; Guanine; HeLa Cells; Humans; Sulfites | 2019 |
Resolution of the DNA methylation state of single CpG dyads using in silico strand annealing and WGBS data.
Topics: Animals; Base Sequence; Computational Biology; Computer Simulation; CpG Islands; Cytosine; DNA; DNA Methylation; Embryo, Mammalian; Epigenesis, Genetic; Genome; High-Throughput Nucleotide Sequencing; Mice; Models, Genetic; Sequence Alignment; Sulfites; Whole Genome Sequencing | 2019 |
Library Preparation for Multiplexed Reduced Representation Bisulfite Sequencing with a Universal Adapter.
Topics: 5-Methylcytosine; Animals; CpG Islands; Cytosine; DNA Methylation; DNA Primers; Gene Library; Rats; Sequence Analysis, DNA; Sulfites | 2019 |
Method for Bisulfite Sequencing Data Analysis for Whole-Genome Level DNA Methylation Detection in Legumes.
Topics: Cytosine; DNA Methylation; DNA, Plant; Epigenesis, Genetic; Fabaceae; High-Throughput Nucleotide Sequencing; Molecular Sequence Annotation; Sulfites; Whole Genome Sequencing | 2020 |
BCREval: a computational method to estimate the bisulfite conversion ratio in WGBS.
Topics: Algorithms; Computational Biology; Cytosine; DNA; DNA Methylation; Genome; High-Throughput Nucleotide Sequencing; Humans; Sulfites; Whole Genome Sequencing | 2020 |
Plant-RRBS: DNA Methylome Profiling Adjusted to Plant Genomes, Utilizing Efficient Endonuclease Combinations, for Multi-Sample Studies.
Topics: Breeding; Cytosine; DNA Fingerprinting; DNA Methylation; DNA, Plant; Endonucleases; Epigenome; Genome, Plant; Genomics; High-Throughput Nucleotide Sequencing; Oryza; Plants; Sulfites; Whole Genome Sequencing | 2020 |
Epigenetic Approaches in Non-Model Plants.
Topics: Cytosine; DNA Methylation; DNA, Plant; Epigenesis, Genetic; Epigenomics; Genetic Variation; Genome, Plant; Genomics; High-Throughput Nucleotide Sequencing; Plants; Sulfites | 2020 |
Enhanced Performance of DNA Methylation Markers by Simultaneous Measurement of Sense and Antisense DNA Strands after Cytosine Conversion.
Topics: Aged; Biomarkers, Tumor; Circulating Tumor DNA; Colorectal Neoplasms; Cytosine; DNA Methylation; DNA, Antisense; Female; Humans; KCNQ Potassium Channels; Male; Membrane Proteins; Polymerase Chain Reaction; Sulfites | 2020 |
A New Approach to Identify the Methylation Sites in the Control Region of Mitochondrial DNA.
Topics: CpG Islands; Cytosine; DNA Methylation; DNA, Mitochondrial; Humans; Polymerase Chain Reaction; Sequence Analysis, DNA; Sulfites | 2021 |
LuxUS: DNA methylation analysis using generalized linear mixed model with spatial correlation.
Topics: Cytosine; DNA; DNA Methylation; Epigenesis, Genetic; Sequence Analysis, DNA; Sulfites | 2020 |
Inhalation exposure to cigarette smoke and inflammatory agents induces epigenetic changes in the lung.
Topics: Animals; Carcinogens; Cell Proliferation; Chromatography, High Pressure Liquid; CpG Islands; Cytosine; DNA; DNA Methylation; Epigenesis, Genetic; Female; High-Throughput Nucleotide Sequencing; Histones; Inflammation; Inhalation Exposure; Lung; Lung Neoplasms; Mice; Mice, Inbred Strains; Nicotiana; Nitrosamines; Smoke; Smoking; Sulfites; Tobacco Products | 2020 |
Hairpin-Bisulfite PCR.
Topics: Cytosine; DNA; DNA Methylation; DNA, Complementary; Humans; Inverted Repeat Sequences; Nucleic Acid Conformation; Oligonucleotides; Polymerase Chain Reaction; Sequence Analysis, DNA; Sulfites | 2021 |
High-Resolution Analysis of 5-Hydroxymethylcytosine by TET-Assisted Bisulfite Sequencing.
Topics: 5-Methylcytosine; Animals; Cytosine; Dioxygenases; DNA; DNA Methylation; Epigenesis, Genetic; Epigenomics; Genome; Humans; Oxidation-Reduction; Sequence Analysis, DNA; Sulfites | 2021 |
Oxidative Bisulfite Sequencing: An Experimental and Computational Protocol.
Topics: 5-Methylcytosine; Animals; Computational Biology; Cytosine; Dioxygenases; DNA; DNA Methylation; High-Throughput Nucleotide Sequencing; Humans; Oxidation-Reduction; Oxidative Stress; Sequence Analysis, DNA; Sulfites | 2021 |
Bisulfite-Free Sequencing of 5-Hydroxymethylcytosine with APOBEC-Coupled Epigenetic Sequencing (ACE-Seq).
Topics: 5-Methylcytosine; Animals; Computational Biology; Cytidine Deaminase; Cytosine; DNA; DNA Methylation; Epigenomics; Humans; Proteins; Sequence Analysis, DNA; Single Molecule Imaging; Sulfites | 2021 |
Bioinformatics Analysis of DNA Methylation Through Bisulfite Sequencing Data.
Topics: Animals; Computational Biology; Cytosine; DNA; DNA Methylation; Epigenesis, Genetic; Epigenomics; Genome; Genomics; High-Throughput Nucleotide Sequencing; Humans; Polymerase Chain Reaction; Sequence Analysis, DNA; Sulfites | 2021 |
A Bisulfite-free Approach for Base-Resolution Analysis of Genomic 5-Carboxylcytosine.
Topics: Animals; Binding Sites; Cell Line; Cytosine; Genome; Humans; Mice; Mice, Knockout; Mouse Embryonic Stem Cells; Pluripotent Stem Cells; Reproducibility of Results; Sulfites; Transcription Factors; Transcription, Genetic | 2020 |
Bisulfite treatment and single-molecule real-time sequencing reveal D-loop length, position, and distribution.
Topics: Cytosine; DNA Repair; DNA, Single-Stranded; Nucleic Acid Amplification Techniques; Single Molecule Imaging; Sulfites; Uracil | 2020 |
The cytosine methylation landscape of spring barley revealed by a new reduced representation bisulfite sequencing pipeline, WellMeth.
Topics: Cytosine; DNA Methylation; Hordeum; Sulfites | 2020 |
Detection of 5-formylcytosine in Mitochondrial Transcriptome.
Topics: Cytosine; DNA, Mitochondrial; Gene Expression Profiling; Mitochondria; Nucleotides; RNA Processing, Post-Transcriptional; RNA-Seq; RNA, Mitochondrial; Sulfites; Transcriptome | 2021 |
Flanking sequence preference modulates de novo DNA methylation in the mouse genome.
Topics: Amino Acid Substitution; Animals; Arginine; Base Sequence; CpG Islands; Crystallography, X-Ray; Cytosine; Datasets as Topic; DNA (Cytosine-5-)-Methyltransferases; DNA Methylation; DNA Methyltransferase 3A; DNA Methyltransferase 3B; Embryonic Stem Cells; Gene Knockout Techniques; Guanine; Humans; Lysine; Mice; Molecular Dynamics Simulation; Substrate Specificity; Sulfites; Whole Genome Sequencing | 2021 |
Analysis of Plant DNA Methylation Profiles Using R.
Topics: Algorithms; Chromosome Mapping; Chromosomes, Plant; Computational Biology; Cytosine; DNA Methylation; Epigenesis, Genetic; Gene Expression Regulation, Plant; Genome, Plant; Genomics; Plants; Software; Sulfites; Whole Genome Sequencing | 2021 |
Reduced Bisulfite Sequencing: Quantitative Base-Resolution Sequencing of 5-Formylcytosine.
Topics: Animals; Cytosine; DNA; DNA Methylation; Epigenomics; Humans; Sequence Analysis, DNA; Sulfites | 2021 |
Distinguishing Active Versus Passive DNA Demethylation Using Illumina MethylationEPIC BeadChip Microarrays.
Topics: 5-Methylcytosine; Computational Biology; Cytosine; DNA; DNA Demethylation; DNA Methylation; Epigenesis, Genetic; High-Throughput Nucleotide Sequencing; Humans; Microarray Analysis; Oxidation-Reduction; Sulfites | 2021 |
Genome-wide detection of cytosine methylations in plant from Nanopore data using deep learning.
Topics: Arabidopsis; CpG Islands; Cytosine; Deep Learning; DNA Methylation; DNA, Plant; Epigenesis, Genetic; Genome, Plant; High-Throughput Nucleotide Sequencing; Nanopores; Oryza; Sequence Analysis, DNA; Sulfites | 2021 |
Analysis of Bisulfite Sequencing Data Using Bismark and DMRcaller to Identify Differentially Methylated Regions.
Topics: Cytosine; DNA Methylation; Epigenesis, Genetic; Sulfites | 2022 |
Chemoenzymatic labeling of DNA methylation patterns for single-molecule epigenetic mapping.
Topics: Arabidopsis; CpG Islands; Cytosine; DNA; DNA Methylation; Epigenesis, Genetic; Epigenomics; Humans; Sequence Analysis, DNA; Sulfites | 2022 |
Effects of salinity stress on methylation of the liver genome and complement gene in large yellow croaker (Larimichthys crocea).
Topics: Animals; Complement C7; Complement System Proteins; Cytosine; DNA Methylation; Fish Proteins; Liver; Perciformes; RNA, Messenger; Salt Stress; Sulfites | 2022 |
Epigenetic machinery is functionally conserved in cephalopods.
Topics: Animals; Cephalopoda; Cytosine; DNA Transposable Elements; Epigenesis, Genetic; Sulfites | 2022 |
msPIPE: a pipeline for the analysis and visualization of whole-genome bisulfite sequencing data.
Topics: Cytosine; Sequence Analysis, DNA; Sulfites; Whole Genome Sequencing | 2022 |
DNA Methylation Analysis Using Bisulfite Pyrosequencing.
Topics: Animals; CpG Islands; Cytosine; DNA Methylation; DNA Primers; High-Throughput Nucleotide Sequencing; Mammals; Polymorphism, Single Nucleotide; Sequence Analysis, DNA; Sulfites; Thymine | 2023 |
Bisulfite-Free and Single-Base Resolution Detection of Epigenetic DNA Modification of 5-Methylcytosine by Methyltransferase-Directed Labeling with APOBEC3A Deamination Sequencing.
Topics: 5-Methylcytosine; Animals; Cytosine; Deamination; DNA; DNA Methylation; Epigenesis, Genetic; Humans; Mammals; Methyltransferases; Sequence Analysis, DNA; Sulfites | 2022 |
Engineered APOBEC3C Sequencing Enables Bisulfite-Free and Direct Detection of DNA Methylation at a Single-Base Resolution.
Topics: 5-Methylcytosine; Cytidine Deaminase; Cytosine; DNA; DNA Methylation; Epigenesis, Genetic; Humans; Sequence Analysis, DNA; Sulfites | 2023 |
Methylome Imputation by Methylation Patterns.
Topics: Cytosine; DNA Methylation; Epigenesis, Genetic; Epigenome; Genomics; Sequence Analysis, DNA; Sulfites | 2023 |
Single-cell bisulfite-free 5mC and 5hmC sequencing with high sensitivity and scalability.
Topics: 5-Methylcytosine; Animals; Cytosine; DNA Methylation; Mice; Sequence Analysis, DNA; Sulfites | 2023 |