silicon and mica

Lipid membranes regulate the flow of nutrients and communication signaling between cells and protect the sub-cellular structures. Recent attempts to fabricate artificial systems using nanostructures that mimic the physiological properties of natural lipid bilayer membranes (LBM) fused with transmembrane proteins have helped demonstrate the importance of temperature, pH, ionic strength, adsorption behavior, conformational reorientation and surface density in cellular membranes which all affect the incorporation of proteins on solid surfaces. Much of this work is performed on artificial templates made of polymer sponges or porous materials based on alumina, mica, and porous silicon (PSi) surfaces. For example, porous silicon materials have high biocompatibility, biodegradability, and photoluminescence, which allow them to be used both as a support structure for lipid bilayers or a template to measure the electrochemical functionality of living cells grown over the surface as in vivo. The variety of these media, coupled with the complex physiological conditions present in living systems, warrant a summary and prospectus detailing which artificial systems provide the most promise for different biological conditions. This study summarizes the use of electrochemical impedance spectroscopy (EIS) data on artificial biological membranes that are closely matched with previously published biological systems using both black lipid membrane and patch clamp techniques.

Topics: Aluminum Oxide; Aluminum Silicates; Cell Engineering; Cell Membrane; Dielectric Spectroscopy; Lipid Bilayers; Nanostructures; Patch-Clamp Techniques; Proteins; Silicon

Supported lipid bilayers are model membranes formed at solid substrate surfaces. This architecture renders the membrane experimentally accessible to surface-sensitive techniques used to study their properties, including atomic force microscopy, optical fluorescence microscopy, quartz crystal microbalance, and X-ray/neutron reflectometry, and allows integration with technology for potential biotechnological applications such as drug screening devices. The experimental technique often dictates substrate choice or treatment, and it is anecdotally recognized that certain substrates are suitable for a particular experiment, but the exact influence of the substrate has not been comprehensively investigated. Here, we study the behavior of a simple model bilayer, phase-separating on a variety of commonly used substrates, including glass, mica, silicon, and quartz, with drastically different results. The distinct micron-scale domains observed on mica, identical to those seen in free-floating giant unilamellar vesicles, are reduced to nanometer-scale domains on glass and quartz. The mechanism for the arrest of domain formation is investigated, and the most likely candidate is nanoscale surface roughness, acting as a drag on the hydrodynamic motion of small domains during phase separation. Evidence was found that the physicochemical properties of the surface have a mediating effect, most likely because of the changes in the lubricating interstitial water layer between the surface and bilayer.

Topics: 1,2-Dipalmitoylphosphatidylcholine; Aluminum Silicates; Diffusion; Glass; Lipid Bilayers; Membrane Microdomains; Phosphatidylcholines; Phosphatidylethanolamines; Quartz; Silicon; Surface Properties

The designed nature and controlled, one-pot synthesis of DNA origami provides exciting opportunities in many fields, particularly nanoelectronics. Many of these applications require interaction with and adhesion of DNA nanostructures to a substrate. Due to its atomically flat and easily cleaned nature, mica has been the substrate of choice for DNA origami experiments. However, the practical applications of mica are relatively limited compared to those of semiconductor substrates. For this reason, a straightforward, stable, and repeatable process for DNA origami adhesion on derivatized silicon oxide is presented here. To promote the adhesion of DNA nanostructures to silicon oxide surface, a self-assembled monolayer of 3-aminopropyltriethoxysilane (APTES) is deposited from an aqueous solution that is compatible with many photoresists. The substrate must be cleaned of all organic and metal contaminants using Radio Corporation of America (RCA) cleaning processes and the native oxide layer must be etched to ensure a flat, functionalizable surface. Cleanrooms are equipped with facilities for silicon cleaning, however many components of DNA origami buffers and solutions are often not allowed in them due to contamination concerns. This manuscript describes the set-up and protocol for in-lab, small-scale silicon cleaning for researchers who do not have access to a cleanroom or would like to incorporate processes that could cause contamination of a cleanroom CMOS clean bench. Additionally, variables for regulating coverage are discussed and how to recognize and avoid common sample preparation problems is described.

Topics: Aluminum Silicates; Ammonium Hydroxide; DNA; Hydrogen Peroxide; Nanostructures; Nucleic Acid Conformation; Silicon; Silicon Dioxide

A reliable method of deposition of aligned individual dsDNA molecules on mica, silicon, and micro/nanofabricated circuits is presented. Complexes of biotinylated double stranded poly(dG)-poly(dC) DNA with avidin were prepared and deposited on mica and silicon surfaces in the absence of Mg(2+) ions. Due to its positive charge, the avidin attached to one end of the DNA anchors the complex to negatively charged substrates. Subsequent drying with a directional gas flow yields DNA molecules perfectly aligned on the surface. In the avidin-DNA complex only the avidin moiety is strongly and irreversibly bound to the surface, while the DNA counterpart interacts with the substrates much more weakly and can be lifted from the surface and realigned in any direction. Using this technique, avidin-DNA complexes were deposited across platinum electrodes on a silicon substrate. Electrical measurements on the deposited DNA molecules revealed linear IV-characteristics and exponential dependence on relative humidity.

Topics: Aluminum Silicates; Avidin; DNA; Electromagnetic Phenomena; Humidity; Microelectrodes; Microscopy, Atomic Force; Nanotechnology; Poly C; Poly G; Silicon; Surface Properties

Self-assembled nano-arrays have a potential application as solid-phase diagnostics in many biomedical devices. The easiness of its production is directly connected to manufacture cost reduction. In this work, we present self-assembled structures starting from spin coated thin films of carboxylated polystyrene (PSC) and xyloglucan (XG) mixtures on both mica and silicon substrates. AFM images showed PSC nanospheres on top of a homogeneous layer of XG, for both substrates. The average nanosphere diameter fluctuated for a constant speed and it was likely to be independent of the component proportions on the mixture within a range of 30-50% (v/v) PSC. It was also observed that the largest diameters were found at the center of the sample and the smallest at the border. The detected nanospheres were also more numerous at the border. This behavior presents a similarity to spin coated colloidal dispersions. We observed that the average nanosphere diameter on mica substrates was bigger than the nanosphere diameters obtained on top of silicon substrates, under the same conditions. This result seems to be possibly connected to different mixture-surface interactions.

Topics: Adsorption; Aluminum Silicates; Biomimetic Materials; Chloroform; Fabaceae; Glucans; Microscopy, Atomic Force; Nanospheres; Nanotechnology; Particle Size; Polystyrenes; Seeds; Silicon; Surface Properties; Xylans

Using electron scanning microscopy, we have studied the protein deposit left on silicon and mica substrates by dried droplets of aqueous solutions of bovine beta-lactoglobulin at low concentration and pH = 2-7. We have observed different self-assembled structures: homogeneous layers, hexagonal platelets and flower-shaped patterns laying flat on the surface, and rods formed by columns. Homogeneous layers covered the largest area of the droplet deposit. The other structures were found in small isolated regions, where the protein solution dried in the form of microdroplets. The presence of hexagonal platelets, flower-shaped patterns and columnar rods shows that beta-lactoglobulin self-assembles at the surface in a hexagonal columnar phase, which has never been observed in solution. A comparison with proteins showing similar aggregates suggests that beta-lactoglobulin structures grow from hexagonal germs composed of discotic nanometric building blocks, possibly possessing an octameric structure. We propose that discotic building blocks of beta-lactoglobulin may be produced by the anisotropic interaction with the solid surface.

Topics: Aluminum Silicates; Animals; Cattle; Hydrogen-Ion Concentration; Lactoglobulins; Microscopy, Electron, Scanning; Protein Binding; Protein Conformation; Silicon

Purple membrane (PM) from Halobacterium salinarum, which comprises bacteriorhodopsin (BR) and lipids only, has been employed by many groups as a model system to study the structure and dynamics of membrane proteins. Although the conformational dynamics of BR within PM has been extensively analyzed with subnanometer resolution by means of diffraction experiments and spectroscopic methods, as well, structural studies of dynamical transitions within single PMs are rare. In this work, we show that tapping-mode atomic force microscopy (TM-AFM) is ideally suited to study dynamical transitions within solid-supported PMs at the nanoscale. Time-dependent AFM analysis of solid-supported PMs shows that redistribution processes take place between a crystalline core region, featuring a height of approximately 5 nm, and a highly mobile rim region (approximately 4 nm in height). Furthermore, we discuss the influence of temperature and substrate on the equilibrium. The experiments are complemented by electrostatic force microscopy (EFM) of PM on mica. Beyond their importance for many physiological processes, dynamical transitions in biological membranes, as observed in this work, are of critical importance for all methods that make use of solid-supported membrane assemblies, either analytical tools or applications.

Topics: Aluminum Silicates; Bacteriorhodopsins; Gold; Halobacterium salinarum; Microscopy, Atomic Force; Protein Multimerization; Protein Structure, Quaternary; Purple Membrane; Silicon; Static Electricity

The Oriented architecture of macromolecules plays a critical role in many aspects of Nanobiotechnology such as in the development of biosensors. To this regard, S-layers which constitute the outermost cell envelope component of many prokaryotic organisms, represent unique self assembled systems with the capability to rearrange into monomolecular and oriented arrays. These properties can be exploited to promote their crystallization on surfaces (e.g. silicone) which is pivotal for the subsequent immobilization of macromolecules and development of new biosensors. In this work the crystallization of bacterial S-layers obtained from Bacillus thuringiensis and Bacillus sphaericus CCM2177 on silicone, mica and quartz crystal surfaces were investigated. The SDS page results of S-layers isolated from the above mentioned bacteria put in evidence that their molecular weight (MW) was around 120 KDa and, as reported in the literature, slightly higher for those extracted by Bacillus thuringiensis. In addition, results showed that S-layers isolated from Bacillus thuringiensis form large crystalline domains on mica after 5 min whereas those extracted from Bacillus sphaericus CCM 2177 form a compact monolayer on silicone after 2 h. Results in this work put in evidence the possibility to use these substrates for the fabrication of sensitive biosensors.

Topics: Adsorption; Aluminum Silicates; Bacillus; Binding Sites; Crystallization; Materials Testing; Membrane Glycoproteins; Protein Binding; Quartz; Silicon

Adsorption isotherms of water on muscovite mica are obtained using grand canonical Monte Carlo simulations over a wide range of relative vapor pressures, p/p(0) at 298 K. Three distinct stages are observed in the adsorption isotherm. A sharp rise in the water coverage occurs for 0 < p/p(0) < 0.1. This is followed by a relatively slow increase in the coverage for 0.1 < or = p/p(0) < or = 0.7. Above p/p(0) = 0.7, a second increase in the coverage occurs due to the adsorption of water with bulklike features. The derived film thickness and isotherm shape for the simple point charge (SPC) water model is in excellent agreement with recent experiments of Balmer et al. [ Langmuir 2008 , 24 , 1566 ]. A novel observation is the significant redistribution of water between adsorbed layers as the water film develops. This redistribution is most pronounced for 0.1 < or = p/p(0) < or = 0.7, where water is depleted from the inner layers and film growth is initiated on the outer layer. During this stage, potassium hydration is found to play a dominant role in the rearrangement of water near the mica surface. The analysis of structural features reveals a strongly bound first layer of water molecules occupying the ditrigonal cavities between the potassium ions. In-plane structure of oxygen in the second layer, which forms part of the first hydration shell of potassium, reveals a liquidlike structure with the oxygen-oxygen pair correlation function displaying features similar to bulk water. Isosteric heats of adsorption were found to be in good agreement with the differential microcalorimetric data of Rakhmatkariev ( Clays Clay Miner. 2006 , 54 , 402 ), over the entire range of pressures investigated. Both SPC and extended simple point charge (SPC/E) water models were found to yield qualitatively similar adsorption and structural characteristics, with the SPC/E model predicting lower coverages than the SPC model for p/p(0) > 0.7.

Topics: Adsorption; Aluminum; Aluminum Silicates; Models, Molecular; Molecular Conformation; Monte Carlo Method; Oxygen; Particle Size; Potassium; Silicon; Water

Thin polysaccharide films prepared with xyloglucan (XG), a neutral polysaccharide extracted from the seeds of Guibourtia hymenifolia were prepared by spin-coating and drop deposition under pH3, pH5 and pH12, on silicon and mica substrates. Atomic force microscopy (AFM) images show flat nanoporous matrices with additional grain-like structures on both mica and silicon for pH 3 and pH 5. However, X-ray photoelectron spectroscopy (XPS) and Auger spectra of these adsorbed biopolymers prepared under alkaline condition (pH 12) reveal that Na(+) ions from the solution interact with the mica substrate surface and with XG forming chemical bonds. Both XPS and Auger results suggest XG depolymerisation during adsorption, caused by an alkaline ss-base catalyzed degradation mechanism, which is consistent with the more basic character of the mica surface under these conditions. Thus, the polysaccharide diffusion is inhibited during dewetting due to the surface bonding. On the other hand, the interaction of Na(+) in solution with the silicon surface is weaker, favoring its interaction with the polysaccharide, conserving the overall polymer structure of XG and allowing the biopolymer to slip and diffuse during dewetting, forming the final branched fractal structure.

Topics: Adsorption; Aluminum Silicates; Biocompatible Materials; Catalysis; Diffusion; Fractals; Glucans; Hydrogen-Ion Concentration; Microscopy, Atomic Force; Polymers; Polysaccharides; Silicon; Substrate Specificity; Surface Properties; X-Rays; Xylans

In this study, we compare for the first time the nanomechanical properties of lipid bilayer islands on flat and porous surfaces. 1,2-dimyristoyl-sn-glycero-3-phosphatidylcholine (DMPC) and 1,2-dipalmitoyl-sn-glycero-3-phosphatidylcholine (DPPC) bilayers were deposited on flat (silicon and mica) and porous silicon (pSi) substrate surfaces and examined using atomic force spectroscopy and force volume imaging. Force spectroscopy measurements revealed the effects of the underlying substrate and of the lipid phase on the nanomechanical properties of bilayers islands. For mica and silicon, significant differences in breakthrough force between the center and the edges of bilayer islands were observed for both phospolipids. These differences were more pronounced for DMPC than for DPPC, presumably due to melting effects at the edges of DMPC bilayers. In contrast, bilayer islands deposited on pSi yielded similar breakthrough forces in the central region and along the perimeter of the islands, and those values in turn were similar to those measured along the perimeter of bilayer islands deposited on the flat substrates. The study also demonstrates that pSi is suitable solid support for the formation of pore-spanning phospholipid bilayers with potential applications in transmembrane protein studies, drug delivery, and biosensing.

Topics: Aluminum Silicates; Biomechanical Phenomena; Biomimetics; Cell Membrane; Lipid Bilayers; Microscopy, Atomic Force; Nanotechnology; Phospholipids; Porosity; Silicon

We have recorded nanoscale topography and infrared chemical fingerprints of attomole layered lipids consisting of dimyristoylpho-sphatidylcholine on silicon and mica. Lipids deposited on mica built stacks consisting of up to 25 bilayers, each approximately 5 nm thick, spanning a range from 5-125 nm in height. Contrast evaluation as a function of layer thickness provides the near-field depth resolution.

Topics: Aluminum Silicates; Cell Membrane; Dimyristoylphosphatidylcholine; Equipment Design; Lipid Bilayers; Microscopy; Microscopy, Atomic Force; Nanoparticles; Nanostructures; Nanotechnology; Optics and Photonics; Silicon; Spectroscopy, Near-Infrared

Irreversible adsorption (deposition) of spherical particles on surface features of various shapes (collectors) was studied using the random sequential adsorption (RSA) model. The collectors in the form of linear line segments, semicircles, and circles were considered. Numerical simulation of the Monte Carlo type enabled one to determine particle configurations, the jamming coverage, and the end to end length of particle monolayers for various collector length (L) to particle size (d) ratio L = L/d. It was revealed that the jamming coverage for linear collectors Theta'(infinity) increases for L > 2 according to a linear dependence with respect to 1/L. For 2 > L > 1, a parabolic dependence of Theta'(infinity) on 1/L was predicted, characterized by the maximum value of Theta'(infinity) = 1.125 for L = 4/3. These dependencies allowed one to formulate an equation determining the length of nanostructures on surfaces if the averaged number of adsorbed particles is known. It was also predicted that the end to end length of the monolayer on a linear collector /L increased linearly with 1/L for L > 2. For 2 > L > 1 the dependence of /L on L was approximated by a polynomial expression, exhibiting a maximum of /L = 1.17 for L = 1.45. In the case of circular collectors, the jamming coverage was found to be substantially smaller for the same value of 1/L. It was demonstrated that the theoretical results are in agreement with our preliminary experimental data obtained for latex particles adsorbing on polyelectrolyte modified mica and on patterned surfaces obtained by a polymer-on-polymer stamping technique of gold covered silicon (Zheng et al. Langmuir 2002, 18, 4505).

Topics: Adsorption; Aluminum Silicates; Gold; Microspheres; Models, Theoretical; Monte Carlo Method; Silicon

The surface free energy of 1,2-dipalmitoyl-sn-glycero-3-phosphocholine (DPPC) layers deposited on glass, silicon, or mica by the spin-coating method was estimated. For this purpose, the advancing and receding contact angles of water, formamide, and diiodomethane were measured, and then two concepts of the interfacial interactions were applied. In the contact angle hysteresis approach, the apparent total surface free energy is calculated from the advancing and receding contact angles of the probe liquids, and in the Lifshitz-van der Waals/acid-base approach, the total surface free energy is calculated from previously determined components of the energy, that is, the apolar Lifshitz-van der Waals and the polar electron-donor and electron-acceptor, which are calculated from the advancing contact angles of the probe liquids alone. Comparison of the results obtained using these two approaches provided more information about changes in the hydrophobic/hydrophilic character of the DPPC layers and, simultaneously, a verification of the approaches. Moreover, the roughness and topography of the investigated layers were also examined by atomic force microscopy measurements. The hydrophilic character of the DPPC layers decreased if up to 0.5 mg of DPPC/mL was used to deposit on the substrates by the spin-coating method. Then it increased and leveled off if up to 2-2.5 mg of DPPC/mL was used. The changes in the energy were correlated with the changes in topography of the surfaces.

Topics: Aluminum Silicates; Glass; Microscopy, Atomic Force; Phosphatidylcholines; Silicon

The effect of monovalent salt nature and concentration over a range of low ionic strengths (0-10 mM LiCl, NaCl, KCl, or CsCl) and at two different pH values (6.3 and 10.0) on adsorption of dioctadecyldimethylammonium bromide (DODAB) bilayer fragments (BF) onto flat SiO(2) surfaces was systematically evaluated by means of in situ ellipsometry. High-affinity adsorption isotherms fitted by the Langmuir model indicated that adsorption maxima were consistent with bilayer deposition only around 10 mM monovalent salt at both pH values. In pure water, the mean thickness of the DODAB adsorbed layer was close to zero with bilayer deposition taking place only around 10 mM ionic strength. In the presence of 10 mM CsCl or LiCl, the highest and the lowest affinity constants for DODAB adsorption onto SiO(2) were, respectively, obtained consistently with the expected facility of cation exchange at the surface required for DODAB adsorption. The cation more tightly bound to the solid surface should be Li(+), which would present the largest resistance to displacement by the DODAB cation, whereas the less tightly bound cation should be Cs(+) due to its largest ionic radius and lowest charge density. In other words, DODAB adsorption proceeds in accordance with charge density on the solid surface, which depends on the nature and concentration of bound counterions as well as DODAB cation ability to displace them. AFM images show a very smooth DODAB film adsorbed onto the surface in situ with a large frequency of BF auto-association from their edges. The present results for flat surfaces entirely agree with previous data from our group for DODAB adsorption onto silica particles.

Topics: Adsorption; Aluminum Silicates; Cations; Lipid Bilayers; Microscopy, Atomic Force; Quaternary Ammonium Compounds; Silicon; Thermodynamics

The morphologies of dry MrgA protein monolayers on different solid substrates prepared by a three-step procedure (adsorption from an incubation solution, rinsing to remove excess salt and protein, and drying) were investigated using atomic force microscopy. MrgA is a dodecameric iron-storage protein which can form hexagonal, two-dimensional (2D) crystalline monolayers on hydrophilic surfaces at low supersaturation. The formation of such two-dimensional crystals is heavily dependent on the pH and the salinity of the incubation solution as well as on the surface properties. Correlation of surface coverage with substrate charge, ionic strength, and pH indicates the dominance of electrostatic effects in adsorption, with the balance shifting between intermolecular repulsion and protein-substrate attraction. Close to the isoelectric point (pI) of MrgA, adsorption to the surface and the formation of 2D crystals are favored. By preparation of self-assembled monolayers of thiols with different end groups on template-stripped gold, the surface properties can be varied easily from high to very low protein affinity. The resulting patterns of the crystalline protein structures are novel and could be a starting point for further scientific study, e.g., solid-supported cocrystallization with DNA, and indeed developments with technological applications, such as mesostructured deposition of MrgA-caged nanoparticles.

Topics: Adsorption; Aluminum Silicates; Bacterial Proteins; Crystallization; DNA-Binding Proteins; Gold; Hydrogen-Ion Concentration; Ions; Microscopy, Atomic Force; Models, Molecular; Models, Theoretical; Silicon; Substrate Specificity; Surface Properties

Surfaces formed by extracellular polymeric substances enclosing individual and some small communities of Acidithiobacillus ferrooxidans on plates of hydrophobic silicon and hydrophilic mica are analyzed by means of atomic force microscopy imaging. Accurate nanoscale descriptions of such coverage surfaces are obtained. The good agreement with the predictions of a rather simple but realistic theoretical model allows us to conclude that they correspond, indeed, to minimal area (constant mean curvature) surfaces enclosing a given volume associated with the encased bacteria. This is, to the best of our knowledge, the first shape characterization of the coverage formed by these biomolecules, with potential applications to the study of biofilms.

Topics: Aluminum Silicates; Bacillus; Bacterial Adhesion; Hydrophobic and Hydrophilic Interactions; Models, Biological; Silicon

Supported lipid bilayers (SLBs) are popular models of cell membranes with potential biotechnological applications and an understanding of the mechanisms of SLB formation is now emerging. Here we characterize, by combining atomic force microscopy, quartz crystal microbalance with dissipation monitoring, and ellipsometry, the formation of SLBs on mica from sonicated unilamellar vesicles using mixtures of zwitterionic, negatively and positively charged lipids. The results are compared with those we reported previously on silica. As on silica, electrostatic interactions were found to determine the pathway of lipid deposition. However, fundamental differences in the stability of surface-bound vesicles and the mobility of SLB patches were observed, and point out the determining role of the solid support in the SLB-formation process. The presence of calcium was found to have a much more pronounced influence on the lipid deposition process on mica than on silica. Our results indicate a specific calcium-mediated interaction between dioleoylphosphatidylserine molecules and mica. In addition, we show that the use of PLL-g-PEG modified tips considerably improves the AFM imaging of surface-bound vesicles and bilayer patches and evaluate the effects of the AFM tip on the apparent size and shape of these soft structures.

Topics: Aluminum Silicates; Biophysics; Biotechnology; Calcium; Cell Membrane; Edetic Acid; Fatty Acids, Monounsaturated; Lipid Bilayers; Lipids; Microscopy, Atomic Force; Phosphatidylcholines; Phosphatidylserines; Polyethylene Glycols; Quaternary Ammonium Compounds; Silicon; Silicon Dioxide; Time Factors

Self-assembled monolayers (SAMs) of 1-alkenes on hydrogen-passivated silicon substrates were successfully patterned on the nanometer scale using an atomic force microscope (AFM) probe tip. Nanoshaving experiments on alkyl monolayers formed on H-Si(111) not only demonstrate the flexibility of this technique but also show that patterning with an AFM probe is a viable method for creating well-defined, nanoscale features in a monolayer matrix in a reproducible and controlled manner. Features of varying depths (2-15 nm) were created in the alkyl monolayers by controlling the applied load and the number of etching scans made at high applied loads. The patterning on these SAM films is compared with the patterning of alkyl siloxane monolayers on silicon and mica.

Topics: Alkenes; Aluminum Silicates; Hydrogen; Membranes, Artificial; Microscopy, Atomic Force; Nanotechnology; Silicon; Surface Properties

Wettability plays a key role in determining fluid distributions and consequently the multiphase flow and transport in petroleum reservoirs. Many crude oils have polar organic components that collect at oil-water interfaces and can adsorb onto the mineral surface if the brine film breaks, rendering the medium oil-wet or mixed-wet. Mica and silica surfaces have been aged with brine and crude oils to induce oil component adsorption. Bulk oil is eventually replaced by water in these experiments by washing with common solvents without ever drying the mineral surface. The organic deposit on the mineral surface is studied by atomic force microscopy in the tapping mode under water. Drying the surface during the removal of bulk oil induces artifacts; it is essential to keep the surface wet at all times before atomic force microscopy or contact angle measurement. As the mean thickness of the organic deposit increases, the oil-water contact angle increases. The organic deposits left behind after extraction of oil by common aromatic solvents used in core studies, such as toluene and decalin, are thinner than those left behind by non-aromatic solvents, such as cyclohexane. The force of adhesion with a probe sphere for minerals aged with just the asphaltene fraction is similar to that of the whole oil. The force of adhesion for the minerals aged with just the resin fraction is the highest of all SARA (saturates, aromatics, resins, and asphaltenes) fractions.

Topics: Adsorption; Air; Aluminum Silicates; Microscopy, Atomic Force; Particle Size; Petroleum; Salts; Sensitivity and Specificity; Silicon; Surface Properties; Water; Wettability

The Acidithiobacillus ferrooxidans response to stress associated with the drying process is known to be the production of extracellular polymeric substance (EPS) coverage. Here, samples of A. ferrooxidans suspensions grown in 1.8 pH and 3.0 pH and dried on mica and silicon are shown to form a structure of isolated bacteria. Individual bacteria coverage patterns were imaged by atomic force microscopy (AFM) on hydrophobic (silicon) and hydrophilic (mica) substrates. A comparison of images of covered and uncovered bacteria establish the volume of individual EPS coverage. The EPS production for bacteria on hydrophobic substrates shows a substantial decrease (a factor of 30) in the EPS volume per bacterium when compared with the one on hydrophilic substrates. Shape and volume determination of EPS structures on bacteria as a function of hydrophobicity or hydrophilicity of the substrate may help to determine the functions of EPS on bacterial aggregates.

Topics: Acidithiobacillus; Aluminum Silicates; Culture Media; Hydrogen-Ion Concentration; Hydrophobic and Hydrophilic Interactions; Microscopy, Atomic Force; Polysaccharides, Bacterial; Silicon

Topics: Aluminum Silicates; Cadmium Compounds; Microscopy, Atomic Force; Microscopy, Confocal; Microscopy, Electron, Transmission; Models, Chemical; Nanoparticles; Nanotechnology; Pressure; Semiconductors; Silicon; Spectrometry, X-Ray Emission; Tellurium

The purpose of this study was to assess the weathering of finely ground phlogopite, a trioctahedral mica, by placing it in contact with heterotrophic (Bacillus cereus) and acidophilic (Acidithiobacillus ferrooxidans) cultures. X-ray diffraction analyses of the phlogopite sample before and after 24 weeks of contact in B. cereus cultures revealed a decrease in the characteristic peak intensities of phlogopite, indicating destruction of individual structural planes of the mica. No new solid phase products or interlayer structures were detected in B. cereus cultures. Acidithiobacillus ferrooxidans cultures enhanced the chemical dissolution of the mineral and formed partially weathered interlayer structures, where interlayer K was expelled and coupled with the precipitation of K-jarosite [KFe3(SO4)2(OH)6].

Topics: Acidithiobacillus; Aluminum; Aluminum Silicates; Bacillus cereus; Iron; Iron Compounds; Magnesium; Potassium; Silicon; Soil Microbiology

The arrangement of water molecules at charged aqueous interfaces is an important question in biology, electrochemistry, and geochemistry. Theoretical studies suggest that the molecules become arranged in several layers adjacent to a solid interface. Using atomic force microscopy we have measured the water dielectric-permittivity profile perpendicular to mica surfaces. The measured variable permittivity profile starting at epsilon approximately 4 at the interface and increasing to epsilon=80 about 10 nm from the surface suggests a reorientation of water molecule dipoles in the presence of the mica interfacial charge.

Topics: Aluminum Silicates; Biophysical Phenomena; Biophysics; Microscopy, Atomic Force; Models, Theoretical; Silicon; Surface Properties; Water

The effects of silicic acid, silica and clay minerals on the conversion of amorphous calcium phosphate to hydroxyapatite (HAP) were studied in vitro by a pH drop method. At a concentration range of 0.01-0.1 mM. silicic acid stimulated the rate of HAP transformation by about 30-40%. Silica stimulated the rate of HAP transformation by 33-43% at a concentration range of 0.05-1.5 mg/ml. The clay minerals, i.e. kaolin and talc, also stimulated the rate of HAP transformation by 40-90% at a concentration range of 0.4-10 mg/ml, but mica inhibited the reaction markedly at 10 mg/ml. The distribution of silicon in human supragingival dental calculus was studied by an electron-probe microanalyser. We found localized silicon distribution on the oral surface of the calculus. Such silicon-rich areas always contained silicon either alone or together with magnesium, aluminium, potassium, calcium and iron. This implies that the silicon-rich area may be opal and mica. Because silicic acid, silica, kaolin and talc stimulated and mica inhibited the in vitro calcium phosphate precipitation, it is possible that these silicon-rich areas may regulate the formation of the dental calculus.

Topics: Adult; Aged; Aluminum Silicates; Calcium; Calcium Phosphates; Chelating Agents; Chemical Precipitation; Child; Clay; Dental Calculus; Durapatite; Electron Probe Microanalysis; Female; Humans; Hydrogen-Ion Concentration; Hydroxyapatites; Male; Middle Aged; Minerals; Phosphates; Phosphorus; Silicic Acid; Silicon; Silicon Dioxide