Page last updated: 2024-08-26

pyrimidine dimers and oligonucleotides

pyrimidine dimers has been researched along with oligonucleotides in 47 studies

Research

Studies (47)

TimeframeStudies, this research(%)All Research%
pre-19907 (14.89)18.7374
1990's8 (17.02)18.2507
2000's13 (27.66)29.6817
2010's14 (29.79)24.3611
2020's5 (10.64)2.80

Authors

AuthorsStudies
Birch-Hirschfeld, E; Lang, H; Zimmer, C1
Chen, Z; Essigmann, JM; Treiber, DK1
Matsunaga, T; Mori, T; Nikaido, O1
Borden, A; Lawrence, CW; LeClerc, JE1
Ihara, M; Matsunaga, T; Mizuno, T; Nikaido, O1
Liuzzi, M; Paterson, MC; Weinfeld, M2
Jorns, MS; Sancar, A; Sancar, GB1
Hanawalt, PC; Lewis, RJ1
Keepers, JW; Kollman, P; Rao, SN1
Hopfinger, AJ; Nakata, Y1
Hanaoka, F; Iwai, S; Kamiya, H; Masutani, C; Matsukage, A; Murata, N; Murata, T; Ohtsuka, E1
Ghosh, R; Johnston, DA; Mitchell, DL1
Li, S; Waters, R1
Asano, K; Fujii, K; Kobayashi, H; Koizumi, T; Matsunaga, T; Miura, H; Morioka, H; Nikaido, O; Ohtsuka, E; Stewart, JD1
Butenandt, J; Carell, T; Eker, AP; Epple, R; Gramlich, V; Wallenborn, EU1
Nicholson, WL; Rebeil, R; Slieman, TA1
Bailly, C; Boykin, DW; Carrasco, C; Kumar, A; Stephens, CE; Wang, L; Wilson, WD1
Christine, KS; MacFarlane, AW; Stanley, RJ; Yang, K1
Hanawalt, PC; Kalogeraki, VS; Tornaletti, S1
Budĕsínský, M; Králíková, S; Masojídková, M; Rosenberg, I1
Sato, K; Seio, K; Sekine, M1
Hanaoka, F; Higurashi, M; Inase, A; Iwai, S; Kusumoto, R; Masutani, C; Ohtsuki, T1
Angelov, D; Beylot, B; Spassky, A1
Adair, JE; Dement, GA; Kwon, Y; Reeves, R; Smerdon, MJ1
Han, Q; Luo, Z; Mu, W; Wang, Y1
Kunkel, TA; McCulloch, SD1
Holman, MR; Ito, T; Rokita, SE1
Asagoshi, K; Bdour, HM; Brown, AR; Horton, JK; Lan, L; Liu, Y; Masaoka, A; Prasad, R; Sobol, RW; Taylor, JS; Wang, XH; Wilson, SH; Yasui, A1
Carell, T; Fazio, D; Glas, AF; Heil, K; Kaya, E; Maul, MJ; Schneider, S1
Frank, I; Friedrichs, J; Rössle, S1
Choo, J; Kang, SH; Kim, MJ; Lee, SC; Song, JM1
Kaczmarek, N; Mathieu, N; Naegeli, H1
Hanaoka, F; Iwai, S; Manabe, K; Masutani, C; Nishiguchi, K; Yamamoto, J1
Carell, T; Heil, K; Pearson, D1
Chen, CH; Li, L; Lin, G; Pink, M; Pu, J1
Karran, P; Macpherson, P; Reelfs, O; Ren, X; Xu, YZ; Young, AR1
Komatsu, Y; Mizutani, R; Nikaido, O; Ohtsuka, E; Sato, K; Satow, Y; Yokoyama, H1
Choi, JH; Gaddameedhi, S; Hu, J; Kemp, MG; Reardon, JT; Sancar, A1
Hanaoka, F; Iwai, S; Kunishi, T; Masutani, C; Oyama, T; Yamamoto, J1
Choi, JH; Gaddameedhi, S; Hu, J; Kemp, MG; Kim, SY; Sancar, A1
Ahn, EH; Fox, EJ; Loeb, LA; Shen, JC1
Folch-Cano, C; Rosas, A; Vallejos-Almirall, A; Vergara, C1
Bihr, L; Kuhlmann, A; Wagenknecht, HA1
Chaturvedi, R; Long, EC1
Gao, M; Hu, J; Huang, Y; Sancar, A; Selby, CP; Wu, S1
Blum, H; Braun, D; Bucher, DB; Fischaleck, M; Krebs, S; Kufner, CL; Mast, CB; Philippou-Massier, J; Zinth, W1

Reviews

1 review(s) available for pyrimidine dimers and oligonucleotides

ArticleYear
Chemical investigation of light induced DNA bipyrimidine damage and repair.
    Chemical Society reviews, 2011, Volume: 40, Issue:8

    Topics: DNA Damage; DNA Repair; Light; Oligonucleotides; Pyrimidine Dimers; Thymine; Ultraviolet Rays

2011

Other Studies

46 other study(ies) available for pyrimidine dimers and oligonucleotides

ArticleYear
Thymidine photoproducts of non-cyclobutane type as a crucial event in the conformation of UV-irradiated DNA.
    Acta biologica et medica Germanica, 1979, Volume: 38, Issue:9

    Topics: Chromatography, Paper; Circular Dichroism; Cyclobutanes; Formates; Nucleic Acid Conformation; Oligodeoxyribonucleotides; Oligonucleotides; Photochemistry; Poly dA-dT; Polydeoxyribonucleotides; Pyrimidine Dimers; Thymidine; Ultraviolet Rays

1979
An ultraviolet light-damaged DNA recognition protein absent in xeroderma pigmentosum group E cells binds selectively to pyrimidine (6-4) pyrimidone photoproducts.
    Nucleic acids research, 1992, Nov-11, Volume: 20, Issue:21

    Topics: Base Sequence; DNA; DNA Damage; DNA-Binding Proteins; HeLa Cells; Humans; Molecular Sequence Data; Oligonucleotides; Protein Binding; Pyrimidine Dimers; Ultraviolet Rays; Xeroderma Pigmentosum

1992
Base sequence specificity of a monoclonal antibody binding to (6-4)photoproducts.
    Mutation research, 1990, Volume: 235, Issue:3

    Topics: Animals; Antibodies, Monoclonal; DNA; Enzyme-Linked Immunosorbent Assay; Epitopes; Mice; Mice, Inbred BALB C; Mutation; Oligonucleotides; Polynucleotides; Pyrimidine Dimers; Sensitivity and Specificity; Tumor Cells, Cultured; Ultraviolet Rays

1990
The thymine-thymine pyrimidine-pyrimidone(6-4) ultraviolet light photoproduct is highly mutagenic and specifically induces 3' thymine-to-cytosine transitions in Escherichia coli.
    Proceedings of the National Academy of Sciences of the United States of America, 1991, Nov-01, Volume: 88, Issue:21

    Topics: Base Sequence; DNA; DNA Damage; Escherichia coli; Genetic Vectors; Isomerism; Molecular Sequence Data; Mutagenesis; Mutagens; Oligonucleotides; Photochemistry; Pyrimidine Dimers; SOS Response, Genetics; Transfection; Ultraviolet Rays

1991
Establishment of a monoclonal antibody recognizing cyclobutane-type thymine dimers in DNA: a comparative study with 64M-1 antibody specific for (6-4)photoproducts.
    Mutation research, 1991, Volume: 254, Issue:2

    Topics: Acetophenones; Animals; Antibodies, Monoclonal; Binding, Competitive; Cell Fusion; Cells, Cultured; Cloning, Molecular; Deoxyribodipyrimidine Photo-Lyase; DNA Damage; DNA Repair; Dose-Response Relationship, Drug; Dose-Response Relationship, Radiation; In Vitro Techniques; Mice; Mice, Inbred BALB C; Oligonucleotides; Pyrimidine Dimers; Ultraviolet Rays

1991
Enzymatic analysis of isomeric trithymidylates containing ultraviolet light-induced cyclobutane pyrimidine dimers. I. Nuclease P1-mediated hydrolysis of the intradimer phosphodiester linkage.
    The Journal of biological chemistry, 1989, Apr-15, Volume: 264, Issue:11

    Topics: Chromatography, DEAE-Cellulose; Chromatography, High Pressure Liquid; Deoxyribonucleases; DNA, Single-Stranded; In Vitro Techniques; Isomerism; Nucleotidases; Oligonucleotides; Phosphoric Diester Hydrolases; Photochemistry; Pyrimidine Dimers; Single-Strand Specific DNA and RNA Endonucleases; Thymidine Monophosphate; Thymine Nucleotides; Ultraviolet Rays

1989
Enzymatic analysis of isomeric trithymidylates containing ultraviolet light-induced cyclobutane pyrimidine dimers. II. Phosphorylation by phage T4 polynucleotide kinase.
    The Journal of biological chemistry, 1989, Apr-15, Volume: 264, Issue:11

    Topics: Animals; Base Composition; Chromatography, High Pressure Liquid; Dose-Response Relationship, Radiation; Fishes; In Vitro Techniques; Male; Nucleotidases; Oligonucleotides; Phosphorylation; Phosphotransferases; Polynucleotide 5'-Hydroxyl-Kinase; Pyrimidine Dimers; Single-Strand Specific DNA and RNA Endonucleases; Spermatozoa; Thymidine Monophosphate; Thymine Nucleotides; Ultraviolet Rays

1989
Identification of oligothymidylates as new simple substrates for Escherichia coli DNA photolyase and their use in a rapid spectrophotometric enzyme assay.
    Biochemistry, 1985, Apr-09, Volume: 24, Issue:8

    Topics: Deoxyribodipyrimidine Photo-Lyase; DNA Repair; Escherichia coli; Kinetics; Lyases; Oligodeoxyribonucleotides; Oligonucleotides; Pyrimidine Dimers; Spectrophotometry, Ultraviolet; Substrate Specificity

1985
Ligation of oligonucleotides by pyrimidine dimers--a missing 'link' in the origin of life?
    Nature, 1982, Jul-22, Volume: 298, Issue:5872

    Topics: Endonucleases; Escherichia coli; Oligonucleotides; Pyrimidine Dimers; T-Phages; Thymidine; Ultraviolet Rays

1982
The structure of d(CGCGAAT[]TCGCG) . d(CGCGAATTCGCG); the incorporation of a thymine photodimer into a B-DNA helix.
    Nucleic acids research, 1984, Jun-11, Volume: 12, Issue:11

    Topics: DNA; Hydrogen Bonding; Models, Molecular; Nucleic Acid Conformation; Oligodeoxyribonucleotides; Oligonucleotides; Photochemistry; Pyrimidine Dimers; Thermodynamics

1984
Predicted mode of intercalation of doxorubicin with dinucleotide dimers.
    Biochemical and biophysical research communications, 1980, Jul-31, Volume: 95, Issue:2

    Topics: Base Sequence; Chemistry, Organic; Doxorubicin; Molecular Conformation; Nucleic Acid Conformation; Oligodeoxyribonucleotides; Oligonucleotides; Organic Chemistry Phenomena; Pyrimidine Dimers

1980
Cyclobutane thymine dimers in a ras proto-oncogene hot spot activate the gene by point mutation.
    Nucleic acids research, 1993, May-25, Volume: 21, Issue:10

    Topics: 3T3 Cells; Amino Acid Sequence; Animals; Base Sequence; Chromatography, High Pressure Liquid; Cyclobutanes; DNA Restriction Enzymes; Genes, ras; Genetic Vectors; Mice; Molecular Sequence Data; Mutagenesis; Oligonucleotides; Point Mutation; Polymerase Chain Reaction; Pyrimidine Dimers; Transfection

1993
Generation of oligonucleotides containing site-specific cyclobutane pyrimidine dimers and pyrimidine(6-4)pyrimidinone photoproducts by immunoprecipitation.
    Nucleic acids research, 1995, Dec-11, Volume: 23, Issue:23

    Topics: Animals; Antibody Specificity; Base Sequence; DNA; DNA Damage; Molecular Sequence Data; Oligonucleotides; Precipitin Tests; Pyrimidine Dimers; Rabbits; Ultraviolet Rays

1995
Nucleotide level detection of cyclobutane pyrimidine dimers using oligonucleotides and magnetic beads to facilitate labelling of DNA fragments incised at the dimers and chemical sequencing reference ladders.
    Carcinogenesis, 1996, Volume: 17, Issue:8

    Topics: Base Sequence; DNA, Bacterial; Escherichia coli; Magnetics; Molecular Sequence Data; Oligonucleotides; Pyrimidine Dimers; Ultraviolet Rays

1996
Antibodies specific for (6-4) DNA photoproducts: cloning, antibody modeling and construction of a single-chain Fv derivative.
    Biochimica et biophysica acta, 1998, Jun-11, Volume: 1385, Issue:1

    Topics: Amino Acid Sequence; Antibodies, Monoclonal; Binding Sites, Antibody; DNA; Escherichia coli; Immunoglobulin Fragments; Immunoglobulin Heavy Chains; Immunoglobulin Light Chains; Immunoglobulin Variable Region; Models, Molecular; Molecular Sequence Data; Oligonucleotides; Polymerase Chain Reaction; Protein Conformation; Pyrimidine Dimers; Recombinant Proteins; Ultraviolet Rays

1998
A comparative repair study of thymine- and uracil-photodimers with model compounds and a photolyase repair enzyme.
    Chemistry (Weinheim an der Bergstrasse, Germany), 2000, Volume: 6, Issue:1

    Topics: Aspergillus nidulans; Crystallography, X-Ray; Deoxyribodipyrimidine Photo-Lyase; DNA Repair; Oligonucleotides; Photochemistry; Pyrimidine Dimers; Uracil

2000
Spore photoproduct (SP) lyase from Bacillus subtilis specifically binds to and cleaves SP (5-thyminyl-5,6-dihydrothymine) but not cyclobutane pyrimidine dimers in UV-irradiated DNA.
    Journal of bacteriology, 2000, Volume: 182, Issue:22

    Topics: Bacillus subtilis; Deoxyribodipyrimidine Photo-Lyase; DNA Repair; DNA, Bacterial; Oligonucleotides; Protein Binding; Proteins; Pyrimidine Dimers; Spores, Bacterial; Thymine; Ultraviolet Rays

2000
Evaluation of the influence of compound structure on stacked-dimer formation in the DNA minor groove.
    Biochemistry, 2001, Feb-27, Volume: 40, Issue:8

    Topics: Amidines; Base Pairing; Benzimidazoles; Binding Sites; Carbazoles; Cations; Circular Dichroism; DNA; DNA Footprinting; Furans; Guanidine; Netropsin; Nucleic Acid Conformation; Nucleic Acid Denaturation; Oligonucleotides; Pyrimidine Dimers; Spectrophotometry, Ultraviolet; Surface Plasmon Resonance

2001
Cyclobutylpyrimidine dimer base flipping by DNA photolyase.
    The Journal of biological chemistry, 2002, Oct-11, Volume: 277, Issue:41

    Topics: Base Pairing; Deoxyribodipyrimidine Photo-Lyase; DNA Repair; Escherichia coli; Flavin-Adenine Dinucleotide; Oligonucleotides; Pyrimidine Dimers; Spectrometry, Fluorescence; Temperature; Ultraviolet Rays

2002
Transcription arrest at a lesion in the transcribed DNA strand in vitro is not affected by a nearby lesion in the opposite strand.
    The Journal of biological chemistry, 2003, May-23, Volume: 278, Issue:21

    Topics: Animals; Base Sequence; DNA; DNA Damage; DNA Repair; DNA-Directed RNA Polymerases; Liver; Oligonucleotides; Pyrimidine Dimers; Rats; RNA; RNA Polymerase II; Templates, Genetic; Transcription Factors, General; Transcription, Genetic; Transcriptional Elongation Factors; Ultraviolet Rays; Viral Proteins

2003
Study on reactivity and protection of the alpha-hydroxyphosphonate moiety in 5'-nucleotide analogues: formation of the 3'-O-P-C(OH)-C4' internucleotide linkage.
    Nucleosides, nucleotides & nucleic acids, 2003, Volume: 22, Issue:3

    Topics: Models, Chemical; Molecular Structure; Nucleic Acid Conformation; Nucleotides; Oligodeoxyribonucleotides; Oligonucleotides; Organophosphonates; Pyrimidine Dimers; Stereoisomerism; Thymidine

2003
Synthesis and properties of a new oligonucleotide analogue containing an internucleotide squaryl amide linkage.
    Nucleic acids research. Supplement (2001), 2001, Issue:1

    Topics: Amides; Base Sequence; Circular Dichroism; Computational Biology; Computer Simulation; Cyclobutanes; Nucleic Acid Conformation; Nucleic Acid Hybridization; Oligonucleotides; Organophosphorus Compounds; Pyrimidine Dimers; Thermodynamics

2001
Identification and characterization of an intermediate in the alkali degradation of (6-4) photoproduct-containing DNA.
    The Journal of biological chemistry, 2003, Dec-19, Volume: 278, Issue:51

    Topics: Alkalies; Chromatography, High Pressure Liquid; DNA Damage; Hydrolysis; Mass Spectrometry; Nuclear Magnetic Resonance, Biomolecular; Oligonucleotides; Photolysis; Pyrimidine Dimers; Ultraviolet Rays

2003
Origin of the heterogeneous distribution of the yield of guanyl radical in UV laser photolyzed DNA.
    Biophysical journal, 2005, Volume: 88, Issue:4

    Topics: 8-Hydroxy-2'-Deoxyguanosine; Base Sequence; Biophysical Phenomena; Biophysics; Cations; Deoxyguanosine; Dimerization; DNA; DNA-Formamidopyrimidine Glycosylase; Edetic Acid; Electrophoresis, Polyacrylamide Gel; Free Radicals; Guanine; Ions; Lasers; Models, Chemical; Models, Statistical; Molecular Sequence Data; Nucleic Acid Conformation; Oligonucleotides; Oxazolone; Oxygen; Photolysis; Photons; Piperidines; Polymers; Pyrimidine Dimers; RNA; Spectrophotometry; Temperature; Ultraviolet Rays

2005
Inhibition of nucleotide excision repair by high mobility group protein HMGA1.
    The Journal of biological chemistry, 2005, Sep-16, Volume: 280, Issue:37

    Topics: Animals; Base Pair Mismatch; Blotting, Southern; Cell Line, Tumor; Cell Nucleus; Cell Separation; Cell Survival; Circular Dichroism; Dimerization; DNA; DNA Repair; Dose-Response Relationship, Radiation; Flow Cytometry; Gene Expression Regulation; Gene Expression Regulation, Neoplastic; Genome; HMGA1a Protein; Humans; Interleukin-2 Receptor alpha Subunit; Magnetic Resonance Spectroscopy; Mutation; Oligonucleotides; Oocytes; Promoter Regions, Genetic; Pyrimidine Dimers; Receptors, Interleukin; RNA Interference; RNA, Messenger; Sensitivity and Specificity; Time Factors; Transfection; Transgenes; Ultraviolet Rays; Up-Regulation; Xenopus

2005
Production of cis-syn thymine-thymine cyclobutane dimer oligonucleotide in the presence of acetone photosensitizer.
    Analytical biochemistry, 2006, Jun-01, Volume: 353, Issue:1

    Topics: Acetone; Chromatography, High Pressure Liquid; Dimerization; Nucleic Acid Conformation; Oligonucleotides; Photochemistry; Photosensitizing Agents; Pyrimidine Dimers; Research Design; Ultraviolet Rays

2006
Measuring the fidelity of translesion DNA synthesis.
    Methods in enzymology, 2006, Volume: 408

    Topics: Animals; Bacteriophage M13; DNA Damage; DNA Replication; DNA-Directed DNA Polymerase; Humans; Mutation; Oligonucleotides; Pyrimidine Dimers; Sequence Analysis, DNA; Templates, Genetic

2006
Self-repair of thymine dimer in duplex DNA.
    Journal of the American Chemical Society, 2007, Jan-10, Volume: 129, Issue:1

    Topics: Base Composition; Base Sequence; DNA; DNA Repair; Oligonucleotides; Photochemistry; Pyrimidine Dimers

2007
DNA polymerase beta-dependent long patch base excision repair in living cells.
    DNA repair, 2010, Feb-04, Volume: 9, Issue:2

    Topics: Animals; Base Sequence; Cell Extracts; Cell Line; Cell Survival; DNA Polymerase beta; DNA Repair; Endonucleases; Flap Endonucleases; Humans; Immunoblotting; Mice; Molecular Sequence Data; Oligonucleotides; Polymerase Chain Reaction; Protein Binding; Pyrimidine Dimers; Ultraviolet Rays; Xeroderma Pigmentosum Group A Protein

2010
DNA (6-4) photolyases reduce Dewar isomers for isomerization into (6-4) lesions.
    Journal of the American Chemical Society, 2010, Mar-17, Volume: 132, Issue:10

    Topics: Cytosine; Deoxyribodipyrimidine Photo-Lyase; DNA Damage; DNA Repair; DNA, Single-Stranded; Isomerism; Oligonucleotides; Pyrimidine Dimers; Thymidine

2010
The formation of DNA photodamage: the role of exciton localization.
    Chemphyschem : a European journal of chemical physics and physical chemistry, 2010, Jun-21, Volume: 11, Issue:9

    Topics: DNA Damage; Oligonucleotides; Pyrimidine Dimers; Quantum Theory; Thymine; Ultraviolet Rays

2010
Quantification of UV-induced cyclobutane pyrimidine dimers using an oligonucleotide chip assay.
    Analytical and bioanalytical chemistry, 2010, Volume: 397, Issue:6

    Topics: Biotin; Calibration; Deoxyribonuclease (Pyrimidine Dimer); DNA Breaks; DNA Damage; Fluorescent Dyes; Oligonucleotide Array Sequence Analysis; Oligonucleotides; Pyrimidine Dimers; Ultraviolet Rays; Viral Proteins

2010
Strand- and site-specific DNA lesion demarcation by the xeroderma pigmentosum group D helicase.
    Proceedings of the National Academy of Sciences of the United States of America, 2010, Oct-12, Volume: 107, Issue:41

    Topics: Adenosine Triphosphatases; Animals; CHO Cells; Cricetinae; Cricetulus; DNA Damage; DNA Repair; Oligonucleotides; Pyrimidine Dimers; Thermoplasmales; Ultraviolet Rays; Xeroderma Pigmentosum Group D Protein

2010
Photosensitized [2 + 2] cycloaddition of N-acetylated cytosine affords stereoselective formation of cyclobutane pyrimidine dimer.
    Nucleic acids research, 2011, Volume: 39, Issue:3

    Topics: 5-Methylcytosine; DNA-Directed DNA Polymerase; Humans; Hydrogen-Ion Concentration; Hydrolysis; Oligonucleotides; Organophosphorus Compounds; Photochemical Processes; Pyrimidine Dimers; Stereoisomerism; Temperature; Thymine; Ultraviolet Rays

2011
Chemical synthesis, crystal structure and enzymatic evaluation of a dinucleotide spore photoproduct analogue containing a formacetal linker.
    Chemistry (Weinheim an der Bergstrasse, Germany), 2011, Aug-22, Volume: 17, Issue:35

    Topics: Bacillus subtilis; Catalysis; Crystallography, X-Ray; DNA Damage; DNA Repair; DNA, Bacterial; Oligonucleotides; Photochemical Processes; Proteins; Pyrimidine Dimers; Spores, Bacterial; Stereoisomerism; Thymine; Ultraviolet Rays

2011
Identification of potentially cytotoxic lesions induced by UVA photoactivation of DNA 4-thiothymidine in human cells.
    Nucleic acids research, 2011, Volume: 39, Issue:22

    Topics: Animals; Cell Line; Cricetinae; DNA; DNA Damage; DNA Repair; Humans; Mutagenesis; Oligonucleotides; Pyrimidine Dimers; Reactive Oxygen Species; Skin; Thymidine; Ultraviolet Rays

2011
Structure of the DNA (6-4) photoproduct dTT(6-4)TT in complex with the 64M-2 antibody Fab fragment implies increased antibody-binding affinity by the flanking nucleotides.
    Acta crystallographica. Section D, Biological crystallography, 2012, Volume: 68, Issue:Pt 3

    Topics: Antibodies, Monoclonal; Antibody Affinity; Binding Sites, Antibody; Crystallography, X-Ray; DNA Damage; Immunoglobulin Fab Fragments; Models, Molecular; Oligonucleotides; Pyrimidine Dimers; Thymidine; Ultraviolet Rays

2012
Nucleotide excision repair in human cells: fate of the excised oligonucleotide carrying DNA damage in vivo.
    The Journal of biological chemistry, 2013, Jul-19, Volume: 288, Issue:29

    Topics: Animals; Cell Line; DNA Damage; DNA Repair; DNA-Binding Proteins; Humans; Models, Biological; Mutation; Oligonucleotides; Pyrimidine Dimers; Transcription Factor TFIIH; Transcription, Genetic; Ultraviolet Rays

2013
A cyclobutane thymine-N4-methylcytosine dimer is resistant to hydrolysis but strongly blocks DNA synthesis.
    Nucleic acids research, 2014, Volume: 42, Issue:3

    Topics: DNA; DNA Damage; DNA-Directed DNA Polymerase; Humans; Hydrolysis; Oligonucleotides; Pyrimidine Dimers; Thermodynamics

2014
Highly specific and sensitive method for measuring nucleotide excision repair kinetics of ultraviolet photoproducts in human cells.
    Nucleic acids research, 2014, Volume: 42, Issue:4

    Topics: Animals; Cell Line; Cricetinae; Cricetulus; DNA Repair; Humans; Kinetics; Luminescent Measurements; Oligonucleotides; Pyrimidine Dimers; Ultraviolet Rays

2014
A rapid assay for measuring nucleotide excision repair by oligonucleotide retrieval.
    Scientific reports, 2014, May-08, Volume: 4

    Topics: Cell Line; Cell Line, Tumor; DNA; DNA Damage; DNA Repair; HEK293 Cells; Humans; Oligonucleotides; Pyrimidine Dimers; Transcription, Genetic

2014
Development of liquid chromatography tandem mass spectrometry method to quantify cyclobutane pyrimidine dimer photolyase activity by detection of 15mer oligonucleotide as reaction product.
    Journal of chromatography. A, 2020, Jan-25, Volume: 1611

    Topics: Bacterial Proteins; Biocatalysis; Chromatography, Liquid; Deoxyribodipyrimidine Photo-Lyase; Enzyme Assays; Kinetics; Oligonucleotides; Pyrimidine Dimers; Synechococcus; Tandem Mass Spectrometry

2020
How Far Does Energy Migrate in DNA and Cause Damage? Evidence for Long-Range Photodamage to DNA.
    Angewandte Chemie (International ed. in English), 2020, 09-28, Volume: 59, Issue:40

    Topics: DNA; DNA Damage; Energy Transfer; Epigenomics; Oligonucleotides; Pyrimidine Dimers; Ultraviolet Rays

2020
Mechanistic studies of dinucleotide and oligonucleotide model cyclobutane pyrimidine dimer (CPD) DNA lesions under alkaline conditions.
    Bioorganic & medicinal chemistry, 2022, 01-15, Volume: 54

    Topics: DNA Damage; Molecular Structure; Oligonucleotides; Pyrimidine Dimers; Sodium Hydroxide; Ultraviolet Rays

2022
A new technique for genome-wide mapping of nucleotide excision repair without immunopurification of damaged DNA.
    The Journal of biological chemistry, 2022, Volume: 298, Issue:5

    Topics: Chromosome Mapping; DNA; DNA Damage; DNA Repair; Genome; Oligonucleotides; Pyrimidine Dimers; Ultraviolet Rays

2022
Sequence dependent UV damage of complete pools of oligonucleotides.
    Scientific reports, 2023, 02-14, Volume: 13, Issue:1

    Topics: DNA; DNA Damage; Oligonucleotides; Pyrimidine Dimers; Ultraviolet Rays

2023