nitrophenols and 4-nitrophenyl-butyrate

We developed an artificial hydrolase based on the symmetrical Pizza6 β-propeller protein for the metal-free hydrolysis of 4-nitrophenyl acetate and butyrate. Through site-specific mutagenesis and crystallisation studies, the catalytic mechanism was investigated and found to be dependent on a threonine-histidine dyad. The mutant with additional histidine residues generated the highest kcat values, forming a His-His-Thr triad and matched previously reported metalloenzymes. The highly symmetrical β-propeller artificial enzymes and their protein-metal complexes have potential to be utilised in bioinorganic and supramolecular chemistry, as well as being developed further into 2D/3D catalytic materials.

Topics: Amino Acid Sequence; Aspartic Acid; Butyrates; Catalysis; Copper; Histidine; Hydrolases; Hydrolysis; Kinetics; Mutagenesis, Site-Directed; Nitrophenols; Protein Engineering; Protein Structure, Tertiary; Threonine; Zinc

Esterases catalyze the cleavage and formation of ester bonds and are members of the diverse family of α/β hydrolase fold. They are useful in industries from different sectors, such as food, detergent, fine chemicals, and biofuel production. In a previous work, 30 positive clones for lipolytic activity were identified from a metagenomic library of a microbial consortium specialized in diesel oil degradation. In this study, a putative gene encoding an esterase/lipase, denominated est8, has been cloned and the corresponding protein expressed recombinantly, purified to homogeneity and characterized functional and structurally. We show that the protein codified by est8 gene, denominated Est8, is an alkaline esterase with high catalytic efficiency against p-nitrophenyl acetate and stable in the presence of up to 10% dimethyl sulfoxide. The three-dimensional structure of Est8 was determined at 1.85-Ǻ resolution, allowing the characterization of the substrate-binding pocket and features that rationalize the preference of Est8 for short-chain substrates. In an attempt to increase the size of ligand-binding pocket and enzyme activity against distinct substrates of long chain, we mutated two residues (Met

Topics: Butyrates; Cloning, Molecular; Crystallization; Crystallography, X-Ray; Enzyme Stability; Esterases; Gene Library; Hydrogen-Ion Concentration; Hydrolysis; Lipase; Lipolysis; Metagenomics; Microbial Consortia; Nitrophenols; Recombinant Proteins; Substrate Specificity

Topics: Bacillus; Biodegradable Plastics; Biodegradation, Environmental; Butyrates; Carboxylic Ester Hydrolases; Enzyme Stability; Nitrophenols; Polyesters; Substrate Specificity; Temperature

Two novel esterases from the anaerobe Clostridium botulinum ATCC 3502 (Cbotu_EstA and Cbotu_EstB) were expressed in Escherichia coli BL21-Gold(DE3) and were found to hydrolyze the polyester poly(butylene adipate-co-butylene terephthalate) (PBAT). The active site residues (triad Ser, Asp, His) are present in both enzymes at the same location only with some amino acid variations near the active site at the surrounding of aspartate. Yet, Cbotu_EstA showed higher kcat values on para-nitrophenyl butyrate and para-nitrophenyl acetate and was considerably more active (sixfold) on PBAT. The entrance to the active site of the modeled Cbotu_EstB appears more narrowed compared to the crystal structure of Cbotu_EstA and the N-terminus is shorter which could explain its lower activity on PBAT. The Cbotu_EstA crystal structure consists of two regions that may act as movable cap domains and a zinc metal binding site.

Topics: Butyrates; Catalytic Domain; Clostridium botulinum; Crystallography, X-Ray; Esterases; Hydrolysis; Models, Molecular; Nitrophenols; Polyesters; Protein Conformation; Substrate Specificity; Zinc

Organophosphate insecticides (OPs) continue to be an important class of agrochemicals used in modern agriculture worldwide. Even though these pesticides persist in the environment for a relatively short time, they show a high acute toxicity that may represent a serious hazard for wildlife. Sub-lethal effects on non-target species are a focus in pest management programs and should be used as biomarkers. Cholinesterases (ChEs) are the most used biomarker of OP exposure in vertebrate and invertebrate species. However, the combined monitoring of ChE and carboxylesterase (CE) activities may provide a more useful indication of exposure and effect of the organisms. The objective of the present work was to find the most sensitive combination of enzyme, substrate, tissue and capacity to recovery of B-esterases in the freshwater gastropod Planorbarius corneus exposed to the OP azinphos-methyl. For this purpose, ChE and CE activities in different tissues of P. corneus (head-foot, pulmonary region, digestive gland, gonads and whole organism soft tissue) were studied. Measurements of ChE activity were performed using three substrates: acetylthiocholine, propionylthiocholine and butyrylthiocholine and CE activity using four different substrates: p-nitrophenyl acetate, p-nitrophenyl butyrate, 1-naphthyl acetate, and 2-naphthyl acetate in control and exposed organisms. Finally, the recovery rates of ChE and CE activities following 48h exposure to azinphos-methyl were analyzed. Our results show a preference for acetylthiocholine as substrate, a high inhibition with eserine (a selective ChE inhibitor) and inhibition with excess of substrate in all the analyzed tissues. The highest ChE and CE activity was found in the pulmonary region and in the digestive gland, respectively. The highest CE V

Topics: Animals; Azinphosmethyl; Biomarkers; Butyrates; Carboxylic Ester Hydrolases; Cholinesterases; Inhibitory Concentration 50; Insecticides; Kinetics; Nitrophenols; Organophosphorus Compounds; Snails; Substrate Specificity; Water Pollutants, Chemical

It is shown by rational site-directed mutagenesis of the lid region in Thermomyces lanuginosus lipase that it is possible to generate lipase variants with attractive features, e.g., high lipase activity, fast activation at the lipid interface, ability to act on water-soluble substrates, and enhanced calcium independence. The rational design was based on the lid residue composition in Aspergillus niger ferulic acid esterase (FAEA). Five constructs included lipase variants containing the full FAEA lid, a FAEA-like lid, an intermediate lid of FAEA and TlL character, and the entire lid region from Aspergillus terreus lipase (AtL). To investigate an altered activation mechanism for each variant compared to that of TlL, a combination of activity- and spectroscopic-based measurements were applied. The engineered variant with a lid from AtL displayed interfacial activation comparable to that of TlL, whereas variants with FAEA lid character showed interfacial activation independence with pronounced activity toward pNP-acetate and pNP-butyrate below the critical micelle concentration. For variants with lipase and esterase character, lipase activity measurements further indicated a faster activation at the lipid interface. Relative to their activity toward pNP-ester substrates in calcium-rich buffer, all lid variants retained between 15 and 100% activity in buffer containing 5 mM EDTA whereas TlL activity was reduced to less than 2%, demonstrating the lid's central role in governing calcium dependency. For FAEA-like lid variants, accessible hydrophobic surface area measurements showed an approximate 10-fold increase in the level of binding of extrinsic fluorophores to the protein surface relative to that of TlL accompanied by a blue shift in emission indicative of an open lid in aqueous solution. Together, these studies report on the successful alteration of the activation mechanism in TlL by rational design creating novel lipases with new, intriguing functionalities.

Topics: Amino Acid Sequence; Aspergillus; Butyrates; Carboxylic Ester Hydrolases; Decanoates; Enzyme Activation; Eurotiales; Fungal Proteins; Hydrolysis; Hydrophobic and Hydrophilic Interactions; Lipase; Models, Molecular; Molecular Sequence Data; Mutation; Nitrophenols; Protein Conformation

When used as an N-terminal fusion expression partner, the Escherichia coli stress-responsive protein, CysQ dramatically increased the cytoplasmic solubility of various aggregation-prone heterologous proteins: Pseudomonas putida cutinase (CUT), human granulocyte colony-stimulating factor (hG-CSF), human ferritin light chain (hFTN-L), arginine deiminase (ADI), human interleukin-2 (IL2), human activation induced cytidine deaminase (AID), and deletion mutant of human glutamate decarboxylase (GAD448-585). As compared with well-known fusion tags such as glutathione-S-transferase (GST) and maltose-binding protein (MBP), the performance of CysQ as solubility enhancer was evidently better than GST and was similar to or better than MBP for the seven heterologous proteins above. This is likely due to the intrinsic ability of CysQ to form its native conformation, probably promoting the binding of molecular chaperones during the folding of CysQ-fusion protein. When used as a substrate, p-nitrophenyl butyrate (PNB) was successfully hydrolyzed to p-nitrophenol by CysQ-CUT fusion mutant. Even after CysQ was removed, the solubility of hFTN-L and hG-CSF, the secondary structure of hG-CSF, and self-assembly activity of hFTN-L were successfully maintained. Conclusively, it seems that CysQ is a highly effective solubility enhancer and fusion expression partner for the production of a variety of bio-active recombinant proteins.

Topics: Apoferritins; Butyrates; Carboxylic Ester Hydrolases; Cytoplasm; Escherichia coli; Granulocyte Colony-Stimulating Factor; Humans; Molecular Chaperones; Nitrophenols; Phosphoric Monoester Hydrolases; Protein Aggregates; Protein Folding; Pseudomonas putida; Recombinant Fusion Proteins; Solubility

Acetyl xylan esterase (AXE) from basidiomycete Coprinopsis cinerea Okayama 7 (#130) was functionally expressed in Pichia pastoris with a C-terminal tag under the alcohol oxidase 1 (AOX1) promoter and secreted into the medium at 1.5 mg l(-1). Its molecular mass was estimated to be 65.5 kDa based on the SDS-PAGE analysis, which is higher than the calculated molecular mass of 40 kDa based on amino acid composition. In-silico analysis of the amino acid sequence predicted two potential N-glycosylation sites. Results from PNGase F deglycosylation and mass spectrum confirmed the presence of N-glycosylation on the recombinant AXE with predominant N-glycans HexNAc2Hex9-16. The recombinant AXE showed best activity at 40 °C and pH 8. It showed not only acetyl esterase activity with a Km of 4.3 mM and a Vmax of 2.15 U mg(-1) for hydrolysis of 4-nitrophenyl acetate but also a butyl esterase activity for hydrolysis of 4-nitrophenyl butyrate with a Km of 0.11 mM and Vmax of 0.78 U mg(-1). The presence of two additional amino acid residues at its native N-terminus was found to help stabilize the enzyme against the protease cleavages without affecting its activity.

Topics: Acetylesterase; Agaricales; Butyrates; Cloning, Molecular; Electrophoresis, Polyacrylamide Gel; Enzyme Stability; Gene Expression; Glycosylation; Hydrogen-Ion Concentration; Kinetics; Molecular Weight; Nitrophenols; Pichia; Protein Processing, Post-Translational; Temperature

Hydrolysis of carboxylic esters p-nitrophenyl acetate (pNPA), p-nitrophenyl butyrate (pNPB) and p-nitrophenyl trimethyl acetate (pNPTA) was examined in oxovanadate solutions by means of (1)H and (51)V NMR spectroscopy. In the presence of a mixture of oxovanadates, the hydrolysis of carboxyester bonds in pNPA proceeds under physiological conditions (37 °C, pD = 7.4) with a rate constant of k(obs) = 3.0 × 10(-5) s(-1) representing an acceleration of at least one order of magnitude compared to the uncatalyzed cleavage. EPR and NMR spectra did not show evidence for the formation of paramagnetic species, excluding the possibility of V(+5) reduction to V(+4), and indicating that the cleavage of the carboxyester bond is purely hydrolytic. The pH dependence of k(obs) revealed that the hydrolysis is slow in acidic media but rapidly accelerates in basic solutions. Comparison of the rate profile with the concentration profile of polyoxovanadates shows a clear overlap of the k(obs) profile with the concentration of monovanadate (V(1)). Kinetic experiments at 37 °C using a fixed amount of pNPA and increasing amounts of V(1) permitted the calculation of catalytic (k(c) = 1 x10(-4) s(-1)) and formation constant for the pNPA-V(1) complex (K(f) = 17.5 M(-1)). The (51)V NMR spectra of a reaction mixture revealed broadening and shifting of the (51)V NMR resonances of the V(1) and V(2) upon addition of increasing amount of pNPA, suggesting a dynamic exchange process between vanadates and pNPA, occurring via a rapid association-dissociation equilibrium. The origin of the hydrolytic activity of vanadate is most likely a combination of its nucleophilic nature and the chelating properties which can lead to the stabilization of the transition state.

Topics: Butyrates; Catalysis; Electron Spin Resonance Spectroscopy; Hydrolysis; Kinetics; Magnetic Resonance Spectroscopy; Nitrophenols; Thermodynamics; Vanadates

Lactobacillus plantarum is an important lactic acid bacterium, usually found as natural inhabitant of food, such as fermented vegetables and meat products. However, little information about lactic acid bacteria, especially concerning L. plantarum, as a source of useful enzymes has been reported. The aim of this study was to clone, express in Escherichia coli, purify, and characterize an esterase from L. plantarum ATCC 8014. The esterase gene (1014 bp) was amplified and cloned in pET14b expression vector to express a His(6)-tagged protein in E. coli. Recombinant L. plantarum esterase was purified by Ni-NTA resin, presenting an apparent molecular mass of about 38 kDa. It presented highest activity at pH 6.0 and 40 degrees C. Also, it presented preference for p-nitrophenyl butyrate, but hydrolyzed more efficiently p-nitrophenyl acetate. Besides, this study shows, for the first time, CD data about secondary structure of an esterase from L. plantarum.

Topics: Amino Acid Sequence; Bacterial Proteins; Butyrates; Cloning, Molecular; DNA, Bacterial; Escherichia coli; Esterases; Genes, Bacterial; Hydrogen-Ion Concentration; Hydrolysis; Kinetics; Lactobacillus plantarum; Molecular Sequence Data; Molecular Weight; Nitrophenols; Plasmids; Protein Structure, Secondary; Recombinant Proteins; Sequence Analysis, DNA; Sequence Homology, Amino Acid; Spectrophotometry, Ultraviolet; Substrate Specificity; Temperature

Human triacylglycerol hydrolase (hTGH) has been shown to play a role in hepatic lipid metabolism. Triacylglycerol hydrolase (TGH) hydrolyzes insoluble carboxylic esters at lipid/water interfaces, although the mechanism by which the enzyme adsorbs to lipid droplets is unclear. Three-dimensional modeling of hTGH predicts that catalytic residues are adjacent to an alpha-helix that may mediate TGH/lipid interaction. The helix contains a putative neutral lipid binding domain consisting of the octapeptide FLDLIADV (amino acid residues 417-424) with the consensus sequence FLXLXXXn (where n is a nonpolar residue and X is any amino acid except proline) identified in several other proteins that bind or metabolize neutral lipids. Deletion of this alpha-helix abolished the lipolytic activity of hTGH. Replacement of F417 with alanine reduced activity by 40% toward both insoluble and soluble esters, whereas replacement of L418 and L420 with alanine did not. Another potential mechanism of increasing TGH affinity for lipid is via reversible acylation. Molecular modeling predicts that C390 is available for covalent acylation. However, neither chemical modification of C390 nor mutation to alanine affected activity. Our findings indicate that F417 but not L418, L420, or C390 participates in substrate hydrolysis by hTGH.

Topics: Acylation; Amino Acid Sequence; Animals; Binding Sites; Butyrates; Catalysis; Cell Line; Chlorocebus aethiops; COS Cells; Cysteine; Gene Deletion; Gene Expression; Humans; Hymecromone; Iodoacetamide; Lipase; Mercaptoethanol; Mutagenesis, Site-Directed; Mutation; Nitrophenols; Phenylalanine; Point Mutation; Protein Folding; Recombinant Proteins; Sequence Homology, Amino Acid; Spodoptera; Substrate Specificity; Transfection

The interfacial activation of Candida antarctica lipase A (CALA) and B (CALB) has been investigated and compared with that of Humicola lanuginosa lipase (HLL). CALB displayed no interfacial activation towards p-nitrophenyl butyrate (PNPB) when exceeding the solubility limit of the substrate. No activation was observed towards p-nitrophenyl acetate (PNPA) at the addition of sodium dodecyl sulfate (SDS) nor in the presence of a solid polystyrene surface. The catalytic action of CALB was very different from that of Humicola lanuginosa lipase, which showed a pronounced interfacial activation with the same substrates. The basis for the anomalous behaviour of CALB is proposed to be due to the absence of a lid that regulates the access to the active site. In contrast to CALB, CALA expressed interfacial activation, but the activation was not as prominent as for Humicola lanuginosa lipase (HLL). The structural basis for the activation of CALA is unknown.

Topics: Adsorption; Binding Sites; Butyrates; Candida; Enzyme Activation; Lipase; Mitosporic Fungi; Nitrophenols; Protein Conformation; Protein Structure, Secondary; Sodium Dodecyl Sulfate; Surface Properties; Triglycerides