Page last updated: 2024-08-17

lysine and isomethyleugenol

lysine has been researched along with isomethyleugenol in 2555 studies

Research

Studies (2,555)

TimeframeStudies, this research(%)All Research%
pre-1990214 (8.38)18.7374
1990's51 (2.00)18.2507
2000's681 (26.65)29.6817
2010's1324 (51.82)24.3611
2020's285 (11.15)2.80

Authors

AuthorsStudies
Bradbury, JH; Brown, LR3
Ebert, C; Ebert, G1
Gassen, HG; Khanh, NQ; Lipecky, R1
Kakimoto, Y; Konishi, H; Matsuoka, Y; Miyake, M1
Miyake, M1
Léonis, J; Looze, Y; Polastro, E1
Crichton, RR; De Wolf, B; Parfait, R1
Mozes, E1
Hayashi, H; Koiwai, O; Ohba, M; Tanada, S1
Broquist, HP; Rebouche, CJ1
Dimaria, P; Kim, S; Paik, WK; Pearson, E1
Warme, PK1
Lapis, K; Szende, B; Tyihák, E1
Durban, E; Kim, S; Nochumson, S; Paik, WK1
Deconinck, MM; Devogel, MR; Leonis, J; Looze, YR; Mailier, EL; Polastro, ET; Schnek, AG1
Kakiuchi, S; Miyake, M1
Bosshard, HR; Rieder, R1
Bosshard, HR1
Barnes, WT; Kalasz, H; Kovacs, GH; Nagy, J; Tyihak, E1
Baxter, CS; Byvoet, P; Sayre, DF2
Colson, C1
Chang, FN1
Kim, S; Nochumson, S; Paik, WK2
Hartley, BS; Kraal, B1
L'Italien, JJ; Laursen, RA1
ElAmin, B; Means, GE1
Hempel, K; Lange, HW; Roos, G; Stöcker, W; Thomas, G1
Allfrey, VG; Boffa, LC; Sterner, R; Vidali, G1
Dearborn, DG; Gerken, TA; Jentoft, JE; Jentoft, N2
Deyl, Z; Helm, R; Vancikova, O1
Cagan, RH; Deibler, G; Martenson, RE; Morris, RW1
Cherkasov, IA; Chstiakova, LA; Kravchenko, NA1
Bursics, L; Jeney, A; Kopper, L; Lapis, K; Szarvas, T; Szende, B; Tyihák, E; Ujhelyi, E1
Morgan, HE; Watkins, CA1
Kakimoto, Y; Miyake, M2
Chang, CN; Chang, N1
Furano, AV; Klagsbrun, M1
Bailey, FJ; Beckerton, A; Bolton, N; Buttery, PJ1
Hempel, K; Lange, HW2
Hempel, K; Lange, HW; Thomas, G2
Huszar, G4
Candido, EP; Dixon, GH; Honda, BM1
Candido, PM; Dixon, GH; Honda, BM1
Chakrabarty, S; Duerre, JA1
Ferenz, HJ; Roehrkasten, A1
Lazarides, E; Lin, JM; Wang, C1
Kim, S; Paik, WK; Rajpurohit, R; Syed, S1
Lund-Katz, S; Phillips, MC; Sparks, DL1
Bello, J1
Gerhardt, KO; Katz, ML1
Bergman, LW; Cessay, KJ; Tuck, MT1
Ito, S; Matsumoto, H; Miyazaki, T; Suzuki, K1
Andrisani, OM; Dixon, JE1
Katz, ML; Rodrigues, M1
Cleary, S; DeVos, AM; Kelley, RF1
Goldberg, M; Jennissen, HP; Rakutt, WD; Ziegenhagen, R1
Barber, CV; Mannik, M; Nardella, FA; Teller, DC1
Janas, T; Kilian, M; Przestalski, S1
Kung, C; Lukas, TJ; Wallen-Friedman, M; Watterson, DM1
Jentoft, JE; Rayford, R1
Sherman, M; Sypherd, PS1
Dick, LR; Geraldes, CF; Gray, CW; Gray, DM; Sherry, AD1
Carvounis, CP; Carvounis, G; Wilk, BJ1
Chêne, N; de la Llosa, P; Martal, J2
Lukas, TJ; Roberts, DM; Rowe, PM; Siegel, FL; Watterson, DM1
Lyon, M1
Amidei, K; Barber, M; Byvoet, P; Lowell, N; Trudeau, W1
Blank, GS; George, E; Rosenberry, TL; Sternlicht, H; Szasz, J; Yaffe, MB1
Jancso, A; Lu, RC; Szilagyi, L1
Lambert, SF; Thomas, JO1
Bordás, B; Cserháti, T; Tyihák, E1
Bosch, L; Johanns, ES; Kraal, B; Persoon, NL; Sinjorgo, KM; Van Noort, JM1
Kakimoto, Y; Kawamoto, T; Miyake, M; Morino, H1
Klaude, M; von der Decken, A1
Barber, DL; George, R; Schneider, WJ1
Harper, JW; Lobb, RR1
Desrosiers, R; Tanguay, RM1
Hubert, E; Iriarte, A; Martinez-Carrion, M; Roberts, WJ1
Mann, DM; Vanaman, TC1
Hong, SY; Kim, S; Lee, HW; Paik, WK; Park, KS; Shin, S1
Ibdah, JA; Letizia, JY; Lund-Katz, S; Phillips, MC; Thomas, MT1
Dick, LR; Gray, DM; Newkirk, MM; Sherry, AD1
DasGupta, BR; Sathyamoorthy, V1
Ivanov, VO; Kosykh, VA; Preobrazhensky, SN; Repin, VS; Smirnov, VN; Tsibulsky, VP1
Inoue, R; Kakimoto, Y; Miyaka, M; Mizobuchi, M1
Longstaff, C; Rando, RR1
Reporter, M1
Barker, GR; Hodges, P1
Elzinga, M; Huszar, G1
Broquist, HP; Horne, DW1
Garcet, S; Huyen, VN; Servin, A1
Bauer, S; Masler, L; Sikl, D1
Egan, ML; Maurer, PH; Smyth, RD1
Byvoet, P3
Bećarević, A; Sein, KT1
Chuang, RY; Doi, RH1
Kothari, RM; Shankar, V; Taylor, MW1
Evans, J; Kimball, A; Nixon, J; Spoor, T1
Cheng, ST; Lauzon, G; Tsai, CS; Tsai, YH1
Baxter, CS; Byvoet, P1
Bhattacharyya, A; Jeanloz, RW; Roberts, GP1
Ascoli, M; Puett, D1
Edgar, DH; Hope, DB1
Duerre, JA; Lee, CT1
Lapis, K; Stotz, GY; Szende, B; Tyihák, E1
Melnikova, AF; Mirzabekov, AD1
Evans, HJ; Hill, RL; Steinman, HM1
Möller, W; Terhorst, C; Wittmann-Liebold, B1
Crichton, RR; Moore, G1
Dudock, B; Michael, M; Roe, B1
Amons, R; Möller, W1
Haber, JE; Wejksnora, PJ1
Bonner, J; Douvas, AS; Johnson, JD1
Chang, CN; Chang, FN; Paik, WK1
Banks, TE; Shafer, JA2
Hempel, K; Lange, HW; Löwer, R3
McKay, IC; Wilkinson, PC1
Borun, TW; Lee, HW; Paik, WK1
Franchi-Gazzola, R; Gazzola, GC; Guidotti, GG; Ronchi, P1
Fitzgerald, PJ; Marsh, WH1
De la Llosa, P; Durosay, M; Jutisz, M; Tertrin-Clary, C1
Shinoda, T; Tsuzukida, Y1
Kass, L1
Klyszejko-Stefanowicz, L; Lipińska, A1
Yamamoto, H; Yang, JT1
Eichhorn, C; Hempel, K; Lange, H; Löwer, R1
Dekker, EE; Hansen, BA; Lane, RS1
Cuprak, LJ; Liss, M; Maxam, AM1
Fukui, T; Itoh, T; Osawa, S; Otaka, E1
Kagamiyama, H; Morino, Y; Snell, EE1
DeLange, RJ; Smith, EL1
Chandra, P; Kersten, H; Kersten, W; Tanck, W; Wiedemhöver, W1
Goldman, M; Griffin, AC1
Kakimoto, Y1
Diederich, J; Lauschke, U; Lodemann, E; Mohrbutter, K; Wacker, A1
Korn, ED; Weihing, RR2
Borun, TW; Paik, WK; Pearson, D1
Lee, HW; Paik, WK1
Kim, S; Lee, HW; Paik, WK1
Byvoet, P; Hardin, JM; Noland, BJ; Shepherd, GR1
Kim, S; Paik, WK4
Jacq, C; Lederer, F1
Ferri, G; Forcina, BG; Ronchi, S; Zapponi, MC1
Kopper, L; Lapis K Tyihák, E; Szende, B1
Hardin, JM; Noland, BJ; Shepherd, GR1
Héléne, C; Leng, M; Ramstein, J1
Gallwitz, D1
Boulter, D; Ramshaw, JA; Richardson, M1
Benoiton, NL; Coggins, JR; Demayo, RE; Moore, GJ1
Krzysik, B; McManus, I; Vergnes, JP1
Kaye, AM; Sheratzky, D1
Benoiton, NL; Seely, JH2
Mitchell, HK; Scott, WA1
Hardy, M; Harris, I; Perry, SV; Stone, D1
Kanarek, L; Strosberg, AD1
Akazawa, S; Kakimoto, Y1
Bonner, J; DeLange, RJ; Smith, EL1
Burdon, RH1
Corbin, JL; Reporterer, M1
Baratti, J; Desnuelle, P; Maroux, S1
Allfrey, VG; Mirsky, AE; Tidwell, T1
Diamond, S; Hansen, S; Perry, TL1
Bonner, J; DeLange, RJ; Fambrough, DM; Smith, EL1
Taber, RL; Vincent, WS1
Davies, DD; Patterson, BD1
Birkofer, L; Hempel, K; Lange, HW2
Harris, CM1
Allfrey, VG; Gershey, EL; Haslett, GW; Vidali, G1
Dimaria, P; Farooqui, J; Kim, CS; Kim, S; Kueppers, F; Paik, WK1
Delahunty, MD; Flowers, BK; Karpel, RL; Merkler, DJ1
Allfrey, VG; Boffa, LC; Gruss, RJ1
Biemann, K; Gupta, CM; Huang, KS; Khorana, HG; Liao, MJ; Royal, N1
Farooqui, J; Gupta, A; Millett, F; Paik, WK; Smith, HT1
Riordan, JF; Shapiro, R1
Rosenberry, TL; Sherman, G; Sternlicht, H1
Batstone-Cunningham, RL; Dill, K; Hardy, RE1
Alonzo, N; Elzinga, M1
Marsh, JW; Nahum, A; Steiner, DF1
Rusznák, I; Szarvas, T; Szende, B; Trézl, L; Tyihák, E1
Lazarides, E; Wang, C1
Feeney, RE; Osuga, DT; Wong, WS1
Goux, WJ; Sherry, AD; Teherani, J1
James, TL; Keepers, J; Sherry, AD; Teherani, J1
Dunn, WA; Englard, S; Rettura, G; Seifter, E1
Paik, WK1
Curtiss, LK; Fisher, M; Steinbrecher, UP; Witztum, JL1
Gray, DM; Kansy, JW; Sherry, AD; Teherani, J1
Holcombe, KS; Innerarity, TL; Mahley, RW; Melchior, GW; Weisgraber, KH1
Rusznák, I; Trézl, L; Tyihák, E1
Bursics, L; Gyapay, G; Jeney, A; Lapis, K; Szende, B; Tyihák, E1
Cox, R; Tuck, MT1
Calvo-Fernandez, P; Martinez-Carrion, M1
Lou, MF; Siena, M1
Goodman, DS; Kawakami, M1
Blankenship, DT; Harmony, JA; Hui, DY; Noel, JG1
Benya, PD; Cheung, DT; Gorn, A; Nimni, ME1
Jennings, ML1
Clarke, S; Lazarides, E; O'Connor, CM; Wang, C1
Garcia, R; Hiatt, WR; Merrick, WC; Sypherd, PS1
Rushbrook, JI; Stracher, A; Yuan, AI1
Turco, J; Winkler, HH1
Franke, P; Hatanaka, Y; Hucho, F; Machold, J; Tsetlin, VI; Utkin, YN1
Dedova, IV; Levitskiĭ, DI; Nikolaeva, OP; Pavlov, DA; Poglazov, BF; Potekhin, SA1
Buss, JE; Cochrane, CG; Der, CJ; Jackson, JH; Li, JW1
Thulin, E; Vogel, HJ; Zhang, M1
Fruchart, JC; Leroy, A; Lippens, G; Parra, HJ; Wieruszeski, JM1
Bergman, LW; Ceesay, KJ; Rider, LR; Tuck, MT1
Bivin, DB; Khoroshev, M; Morales, M; Ue, K1
Sternlicht, H; Szasz, J; Yaffe, MB1
Tokai, H; Yokota, A1
Huque, ME; Vogel, HJ1
Christianson, JS; Gao, CL; Katz, ML; Koppang, N; Norbury, NE; Siakotos, AN1
Asin, KE; Bednarz, L; Bennett, MJ; Bianchi, BR; Gore, PA; Miller, TR; Nikkel, AL; Stashko, M; Wang, SS; Witte, DG1
Mavri, J; Vogel, HJ1
Lund-Katz, S; Mahley, RW; Phillips, MC; Weisgraber, KH1
Aswad, DW; Henzel, WJ; Potter, SM1
Holden, HM; Rayment, I; Rypniewski, WR1
Rayment, I; White, HD1
Steinbrecher, UP; Yang, Y; Zhang, H1
Waterborg, JH2
Dunten, RL; Kaback, HR; Sahin-Tóth, M1
Cavallius, J; Chakraburtty, K; Merrick, WC; Zoll, W1
Hofmann, KP; Jäger, S; Palczewski, K1
Kneale, GG; Taylor, IA; Webb, M1
Bobkov, AA; Dedova, IV; Golitsina, NL; Levitsky, DI; Nikolaeva, OP; Orlov, VN; Pavlov, DA1
Falick, AM; Nadeau, OW; Woodworth, RC1
Sherman, F; Takakura, H; Yamamoto, T1
Cavallius, J; Merrick, WC; Popkie, AP1
Morrice, NA; Raliegh, J; Wettenhall, RE; Williamson, NA1
Annila, A; Kovanen, PT; Oörni, K; Pentikäinen, MO1
Hansson, H; Härd, T; Knapp, S; Ladenstein, R; Lundbäck, T1
Dumont, ME; Mauk, AG; Pollock, WB; Rosell, FI; Twitchett, MB1
Hayamizu, T; Kudoh, S; Nakamura, H1
Kobayashi, M; Kubota, M; Matsuura, Y1
Bairoch, A; Binz, PA; Gasteiger, E; Gooley, AA; Herbert, BR; Hochstrasser, DF; Molloy, MP; Ou, K; Sanchez, JC; Wilkins, MR; Williams, KL1
Monnier, VM; Obrenovich, M; Saxena, AK; Saxena, P; Weiss, MF; Wu, X1
Inoue, F; Kinugasa, A; Kizaki, Z; Nakajima, H; Okochi, M; Sawada, T; Terada, N1
Allis, CD; Cook, RG; Ohba, R; Strahl, BD1
Cobb, JA; Roberts, DM1
Das, B; Martzen, MR; Phizicky, EM; Polevoda, B; Sherman, F1
Bredesen, D; Ellerby, HM; Ellerby, LM; Kluck, RM; Margoliash, E; Mauk, AG; Naiem, S; Newmeyer, DD; Sherman, F; Yaffe, MP1
Lamkin, MS; Oppenheim, FG; Yao, Y1
Allis, CD; Eisenhaber, F; Jenuwein, T; Mechtler, K; O'Carroll, D; Opravil, S; Ponting, CP; Rea, S; Schmid, M; Strahl, BD; Sun, ZW1
Irvin, JD; Kurinov, IV; Mao, C; Uckun, FM1
Jenuwein, T; Lachner, M; Mechtler, K; O'Carroll, D; Rea, S1
Allshire, RC; Bannister, AJ; Kouzarides, T; Miska, EA; Partridge, JF; Thomas, JO; Zegerman, P1
Trouche, D; Vandel, L1
Allis, CD; Grewal, SI; Nakayama , J; Rice, JC; Strahl, BD1
Berger, SL1
Fukushima, T; Shinkai, Y; Sugimoto, K; Tachibana, M1
Allis, CD; Rice, JC1
Taylor, IA; Webb, M1
Allis, CD; Briggs, SD; Erdjument-Bromage, H; Feng, Q; Huang, ZQ; Strahl, BD; Tempst, P; Wang, H; Wong, J; Xia, L; Zhang, Y1
Bannister, AJ; Bauer, UM; Cleary, M; Firestein, R; Herrera, RE; Jenuwein, T; Kouzarides, T; Morrison, A; Nielsen, SJ; O'Carroll, D; Schneider, R1
Allis, CD; Felsenfeld, G; Gaszner, M; Litt, MD; Simpson, M1
Allis, CD; Grewal, SI1
Becker, PB; Brehm, A; Czermin, B; Hülsmann, BB; Imhof, A; Reuter, G; Schotta, G1
Bird, A1
Allis, CD; Boggs, BA; Cheung, P; Chinault, AC; Heard, E; Spector, DL1
Brockdorff, N; Jenuwein, T; Mermoud, JE; O'Carroll, D; Pagani, M; Peters, AH; Schweizer, D1
Aasland, R; Pijnappel, WW; Roguev, A; Schaft, D; Shevchenko, A; Stewart, AF; Wilm, M1
Allis, CD; Aswad, DW; Baumann, CT; Hager, GL; Jelinek, MA; Li, H; Ma, H; Rice, R; Stallcup, MR; Strahl, BD1
Allis, CD; Briggs, SD; Bryk, M; Cheung, WL; Davie, JK; Dent, SY; Strahl, BD; Winston, F1
Cleary, ML; Griesenbeck, J; Kornberg, RD; Nagy, PL1
Borchers, C; Cao, R; Erdjument-Bromage, H; Tempst, P; Wang, H; Xia, L; Zhang, Y1
Dover, J; Greenblatt, JF; Johnston, M; Khorrami, S; Krogan, NJ; Schneider, J; Shilatifard, A1
Brockdorff, N; Jenuwein, T; Mermoud, JE; Peters, AH; Popova, B1
Canas, B; Kouzarides, T; Pappin, D; Zegerman, P1
Jacobs, SA; Khorasanizadeh, S1
Ayyanathan, K; Maul, GG; Negorev, D; Rauscher, FJ; Schultz, DC1
Bannister, AJ; Schneider, R1
Jenuwein, T; Lachner, M1
Aucott, R; Bongiorni, S; Burgoyne, PS; Cowell, IG; Fanti, L; Fundele, R; Gilbert, DM; Huskisson, N; Jeppesen, P; Mahadevaiah, SK; Morrison, H; Pimpinelli, S; Prantera, G; Shi, W; Singh, PB; Wu, R1
Dean, K; Dover, J; Johnston, M; Schneider, J; Shilatifard, A; Tawiah-Boateng, MA; Wood, A1
Colot, V; Gendrel, AV; Lippman, Z; Martienssen, RA; Yordan, C1
Erdjument-Bromage, H; Feng, Q; Ng, HH; Struhl, K; Tempst, P; Wang, H; Zhang, Y2
Dalgaard, JZ; Varga-Weisz, PD1
Allis, CD; Chuikov, S; Erdjument-Bromage, H; Lis, JT; Nishioka, K; Reinberg, D; Rice, JC; Sarma, K; Steward, R; Tempst, P; Valenzuela, P; Wang, Y; Werner, J1
Bannister, AJ; Kouzarides, T; Schneider, R1
Blankenship, JW; Burlingame, AL; Huang, L; Jones, PR; Tang, H; Xiang, F; Yau, PM; Zhang, K1
Fukuda, M; Kato, H; Niida, H; Nozaki, M; Ohki, M; Ohta, T; Shinkai, Y; Sugimoto, K; Tachibana, M; Takeda, N; Ueda, J1
Bifani, P; Debrie, AS; Drobecq, H; Locht, C; Menozzi, FD; Pethe, K; Sergheraert, C1
Helliger, W; Koutzamani, E; Lindner, HH; Rundquist, I; Sarg, B1
Ng, HH; Struhl, K; Xu, RM; Zhang, Y1
Grewal, SI; Hall, IM; Kidner, C; Martienssen, RA; Teng, G; Volpe, TA1
Allshire, R1
Grewal, SI; Noma, K1
Natoli, G; Saccani, S1
Allis, CD; Nishioka, K; Reinberg, D; Rice, JC; Sarma, K; Steward, R1
Allis, CD; Coyne, RS; Taverna, SD1
Cao, R; Erdjument-Bromage, H; Jones, RS; Tempst, P; Wang, H; Wang, L; Xia, L; Zhang, Y1
Bannister, AJ; Bernstein, BE; Emre, NC; Kouzarides, T; Mellor, J; Santos-Rosa, H; Schneider, R; Schreiber, SL; Sherriff, J1
Allshire, RC; Bannister, AJ; Kouzarides, T; Partridge, JF; Scott, KS1
Hirohashi, S; Koizume, S; Sekiya, T; Shiraishi, M; Tachibana, K1
Gonzales, FA; Jones, PA; Liang, G; Lin, JC; Nguyen, CT; Velicescu, M; Weisenberger, DJ1
Azorsa, DO; Barlev, NA; Berger, SL; Chow, VT; Goo, YH; Jung, DJ; Kang, MJ; Kim, DH; Kim, SW; Kwak, E; Lee, JW; Lee, KJ; Lee, YC; Meltzer, PS; Roeder, RG; Sohn, YC; Song, EJ; Suh, PG1
Issa, JP; Kondo, Y; Shen, L1
Aasland, R; Roguev, A; Schaft, D; Shevchenko, A; Stewart, AF1
Bauer, UM; Berger, S; Daujat, S; Kouzarides, T; Shah, V; Turner, B1
Case, CC; Gregory, PD; Pabo, CO; Snowden, AW1
Chang, JH; Cho, Y; Joachimiak, A; Kim, YC; Kwak, E; Kwon, T; Lee, CW; Lee, J1
Boateng, MA; Dean, K; Dover, J; Golshani, A; Greenblatt, JF; Heidt, J; Johnston, M; Krogan, NJ; Schneider, J; Shilatifard, A; Wood, A; Zhang, Y1
Farooq, A; Koch, AW; Manzur, KL; Plotnikova, O; Zeng, L; Zhou, MM1
Ciccone, DN; Morshead, KB; Ng, HH; Oettinger, MA; Struhl, K1
Marmorstein, R1
Nicolas, E; Roumillac, C; Trouche, D1
Kalkhoven, E; Martens, JH; Verlaan, M; Zantema, A1
Hirota, J; Satomi, Y; Takao, T; Yoshikawa, K1
Bresnick, EH; Choi, K; Feng, Q; Im, H; Johnson, KD; Kiekhaefer, CM; Park, C; Zhang, Y1
Cao, R; de la Cruz, CC; Fang, J; Mlynarczyk-Evans, SK; Otte, AP; Panning, B; Plath, K; Wang, H; Worringer, KA; Zhang, Y1
Boateng, MA; Dean, K; Dover, J; Golshani, A; Greenblatt, JF; Heidt, J; Johnston, M; Krogan, NJ; Ryan, OW; Schneider, J; Shilatifard, A; Wood, A1
Allis, CD; Cheng, X; Grewal, SI; McMillen, D; Nakayama, J; Selker, EU; Singh, PB; Tamaru, H; Zhang, X1
Bystrova, OV; Knirel, YA; Kocharova, NA; Macieja, Z; Rozalski, A; Shashkov, AS; Torzewska, A; Zatonsky, GV1
DiMario, PJ; Pellar, GJ1
Murthy, M; Neamati, N; Wang, YX1
Issa, JP; Kondo, Y1
Turner, BM2
Jenuwein, T; Lachner, M; O'Sullivan, RJ1
Bustin, M; Cedar, H; Hashimshony, T; Keshet, I; Zhang, J1
Bakala, H; Bismuth, J; Borot-Laloi, C; Corman, B; Delaval, E; Friguet, B; Hamelin, M1
Gerber, M; Shilatifard, A1
Beattie, BK; Boone, C; Buratowski, S; Cagney, G; Canadien, V; Emili, A; Golshani, A; Greenblatt, J; Kim, M; Krogan, NJ; Richards, DP; Shilatifard, A; Tong, A1
Kao, CF; Meehan, RR; Pennings, S1
Flynn, EM; Houtz, RL; Hurley, JH; Trievel, RC1
Boa, S; Coert, C; Patterton, HG1
Grewal, SI; Moazed, D; Motamedi, MR; Shankaranarayana, GD1
Bast, RC; Dent, SR; Fujii, S; Issa, JP; Kadota, M; Kondo, Y; Luo, RZ; Oshimura, M; Yu, Y; Yuan, J1
Dole, S; Ng, HH; Struhl, K1
Dover, J; Johnston, M; Schneider, J; Shilatifard, A; Wood, A1
Dutnall, RN1
Min, J; Xu, RM; Zhang, Y1
Allis, CD; Fischle, W; Jacobs, SA; Khorasanizadeh, S; Kim, Y; Wang, Y1
Brockdorff, N; Feil, R; Gomez, M; Goto, Y1
Farnham, PJ; Inman, DR; Oberley, MJ1
Hesman, T; Johnston, M; Landry, J; Min, J; Sternglanz, R; Sutton, A; Xu, RM1
Grigoryev, SA; Istomina, NE; Karpov, VL; Krasheninnikov, IA; Shushanov, SS; Singh, PB; Springhetti, EM; Stevens, K; Zaret, KS1
Cocklin, RR; Wang, M1
Byrd, KN; Shearn, A1
ALLFREY, VG; FAULKNER, R; MIRSKY, AE1
KAVERZNEVA, ED; KLEOPINA, GV; KRAVCHENKO, NA1
Allis, CD; Ciccone, DN; Morshead, KB; Oettinger, MA; Taverna, SD1
Bonifer, C; Follows, GA; Lefevre, P; Morgan, GJ; Tagoh, H1
An, W; Cao, R; Chatton, B; Erdjument-Bromage, H; Roeder, RG; Tempst, P; Wang, H; Xia, L; Zhang, Y1
Avner, P; Navarro, P; Rougeulle, C1
Nishioka, K; Reinberg, D; Sims, RJ1
Canaani, E; Cherbas, L; Cherbas, P; Cho, E; Jaynes, JB; Jones, RS; Mazo, A; Petruk, S; Sedkov, Y; Smith, ST1
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Hayakawa, T; Hiratani, I; Kuriya, K; Ogata, M; Ogata, S; Okano, M; Okumura, K; Ryba, T; Sakaue, M; Takahashi, S; Takebayashi, SI; Wimbish, K1
Allis, CD; Chen, H; Chen, X; Lu, C; Majewski, J; Rajagopalan, KN; Weinberg, DN1
Chachar, S; Geng, Y; Gu, X; Guo, W; Liu, Q; Riaz, A; Wang, Y; Wu, C; Yan, S; Yang, L; Yang, Y; Yi, K; Zhang, P; Zhu, C1
Angrisano, T; Cozzolino, F; Iacobucci, I; Monaco, V; Monti, M1
Li, Z; Qin, H; Wang, K; Wang, Q; Wang, Y; Ye, M; Zhou, J1
Damle, M; Kim, J; Kingston, RE; Miller, SA1
Gabrielsen, OS; Myklebost, O; Røhr, ÅK; Stabell, M; Sæther, T1
Jeon, M; Kim, H; Lee, JM; Park, IG1
Irwin, B; Kueh, HY; Ng, KKH; Nguyen, PHB; Pease, NA; Vaughan, JC; Woodworth, MA1
Davidovich, C; Zhang, Q1
Dong, J; Jacob, Y; Joly, V; LeBlanc, C; Mendez, J; Mermaz, B; Poulet, A; Villarino, G; Voigt, P; Webb, KM1
Coradin, M; Garcia, BA; Janssen, KA; Lu, C; Sidoli, S1
Diaz, K; Huang, R; Meng, Y1
Engelberg, IA; Foley, CA; Frye, SV; James, LI1
Cao, D; Ding, H; Hou, J; Huang, B; Lin, C; Liu, J; Liu, L; Liu, X; Liu, Y; Lu, J; Wang, G; Zhang, N; Zhang, X; Zhang, Y1
Debnath, A; Hardy, DB; Holloway, AC; Raez-Villanueva, S1
Berthelet, J; Calegari-Silva, T; Cheeseman, K; Hamroune, J; Jannot, G; Letourneur, F; Lourenço, N; Rodrigues-Lima, F; Villares, M; Weitzman, JB1
Davidovich, C; Uckelmann, M1
Azarcon, P; Bia, R; Davis, K; Franklin, S; Hickenlooper, S; Horiuchi, E; Szulik, MW1
Fisher, RP; Pagé, V; Pinto, D; Tanny, JC1
Ban, T; Chen, L; Du, J; Duan, CG; Guo, Z; Kim, C; Lang, Z; Niu, Q; Song, Z; Tang, K; Wang, L; Zhang, H; Zhu, JK1
Anguera, MC; Buckner, JH; Cancro, MP; Knox, JJ; Paneru, B; Posso, S; Pyfrom, S1
Altmann, S; Bäurle, I; Brzezinka, K; Friedrich, T; Gorka, M; Graf, A; Kappel, C; Lämke, J; Oberkofler, V; Skirycz, A; Sokolowska, E; Trindade, I1
Hintzen, JCJ; Jian, J; Luo, Y; Mecinović, J; Porzberg, MRB; Proietti, G; White, PB1
Aoki, F; Funaya, S; Kawamura, M; Sugie, K; Suzuki, MG1
Burke, TP; Engström, P; Iavarone, AT; Tran, CJ; Welch, MD1
Iida, H; Iwamori, N; Iwamori, T; Kaneko, T; Wang, Y1
Chen, X; Cheng, P; Feng, X; Guang, S; Huang, X; Weng, C; Xu, Z; Zeng, C; Zhu, C1
Crowley, PB; Frizzell, L; Lowndes, NF; Luessing, J; Maretto, S; Ramberg, KO; Sakhteh, M; Sarai, N; Tsanov, N1
Bichmann, M; Ehrnhoefer, DE; Ercan-Herbst, E; Gasparini, L; Gomez Ramos, B; Haberkant, P; Hu, C; Jin, L; Neu, M; Prat Oriol, N; Ried, JS; Schlüter, A; Schöndorf, DC; Schwärzler, V; Tian, Y; Wang, X1
An, JY; Bak, MS; Chae, YC; Chun, YS; Kim, A; Kim, SJ; Kim, Y; Kim, YG; Kim, YL; Lee, YS; Seo, SB1
Separovich, RJ; Wilkins, MR1
Bao, L; Chen, J; Diao, L; Feng, W; Li, M; Pan, X; Wang, S; Xie, X; Zhang, X; Zou, W1
Baughn, LB; Duan, Z; Gupta, V; MacCarthy, T; Scharff, MD; Wang, X; Yu, G; Zhang, Y1
Anderson, KC; Durbin, AD; Gryder, BE; Hideshima, T; Hino, S; Johansson, C; Kawano, Y; Khan, J; Kim, Y; Kurata, K; Lauberth, S; Li, D; Masuda, T; Matsuoka, M; Minami, T; Munshi, NC; Nakao, M; Ogiya, D; Ohguchi, H; Ohtsuki, S; Oppermann, U; Park, PMC; Pei, C; Qi, J; Samur, MK; Tai, YT; Usuki, S; Wang, T; Wimalasena, VK; Zhang, X1
Andrieux, A; Sadoul, K1
Dong, A; Liu, Y; Loppnau, P; Min, J; Yan, X; Yang, Y; Zhang, M; Zhou, M1
Engist, B; Erikson, G; Genoud, C; Jenuwein, T; Meyer, AG; Mittler, G; Montavon, T; Musa, Y; Onishi-Seebacher, M; Ryan, D; Shukeir, N1
Lan, HC; Lin, YR; Liu, YY; Shen, CC; Yang, WM; Yao, YL1
Ahmad, K; Henikoff, S1
Shi, X; Wen, H; Yu, Y1
Huang, P; Li, W; Lin, L; Peng, Y; Xu, J; Yan, Y; Ye, H; Zhang, H; Zhang, R; Zheng, Z1
Cao, X; Chai, Y; Ding, Y; Hu, Y; Shen, Z; Song, J; Wang, B; Wang, C; Wang, X; Wu, J; Xu, J; Xu, X; Zhao, Y1
Arita, K; Funyu, T; Kanemaru, Y; Onoda, H1
Gao, F; Li, D; Qin, Y; Xu, L; Xu, W; Yang, Y; Yu, X; Zhao, S1
Anderson, J; Cantilena, S; de Boer, J; Hargrave, D; Meier, S; Michod, D; Niklison Chirou, MV; Salomoni, P1
Chen, L; Deng, X; Gao, F; Li, B; Li, L; Li, X; Liang, T; Pan, Y; Ren, Y; Wang, J; Yang, D; Yang, Y; Zhai, S; Zhang, S; Zhang, X; Zhao, J; Zheng, Y; Zhou, P1
Barnash, KD; Budziszewski, GR; Chiarella, AM; Cholensky, SH; Clinkscales, SE; Hathaway, NA; Herring, LE; James, LI; McGinty, RK; Norris-Drouin, JL; Pearce, KH; Rectenwald, JM; Waybright, JM1
Chen, Q; Einarsson, H; Ekwall, K; Frederiksen, KS; Lerdrup, M; Liu, CF; Nair, N; Nordenskiöld, L; Prasanna, C; Shi, X; Shoaib, M; Svensson, JP; Sørensen, CS; Walter, D; Yang, R1
Goda, T; Honma, K; Machida, C; Mochizuki, K1
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Bilmez, Y; Ozturk, S; Talibova, G1
Dokholyan, NV; Kutateladze, TG; Vann, KR; Vishweshwaraiah, YL1
Acheampong, A; Chen, Z; Huang, Q; Li, L1
Ji, T; Liu, A; Mao, X; Weng, Y1
Bu, G; Chen, L; Chen, ZX; Dou, C; He, H; Li, Z; Liu, X; Liu, Z; Miao, YL; Wang, T; Wu, D; Xu, T; Yin, S; Yu, L; Zhang, J; Zhang, X; Zhou, J; Zhu, W1
Bayer, P; Hof, F; Isaacs, L; Kamba, BE; Le, MH; Schrader, T; Warmerdam, Z1
Baabe, D; Bröring, M; Burghaus, O; Gutsmann, T; Hurwitz, R; Kolbe, M; Nehls, C; Wang, C1
Baldensperger, T; Dau, T; Di Sanzo, S; Glomb, MA; Heller, R; Henning, C; Kirkpatrick, JM; Leheis, A; Marx, C; Ori, A; Parca, L; Rändler, TL; Spengler, K; Wang, ZQ1
Fahrenkrog, B; Vaz, M1
Chen, L; Jiang, W; Zheng, S1
Adriaenssens, E; Angrand, PO; Cicero, J; Hasanpour, S; Le Bourhis, X; Raby, L; Toillon, RA; Van Seuningen, I; Völkel, P1
Lee, JM; Park, SC1
Gao, L; Li, Q; Song, P; Yu, W1
Li, L; Ma, C; Zhao, J; Zou, G; Zou, Y1
Gocek, N; Laskowski, T; Polit, JT; Szczeblewski, P; Winnicki, K; Żabka, A1
Iimura, T; Ikedo, A; Imai, Y; Inoue, K; Lee, JW; Xia, Y1
Chen, ES; Lam, UTF1
Diao, H; Hao, N; Koropatnick, J; Liu, Q; Maleki Vareki, S; Min, J; Min, W; Raphael, J; Sang, Y; Wang, Z; Xiong, J; Xu, D; Zhang, Y; Zheng, X1
Garcia, BA; Kori, Y; Lund, PJ; Noh, KM; Sidoli, S; Trovato, M; Yuan, ZF1
Li, F; Liu, Y; Min, J; Qin, S; Wei, Z; Yan, X; Yang, X; Yang, Y; Zhang, M; Zhou, M1
Geil, CN; Lee, TH; Li, D; McGinty, RK; Smith, CB; Spangler, CJ; Wang, GG; Yadav, SP1
Luco, RF; Núñez-Álvarez, Y; Oldfield, AJ; Segelle, A; Voigt, P; Webb, KM1
Aljazi, MB; Gao, Y; He, J; Wu, Y1
Amatori, S; Auber, LA; Cantatore, F; Casciaro, F; Fanelli, M; Giorgio, M; Perna, A; Persico, G; Rusin, M1
Didonna, A; Ma, Q; Matsunaga, A; Mofrad, MRK; Shams, H1
Abbasi, Y; Anbiyaee, O; Farzaneh, M; Ghaedrahmati, F; Gholami, E; Kuchaki, Z; Meybodi, SM; Rashid Sheykhahmad, F1
Alarcon, EI; Arvanitis-Vigneault, A; Brunzelle, JS; Couture, JF; Davarinejad, H; Dong, J; Huang, YC; Jacob, Y; Joly, V; LeBlanc, C; Mermaz, B; Muñoz, M; Poulet, A; Ross, A; Rotstein, BH; Thomson, G; Valsakumar, D; Villarino, G; Voigt, P1
Biggar, KK; Chopra, A; Hoekstra, M; Willmore, WG1
Baudre, L; Baulande, S; Bento, ST; Bohec, M; Dahmani, A; Durand, A; Eisele, A; Foulon, S; Grosselin, K; Landragin, C; Letouzé, E; Lyne, AM; Marangoni, E; Marsolier, J; Perié, L; Prompsy, P; Salomon, AV; Sourd, L; Trouchet, A; Vallot, C1
Magnuson, T; Menon, DU; Mu, W; Murcia, NS; Smith, KN; Yee, D1
Deng, H; Guo, H; Qian, P; Rahman, A; Xu, XL; Zhao, YY1
Chen, X; Deng, H; Jia, S; Liao, Q; Liu, X; Ouyang, G; Sun, X; Tang, J; Wang, Z; Xiao, W; Zha, H; Zhu, C1
Huang, L; Long, H; Shi, L; Song, A; Zhou, Z1
Gabellini, D; Pedrotti, S1
Boettiger, AN; Cech, TR; Chang, HY; Corces, MR; Granja, JM; Kraft, K; Long, Y; Magg, A; Mundlos, S; Murphy, SE; Wittler, L; Yost, KE1
Kawano, F; Shimizu, J1
Bonasio, R; Scacchetti, A1
Al Ojaimi, M; Almannai, M; Banimortada, BJ; El-Hattab, AW; Othman, A; Riedhammer, KM1
Erlendson, AA; Freitag, M1
Jeltsch, A; Weirich, S2
Barghout, SH; Barsyte-Lovejoy, D; Machado, RAC1
Bloskie, T; Storey, KB1
Ali, SD; Chong, KT; Tayara, H1
Cao, YC; Duan, JY; Guo, B; Lei, LM; Li, CC; Li, FX; Liao, XB; Lin, X; Ou-Yang, WL; Shan, SK; Tang, KX; Ullah, MHE; Wang, Y; Wu, F; Wu, YY; Xu, F; Xu, QS; Yuan, LQ; Zheng, MH; Zhou, ZA1
Diao, W; Li, Y; Wang, J; Xu, S; Zheng, J1
Hua, J; Li, N; Peng, S; Shen, Q; Wu, X; Yang, F; Yu, S; Zhang, J; Zhang, R; Zhang, S; Zhao, W1
Azorín, F; Bernués, J; Bonet-Costa, C; Castejón, L; Climent-Cantó, P; Fernández-Castañer, E; Guerrero-Pepinosa, N; Izquierdo-Boulstridge, A; Leal, N; Reina, O; Vujatovic, O1
Caswell, SJ; Clarkson, PN; Edwardes, LV; Giurrandino, M; Gohlke, A; Hamm, GR; Jervis, KV; Kostomiris, DH; Pflug, A; Pollard, HK; Syson, K; Zhai, X1
Balasubramaniam, M; Burge, N; Christensen, D; Cox, K; Craigie, R; Dash, C; Kvaratskhelia, M; Li, M; Linderberger, J; Pandhare, J; Poirier, MG; Prakash, P; Sapp, N; Thapa, S1
Benamrouz-Vanneste, S; Certad, G; Chabe, M; Creusy, C; Duval, E; Even, G; Gantois, N; Guyot, K; Meloni, D; Sawant, M; Viscogliosi, E; Weitzman, JB; Wintjens, R1
Lou, K; Xu, X; Xu, Y; Zhang, Y; Zheng, B1
Han, B; Liang, C; Wang, JL; Xie, RJ; Yang, Q; Zhang, JY; Zhang, YW1
Chen, D; Chen, X; Feng, X; Guang, S; Hong, M; Hou, X; Huang, M; Zhu, C1
Blanco-Esperguez, K; Kästner, J; Mendizábal, F; Miranda-Rojas, S; Tuñón, I1
Khandelwal, M; Kumar Rout, R; Li, A; Mallik, S; Umer, S1
Guo, P; Hoang, N; Rajawasam, K; Sanchez, J; Sun, H; Trinidad, K; Zhang, EH; Zhang, H1
Baubec, T; Chen, C; Gu, J; Krone, MW; Martyn, GD; Pearce, KH; Sidhu, SS; Tang, JQ; Veggiani, G; Villaseñor, R; Waters, ML1
Chin, HG; Estève, PO; Pradhan, S; Ruse, C; Sen, S; Vishnu, US1
Ding, X; Duan, X; Jiang, G; Jiang, Y; Liang, H; Liu, X; Song, L; Sun, J; Xiao, L1
Deng, H; Guo, H; Ma, Y; Qian, P; Rahman, A; Shaik, F; Wang, CM; Wang, KN; Xu, XL; Zhao, YY1
Bedford, MT; Chen, Q; Cheng, X; Horton, JR; Zhang, X; Zhou, J1
Pearson, JT1
Berryhill, CA; Cordeiro-Spinetti, E; Cornett, EM; Dickson, BM; Doud, EH; Hanquier, JN; Mosley, AL; Rothbart, SB1
Li, Z; Wang, J; Wang, Y; Zhang, Y1
Heinemann, U; Panáková, D; Petrović, S; Phan, MHQ; Rami, B; Roske, Y1
Berr, A; Carles, CC; Chabouté, ME; Faigenboim, A; Fal, K; Ishkhneli, N; Le Masson, M; Moyal, NL; Pano, E; Tomkova, D; Villette, C; Williams, LE1
Bao, X; Dang, S; Jing, Y; Lam, WH; Li, XD; Lin, J; Liu, Z; Tian, G; Wong, JWH; Wu, Y; Yang, E; Yu, D; Zhai, Y1
Bonaldi, T; Cuomo, A; Ehrenhofer-Murray, AE; Kshirsagar, R; Munhoven, A; Samel-Pommerencke, A; Tran Nguyen, TM1
Cho, JY; Kim, JH; Sutopo, NC1
Alkafri, N; Bissardon, C; Bohic, S; Charlet, L; Conlan, RS; Francis, LW; Gazze, S; Gonzalez, D; Gourlan, AT; James, DW; Knodel, F; Proux, O; Quintela, M; Rathert, P; Toubhans, B1
Cai, X; Dong, A; Su, W; Wang, F; Wei, H; Zhang, L1
An, M; Hoffman, BG; Luciani, DS; Lynn, FC; Maeshima, N; McDonald, CL; Pasula, DJ; Suresh, P; Vanderkruk, B1
Fujimori, DG; Kutateladze, TG; Ortiz, G1
Berryhill, CA; Cornett, EM; Hanquier, JN; Hudmon, A; Sahoo, FK; Sanders, K; Vilseck, JZ1
Bengtsen, M; Davydova, E; Falnes, PØ; Herrera, MC; Małecki, JM1
Cai, R; Chen, Y; Ge, K; Li, T; Li, Y1
Angulo Ibanez, M; Cho, J; Chua, K; Francis, JW; Gozani, O; Hausmann, S; Jeong, J; Liu, S; Mazur, PK; Mealey-Farr, R; Park, J1
Cao, Y; Chang, Y; Li, M; Li, Z; Qing, G; Xiong, Y; Zhao, X1
Bashtrykov, P; Bröhm, A; Bui, T; Jeltsch, A; Khella, MS; Pleiss, J; Schnee, P; Weirich, S1
Larsson, J; Lindehell, H; Schwartz, YB1
Dohmae, N; Fukuda, K; Hiratani, I; Ikeda, K; Inoue, A; Kimura, H; Miura, H; Okada, Y; Okayama, S; Ono, T; Onoue, K; Shimi, T; Shimura, C; Shinkai, Y; Suzuki, T; Yonemura, S1
Francis, JW; Gozani, O; Lu, J; Narkhede, P; Shao, Z; Song, J; Trinh, AT1
Batbayar, G; Horike, SI; Ishimura, A; Lyu, H; Meguro-Horike, M; Suzuki, T; Takino, T; Terashima, M; Wanna-Udom, S1
Li, X; Li, XD; Liu, S1
Chen, Y; Gao, L; He, Y; Kong, X; Li, G; Li, Q; Li, Y; Liu, Y; Long, Q; Pu, P; Tong, S; Yang, Y; Zhang, J1
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Bai, R; Deng, J; Han, B; Li, Q; Sun, Q; Xin, T; Zhang, Y; Zhuang, Z1
Dalpatraj, N; Naik, A; Thakur, N1
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Fraser, OA; Namitz, KEW; Showalter, SA1
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Cordeiro-Spinetti, E; Rothbart, SB1

Reviews

221 review(s) available for lysine and isomethyleugenol

ArticleYear
Biological significance of methylated derivatives of lysine and arginine.
    Life sciences, 1977, Feb-01, Volume: 20, Issue:3

    Topics: Animals; Arginine; Blood Pressure; Cell Division; Cytochrome c Group; Histones; Lysine; Methylation; Muscle Proteins; Neoplasms, Experimental; Proteins; Structure-Activity Relationship

1977
Mapping of contact areas in protein-nucleic acid and protein-protein complexes by differential chemical modification.
    Methods of biochemical analysis, 1979, Volume: 25

    Topics: Acetylation; Amino Acids; Amino Acyl-tRNA Synthetases; Binding Sites; Chemical Phenomena; Chemistry; Cytochrome c Group; Electron Transport Complex IV; Isotope Labeling; Lysine; Macromolecular Substances; Methylation; Molecular Conformation; Nucleic Acids; Oxidation-Reduction; Protein Denaturation; Proteins; Purines; RNA, Transfer; Structure-Activity Relationship

1979
RNA fractionation on Kieselguhr columns.
    Journal of chromatography, 1972, Aug-23, Volume: 70, Issue:2

    Topics: Amphibians; Animals; Arginine; Birds; Chromatography; Histones; Insecta; Lysine; Mammals; Methylation; Ornithine; Peptides; Plants; Polynucleotides; Protamines; RNA; RNA, Bacterial; RNA, Messenger; RNA, Ribosomal; RNA, Transfer; RNA, Viral; Saccharomyces; Sea Urchins; Serum Albumin; Serum Albumin, Bovine; Silicon Dioxide

1972
Chromosomal proteins.
    International review of cytology, 1974, Volume: Suppl 4

    Topics: Acetylation; Amino Acid Sequence; Animals; Arginine; Chromatin; Chromosomes; DNA; Electrophoresis, Polyacrylamide Gel; Histones; Hormones; Lysine; Magnetic Resonance Spectroscopy; Methylation; Nucleoproteins; Oxidative Phosphorylation; Protein Binding; RNA; Species Specificity; Transcription, Genetic

1974
Histones: structure and function.
    Annual review of biochemistry, 1971, Volume: 40

    Topics: Acetates; Acylation; Amino Acid Sequence; Animals; Arginine; Cattle; Chemical Phenomena; Chemistry; Chromatin; Cysteine; Cystine; DNA; Female; Histidine; Histones; Lysine; Male; Methylation; Molecular Weight; Oxidation-Reduction; Phosphoproteins; Phosphoric Acids; Protein Binding; Protein Conformation; RNA; Serine; Thymus Gland

1971
Histone methylation versus histone acetylation: new insights into epigenetic regulation.
    Current opinion in cell biology, 2001, Volume: 13, Issue:3

    Topics: Acetylation; Animals; Chromobox Protein Homolog 5; Chromosomal Proteins, Non-Histone; DNA Methylation; Gene Expression Regulation, Developmental; Gene Silencing; Heterochromatin; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation; Methyltransferases; Neoplasms; Protein Methyltransferases; Transcription, Genetic

2001
The many faces of histone lysine methylation.
    Current opinion in cell biology, 2002, Volume: 14, Issue:3

    Topics: Animals; Chromatin; DNA Methylation; Gene Silencing; Histone-Lysine N-Methyltransferase; Histones; Lysine; Methylation; Models, Genetic; RNA; X Chromosome

2002
Histone methylation: dynamic or static?
    Cell, 2002, Jun-28, Volume: 109, Issue:7

    Topics: Amino Acid Sequence; Animals; Arginine; Gene Expression Regulation; Histones; Lysine; Methylation; Molecular Sequence Data

2002
Structure of SET domain proteins: a new twist on histone methylation.
    Trends in biochemical sciences, 2003, Volume: 28, Issue:2

    Topics: Amino Acid Sequence; Animals; Binding Sites; Coenzymes; Conserved Sequence; Histones; Humans; Lysine; Methylation; Methyltransferases; Models, Molecular; Molecular Sequence Data; Protein Structure, Secondary; Protein Structure, Tertiary; Sequence Alignment; Substrate Specificity

2003
Preparation of DNA-protein complexes suitable for spectroscopic analysis.
    Methods in molecular medicine, 2003, Volume: 85

    Topics: Aldehydes; Cross-Linking Reagents; DNA; DNA-Binding Proteins; Electrophoretic Mobility Shift Assay; Guanine; Lysine; Macromolecular Substances; Methylation; Models, Molecular; Nuclear Magnetic Resonance, Biomolecular; Nucleoproteins; Oxidation-Reduction; Photochemistry; Plant Proteins; Protein Conformation; Ribosome Inactivating Proteins, Type 2; Schiff Bases; Spectrometry, Fluorescence

2003
Memorable transcription.
    Nature cell biology, 2003, Volume: 5, Issue:5

    Topics: DNA Polymerase III; DNA-Binding Proteins; Gene Expression Regulation, Fungal; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Histones; Lysine; Methylation; Methyltransferases; Protein Methyltransferases; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins; Transcription Factors; Transcriptional Activation

2003
An epigenetic road map for histone lysine methylation.
    Journal of cell science, 2003, Jun-01, Volume: 116, Issue:Pt 11

    Topics: Animals; Epigenesis, Genetic; Histones; Lysine; Methylation

2003
Transcriptional elongation by RNA polymerase II and histone methylation.
    The Journal of biological chemistry, 2003, Jul-18, Volume: 278, Issue:29

    Topics: Animals; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Histones; Lysine; Methylation; Methyltransferases; Models, Biological; Protein Methyltransferases; RNA Polymerase II; RNA, Messenger; Transcription, Genetic; Transcriptional Elongation Factors

2003
Cracking the histone code: one, two, three methyls, you're out!
    Molecular cell, 2003, Volume: 12, Issue:1

    Topics: Amino Acid Sequence; Animals; Catalytic Domain; Cell Nucleus; Eukaryotic Cells; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Macromolecular Substances; Methylation; Methyltransferases; Protein Methyltransferases

2003
Histone lysine methylation: a signature for chromatin function.
    Trends in genetics : TIG, 2003, Volume: 19, Issue:11

    Topics: Animals; Chromatin; Dosage Compensation, Genetic; Heterochromatin; Histones; Humans; Lysine; Methylation; Protein Methyltransferases; Protein Processing, Post-Translational; Protein Structure, Tertiary; X Chromosome

2003
Generation and characterization of methyl-lysine histone antibodies.
    Methods in enzymology, 2004, Volume: 376

    Topics: Amino Acid Sequence; Animals; Antibodies; Enzyme-Linked Immunosorbent Assay; Fluorescent Antibody Technique; Heterochromatin; Histone-Lysine N-Methyltransferase; Histones; Immunoblotting; Lysine; Methylation; Mice; Quality Control; Rabbits

2004
Tips in analyzing antibodies directed against specific histone tail modifications.
    Methods in enzymology, 2004, Volume: 376

    Topics: Amino Acid Sequence; Animals; Antibodies; Antibody Specificity; Blotting, Western; Enzyme-Linked Immunosorbent Assay; Fluorescent Antibody Technique; Histones; Humans; Immunoblotting; Lysine; Male; Methylation; Mice; Molecular Sequence Data

2004
Histone methylation: recognizing the methyl mark.
    Methods in enzymology, 2004, Volume: 376

    Topics: Animals; Antibody Affinity; Antibody Specificity; Arginine; Blotting, Western; Chromatin; Enzyme-Linked Immunosorbent Assay; Fluorescent Antibody Technique; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Histones; Lysine; Methylation; Molecular Structure; Peptides; Polymerase Chain Reaction; Precipitin Tests; Protein Methyltransferases; Rabbits; Scintillation Counting

2004
The indexing potential of histone lysine methylation.
    Novartis Foundation symposium, 2004, Volume: 259

    Topics: Animals; Gene Silencing; Heterochromatin; Histones; Lysine; Mammals; Methylation; Methyltransferases; Polycomb-Group Proteins; Repressor Proteins

2004
The functions of E(Z)/EZH2-mediated methylation of lysine 27 in histone H3.
    Current opinion in genetics & development, 2004, Volume: 14, Issue:2

    Topics: Animals; Dosage Compensation, Genetic; Drosophila; Drosophila Proteins; Gene Expression Regulation; Gene Silencing; Histone-Lysine N-Methyltransferase; Histones; Homeodomain Proteins; Lysine; Methylation; Nuclear Proteins; Polycomb Repressive Complex 1; Polycomb Repressive Complex 2; Repressor Proteins

2004
Structure and function of histone methyltransferases.
    Critical reviews in eukaryotic gene expression, 2004, Volume: 14, Issue:3

    Topics: Animals; Arginine; Drosophila; Heterochromatin; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Humans; Lysine; Methylation; Models, Molecular; Phosphorylation; Protein Methyltransferases; Saccharomyces cerevisiae; Substrate Specificity

2004
Role of protein methylation in regulation of transcription.
    Endocrine reviews, 2005, Volume: 26, Issue:2

    Topics: Amino Acid Sequence; Animals; Arginine; Chromatin; Histones; Humans; Lysine; Methylation; Molecular Sequence Data; Protein Methyltransferases; Transcription, Genetic

2005
A crack in histone lysine methylation.
    Cell, 2004, Dec-29, Volume: 119, Issue:7

    Topics: Epigenesis, Genetic; Gene Silencing; Histones; Lysine; Methylation; Oxidoreductases, N-Demethylating

2004
[On the research of histone methylation].
    Yi chuan = Hereditas, 2004, Volume: 26, Issue:2

    Topics: Acetylation; Animals; DNA Methylation; Euchromatin; Gene Expression Regulation; Heterochromatin; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Histones; Lysine; Methylation; Phosphorylation; Protein Methyltransferases

2004
Epigenetic regulation by histone methylation and histone variants.
    Molecular endocrinology (Baltimore, Md.), 2005, Volume: 19, Issue:3

    Topics: Amino Acid Sequence; Animals; Chromatin; Chromosomes; Epigenesis, Genetic; Gene Expression Regulation; Gene Silencing; Heterochromatin; Histones; Humans; Lysine; Methylation; Molecular Sequence Data; Nucleosomes; Protein Processing, Post-Translational; Protein Structure, Tertiary

2005
Structural and sequence motifs of protein (histone) methylation enzymes.
    Annual review of biophysics and biomolecular structure, 2005, Volume: 34

    Topics: Amino Acid Motifs; Amino Acid Sequence; Animals; Arginine; Binding Sites; Chromatin; Crystallography, X-Ray; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Mass Spectrometry; Methylation; Models, Molecular; Molecular Sequence Data; Peptides; Phenylalanine; Protein Binding; Protein Structure, Tertiary; Proteins; Protons; Sequence Homology, Amino Acid; Tyrosine; Zinc

2005
An epigenetic code for DNA damage repair pathways?
    Biochemistry and cell biology = Biochimie et biologie cellulaire, 2005, Volume: 83, Issue:3

    Topics: Adenosine Diphosphate Ribose; Animals; Chromatin; Chromatin Immunoprecipitation; DNA; DNA Damage; DNA Repair; DNA Replication; Fungal Proteins; Histones; Humans; Lysine; Macromolecular Substances; Mass Spectrometry; Methylation; Phosphorylation; Recombination, Genetic; Ribose

2005
Effector proteins for methylated histones: an expanding family.
    Cell cycle (Georgetown, Tex.), 2005, Volume: 4, Issue:7

    Topics: Carrier Proteins; Chromobox Protein Homolog 5; Chromosomal Proteins, Non-Histone; DNA Helicases; DNA-Binding Proteins; Histones; Humans; Lysine; Membrane Proteins; Methylation

2005
Chromatin and the DNA damage response.
    DNA repair, 2005, Sep-28, Volume: 4, Issue:10

    Topics: Cell Cycle Proteins; Chromatin; Chromatin Assembly and Disassembly; DNA Damage; DNA Repair; Histones; Humans; Intracellular Signaling Peptides and Proteins; Lysine; Methylation; Phosphoproteins; Telomere; Yeasts

2005
Cross-talking histones: implications for the regulation of gene expression and DNA repair.
    Biochemistry and cell biology = Biochimie et biologie cellulaire, 2005, Volume: 83, Issue:4

    Topics: DNA Repair; Gene Expression Regulation; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins

2005
Steps toward understanding the inheritance of repressive methyl-lysine marks in histones.
    Cold Spring Harbor symposia on quantitative biology, 2004, Volume: 69

    Topics: Amino Acid Sequence; Animals; Drosophila; Drosophila Proteins; Epigenesis, Genetic; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Male; Methylation; Mice; Nuclear Proteins; Polycomb Repressive Complex 2; Prostatic Neoplasms; Protein Methyltransferases; Repressor Proteins; Sequence Homology, Amino Acid

2004
Reversing histone methylation.
    Nature, 2005, Aug-25, Volume: 436, Issue:7054

    Topics: Animals; Arginine; Chromatin; Histones; Humans; Lysine; Methylation

2005
Maintenance of open DNA base pairs through histone acetylated lysine-purine interaction leading to transcriptional activation: a proposed mechanism.
    International journal of molecular medicine, 2005, Volume: 16, Issue:5

    Topics: Acetylation; Base Pairing; DNA; Histones; Lysine; Methylation; Protein Processing, Post-Translational; Purines; Transcriptional Activation

2005
RNAi-directed assembly of heterochromatin in fission yeast.
    FEBS letters, 2005, Oct-31, Volume: 579, Issue:26

    Topics: Animals; Chromatin; Genome; Heterochromatin; Histone Deacetylases; Histones; Lysine; Methylation; Models, Biological; Models, Genetic; RNA; RNA Interference; RNA Polymerase II; RNA-Dependent RNA Polymerase; RNA, Double-Stranded; RNA, Small Interfering; Schizosaccharomyces

2005
The diverse functions of histone lysine methylation.
    Nature reviews. Molecular cell biology, 2005, Volume: 6, Issue:11

    Topics: Animals; Gene Silencing; Heterochromatin; Histone-Lysine N-Methyltransferase; Histones; Lysine; Methylation; Transcription, Genetic; Transcriptional Activation

2005
Lysine methylation and 'signaling memory'.
    Current opinion in immunology, 2006, Volume: 18, Issue:2

    Topics: Animals; Cell Nucleus; Cytosol; Humans; Immunologic Memory; Lysine; Methylation; Models, Immunological; Signal Transduction

2006
Chromatin modifications by methylation and ubiquitination: implications in the regulation of gene expression.
    Annual review of biochemistry, 2006, Volume: 75

    Topics: Amino Acid Sequence; Animals; Chromatin; Gene Expression Regulation; Gene Silencing; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation; Methyltransferases; Models, Molecular; Molecular Sequence Data; Myeloid-Lymphoid Leukemia Protein; Polycomb-Group Proteins; Protein Processing, Post-Translational; Repressor Proteins; RNA Interference; Saccharomyces cerevisiae Proteins; Ubiquitin; X Chromosome Inactivation

2006
Lysine methylation goes global.
    Cell cycle (Georgetown, Tex.), 2006, Volume: 5, Issue:12

    Topics: Animals; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation; Substrate Specificity; Tumor Suppressor Protein p53

2006
The control of histone lysine methylation in epigenetic regulation.
    Biochimie, 2007, Volume: 89, Issue:1

    Topics: Animals; Chromatin Assembly and Disassembly; Epigenesis, Genetic; Histones; Humans; Lysine; Methylation; Methyltransferases; Models, Genetic; Transcription, Genetic

2007
Histone H3 Lys 4 methylation: caught in a bind?
    Genes & development, 2006, Oct-15, Volume: 20, Issue:20

    Topics: Adenosine Triphosphate; Animals; Chromatin; Histones; Humans; Lysine; Methylation; Models, Biological; Models, Chemical; Models, Genetic; Protein Binding; Protein Structure, Tertiary; Transcription, Genetic

2006
Dynamic regulation of histone lysine methylation by demethylases.
    Molecular cell, 2007, Jan-12, Volume: 25, Issue:1

    Topics: Animals; Chromatin; Histones; Humans; Lysine; Methylation; Oxidoreductases, N-Demethylating; Protein Structure, Tertiary

2007
Methylation of lysine 4 on histone H3: intricacy of writing and reading a single epigenetic mark.
    Molecular cell, 2007, Jan-12, Volume: 25, Issue:1

    Topics: Amino Acid Sequence; Animals; Epigenesis, Genetic; Genes, Developmental; Histones; Homeodomain Proteins; Humans; Lysine; Methylation; Molecular Sequence Data

2007
Protein methylation and DNA repair.
    Mutation research, 2007, May-01, Volume: 618, Issue:1-2

    Topics: Animals; Arginine; Chromatin; DNA; DNA Damage; DNA Repair; Histones; Humans; Lysine; Methylation; Models, Biological; Phosphorylation; Protein Processing, Post-Translational; Protein Structure, Tertiary; Proteins

2007
Regulation of histone methylation by demethylimination and demethylation.
    Nature reviews. Molecular cell biology, 2007, Volume: 8, Issue:4

    Topics: Animals; Arginine; Histones; Humans; Hydrolases; Lysine; Methylation; Oxidoreductases, N-Demethylating; Protein Processing, Post-Translational; Protein Structure, Tertiary; Protein-Arginine Deiminase Type 4; Protein-Arginine Deiminases

2007
Structural dynamics of protein lysine methylation and demethylation.
    Mutation research, 2007, May-01, Volume: 618, Issue:1-2

    Topics: Animals; Chromatin Assembly and Disassembly; Histones; Humans; Lysine; Methylation; Models, Chemical; Models, Molecular; Molecular Conformation; Protein Conformation; Protein Structure, Secondary; Protein Structure, Tertiary; Substrate Specificity

2007
[Histone lysine methylation and epigenetics].
    Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme, 2006, Volume: 51, Issue:14 Suppl

    Topics: Animals; Cell Differentiation; Cell Division; DNA Methylation; Drosophila Proteins; Embryonic Development; Epigenesis, Genetic; Gene Expression Regulation, Developmental; Histones; Lysine; Methylation; Oxidoreductases, N-Demethylating; Polycomb Repressive Complex 1; RNA Interference; Transcription, Genetic

2006
A methylation rendezvous: reader meets writers.
    Developmental cell, 2007, Volume: 12, Issue:6

    Topics: Acetylation; Chromatin; Chromobox Protein Homolog 5; Chromosomal Proteins, Non-Histone; Gene Silencing; Histones; Humans; Lysine; Methylation; Transcription, Genetic

2007
[The roles of histone lysine methylation in epigenetic regulation].
    Yi chuan = Hereditas, 2007, Volume: 29, Issue:4

    Topics: Acetylation; Animals; DNA Methylation; Epigenesis, Genetic; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation; Protein Processing, Post-Translational; Transcription, Genetic

2007
The function and regulation of the JARID1 family of histone H3 lysine 4 demethylases: the Myc connection.
    Cell cycle (Georgetown, Tex.), 2007, Jun-01, Volume: 6, Issue:11

    Topics: Animals; Caenorhabditis elegans Proteins; Cell Transformation, Neoplastic; DNA-Binding Proteins; Drosophila melanogaster; Drosophila Proteins; Epigenesis, Genetic; Gene Expression Regulation; Histone Demethylases; Histone-Lysine N-Methyltransferase; Histones; Humans; Intracellular Signaling Peptides and Proteins; Jumonji Domain-Containing Histone Demethylases; Lysine; Mammals; Methylation; Mice; Mice, Knockout; Neoplasms; Nuclear Proteins; Nucleosomes; Oxidoreductases, N-Demethylating; Protein Processing, Post-Translational; Protein Structure, Tertiary; Proto-Oncogene Proteins c-myc; Repressor Proteins; Retinoblastoma-Binding Protein 2; Saccharomyces cerevisiae Proteins; Substrate Specificity; Tumor Suppressor Proteins

2007
Histone H3K4 demethylases are essential in development and differentiation.
    Biochemistry and cell biology = Biochimie et biologie cellulaire, 2007, Volume: 85, Issue:4

    Topics: Animals; Cell Differentiation; Histones; Humans; Intracellular Signaling Peptides and Proteins; Lysine; Methylation; Protein Isoforms; Retinoblastoma Protein; Retinoblastoma-Binding Protein 2; Tumor Suppressor Proteins

2007
Histone lysine demethylases: emerging roles in development, physiology and disease.
    Nature reviews. Genetics, 2007, Volume: 8, Issue:11

    Topics: Amino Acid Sequence; Animals; Gene Expression Regulation, Developmental; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation; Molecular Sequence Data; Neoplasms; Nervous System Diseases

2007
[Research progress on the relationship between nutrition and cancer epigenetics---histone modification mechanisms].
    Ai zheng = Aizheng = Chinese journal of cancer, 2007, Volume: 26, Issue:9

    Topics: Acetylation; Biotinylation; DNA, Neoplasm; Epigenesis, Genetic; Histones; Humans; Lysine; Methylation; Neoplasms; Nutritional Physiological Phenomena; Phosphorylation; Poly Adenosine Diphosphate Ribose

2007
Modular paths to 'decoding' and 'wiping' histone lysine methylation.
    Current opinion in chemical biology, 2007, Volume: 11, Issue:6

    Topics: Amino Acid Sequence; Chromatin; Epigenesis, Genetic; Histones; Lysine; Methylation; Models, Molecular; Molecular Sequence Data; Protein Conformation

2007
The emerging field of dynamic lysine methylation of non-histone proteins.
    Current opinion in genetics & development, 2008, Volume: 18, Issue:2

    Topics: Animals; Histones; Humans; Lysine; Methylation; Proteins

2008
Molecular implementation and physiological roles for histone H3 lysine 4 (H3K4) methylation.
    Current opinion in cell biology, 2008, Volume: 20, Issue:3

    Topics: Amino Acid Sequence; Animals; Chromatin; DNA-Binding Proteins; Epigenesis, Genetic; Gene Expression Regulation, Fungal; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Macromolecular Substances; Methylation; Protein Processing, Post-Translational; Saccharomyces cerevisiae Proteins; Transcription Factors

2008
Controlling histone methylation via trans-histone pathways.
    Epigenetics, 2008, Volume: 3, Issue:5

    Topics: Chromatin; Histones; Lysine; Methylation; Protein Processing, Post-Translational; Saccharomyces cerevisiae; Ubiquitination

2008
Epigenetic regulation in human brain-focus on histone lysine methylation.
    Biological psychiatry, 2009, Feb-01, Volume: 65, Issue:3

    Topics: Brain Chemistry; Gene Expression Regulation; Histones; Humans; Lysine; Mental Disorders; Methylation; RNA

2009
Dynamic protein methylation in chromatin biology.
    Cellular and molecular life sciences : CMLS, 2009, Volume: 66, Issue:3

    Topics: Animals; Arginine; Chromatin; DNA Damage; Embryonic Stem Cells; Epigenesis, Genetic; Gene Expression Regulation; Germ Cells; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Histones; Lysine; Methylation; Models, Molecular; Molecular Structure; Neoplasms; Oxidoreductases, N-Demethylating; Protein Conformation; Protein Methyltransferases; Protein Processing, Post-Translational; Tumor Suppressor Protein p53

2009
Epigenetics meets estrogen receptor: regulation of estrogen receptor by direct lysine methylation.
    Endocrine-related cancer, 2009, Volume: 16, Issue:2

    Topics: Epigenesis, Genetic; Estrogen Receptor alpha; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Humans; Lysine; Methylation

2009
The multiple facets of histone H4-lysine 20 methylation.
    Biochemistry and cell biology = Biochimie et biologie cellulaire, 2009, Volume: 87, Issue:1

    Topics: Amino Acid Sequence; Animals; Gene Expression Regulation; Histones; Humans; Lysine; Methylation; Molecular Sequence Data

2009
Characterization of human epigenomes.
    Current opinion in genetics & development, 2009, Volume: 19, Issue:2

    Topics: Acetylation; Epigenesis, Genetic; Genomics; Histones; Humans; Lysine; Methylation; Models, Biological

2009
Biochemical mechanisms of gene regulation by polycomb group protein complexes.
    Current opinion in genetics & development, 2009, Volume: 19, Issue:2

    Topics: Animals; Chromatin; Gene Expression Regulation; Histones; Lysine; Methylation; Models, Biological; Polycomb-Group Proteins; Protein Binding; Repressor Proteins; Transcription, Genetic

2009
Specificity of protein lysine methyltransferases and methods for detection of lysine methylation of non-histone proteins.
    Molecular bioSystems, 2008, Volume: 4, Issue:12

    Topics: Histone-Lysine N-Methyltransferase; Histones; Lysine; Methylation; Protein Processing, Post-Translational; Proteins; Sensitivity and Specificity

2008
Mechanisms of transcriptional repression by histone lysine methylation.
    The International journal of developmental biology, 2009, Volume: 53, Issue:2-3

    Topics: Animals; CpG Islands; Gene Expression Regulation; Histones; Humans; Lysine; Methylation; Models, Biological; Promoter Regions, Genetic; Transcription, Genetic

2009
Histone lysine methylation in genomic imprinting.
    Epigenetics, 2009, May-16, Volume: 4, Issue:4

    Topics: Animals; DNA (Cytosine-5-)-Methyltransferases; DNA Methylation; DNA Methyltransferase 3A; Epigenesis, Genetic; Female; Genomic Imprinting; Germ Cells; Histones; Lysine; Male; Methylation; Mice; Models, Genetic; Repressor Proteins

2009
Histone H3 lysine 4 di-methylation: a novel mark for transcriptional fidelity?
    Epigenetics, 2009, Jul-01, Volume: 4, Issue:5

    Topics: Acetylation; Animals; Histones; Humans; Lysine; Methylation; Promoter Regions, Genetic; Transcription, Genetic

2009
SET7/9 mediated methylation of non-histone proteins in mammalian cells.
    Epigenetics, 2009, Aug-16, Volume: 4, Issue:6

    Topics: Animals; DNA (Cytosine-5-)-Methyltransferase 1; DNA (Cytosine-5-)-Methyltransferases; Epigenesis, Genetic; Gene Expression Regulation; Histone-Lysine N-Methyltransferase; Humans; Lysine; Mammals; Methylation; Mice; Models, Genetic; Proteasome Endopeptidase Complex

2009
Histone H3 lysine 4 (H3K4) methylation in development and differentiation.
    Developmental biology, 2010, Mar-15, Volume: 339, Issue:2

    Topics: Animals; Cell Differentiation; Chromatin; Drosophila; Gene Expression Regulation, Developmental; Genes, Homeobox; Histones; Humans; Lysine; Methylation; Models, Biological; Nuclear Proteins

2010
H3K27me1 is E(z) in animals, but not in plants.
    Epigenetics, 2009, Aug-16, Volume: 4, Issue:6

    Topics: Animals; Arabidopsis; Arabidopsis Proteins; Epigenesis, Genetic; Gene Silencing; Histones; Lysine; Methylation; Methyltransferases; Models, Genetic; Protein Structure, Tertiary

2009
The future therapeutic potential of histone demethylases: A critical analysis.
    Current opinion in drug discovery & development, 2009, Volume: 12, Issue:5

    Topics: Animals; Dealkylation; Drug Design; Drug Discovery; Enzyme Inhibitors; Epigenesis, Genetic; Histone Demethylases; Histone-Lysine N-Methyltransferase; Histones; Humans; Jumonji Domain-Containing Histone Demethylases; Lysine; Methylation; Protein Processing, Post-Translational; Protein Stability; Substrate Specificity; Transcription, Genetic

2009
The emerging therapeutic potential of histone methyltransferase and demethylase inhibitors.
    ChemMedChem, 2009, Volume: 4, Issue:10

    Topics: Arginine; Enzyme Inhibitors; Histone Demethylases; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation; Neoplasms; Protein Processing, Post-Translational

2009
Histone modifications during DNA replication.
    Molecules and cells, 2009, Volume: 28, Issue:3

    Topics: Acetylation; Animals; Chromatin; DNA Repair; DNA Replication; Epigenesis, Genetic; Histones; Humans; Lysine; Methylation; Phosphorylation; Protein Processing, Post-Translational; Transcription, Genetic

2009
Promoting gene expression in plants by permissive histone lysine methylation.
    Plant signaling & behavior, 2009, Volume: 4, Issue:6

    Topics: Arabidopsis; Arabidopsis Proteins; Carotenoids; Chromatin; Epigenesis, Genetic; Flowers; Gene Expression Regulation, Plant; Histone-Lysine N-Methyltransferase; Histones; Lysine; Methylation; Pollen

2009
Structural basis for H3K4 trimethylation by yeast Set1/COMPASS.
    Advances in enzyme regulation, 2010, Volume: 50, Issue:1

    Topics: Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation; Models, Molecular; Protein Conformation; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins

2010
Coordinated chromatin control: structural and functional linkage of DNA and histone methylation.
    Biochemistry, 2010, Apr-13, Volume: 49, Issue:14

    Topics: Acetylation; Animals; Chromatin; DNA; DNA (Cytosine-5-)-Methyltransferases; DNA Methylation; Epigenesis, Genetic; Histone Demethylases; Histones; Lysine; Methylation

2010
Mixed lineage leukemia: a structure-function perspective of the MLL1 protein.
    The FEBS journal, 2010, Volume: 277, Issue:8

    Topics: Amino Acid Motifs; Amino Acid Sequence; Binding Sites; Crystallography, X-Ray; Forecasting; Histone-Lysine N-Methyltransferase; Histones; Humans; Leukemia; Ligands; Lysine; Methylation; Models, Biological; Models, Molecular; Molecular Sequence Data; Myeloid-Lymphoid Leukemia Protein; Protein Binding; Protein Conformation; Protein Structure, Tertiary; Structure-Activity Relationship

2010
Mixed lineage leukemia: histone H3 lysine 4 methyltransferases from yeast to human.
    The FEBS journal, 2010, Volume: 277, Issue:8

    Topics: Eukaryota; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation; Protein Processing, Post-Translational; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins; Schizosaccharomyces; Schizosaccharomyces pombe Proteins; Species Specificity

2010
Epigenetic regulation of development by histone lysine methylation.
    Heredity, 2010, Volume: 105, Issue:1

    Topics: Animals; Epigenesis, Genetic; Gene Expression Regulation, Developmental; Histones; Humans; Lysine; Methylation; Methyltransferases; Mice; Models, Biological; Trans-Activators

2010
Lysine methylation of nonhistone proteins is a way to regulate their stability and function.
    Biochemistry. Biokhimiia, 2010, Volume: 75, Issue:5

    Topics: Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Lysine; Methylation; Nuclear Proteins; Protein Stability; Ribosomal Proteins; Transcription Factors; Transcriptional Elongation Factors

2010
[Research progress in modification of histone lysine methylation and congenital heart defect].
    Yi chuan = Hereditas, 2010, Volume: 32, Issue:7

    Topics: Epigenesis, Genetic; Heart Defects, Congenital; Histones; Humans; Lysine; Methylation

2010
Decoding the histone H4 lysine 20 methylation mark.
    Critical reviews in biochemistry and molecular biology, 2010, Volume: 45, Issue:5

    Topics: Animals; DNA Replication; Histone Code; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation; Models, Biological; Protein Processing, Post-Translational; Transcription, Genetic

2010
Reading, writing and editing methylated lysines on histone tails: new insights from recent structural studies.
    Current opinion in structural biology, 2010, Volume: 20, Issue:6

    Topics: Animals; Epistasis, Genetic; Histones; Humans; Jumonji Domain-Containing Histone Demethylases; Lysine; Methylation

2010
Structural insights into histone lysine demethylation.
    Current opinion in structural biology, 2010, Volume: 20, Issue:6

    Topics: Animals; Epistasis, Genetic; Histone Demethylases; Histones; Humans; Jumonji Domain-Containing Histone Demethylases; Lysine; Methylation

2010
Errors in erasure: links between histone lysine methylation removal and disease.
    Progress in drug research. Fortschritte der Arzneimittelforschung. Progres des recherches pharmaceutiques, 2011, Volume: 67

    Topics: Animals; Cathepsin L; Cell Cycle Proteins; Histone Chaperones; Histone Demethylases; Histones; Humans; Lysine; Methylation; Neoplasms; Transcription Factors

2011
Epigenetic mechanisms of mental retardation.
    Progress in drug research. Fortschritte der Arzneimittelforschung. Progres des recherches pharmaceutiques, 2011, Volume: 67

    Topics: Acetylation; DNA Methylation; Epigenesis, Genetic; Histones; Humans; Intellectual Disability; Lysine; Methylation; Phosphorylation

2011
Histone variants and modifications in plant gene regulation.
    Current opinion in plant biology, 2011, Volume: 14, Issue:2

    Topics: Cell Cycle Proteins; Chromatin; DNA-Directed RNA Polymerases; Epigenesis, Genetic; Gene Expression Regulation, Plant; Histone Code; Histones; Lysine; Methylation; Plant Proteins; Plants

2011
Chatting histone modifications in mammals.
    Briefings in functional genomics, 2010, Volume: 9, Issue:5-6

    Topics: Acetylation; Animals; Arginine; Chromatin; Chromatin Assembly and Disassembly; Heterochromatin; Histone Code; Histones; Lysine; Mammals; Methylation; Protein Processing, Post-Translational; Ubiquitination

2010
Structure and mechanisms of lysine methylation recognition by the chromodomain in gene transcription.
    Biochemistry, 2011, Mar-29, Volume: 50, Issue:12

    Topics: Amino Acid Sequence; Animals; Chromatin; Chromatin Assembly and Disassembly; Humans; Lysine; Methylation; Molecular Sequence Data; Protein Structure, Tertiary; Transcription, Genetic

2011
Dynamics of histone H3 lysine 27 trimethylation in plant development.
    Current opinion in plant biology, 2011, Volume: 14, Issue:2

    Topics: Animals; Drosophila; Drosophila Proteins; Epigenesis, Genetic; Gene Expression Regulation, Developmental; Gene Expression Regulation, Plant; Gene Silencing; Genome, Plant; Histone-Lysine N-Methyltransferase; Histones; Lysine; Methylation; Plant Development; Plants; Polycomb Repressive Complex 1; Polycomb-Group Proteins; Repressor Proteins

2011
Role of histone modification on transcriptional regulation and HIV-1 gene expression: possible mechanisms of periodontal diseases in AIDS progression.
    Journal of oral science, 2011, Volume: 53, Issue:1

    Topics: Acetylation; Acquired Immunodeficiency Syndrome; Butyric Acid; Chronic Periodontitis; Epigenesis, Genetic; Gene Expression Regulation, Viral; Histone Acetyltransferases; Histone Deacetylases; Histones; HIV-1; Humans; Lysine; Methylation; Peptide Chain Elongation, Translational; Porphyromonas gingivalis; Virus Activation; Virus Latency

2011
Substrate and product specificities of SET domain methyltransferases.
    Epigenetics, 2011, Sep-01, Volume: 6, Issue:9

    Topics: Catalytic Domain; Enzyme Activation; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation; Myeloid-Lymphoid Leukemia Protein; NF-kappa B; Protein Interaction Mapping; Protein Structure, Tertiary; Structure-Activity Relationship; Substrate Specificity

2011
Alterations in histone H4 lysine 20 methylation: implications for cancer detection and prevention.
    Antioxidants & redox signaling, 2012, Jul-15, Volume: 17, Issue:2

    Topics: Animals; Epigenesis, Genetic; Epigenomics; Histones; Humans; Lysine; Methylation; Neoplasms

2012
Recognition of methylated histones: new twists and variations.
    Current opinion in structural biology, 2011, Volume: 21, Issue:6

    Topics: Animals; Chromatin; DNA; Histones; Humans; Lysine; Methylation; Models, Molecular; Nucleosomes; Protein Conformation

2011
Polycomb group complexes mediate developmental transitions in plants.
    Plant physiology, 2012, Volume: 158, Issue:1

    Topics: Animals; Arabidopsis Proteins; Chromatin; Drosophila Proteins; Epigenesis, Genetic; Flowers; Germ Cells, Plant; Lysine; MADS Domain Proteins; Methylation; Multiprotein Complexes; Plant Development; Plant Proteins; Plants; Reproduction; Seeds

2012
Lysine methylation: beyond histones.
    Acta biochimica et biophysica Sinica, 2012, Volume: 44, Issue:1

    Topics: Acetylation; Animals; Histone Demethylases; Histone-Lysine N-Methyltransferase; Humans; Lysine; Methylation; Methyltransferases; Mice; Protein Methyltransferases; Protein Processing, Post-Translational; Tumor Suppressor Protein p53

2012
Many keys to push: diversifying the 'readership' of plant homeodomain fingers.
    Acta biochimica et biophysica Sinica, 2012, Volume: 44, Issue:1

    Topics: Amino Acid Motifs; Amino Acid Sequence; DNA-Binding Proteins; Epigenesis, Genetic; Histone Code; Histones; Homeodomain Proteins; Humans; Lysine; Methylation; Models, Molecular; Plant Proteins; Plants; Protein Processing, Post-Translational; Sequence Alignment; SUMO-1 Protein; Ubiquitin-Protein Ligases

2012
Understanding the language of Lys36 methylation at histone H3.
    Nature reviews. Molecular cell biology, 2012, Jan-23, Volume: 13, Issue:2

    Topics: Animals; Comprehension; Gene Expression; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation; Models, Biological; Protein Processing, Post-Translational

2012
Structural biology of the chromodomain: form and function.
    Gene, 2012, Apr-01, Volume: 496, Issue:2

    Topics: Amino Acid Motifs; Animals; Chromatin; Drosophila melanogaster; Histones; Humans; Lysine; Methylation; Peptides; Phosphorylation; Protein Binding; Protein Conformation; Protein Processing, Post-Translational; Protein Structure, Secondary; Protein Structure, Tertiary; Transcription, Genetic

2012
PR-Set7 and H4K20me1: at the crossroads of genome integrity, cell cycle, chromosome condensation, and transcription.
    Genes & development, 2012, Feb-15, Volume: 26, Issue:4

    Topics: Animals; Cell Cycle; Chromosomes; DNA Damage; Gene Expression Regulation; Genome; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation

2012
[Epigenetic regulation of histone H3 lysine 9 methylation in leukemia].
    Zhongguo shi yan xue ye xue za zhi, 2012, Volume: 20, Issue:1

    Topics: Animals; Epigenesis, Genetic; Gene Expression Regulation, Neoplastic; Histones; Humans; Leukemia; Lysine; Methylation

2012
WRAD: enabler of the SET1-family of H3K4 methyltransferases.
    Briefings in functional genomics, 2012, Volume: 11, Issue:3

    Topics: Animals; Chromatin; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation; Multiprotein Complexes

2012
Lysine methylation and the regulation of p53.
    Essays in biochemistry, 2012, Volume: 52

    Topics: Animals; Humans; Lysine; Methylation; Models, Biological; Tumor Suppressor Protein p53

2012
Post-translational modifications of lysine in DNA-damage repair.
    Essays in biochemistry, 2012, Volume: 52

    Topics: Acetylation; Animals; DNA Repair; Humans; Lysine; Methylation; Models, Biological; Protein Processing, Post-Translational

2012
Discovery of lysine post-translational modifications through mass spectrometric detection.
    Essays in biochemistry, 2012, Volume: 52

    Topics: Animals; Humans; Lysine; Mass Spectrometry; Methylation; Protein Processing, Post-Translational; Ubiquitination

2012
Oncoepigenomics: making histone lysine methylation count.
    European journal of medicinal chemistry, 2012, Volume: 56

    Topics: Animals; Epigenomics; Histone Demethylases; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation; Neoplasms

2012
Epigenetic inheritance mediated by histone lysine methylation: maintaining transcriptional states without the precise restoration of marks?
    Philosophical transactions of the Royal Society of London. Series B, Biological sciences, 2013, Jan-05, Volume: 368, Issue:1609

    Topics: Animals; Chromatin Assembly and Disassembly; Epigenetic Repression; Histones; Inheritance Patterns; Lysine; Methylation; Mitosis; Models, Genetic; Nucleosomes; S Phase; Saccharomyces cerevisiae; Silent Information Regulator Proteins, Saccharomyces cerevisiae; Transcription, Genetic

2013
Tipping the lysine methylation balance in disease.
    Biopolymers, 2013, Volume: 99, Issue:2

    Topics: Histone-Lysine N-Methyltransferase; Humans; Lysine; Methylation; Mutation; Neoplasms; Nervous System Diseases

2013
Histone lysine methylation dynamics: establishment, regulation, and biological impact.
    Molecular cell, 2012, Nov-30, Volume: 48, Issue:4

    Topics: Animals; Histone Demethylases; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation

2012
One, two, three: how histone methylation is read.
    Epigenomics, 2012, Volume: 4, Issue:6

    Topics: Animals; Arginine; Chromatin; Epigenesis, Genetic; Histones; Humans; Lysine; Methylation; Protein Processing, Post-Translational

2012
Histone H4 lysine 20 methylation: key player in epigenetic regulation of genomic integrity.
    Nucleic acids research, 2013, Mar-01, Volume: 41, Issue:5

    Topics: Animals; Cell Cycle; Chromatin; DNA Damage; DNA Replication; Epigenesis, Genetic; Genomic Instability; Histone-Lysine N-Methyltransferase; Histones; Humans; Intracellular Signaling Peptides and Proteins; Lysine; Methylation; Tumor Suppressor p53-Binding Protein 1

2013
Regulation of nucleosome dynamics by histone modifications.
    Nature structural & molecular biology, 2013, Volume: 20, Issue:3

    Topics: Acetylation; Acylation; Adenosine Diphosphate; Chromatin; DNA; DNA Replication; Gene Expression Regulation; Glycosylation; Histones; Lysine; Methylation; Nucleosomes

2013
Transcriptional regulation by the Set7 lysine methyltransferase.
    Epigenetics, 2013, Volume: 8, Issue:4

    Topics: Animals; Chromatin; Chromosomal Proteins, Non-Histone; Gene Expression Regulation; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation; Transcription Factors; Transcription, Genetic

2013
Spp1 at the crossroads of H3K4me3 regulation and meiotic recombination.
    Epigenetics, 2013, Volume: 8, Issue:4

    Topics: Animals; DNA Breaks, Double-Stranded; DNA-Binding Proteins; Endodeoxyribonucleases; Histone-Lysine N-Methyltransferase; Histones; Lysine; Meiosis; Methylation; Protein Subunits; Recombination, Genetic; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins

2013
On your histone mark, SET, methylate!
    Epigenetics, 2013, Volume: 8, Issue:5

    Topics: Amino Acid Sequence; Chromosomal Proteins, Non-Histone; Histone-Lysine N-Methyltransferase; Histones; Lysine; Methylation; Models, Biological; Molecular Sequence Data

2013
The path of lysine to pyrrolysine.
    Current opinion in chemical biology, 2013, Volume: 17, Issue:4

    Topics: Intramolecular Transferases; Ligases; Lysine; Methylation; Oxidation-Reduction

2013
Small molecule epigenetic inhibitors targeted to histone lysine methyltransferases and demethylases.
    Quarterly reviews of biophysics, 2013, Volume: 46, Issue:4

    Topics: Allosteric Site; Animals; Chromatin; Drug Design; Drug Evaluation, Preclinical; Enzyme Inhibitors; Epigenesis, Genetic; Genome; Histone Demethylases; Histone-Lysine N-Methyltransferase; Histones; Humans; Inhibitory Concentration 50; Lysine; Methylation; Nucleosomes

2013
Histone H3 lysine methylation in cognition and intellectual disability disorders.
    Learning & memory (Cold Spring Harbor, N.Y.), 2013, Sep-17, Volume: 20, Issue:10

    Topics: Animals; Cognition Disorders; Epigenesis, Genetic; Histones; Humans; Intellectual Disability; Lysine; Methylation; Protein Processing, Post-Translational

2013
Decoding the histone code: Role of H3K36me3 in mismatch repair and implications for cancer susceptibility and therapy.
    Cancer research, 2013, Nov-01, Volume: 73, Issue:21

    Topics: Base Pair Mismatch; Histone Code; Humans; Lysine; Methylation; Neoplasms; Polycomb Repressive Complex 2

2013
Mind the methyl: methyllysine binding proteins in epigenetic regulation.
    ChemMedChem, 2014, Volume: 9, Issue:3

    Topics: Carrier Proteins; Drug Discovery; Epigenesis, Genetic; Histones; Humans; Lysine; Methylation

2014
The histone methyltransferase Dot1/DOT1L as a critical regulator of the cell cycle.
    Cell cycle (Georgetown, Tex.), 2014, Volume: 13, Issue:5

    Topics: Animals; Cell Cycle; Cellular Reprogramming; Chromatin; DNA Damage; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation; Methyltransferases; Neoplasms

2014
Understanding the relationship between DNA methylation and histone lysine methylation.
    Biochimica et biophysica acta, 2014, Volume: 1839, Issue:12

    Topics: Animals; CpG Islands; DNA Methylation; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation; Protein Processing, Post-Translational

2014
An unexpected journey: lysine methylation across the proteome.
    Biochimica et biophysica acta, 2014, Volume: 1839, Issue:12

    Topics: Animals; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation; Protein Processing, Post-Translational; Proteome

2014
Readers of histone methylarginine marks.
    Biochimica et biophysica acta, 2014, Volume: 1839, Issue:8

    Topics: Arginine; Chromatin; Epigenesis, Genetic; Histones; Humans; Lysine; Methylation; Protein Binding; Protein Interaction Domains and Motifs; Protein Processing, Post-Translational; Protein-Arginine N-Methyltransferases; Repressor Proteins; Ribonucleoproteins; RNA-Binding Proteins; Signal Transduction

2014
Chromatin dynamics: interplay between remodeling enzymes and histone modifications.
    Biochimica et biophysica acta, 2014, Volume: 1839, Issue:8

    Topics: Acetylation; Animals; Chromatin; Chromatin Assembly and Disassembly; Chromosomal Proteins, Non-Histone; DNA Repair; Epigenesis, Genetic; Eukaryotic Cells; Histones; Humans; Lysine; Methylation; Protein Binding; Protein Processing, Post-Translational; Transcription Factors; Transcription, Genetic

2014
Enhancer biology and enhanceropathies.
    Nature structural & molecular biology, 2014, Volume: 21, Issue:3

    Topics: Animals; Chromatin; Chromosome Mapping; Computational Biology; Drosophila melanogaster; Enhancer Elements, Genetic; Gene Expression Regulation; Genome-Wide Association Study; Histones; Humans; Lysine; Methylation; Mutation; Regulatory Sequences, Nucleic Acid; RNA Polymerase II; RNA, Untranslated

2014
Hitting the 'mark': interpreting lysine methylation in the context of active transcription.
    Biochimica et biophysica acta, 2014, Volume: 1839, Issue:12

    Topics: Animals; DNA Methylation; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation; Protein Processing, Post-Translational; Transcription, Genetic

2014
Histone lysine methylation and chromatin replication.
    Biochimica et biophysica acta, 2014, Volume: 1839, Issue:12

    Topics: Animals; Chromatin; DNA Replication; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation; Protein Processing, Post-Translational

2014
The functional diversity of protein lysine methylation.
    Molecular systems biology, 2014, Apr-08, Volume: 10

    Topics: Acetylation; Amino Acid Sequence; Histones; Lysine; Methylation; Protein Processing, Post-Translational; Proteins; Systems Biology; Ubiquitination

2014
Towards understanding methyllysine readout.
    Biochimica et biophysica acta, 2014, Volume: 1839, Issue:8

    Topics: Chromosomal Proteins, Non-Histone; Epigenesis, Genetic; Histones; Humans; Lysine; Methylation; Models, Molecular; Nucleosomes; Protein Binding; Protein Interaction Domains and Motifs; Protein Processing, Post-Translational; Protein Structure, Tertiary; Small Molecule Libraries; Transcription Factors

2014
Structural biology-based insights into combinatorial readout and crosstalk among epigenetic marks.
    Biochimica et biophysica acta, 2014, Volume: 1839, Issue:8

    Topics: DNA Methylation; Epigenesis, Genetic; Eukaryotic Cells; Histones; Humans; Lysine; Methylation; Models, Molecular; Nucleosomes; Protein Binding; Protein Interaction Domains and Motifs; Protein Processing, Post-Translational; Signal Transduction; Transcription Factors; Transcription, Genetic

2014
[The mechanism of histone lysine methylation of plant involved in gene expression and regulation].
    Yi chuan = Hereditas, 2014, Volume: 36, Issue:3

    Topics: Gene Expression Regulation, Plant; Histones; Lysine; Methylation; Plant Development; Plants

2014
Examining the impact of gene variants on histone lysine methylation.
    Biochimica et biophysica acta, 2014, Volume: 1839, Issue:12

    Topics: Animals; Histone Demethylases; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation; Mutation; Neoplasms; Polymorphism, Single Nucleotide

2014
Molecular basis for substrate recognition by lysine methyltransferases and demethylases.
    Biochimica et biophysica acta, 2014, Volume: 1839, Issue:12

    Topics: Animals; Histone Demethylases; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation; Models, Molecular; Protein Binding; Substrate Specificity

2014
H3K4me3 breadth is linked to cell identity and transcriptional consistency.
    Cell, 2014, Jul-31, Volume: 158, Issue:3

    Topics: Animals; Artificial Intelligence; Cells; Genomics; Histone Code; Histones; Humans; Lysine; Methylation; Mice, Inbred C57BL; Neural Stem Cells; RNA Polymerase II; Transcription, Genetic

2014
Structural and functional coordination of DNA and histone methylation.
    Cold Spring Harbor perspectives in biology, 2014, Aug-01, Volume: 6, Issue:8

    Topics: Arginine; Chromatin; DNA; DNA Methylation; Epigenesis, Genetic; Gene Expression Regulation; Histones; Lysine; Methylation; Models, Genetic; Models, Molecular; Oxidation-Reduction; Protein Structure, Tertiary

2014
Histone lysine methylation in diabetic nephropathy.
    Journal of diabetes research, 2014, Volume: 2014

    Topics: Animals; Blood Glucose; Chromatin Assembly and Disassembly; Diabetic Nephropathies; Gene Expression Regulation; Histone Demethylases; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation; Signal Transduction

2014
The role of microRNAs in diabetic nephropathy.
    Journal of diabetes research, 2014, Volume: 2014

    Topics: Acetylation; Animals; Chromatin; Diabetic Nephropathies; Disease Models, Animal; Disease Progression; Dogs; Epigenesis, Genetic; Epigenomics; Histones; Humans; Inflammation; Kidney; Lysine; Methylation; Mice; Mice, Transgenic; MicroRNAs; Rats

2014
Lysine methylation in cancer: SMYD3-MAP3K2 teaches us new lessons in the Ras-ERK pathway.
    BioEssays : news and reviews in molecular, cellular and developmental biology, 2014, Volume: 36, Issue:12

    Topics: Adenocarcinoma; Antineoplastic Agents; Gene Expression Regulation, Neoplastic; Histone-Lysine N-Methyltransferase; Humans; Lung Neoplasms; Lysine; MAP Kinase Kinase Kinase 2; MAP Kinase Kinase Kinases; Methylation; Mitogen-Activated Protein Kinase 1; Mitogen-Activated Protein Kinase 3; Pancreatic Neoplasms; Protein Binding; Protein Kinase Inhibitors; Protein Phosphatase 2; Proto-Oncogene Proteins p21(ras); Signal Transduction

2014
Targeting histone lysine methylation in cancer.
    Pharmacology & therapeutics, 2015, Volume: 150

    Topics: Animals; Antineoplastic Agents; Histone Demethylases; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation; Molecular Targeted Therapy; Neoplasms; Signal Transduction

2015
Critical roles of non-histone protein lysine methylation in human tumorigenesis.
    Nature reviews. Cancer, 2015, Volume: 15, Issue:2

    Topics: Cell Transformation, Neoplastic; Chromosomal Proteins, Non-Histone; Histone-Lysine N-Methyltransferase; Humans; Lysine; Methylation; Retinoblastoma Protein; STAT3 Transcription Factor; Tumor Suppressor Protein p53

2015
Epigenetic regulation by histone demethylases in hypoxia.
    Epigenomics, 2015, Volume: 7, Issue:5

    Topics: Cardiovascular Diseases; Epigenesis, Genetic; Histones; Humans; Hypoxia; Jumonji Domain-Containing Histone Demethylases; Lysine; Methylation; Models, Genetic; Neoplasms

2015
Stem Cell Depletion by Global Disorganization of the H3K9me3 Epigenetic Marker in Aging.
    Rejuvenation research, 2015, Volume: 18, Issue:4

    Topics: Aging; Animals; Biomarkers; Chromobox Protein Homolog 5; Epigenesis, Genetic; Histones; Humans; Lysine; Methylation; Stem Cells

2015
Regulation of cell differentiation and function by the euchromatin histone methyltranserfases G9a and GLP.
    Biochemistry and cell biology = Biochimie et biologie cellulaire, 2016, Volume: 94, Issue:1

    Topics: Adipogenesis; Animals; Cell Differentiation; Drosophila melanogaster; Euchromatin; Histone-Lysine N-Methyltransferase; Histones; Humans; Immunity, Cellular; Lysine; Memory; Methylation; Mice; Mice, Knockout; Mouse Embryonic Stem Cells; Neuronal Plasticity; Rats; Substance-Related Disorders

2016
Emerging roles of lysine methylation on non-histone proteins.
    Cellular and molecular life sciences : CMLS, 2015, Volume: 72, Issue:22

    Topics: Animals; Estrogen Receptor alpha; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation; Models, Biological; Protein Processing, Post-Translational; Tumor Suppressor Protein p53

2015
Histone methylation modifiers in cellular signaling pathways.
    Cellular and molecular life sciences : CMLS, 2015, Volume: 72, Issue:23

    Topics: Amino Acid Sequence; Arginine; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; MAP Kinase Signaling System; Methylation; Molecular Sequence Data; NF-kappa B; Phosphatidylinositol 3-Kinases; Proto-Oncogene Proteins c-akt; Proto-Oncogene Proteins c-raf; Signal Transduction; Wnt Signaling Pathway

2015
Dynamics of H3K27me3 methylation and demethylation in plant development.
    Plant signaling & behavior, 2015, Volume: 10, Issue:9

    Topics: Gene Expression Regulation, Plant; Histones; Lysine; Methylation; Models, Biological; Plant Development

2015
NF-κB: Regulation by Methylation.
    Cancer research, 2015, Sep-15, Volume: 75, Issue:18

    Topics: Animals; Arginine; Gene Expression Regulation; Gene Expression Regulation, Neoplastic; Gene Knockdown Techniques; Histone-Lysine N-Methyltransferase; Humans; Lysine; Methylation; Neoplasm Proteins; NF-kappa B; Protein Processing, Post-Translational; Protein-Arginine N-Methyltransferases; Transcription, Genetic

2015
Histone H3K4 trimethylation: dynamic interplay with pre-mRNA splicing.
    Biochemistry and cell biology = Biochimie et biologie cellulaire, 2016, Volume: 94, Issue:1

    Topics: Acetylation; Animals; CpG Islands; Epigenesis, Genetic; Exons; Histone Acetyltransferases; Histone Code; Histone Demethylases; Histone-Lysine N-Methyltransferase; Histones; Humans; Introns; Lysine; Methylation; Nucleosomes; Promoter Regions, Genetic; RNA Precursors; RNA Splicing; Transcription, Genetic

2016
Post-translational control of transcription factors: methylation ranks highly.
    The FEBS journal, 2015, Volume: 282, Issue:23

    Topics: Arginine; Humans; Lysine; Methylation; Protein Processing, Post-Translational; Transcription Factors

2015
Chromatin remodeling and bivalent histone modifications in embryonic stem cells.
    EMBO reports, 2015, Volume: 16, Issue:12

    Topics: Animals; Chromatin Assembly and Disassembly; Embryonic Stem Cells; Epigenesis, Genetic; Gene Expression Regulation, Developmental; Histone Code; Histones; Humans; Lysine; Methylation; Mice; Promoter Regions, Genetic

2015
Histone H4 Lysine 20 (H4K20) Methylation, Expanding the Signaling Potential of the Proteome One Methyl Moiety at a Time.
    Molecular & cellular proteomics : MCP, 2016, Volume: 15, Issue:3

    Topics: Animals; Chromatin; Epigenesis, Genetic; Histones; Humans; Lysine; Methylation; Protein Processing, Post-Translational; Proteome; Signal Transduction

2016
Modulation of the cytoplasmic functions of mammalian post-transcriptional regulatory proteins by methylation and acetylation: a key layer of regulation waiting to be uncovered?
    Biochemical Society transactions, 2015, Volume: 43, Issue:6

    Topics: Acetylation; Animals; Cytoplasm; Humans; Lysine; Methylation; Models, Genetic; Protein Processing, Post-Translational; Proteome; RNA, Messenger

2015
Molecular Recognition of Lys and Arg Methylation.
    ACS chemical biology, 2016, Mar-18, Volume: 11, Issue:3

    Topics: Arginine; Epigenesis, Genetic; Humans; Lysine; Methylation; Protein Binding; Protein Processing, Post-Translational

2016
SET domain-mediated lysine methylation in lower organisms regulates growth and transcription in hosts.
    Annals of the New York Academy of Sciences, 2016, Volume: 1376, Issue:1

    Topics: Amino Acid Sequence; Animals; Host-Pathogen Interactions; Humans; Lysine; Methylation; Prokaryotic Cells; Protein Domains; Transcription, Genetic

2016
Chemical probes for methyl lysine reader domains.
    Current opinion in chemical biology, 2016, Volume: 33

    Topics: Humans; Lysine; Methylation; Models, Molecular; Molecular Mimicry; Molecular Probes; Peptides

2016
Advances and challenges in understanding histone demethylase biology.
    Current opinion in chemical biology, 2016, Volume: 33

    Topics: Catalysis; Clinical Trials as Topic; Enzyme Inhibitors; Epigenesis, Genetic; Genomics; Histone Demethylases; Histones; Humans; Lysine; Methylation

2016
Host-guest chemistry that directly targets lysine methylation: synthetic host molecules as alternatives to bio-reagents.
    Chemical communications (Cambridge, England), 2016, Aug-09, Volume: 52, Issue:66

    Topics: Animals; Binding Sites; Biological Products; Humans; Indicators and Reagents; Lysine; Methylation; Protein Structure, Secondary; Protein Structure, Tertiary

2016
Protein lysine methylation by seven-β-strand methyltransferases.
    The Biochemical journal, 2016, 07-15, Volume: 473, Issue:14

    Topics: Animals; Histone-Lysine N-Methyltransferase; Humans; Lysine; Methylation; Methyltransferases; Protein Processing, Post-Translational; Substrate Specificity

2016
Writers and Erasers of Histone Lysine methylation with Clinically Applied Modulators: Promising Target for Cancer Therapy.
    Current pharmaceutical design, 2016, Volume: 22, Issue:39

    Topics: Antineoplastic Agents; Histones; Humans; Lysine; Methylation; Neoplasms

2016
Approaches and Guidelines for the Identification of Novel Substrates of Protein Lysine Methyltransferases.
    Cell chemical biology, 2016, Sep-22, Volume: 23, Issue:9

    Topics: Histone-Lysine N-Methyltransferase; Humans; Lysine; Methylation; Models, Molecular; Reproducibility of Results; Substrate Specificity

2016
Structural aspects of small-molecule inhibition of methyllysine reader proteins.
    Future medicinal chemistry, 2016, Volume: 8, Issue:13

    Topics: Animals; Humans; Lysine; Methylation; Molecular Structure; Protein Binding; Protein Domains; Small Molecule Libraries; Structure-Activity Relationship

2016
Nonhistone Lysine Methylation in the Regulation of Cancer Pathways.
    Cold Spring Harbor perspectives in medicine, 2016, Nov-01, Volume: 6, Issue:11

    Topics: Cell Transformation, Neoplastic; Chromosomal Proteins, Non-Histone; DNA Damage; Epigenesis, Genetic; Histone-Lysine N-Methyltransferase; Humans; Lysine; Methylation; Neoplasms; Protein Processing, Post-Translational; Signal Transduction

2016
Tug of war: adding and removing histone lysine methylation in Arabidopsis.
    Current opinion in plant biology, 2016, Volume: 34

    Topics: Animals; Arabidopsis; Histones; Lysine; Methylation

2016
Beyond histones - the expanding roles of protein lysine methylation.
    The FEBS journal, 2017, Volume: 284, Issue:17

    Topics: Acetylation; Animals; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation; Phosphorylation; Protein Interaction Maps; Protein Processing, Post-Translational

2017
Methyllysine binding domains: Structural insight and small molecule probe development.
    European journal of medicinal chemistry, 2017, Aug-18, Volume: 136

    Topics: Binding Sites; Humans; Lysine; Methylation; Molecular Probes; Molecular Structure; Small Molecule Libraries

2017
Histone Lysine Methylation and Neurodevelopmental Disorders.
    International journal of molecular sciences, 2017, Jun-30, Volume: 18, Issue:7

    Topics: Animals; Epigenesis, Genetic; Histones; Humans; Lysine; Methylation; Neurodevelopmental Disorders; Protein Processing, Post-Translational

2017
Orchestration of H3K27 methylation: mechanisms and therapeutic implication.
    Cellular and molecular life sciences : CMLS, 2018, Volume: 75, Issue:2

    Topics: Animals; Gene Silencing; Heterochromatin; Histone Demethylases; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation; Protein Processing, Post-Translational

2018
Chemical biology approaches for studying posttranslational modifications.
    RNA biology, 2018, Volume: 15, Issue:4-5

    Topics: Acetylation; Chemistry Techniques, Synthetic; Codon, Terminator; Genetic Code; Glycosylation; Humans; Lysine; Methylation; Nitrates; Phosphorylation; Protein Processing, Post-Translational; Proteome; Selenocysteine; Sulfates; Ubiquitination

2018
Histone lysine methylation and congenital heart disease: From bench to bedside (Review).
    International journal of molecular medicine, 2017, Volume: 40, Issue:4

    Topics: Animals; Heart; Heart Defects, Congenital; Histones; Humans; Lysine; Methylation; Translational Research, Biomedical

2017
Broad Chromatin Domains: An Important Facet of Genome Regulation.
    BioEssays : news and reviews in molecular, cellular and developmental biology, 2017, Volume: 39, Issue:12

    Topics: Animals; Caenorhabditis elegans; Chromatin; Chromatin Assembly and Disassembly; Chromatin Immunoprecipitation; Drosophila melanogaster; Epigenesis, Genetic; Genome; Histones; Lysine; Methylation; Mice; Promoter Regions, Genetic; Protein Processing, Post-Translational

2017
Histone Methyltransferase EZH2: A Therapeutic Target for Ovarian Cancer.
    Molecular cancer therapeutics, 2018, Volume: 17, Issue:3

    Topics: Enhancer of Zeste Homolog 2 Protein; Female; Gene Expression Regulation, Neoplastic; Histones; Humans; Lysine; Methylation; Molecular Targeted Therapy; Ovarian Neoplasms; Small Molecule Libraries

2018
Synthetic Receptors for the Recognition and Discrimination of Post-Translationally Methylated Lysines.
    Chembiochem : a European journal of chemical biology, 2018, 11-16, Volume: 19, Issue:22

    Topics: Antibodies; Calixarenes; Lysine; Macrocyclic Compounds; Methylation; Phenylalanine; Protein Binding; Protein Processing, Post-Translational; Proteins; Receptors, Artificial; Reproducibility of Results

2018
Emerging impacts of biological methylation on genetic information.
    Journal of biochemistry, 2019, Jan-01, Volume: 165, Issue:1

    Topics: Animals; Arginine; Demethylation; DNA; DNA Methylation; Humans; Lysine; Methylation; Methyltransferases; Protein Biosynthesis; Proteins; RNA

2019
Lysine methylation: Implications in neurodegenerative disease.
    Brain research, 2019, 03-15, Volume: 1707

    Topics: Animals; Epigenesis, Genetic; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation; Neurodegenerative Diseases; Protein Processing, Post-Translational; Signal Transduction

2019
Lysine methylation of transcription factors in cancer.
    Cell death & disease, 2019, 03-29, Volume: 10, Issue:4

    Topics: Antineoplastic Agents; DNA-Binding Proteins; Gene Expression Regulation, Neoplastic; Histone Demethylases; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation; Neoplasms; Protein Processing, Post-Translational; Protein Stability; Transcription Factors

2019
Molecular Mechanisms Directing PRC2 Recruitment and H3K27 Methylation.
    Molecular cell, 2019, 04-04, Volume: 74, Issue:1

    Topics: Animals; Chromatin Assembly and Disassembly; DNA Methylation; Histones; Humans; Lysine; Methylation; Polycomb Repressive Complex 2; Protein Binding

2019
[Histone H3K27me3 in the regulation of skeletal muscle development].
    Yi chuan = Hereditas, 2019, Apr-20, Volume: 41, Issue:4

    Topics: Animals; Cell Proliferation; Histones; Lysine; Mammals; Methylation; Muscle Cells; Muscle Development; Muscle, Skeletal; Nucleosomes

2019
Lysine methylation regulates nervous system diseases.
    Neuropeptides, 2019, Volume: 76

    Topics: Animals; Epigenesis, Genetic; Histone Demethylases; Humans; Lysine; Methylation; Methyltransferases; Nervous System Diseases

2019
Lysine methylation signaling of non-histone proteins in the nucleus.
    Cellular and molecular life sciences : CMLS, 2019, Volume: 76, Issue:15

    Topics: Cell Nucleus; Histone-Lysine N-Methyltransferase; Humans; Lysine; Methylation; Protein Array Analysis; Signal Transduction; Transcription Factors

2019
Introduction to the multi-author review on methylation in cellular physiology.
    Cellular and molecular life sciences : CMLS, 2019, Volume: 76, Issue:15

    Topics: Arginine; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation; Protein Processing, Post-Translational; Protein-Arginine N-Methyltransferases

2019
Lysine-specific post-translational modifications of proteins in the life cycle of viruses.
    Cell cycle (Georgetown, Tex.), 2019, Volume: 18, Issue:17

    Topics: Acetylation; Humans; Life Cycle Stages; Lysine; Methylation; Phosphorylation; Protein Processing, Post-Translational; Ubiquitination; Viral Proteins; Virus Replication; Viruses

2019
Lysine Methylation Regulators Moonlighting outside the Epigenome.
    Molecular cell, 2019, 09-19, Volume: 75, Issue:6

    Topics: Animals; Epigenome; Humans; Lysine; Methylation; Neoplasm Proteins; Neoplasms; Protein Processing, Post-Translational; Signal Transduction

2019
The control of gene expression and cell identity by H3K9 trimethylation.
    Development (Cambridge, England), 2019, 09-20, Volume: 146, Issue:19

    Topics: Animals; Feedback, Physiological; Gene Expression Regulation, Developmental; Heterochromatin; Histones; Humans; Lysine; Methylation

2019
Using Yeast to Define the Regulatory Role of Protein Lysine Methylation.
    Current protein & peptide science, 2020, Volume: 21, Issue:7

    Topics: Chromatin; Gene Expression Regulation, Fungal; Histone-Lysine N-Methyltransferase; Histones; Lysine; Methylation; Protein Processing, Post-Translational; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins; Signal Transduction

2020
Insights into The Function and Regulation of Jumonji C Lysine Demethylases as Hypoxic Responsive Enzymes.
    Current protein & peptide science, 2020, Volume: 21, Issue:7

    Topics: Biocatalysis; Chromosomal Proteins, Non-Histone; Histone Demethylases; Histones; Humans; Hypoxia; Hypoxia-Inducible Factor 1, alpha Subunit; Jumonji Domain-Containing Histone Demethylases; Kinetics; Lysine; Methylation; Oxygen; Prolyl Hydroxylases; Protein Processing, Post-Translational; Signal Transduction

2020
Lysine Methyltransferases Signaling: Histones are Just the Tip of the Iceberg.
    Current protein & peptide science, 2020, Volume: 21, Issue:7

    Topics: Chromosomal Proteins, Non-Histone; Gene Expression Regulation, Neoplastic; Histone Demethylases; Histones; Humans; Hypoxia-Inducible Factor 1, alpha Subunit; Jumonji Domain-Containing Histone Demethylases; Lysine; Methylation; Neoplasms; Protein Processing, Post-Translational; Signal Transduction

2020
Protein lysine methylation in the regulation of anoxia tolerance in the red eared slider turtle, Trachemys scripta elegans.
    Comparative biochemistry and physiology. Part D, Genomics & proteomics, 2020, Volume: 34

    Topics: Adaptation, Physiological; Animals; Gene Expression Regulation; Hypoxia; Lysine; Methylation; Protein Processing, Post-Translational; Turtles

2020
The function of histone lysine methylation related SET domain group proteins in plants.
    Protein science : a publication of the Protein Society, 2020, Volume: 29, Issue:5

    Topics: Arabidopsis; Histone-Lysine N-Methyltransferase; Histones; Lysine; Methylation; Plant Proteins; PR-SET Domains

2020
The Chemical Biology of Reversible Lysine Post-translational Modifications.
    Cell chemical biology, 2020, 08-20, Volume: 27, Issue:8

    Topics: Acetylation; Lysine; Lysine Acetyltransferases; Methylation; Protein Methyltransferases; Small Molecule Libraries; Ubiquitin-Specific Proteases; Ubiquitination

2020
Current understanding of plant Polycomb group proteins and the repressive histone H3 Lysine 27 trimethylation.
    Biochemical Society transactions, 2020, 08-28, Volume: 48, Issue:4

    Topics: Animals; Arabidopsis; Arabidopsis Proteins; Epigenesis, Genetic; Gene Silencing; Histones; Lysine; Methylation; Polycomb-Group Proteins; RNA, Untranslated; Transcription Factors

2020
Reciprocal skeletal phenotypes of PRC2-related overgrowth and Rubinstein-Taybi syndromes: potential role of H3K27 modifications.
    Cold Spring Harbor molecular case studies, 2020, Volume: 6, Issue:4

    Topics: Acylation; Animals; Disease Models, Animal; Histones; Humans; Lysine; Methylation; Mice; Polycomb-Group Proteins; Rubinstein-Taybi Syndrome

2020
Histone Methyltransferase SETDB1: A Common Denominator of Tumorigenesis with Therapeutic Potential.
    Cancer research, 2021, 02-01, Volume: 81, Issue:3

    Topics: Carcinogenesis; Down-Regulation; Gene Expression Regulation, Neoplastic; Genes, Tumor Suppressor; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation; Neoplasm Proteins; Neoplasms; Protein Processing, Post-Translational; Repressor Proteins; Transcription, Genetic

2021
Methylation of histone 4's lysine 20: a critical analysis of the state of the field.
    Physiological genomics, 2021, 01-01, Volume: 53, Issue:1

    Topics: Animals; Cell Cycle; Embryonic Development; Histones; Humans; Lysine; Methylation; Neoplasms

2021
Histone lysine methyltransferase SETDB1 as a novel target for central nervous system diseases.
    Progress in neurobiology, 2021, Volume: 200

    Topics: Central Nervous System Diseases; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation

2021
H3K4 trimethylation dynamics impact diverse developmental and environmental responses in plants.
    Planta, 2021, Jan-02, Volume: 253, Issue:1

    Topics: Chromatin; Gene Expression Regulation, Plant; Histones; Lysine; Methylation; Plant Development; Plant Proteins; Plants

2021
Epigenetics and beyond: targeting writers of protein lysine methylation to treat disease.
    Nature reviews. Drug discovery, 2021, Volume: 20, Issue:4

    Topics: Animals; Antineoplastic Agents; Drug Development; Epigenesis, Genetic; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation; Protein Processing, Post-Translational

2021
Noncanonical Functions of the Polycomb Group Protein EZH2 in Breast Cancer.
    The American journal of pathology, 2021, Volume: 191, Issue:5

    Topics: Breast Neoplasms; Enhancer of Zeste Homolog 2 Protein; Female; Histones; Humans; Lysine; Methylation

2021
Coordinated methyl readers: Functional communications in cancer.
    Seminars in cancer biology, 2022, Volume: 83

    Topics: Histones; Humans; Lysine; Methylation; Methyltransferases; Neoplasms

2022
Allosteric regulation of histone lysine methyltransferases: from context-specific regulation to selective drugs.
    Biochemical Society transactions, 2021, 04-30, Volume: 49, Issue:2

    Topics: Allosteric Regulation; Drug Development; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation; Pharmaceutical Preparations; Protein Binding; Protein Conformation; Protein Subunits

2021
Past, present, and perspectives of protein N-terminal methylation.
    Current opinion in chemical biology, 2021, Volume: 63

    Topics: Amines; Arginine; Chromatin; DNA; DNA Repair; Humans; Lysine; Methylation; Methyltransferases; Peptidomimetics; Protein Binding; Protein Processing, Post-Translational; Proteins; Signal Transduction; Substrate Specificity

2021
Improved methods for targeting epigenetic reader domains of acetylated and methylated lysine.
    Current opinion in chemical biology, 2021, Volume: 63

    Topics: Acetylation; Allosteric Regulation; Allosteric Site; Epigenesis, Genetic; Histones; Humans; Ligands; Lysine; Methylation; Peptidomimetics; Protein Binding; Protein Conformation; Protein Processing, Post-Translational; Structure-Activity Relationship

2021
Not just a writer: PRC2 as a chromatin reader.
    Biochemical Society transactions, 2021, 06-30, Volume: 49, Issue:3

    Topics: Animals; Chromatin; Epigenesis, Genetic; Genome; Histones; Humans; Lysine; Methylation; Polycomb Repressive Complex 2; Protein Binding

2021
The role of demethylases in cardiac development and disease.
    Journal of molecular and cellular cardiology, 2021, Volume: 158

    Topics: Adult; Animals; Chromatin; Chromatin Assembly and Disassembly; Enzyme Inhibitors; Epigenesis, Genetic; Heart; Heart Failure; Histones; Humans; Jumonji Domain-Containing Histone Demethylases; Lysine; Methylation; Myocardium; Protein Processing, Post-Translational

2021
New connections between ubiquitylation and methylation in the co-transcriptional histone modification network.
    Current genetics, 2021, Volume: 67, Issue:5

    Topics: Histone Code; Histones; Humans; Lysine; Methylation; Ubiquitination

2021
Ready, SET, Go: Post-translational regulation of the histone lysine methylation network in budding yeast.
    The Journal of biological chemistry, 2021, Volume: 297, Issue:2

    Topics: Epigenesis, Genetic; Histones; Lysine; Methylation; Phosphorylation; Protein Processing, Post-Translational; Saccharomycetales; Ubiquitination

2021
Dynamic changes of histone methylation in mammalian oocytes and early embryos.
    Histochemistry and cell biology, 2022, Volume: 157, Issue:1

    Topics: Animals; Histones; Lysine; Methylation; Oocytes; Protein Processing, Post-Translational

2022
Non-histone Methylation of SET7/9 and its Biological Functions.
    Recent patents on anti-cancer drug discovery, 2022, Volume: 17, Issue:3

    Topics: Animals; Biological Phenomena; Cell Proliferation; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Male; Methylation

2022
Molecular mechanisms in governing genomic stability and tumor suppression by the SETD2 H3K36 methyltransferase.
    The international journal of biochemistry & cell biology, 2022, Volume: 144

    Topics: Animals; Carcinogenesis; Chromatin; Genomic Instability; Histones; Humans; Lysine; Mammals; Methylation; Neoplasms

2022
Emerging roles of JMJD3 in cancer.
    Clinical & translational oncology : official publication of the Federation of Spanish Oncology Societies and of the National Cancer Institute of Mexico, 2022, Volume: 24, Issue:7

    Topics: Apoptosis; Female; Histones; Humans; Jumonji Domain-Containing Histone Demethylases; Lysine; Male; Methylation; Neoplasms

2022
The SUV4-20H Histone Methyltransferases in Health and Disease.
    International journal of molecular sciences, 2022, Apr-25, Volume: 23, Issue:9

    Topics: Chromatin; Histone Methyltransferases; Histones; Lysine; Methylation

2022
Disorders of histone methylation: Molecular basis and clinical syndromes.
    Clinical genetics, 2022, Volume: 102, Issue:3

    Topics: Histone Demethylases; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation; Syndrome

2022
Chemical biology and pharmacology of histone lysine methylation inhibitors.
    Biochimica et biophysica acta. Gene regulatory mechanisms, 2022, Volume: 1865, Issue:6

    Topics: Biology; Epigenesis, Genetic; Histones; Humans; Intracellular Signaling Peptides and Proteins; Lysine; Methylation; Neoplasms; Protein Processing, Post-Translational

2022
Histone Lysine Methylation Modification and Its Role in Vascular Calcification.
    Frontiers in endocrinology, 2022, Volume: 13

    Topics: Aged; Histones; Humans; Lysine; Methylation; Prospective Studies; Vascular Calcification

2022
Targeting histone demethylases as a potential cancer therapy (Review).
    International journal of oncology, 2022, Volume: 61, Issue:3

    Topics: Histone Demethylases; Histones; Humans; Lysine; Methylation; Neoplasms

2022
Role of histone methylation in skin cancers: Histone methylation-modifying enzymes as a new class of targets for skin cancer treatment.
    Biochimica et biophysica acta. Reviews on cancer, 2023, Volume: 1878, Issue:3

    Topics: Histone Demethylases; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation; Skin Neoplasms

2023
Chemical tools targeting readers of lysine methylation.
    Current opinion in chemical biology, 2023, Volume: 74

    Topics: Chromatin; Histones; Lysine; Methylation; Protein Binding

2023
Human seven-β-strand (METTL) methyltransferases - conquering the universe of protein lysine methylation.
    The Journal of biological chemistry, 2023, Volume: 299, Issue:6

    Topics: Histones; Humans; Lysine; Methylation; Methyltransferases; Protein Conformation, beta-Strand; Protein Methyltransferases; Protein Processing, Post-Translational

2023
The engagement of histone lysine methyltransferases with nucleosomes: structural basis, regulatory mechanisms, and therapeutic implications.
    Protein & cell, 2023, 04-13, Volume: 14, Issue:3

    Topics: Histone-Lysine N-Methyltransferase; Histones; Lysine; Methylation; Methyltransferases; Nucleosomes

2023
Recent advances in the development of peptide-based inhibitors targeting epigenetic readers of histone lysine acetylation and methylation marks.
    Current opinion in chemical biology, 2023, Volume: 75

    Topics: Acetylation; Epigenesis, Genetic; Histones; Lysine; Methylation; Peptides

2023
Post-translational modifications of lysine-specific demethylase 1.
    Biochimica et biophysica acta. Gene regulatory mechanisms, 2023, Volume: 1866, Issue:4

    Topics: Histone Demethylases; Histones; Humans; Lysine; Methylation; Protein Processing, Post-Translational

2023
Lysine methylation signaling in skeletal muscle biology: from myogenesis to clinical insights.
    The Biochemical journal, 2023, Dec-13, Volume: 480, Issue:23

    Topics: Biology; Histones; Lysine; Methylation; Muscle Development; Muscle, Skeletal

2023

Trials

2 trial(s) available for lysine and isomethyleugenol

ArticleYear
Effects of genetic variation in H3K79 methylation regulatory genes on clinical blood pressure and blood pressure response to hydrochlorothiazide.
    Journal of translational medicine, 2012, Mar-22, Volume: 10

    Topics: Antihypertensive Agents; Black or African American; Blood Pressure; Cohort Studies; Demography; Female; Genetic Association Studies; Genotype; Histones; Humans; Hydrochlorothiazide; Lysine; Male; Methylation; Middle Aged; Polymorphism, Single Nucleotide; Treatment Outcome

2012
The association between progression of atherosclerosis and the methylated amino acids asymmetric dimethylarginine and trimethyllysine.
    PloS one, 2013, Volume: 8, Issue:5

    Topics: Adenosine; Aged; Arginine; Coronary Angiography; Coronary Artery Disease; Disease Progression; Ethionine; Female; Folic Acid; Follow-Up Studies; Humans; Lysine; Male; Methylation; Middle Aged; Treatment Outcome; Vitamin B 12; Vitamin B 6; Vitamin B Complex

2013

Other Studies

2332 other study(ies) available for lysine and isomethyleugenol

ArticleYear
Nuclear-magnetic-resonance-spectroscopic studies of the amino groups of insulin.
    European journal of biochemistry, 1977, Jun-15, Volume: 76, Issue:2

    Topics: Amines; Animals; Cattle; Chemical Phenomena; Chemistry; Hydrogen-Ion Concentration; Insulin; Lysine; Magnetic Resonance Spectroscopy; Methylation; Protein Conformation

1977
The formation and cleavage of lysinoalanine crosslinks.
    Advances in experimental medicine and biology, 1977, Volume: 86B

    Topics: Alanine; Chemical Phenomena; Chemistry; Hydrogen-Ion Concentration; Iodides; Keratins; Kinetics; Lysine; Methylation; Spectrophotometry, Ultraviolet; Temperature

1977
Inactivation of the ribosomal protein S1 in polyuridylate binding by reductive methylation of the lysyl-ammonium groups.
    Biochimica et biophysica acta, 1978, Dec-21, Volume: 521, Issue:2

    Topics: Hydrogen-Ion Concentration; Kinetics; Lysine; Methylation; Oxidation-Reduction; Poly U; Protein Binding; Ribosomal Proteins; RNA, Transfer

1978
Methylated amino acid residues of proteins of brain and other organs.
    Journal of neurochemistry, 1975, Volume: 24, Issue:5

    Topics: Amino Acids; Animals; Arginine; Brain Chemistry; Cell Nucleus; Cerebrosides; Growth; Histidine; Liver; Lysine; Methylation; Microsomes; Mitochondria; Mitochondria, Liver; Myelin Basic Protein; Protein Biosynthesis; Rabbits; Rats

1975
Methylases of myelin basic protein and histone in rat brain.
    Journal of neurochemistry, 1975, Volume: 24, Issue:5

    Topics: Animals; Arginine; Brain; Carbon Radioisotopes; Cattle; Chromatography, Ion Exchange; Histones; Humans; Liver; Lysine; Methylation; Methyltransferases; Myelin Basic Protein; Rabbits; Rats; Subcellular Fractions

1975
Evidence that trimethylation of iso-1-cytochrome c from Saccharomyces cerevisiae does not alter its functional properties [proceedings].
    Archives internationales de physiologie et de biochimie, 1976, Volume: 84, Issue:5

    Topics: Cytochrome c Group; Kinetics; Lysine; Methylation; Saccharomyces cerevisiae; Structure-Activity Relationship

1976
Protein-RNA interactions in the Escherichia coli ribosome: L24 protein-23 S RNA complex.
    Archives internationales de physiologie et de biochimie, 1976, Volume: 84, Issue:2

    Topics: Bacterial Proteins; Binding Sites; Escherichia coli; Lysine; Methylation; Nucleic Acid Conformation; Protein Binding; Ribonucleases; Ribosomal Proteins; Ribosomes; RNA, Bacterial; RNA, Ribosomal; Structure-Activity Relationship

1976
The nature and functions of specific immune response genes and their products.
    Advances in experimental medicine and biology, 1978, Volume: 98

    Topics: Alanine; Animals; Antibody Formation; Antibody Specificity; Cross Reactions; Genes, MHC Class II; Glutamates; Immunoglobulin Idiotypes; Lymphocytes; Lysine; Methylation; Mice; Peptides; Serum Albumin, Bovine; Tyrosine

1978
In vivo methylation of elongation factor Tu of Escherichia coli.
    Journal of biochemistry, 1979, Volume: 86, Issue:5

    Topics: Amino Acids; Escherichia coli; Immunodiffusion; Kinetics; Lysine; Methionine; Methylation; Molecular Weight; Peptide Elongation Factors

1979
Carnitine biosynthesis in Neurospora crassa: enzymatic conversion of lysine to epsilon-N-trimethyllysine.
    Journal of bacteriology, 1976, Volume: 126, Issue:3

    Topics: Carnitine; Cell-Free System; Choline; Enzyme Repression; Lysine; Methionine; Methylation; Methyltransferases; Neurospora; Neurospora crassa

1976
Preparation of radioactive epsilon-N-methylated lysines not involving elaborate organic synthesis.
    Analytical biochemistry, 1978, Oct-01, Volume: 90, Issue:1

    Topics: Carbon Radioisotopes; Chemical Phenomena; Chemistry; Formaldehyde; Isotope Labeling; Lysine; Methylation; Neurospora crassa

1978
The influence of amino acid substitutions on the conformational energy of cytochrome c.
    Biochemistry, 1975, Aug-12, Volume: 14, Issue:16

    Topics: Amino Acid Sequence; Amino Acids; Animals; Binding Sites; Calorimetry; Cytochrome c Group; Horses; Lysine; Methylation; Myocardium; Protein Binding; Protein Conformation; Thermodynamics; X-Ray Diffraction

1975
Cytochrome c-specific protein methylase III from Neurospora crassa.
    The Biochemical journal, 1977, Jul-01, Volume: 165, Issue:1

    Topics: Chymotrypsin; Cytochrome c Group; Histone-Lysine N-Methyltransferase; Kinetics; Lysine; Methylation; Neurospora; Neurospora crassa; Protein Methyltransferases; Subcellular Fractions

1977
Evidence that trimethylation of iso-I-cytochrome c from Saccharomyces cerevisiae affects interaction with the mitochondrion.
    FEBS letters, 1978, Feb-01, Volume: 86, Issue:1

    Topics: Animals; Binding Sites; Chemical Phenomena; Chemistry; Cytochrome c Group; Isoenzymes; Kinetics; Lysine; Methylation; Mitochondria; Mitochondria, Heart; Mitochondria, Liver; Protein Binding; Saccharomyces cerevisiae

1978
Calcium dependent activator protein of cyclic nucleotide phosphodiesterase from rat and bovine brain; presence of N-epsilon-trimethyllysine residue.
    Brain research, 1978, Jan-13, Volume: 139, Issue:2

    Topics: 2',3'-Cyclic-Nucleotide Phosphodiesterases; Animals; Brain Chemistry; Calcium; Cattle; Enzyme Activation; Lysine; Methylation; Nerve Tissue Proteins; Phosphoric Diester Hydrolases; Rats

1978
The cytochrome c oxidase binding site on cytochrome c. Differential chemical modification of lysine residues in free and oxidase-bound cytochrome c.
    The Journal of biological chemistry, 1978, Sep-10, Volume: 253, Issue:17

    Topics: Acetylation; Amino Acids; Anhydrides; Binding Sites; Cytochrome c Group; Electron Transport Complex IV; Formaldehyde; Lysine; Methylation; Oxidation-Reduction; Peptide Fragments; Protein Binding

1978
Proton-magnetic-resonance studies of the lysine residues of ribonuclease A.
    European journal of biochemistry, 1975, Volume: 54, Issue:1

    Topics: Binding Sites; Borohydrides; Formaldehyde; Histidine; Hydrogen-Ion Concentration; Lysine; Magnetic Resonance Spectroscopy; Methylation; Phosphates; Protein Binding; Protein Conformation; Protein Denaturation; Protons; Ribonucleases; Temperature

1975
Identification of N-methylated basic amino acids from human adult teeth.
    Journal of dental research, 1978, Volume: 57, Issue:1

    Topics: Adult; Arginine; Chromatography, Gas; Chromatography, Thin Layer; Humans; Lysine; Methylation; Tooth

1978
Displacement and aberrant methylation in vitro of H-1 histone in rat liver nuclei after half-saturation of chromatin with polycations.
    Proceedings of the National Academy of Sciences of the United States of America, 1978, Volume: 75, Issue:12

    Topics: Animals; Cations; Cell Nucleus; Chromatin; Histones; Lysine; Methylation; Methyltransferases; Polylysine; Protamines; Rats; S-Adenosylmethionine; Spermidine

1978
Genetics of ribosomal protein methylation in Escherichia coli. I. A mutant deficient in methylation of protein L11.
    Molecular & general genetics : MGG, 1977, Jul-20, Volume: 154, Issue:2

    Topics: Amino Acids; Bacterial Proteins; Escherichia coli; In Vitro Techniques; Lysine; Methylation; Mutation; Ribosomal Proteins; Ribosomes

1977
Temperature-dependent variation in the extent of methylation of ribosomal proteins L7 and L12 in Escherichia coli.
    Journal of bacteriology, 1978, Volume: 135, Issue:3

    Topics: Bacterial Proteins; Escherichia coli; Lysine; Methylation; Ribosomal Proteins; Temperature

1978
The methylation and demethylation of protein lysine residues.
    Methods in cell biology, 1978, Volume: 19

    Topics: Histone-Lysine N-Methyltransferase; Histones; Lysine; Methods; Methylation; Oxidoreductases, N-Demethylating; Protein Methyltransferases; Proteins

1978
Methods for the assessment of histone methylation.
    Methods in cell biology, 1978, Volume: 19

    Topics: Cell Nucleus; Histone-Lysine N-Methyltransferase; Histones; Lysine; Methods; Methylation; Protein Methyltransferases

1978
Reactivity of amino groups in various complexes of the peptide chain elongation factor EF-Tu from Escherichia coli. A new method of competitive labelling using reductive methylation.
    Journal of molecular biology, 1978, Sep-25, Volume: 124, Issue:3

    Topics: Amino Acids; Bacterial Proteins; Binding, Competitive; Escherichia coli; Lysine; Methods; Methylation; Peptide Elongation Factors; Protein Conformation

1978
Location of the site of methylation in elongation factor Tu.
    FEBS letters, 1979, Nov-15, Volume: 107, Issue:2

    Topics: Amino Acid Sequence; Escherichia coli; Lysine; Methylation; Peptide Elongation Factors; Peptide Fragments; Tritium; Trypsin

1979
Introduction of methyl groups from epsilon-N-methyllysine into the one-carbon pool.
    Biochemical and biophysical research communications, 1979, Jan-30, Volume: 86, Issue:2

    Topics: Animals; Betaine; Carnitine; Chickens; Choline; Liver; Lysine; Methylation; Tissue Distribution

1979
N epsilon-Methyl groups on the lysine residues in histones turn over independently of the polypeptide backbone.
    Hoppe-Seyler's Zeitschrift fur physiologische Chemie, 1979, Volume: 360, Issue:7

    Topics: Animals; Cats; Histones; Kidney; Kinetics; Lysine; Methionine; Methylation

1979
Post-synthetic modifications of nuclear proteins. High mobility group proteins are methylated.
    Biochemical and biophysical research communications, 1979, Aug-28, Volume: 89, Issue:4

    Topics: Amino Acids; Animals; Arginine; Cattle; Lysine; Methylation; Molecular Weight; Nucleoproteins; Thymus Gland

1979
Effect of modification on inhibitory amino acids on arginase activity.
    Biochemical medicine, 1978, Volume: 19, Issue:1

    Topics: Amino Acids; Animals; Arginase; Cattle; Humans; Keto Acids; Liver; Lysine; Maple Syrup Urine Disease; Methylation; Ornithine; Structure-Activity Relationship

1978
13C NMR studies of ribonuclease A methylated with [13C]Formaldehyde.
    The Journal of biological chemistry, 1979, Jun-10, Volume: 254, Issue:11

    Topics: Animals; Carbon Isotopes; Cattle; Formaldehyde; Kinetics; Lysine; Magnetic Resonance Spectroscopy; Methylation; Pancreas; Ribonucleases

1979
Ontogenetic changes in the content of methylated amino acids in rodent skeletal muscle.
    Experimental gerontology, 1977, Volume: 12, Issue:5-6

    Topics: Aging; Animals; Arginine; Cricetinae; Histidine; Lysine; Male; Methylation; Methylhistidines; Mice; Muscle Development; Muscles; Myosins; Rats

1977
Methylation of the lysine residues of monellin.
    Proceedings of the Society for Experimental Biology and Medicine. Society for Experimental Biology and Medicine (New York, N.Y.), 1978, Volume: 157, Issue:2

    Topics: Amino Acids; Chemical Phenomena; Chemistry; Chromatography, Gel; Electrophoresis, Polyacrylamide Gel; Lysine; Methylation; Peptide Fragments; Plant Proteins; Sweetening Agents; Taste

1978
[Preparation and characteristics of carboxymethylated lysozyme derivatives].
    Biokhimiia (Moscow, Russia), 1978, Volume: 43, Issue:7

    Topics: Chromatography, Ion Exchange; Histidine; Iodoacetates; Lysine; Methylation; Muramidase; Osmolar Concentration

1978
Studies on the uptake of N-E-3H-trimethyl-L-lysine in the organs of mice with NK/Ly ascites tumors.
    Acta biochimica et biophysica; Academiae Scientiarum Hungaricae, 1978, Volume: 13, Issue:1-2

    Topics: Animals; Ascites; Biological Transport; Chromatography, Thin Layer; Extracellular Space; Female; Lysine; Methylation; Mice; Neoplasms, Experimental; Tissue Distribution

1978
Relationship between rates of methylation and synthesis of heart protein.
    The Journal of biological chemistry, 1979, Feb-10, Volume: 254, Issue:3

    Topics: Animals; Biological Transport; Cycloheximide; Histidine; Hypophysectomy; Kinetics; Lysine; Male; Methionine; Methylation; Muscle Proteins; Myocardium; Protein Biosynthesis; Rats

1979
Synthesis and degradation of methylated proteins of mouse organs: correlation with protein synthesis and degradation.
    Metabolism: clinical and experimental, 1976, Volume: 25, Issue:8

    Topics: Animals; Arginine; Brain; Kidney; Liver; Lysine; Male; Methionine; Methylation; Methyltransferases; Mice; Protein Biosynthesis; Proteins; Puromycin; Spleen; Subcellular Fractions

1976
Methylation of the ribosomal proteins in Escherichia coli. Nature and stoichiometry of the methylated amino acids in 50S ribosomal proteins.
    Biochemistry, 1975, Feb-11, Volume: 14, Issue:3

    Topics: Amino Acids; Bacterial Proteins; Electrophoresis, Paper; Escherichia coli; Lysine; Methionine; Methylation; Molecular Weight; Protein Binding; Ribosomes

1975
Methylated amino acids in the proteins of bacterial and mammalian cells.
    Archives of biochemistry and biophysics, 1975, Volume: 169, Issue:2

    Topics: Amino Acids; Arginine; Bacterial Proteins; Cells, Cultured; Chromatography, Thin Layer; Escherichia coli; Fibroblasts; Histones; Lysine; Methionine; Methylation; Proteins; Ribosomal Proteins; Subcellular Fractions

1975
Improved method for the separation of lysine from N-epsilon-monomethyllysine in plasma using cation-exchange chromatography.
    Journal of chromatography, 1975, Jan-29, Volume: 104, Issue:1

    Topics: Animals; Chromatography, Ion Exchange; Lysine; Methods; Methylation; Sheep; Solvents

1975
[Column chromatographic separation of N-B,N-G-dimethyl arginine, N-G,N'G-dimethyl arginine, N-G-monomethyl arginine, N-epsilon-monomethyl lysine, N-epsilon-dimethyl lysine and N-epsilon-trimethyl lysine].
    Journal of chromatography, 1975, Apr-16, Volume: 107, Issue:2

    Topics: Arginine; Chromatography; Histidine; Lysine; Methylation; Ornithine

1975
Kinetics of histone methylation in vivo and its relation to the cell cycle in Ehrlich ascites tumor cells.
    European journal of biochemistry, 1975, Feb-21, Volume: 51, Issue:2

    Topics: Amino Acids; Animals; Carcinoma, Ehrlich Tumor; Cell Division; Electrophoresis, Polyacrylamide Gel; Histones; Kinetics; Lysine; Male; Methylation; Mice; Time Factors

1975
Tissue-specific biosynthesis of epsilon-N-monomethyllysine and epsilon-N-trimethyllysine in skeletal and cardiac muscle myosin: a model for the cell-free study of post-translational amino acid modifications in proteins.
    Journal of molecular biology, 1975, May-25, Volume: 94, Issue:3

    Topics: Animals; Chick Embryo; Chickens; Cytosol; Lysine; Methylation; Methyltransferases; Muscles; Myocardium; Myosins; Organ Specificity; Polyribosomes; Protein Biosynthesis; S-Adenosylmethionine

1975
Sites of in vivo histone methylation in developing trout testis.
    The Journal of biological chemistry, 1975, Nov-25, Volume: 250, Issue:22

    Topics: Alanine; Amino Acid Sequence; Animals; Histones; Lysine; Male; Methylation; Peptide Fragments; Spermatogenesis; Testis; Trout; Trypsin

1975
Histone methylation. Its occurrence in different cell types and relation to histone H4 metabolism in developing trout testis.
    The Journal of biological chemistry, 1975, Nov-25, Volume: 250, Issue:22

    Topics: Animals; Electrophoresis, Starch Gel; Histones; Lysine; Male; Methionine; Methylation; Testis; Trout

1975
Methylated basic amino acid composition of histones from the various organs from the rat.
    The Journal of biological chemistry, 1975, Nov-10, Volume: 250, Issue:21

    Topics: Amino Acids; Animals; Arginine; Brain; Brain Chemistry; Cerebellum; Histidine; Histones; Kidney; Liver; Lysine; Methylation; Rats; Thymus Gland

1975
Role of the lysine and arginine residues of vitellogenin in high affinity binding to vitellogenin receptors in locust oocyte membranes.
    Biochimica et biophysica acta, 1992, Jan-13, Volume: 1133, Issue:2

    Topics: Acetylation; Animals; Arginine; Cell Membrane; Disulfides; Egg Proteins; Grasshoppers; Lysine; Maleic Anhydrides; Methylation; Oocytes; Oxidation-Reduction; Propionates; Receptors, Cell Surface; Sulfhydryl Compounds; Vitellogenins

1992
Methylations of 70,000-Da heat shock proteins in 3T3 cells: alterations by arsenite treatment, by different stages of growth and by virus transformation.
    Archives of biochemistry and biophysics, 1992, Aug-15, Volume: 297, Issue:1

    Topics: 3T3 Cells; Animals; Arginine; Arsenic; Arsenites; Avian Sarcoma Viruses; Cell Division; Cell Transformation, Viral; Chromatography, Ion Exchange; Electrophoresis, Gel, Two-Dimensional; Heat-Shock Proteins; Lysine; Methionine; Methylation; Mice; Molecular Weight; omega-N-Methylarginine

1992
In vivo and in vitro methylation of lysine residues of Euglena gracilis histone H1.
    Journal of protein chemistry, 1992, Volume: 11, Issue:3

    Topics: Animals; Chromatography, Gel; Chromatography, High Pressure Liquid; Electrophoresis, Gel, Two-Dimensional; Electrophoresis, Polyacrylamide Gel; Euglena gracilis; Histones; Lysine; Methylation; Protein Processing, Post-Translational; Substrate Specificity

1992
The conformation of apolipoprotein A-I in discoidal and spherical recombinant high density lipoprotein particles. 13C NMR studies of lysine ionization behavior.
    The Journal of biological chemistry, 1992, Dec-25, Volume: 267, Issue:36

    Topics: Amino Acid Sequence; Apolipoprotein A-I; Carbon Isotopes; Densitometry; Humans; Hydrogen-Ion Concentration; Kinetics; Lipoproteins, HDL; Lysine; Magnetic Resonance Spectroscopy; Methylation; Protein Conformation; Protein Structure, Secondary; Recombinant Proteins

1992
Helix formation in methylated copolymers of lysine and alanine.
    Biopolymers, 1992, Volume: 32, Issue:5

    Topics: Alanine; Lysine; Methylation; Molecular Weight; Osmolar Concentration; Peptides; Protein Conformation

1992
Methylated lysine in storage body protein of sheep with hereditary ceroid-lipofuscinosis.
    Biochimica et biophysica acta, 1992, Feb-14, Volume: 1138, Issue:2

    Topics: Amino Acids; Animals; Brain; Chromatography, Ion Exchange; Chromatography, Thin Layer; Disease Models, Animal; Liver; Lysine; Methylation; Microscopy, Electron; Neuronal Ceroid-Lipofuscinoses; Pancreatin; Proteins; Sheep; Spectrometry, Mass, Fast Atom Bombardment

1992
Further investigations regarding the role of trimethyllysine for cytochrome c uptake into mitochondria.
    The International journal of biochemistry, 1991, Volume: 23, Issue:7-8

    Topics: Animals; Arginine; Base Sequence; Cloning, Molecular; Codon; Cytochrome c Group; Cytochromes c; Lysine; Methylation; Mitochondria; Mitochondria, Liver; Molecular Sequence Data; Mutagenesis, Site-Directed; Polymerase Chain Reaction; Protein Biosynthesis; Rats; Restriction Mapping; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins; Structure-Activity Relationship; Transcription, Genetic

1991
A key amino acid determining G3m(b) allotypic markers.
    Jinrui idengaku zasshi. The Japanese journal of human genetics, 1991, Volume: 36, Issue:2

    Topics: Amino Acid Sequence; Amino Acids; Chromatography, High Pressure Liquid; Epitopes; Humans; Immunoglobulin Fc Fragments; Immunoglobulin G; Immunoglobulin Gm Allotypes; Lysine; Methylation; Molecular Sequence Data; Protein Conformation; Serine

1991
Involvement of lysine residues 289 and 291 of the cAMP-responsive element-binding protein in the recognition of the cAMP-responsive element.
    The Journal of biological chemistry, 1991, Nov-15, Volume: 266, Issue:32

    Topics: Amino Acid Sequence; Animals; Base Sequence; Binding Sites; Cell Line; Cyclic AMP Response Element-Binding Protein; DNA-Binding Proteins; DNA, Neoplasm; Gene Library; Humans; Infant, Newborn; Leucine Zippers; Lysine; Macromolecular Substances; Methylation; Models, Structural; Molecular Sequence Data; Mutagenesis, Site-Directed; PC12 Cells; Polymerase Chain Reaction; Protein Conformation; Restriction Mapping; Sequence Homology, Nucleic Acid

1991
Juvenile ceroid lipofuscinosis. Evidence for methylated lysine in neural storage body protein.
    The American journal of pathology, 1991, Volume: 138, Issue:2

    Topics: Adult; Female; Fluorescence; Humans; Lysine; Male; Methylation; Microscopy, Fluorescence; Nerve Tissue Proteins; Neuronal Ceroid-Lipofuscinoses; Reference Values; Retina

1991
Thermodynamics of ligand binding and denaturation for His64 mutants of tissue plasminogen activator kringle-2 domain.
    Proteins, 1991, Volume: 11, Issue:1

    Topics: Binding Sites; Calorimetry; Circular Dichroism; Dialysis; Hydrogen-Ion Concentration; Lysine; Methylation; Models, Molecular; Mutagenesis, Site-Directed; Protein Denaturation; Thermodynamics; Tissue Plasminogen Activator

1991
Multiple ubiquitination of calmodulin results in one polyubiquitin chain linked to calmodulin.
    FEBS letters, 1990, Oct-01, Volume: 271, Issue:1-2

    Topics: Amino Acids; Animals; Blotting, Western; Calmodulin; Cattle; Cross-Linking Reagents; Lysine; Male; Methylation; Peptide Synthases; Reticulocytes; Substrate Specificity; Testis; Ubiquitin-Activating Enzymes; Ubiquitin-Protein Ligases; Ubiquitins

1990
IgG rheumatoid factors and staphylococcal protein A bind to a common molecular site on IgG.
    The Journal of experimental medicine, 1985, Dec-01, Volume: 162, Issue:6

    Topics: Arthritis, Rheumatoid; Binding Sites, Antibody; Binding, Competitive; Epitopes; Histidine; Humans; Hydrogen-Ion Concentration; Immunoglobulin G; Lysine; Methylation; Protein Conformation; Rheumatoid Factor; Staphylococcal Protein A

1985
Activation energy of sulfate ion transport across methylated human erythrocyte membranes.
    FEBS letters, 1988, Aug-15, Volume: 236, Issue:1

    Topics: Biological Transport, Active; Borohydrides; Erythrocyte Membrane; Formaldehyde; Humans; Ion Channels; Lysine; Methylation; Sulfates; Temperature

1988
In vivo mutations of calmodulin: a mutant Paramecium with altered ion current regulation has an isoleucine-to-threonine change at residue 136 and an altered methylation state at lysine residue 115.
    Proceedings of the National Academy of Sciences of the United States of America, 1989, Volume: 86, Issue:19

    Topics: Amino Acid Sequence; Animals; Calmodulin; Enzyme Activation; Ion Channels; Isoleucine; Kinetics; Lysine; Methylation; Molecular Sequence Data; Mutation; Myosin-Light-Chain Kinase; Paramecium; Threonine

1989
Comparison of the Fc fragment from a human IgG1 and its CH2, pFc', and tFc' subfragments. A study using reductive methylation and 13C NMR.
    Biochemistry, 1989, Apr-18, Volume: 28, Issue:8

    Topics: Humans; Immunoglobulin Constant Regions; Immunoglobulin Fc Fragments; Immunoglobulin Fragments; Immunoglobulin G; Lysine; Magnetic Resonance Spectroscopy; Methylation; Oxidation-Reduction

1989
Role of lysine methylation in the activities of elongation factor 1 alpha.
    Archives of biochemistry and biophysics, 1989, Volume: 275, Issue:2

    Topics: Amino Acyl-tRNA Synthetases; Kinetics; Lysine; Methylation; Mucor; Peptide Elongation Factor 1; Peptide Elongation Factors; Ribonucleoproteins; RNA, Transfer, Phe; Saccharomyces cerevisiae; Spores, Fungal

1989
13C NMR of methylated lysines of fd gene 5 protein: evidence for a conformational change involving lysine 24 upon binding of a negatively charged lanthanide chelate.
    Biochemistry, 1989, Sep-19, Volume: 28, Issue:19

    Topics: Bacteriophages; Binding, Competitive; Chelating Agents; Computer Simulation; DNA-Binding Proteins; DNA, Viral; Lanthanum; Lysine; Magnetic Resonance Spectroscopy; Methylation; Models, Molecular; Oligonucleotide Probes; Protein Conformation; Viral Proteins

1989
Importance of amino acids on vasopressin-stimulated water flow.
    The Journal of clinical investigation, 1985, Volume: 76, Issue:2

    Topics: Amino Acids; Animals; Bufonidae; Cyclic AMP; Diuresis; Drug Synergism; Female; Glutamates; Glutamic Acid; Histidine; Lysine; Methylation; Structure-Activity Relationship; Theophylline; Urinary Bladder; Vasopressins; Zinc

1985
Involvement of lysine residues in the binding of hGH and bGH to somatotropic receptors.
    FEBS letters, 1985, Jan-28, Volume: 180, Issue:2

    Topics: Amino Acid Sequence; Animals; Cattle; Female; Growth Hormone; Humans; Liver; Lysine; Methylation; Pregnancy; Rabbits; Radioligand Assay; Receptors, Cell Surface; Receptors, Somatotropin; Species Specificity; Structure-Activity Relationship

1985
Involvement of lysine residues in the binding of ovine prolactin and human growth hormone to lactogenic receptors.
    FEBS letters, 1985, Oct-28, Volume: 191, Issue:2

    Topics: Acetaldehyde; Animals; Borohydrides; Chemical Phenomena; Chemistry; Female; Formaldehyde; Growth Hormone; Guanidines; Imidoesters; Lysine; Methylation; Prolactin; Rabbits; Radioligand Assay; Receptors, Cell Surface; Receptors, Prolactin; Structure-Activity Relationship

1985
Trimethyllysine and protein function. Effect of methylation and mutagenesis of lysine 115 of calmodulin on NAD kinase activation.
    The Journal of biological chemistry, 1986, Feb-05, Volume: 261, Issue:4

    Topics: Amino Acid Sequence; Calmodulin; Chlamydomonas; Dictyostelium; Enzyme Activation; Genes, Synthetic; Lysine; Methylation; Methyltransferases; Phosphotransferases; Phosphotransferases (Alcohol Group Acceptor); Protein Processing, Post-Translational; Recombinant Proteins

1986
Specific chemical modifications of link protein and their effect on binding to hyaluronate and cartilage proteoglycan.
    Biochimica et biophysica acta, 1986, Mar-19, Volume: 881, Issue:1

    Topics: Acetylation; Animals; Arginine; Cartilage, Articular; Cattle; Chromatography, Gel; Diethyl Pyrocarbonate; Extracellular Matrix Proteins; Female; Histidine; Hyaluronic Acid; Imidazoles; Lysine; Male; Methylation; Proteins; Proteoglycans; Tryptophan; Tyrosine

1986
Effect of exogenous histone H5 on integration of histone H1 in rat liver chromatin. Correlations with aberrant epsilon-N-methylation of histone H1.
    Biochimica et biophysica acta, 1986, Jun-20, Volume: 867, Issue:3

    Topics: Animals; Binding Sites; Chickens; Chromatin; Histones; Liver; Lysine; Methylation; Methyltransferases; Nucleosomes; Polylysine; Rats; S-Adenosylmethionine; Salmine

1986
The role of Lys 394 in microtubule assembly.
    Annals of the New York Academy of Sciences, 1986, Volume: 466

    Topics: Amino Acids; Animals; Brain; Cattle; Cyanogen Bromide; Ethyldimethylaminopropyl Carbodiimide; Kinetics; Lysine; Methylation; Microtubule-Associated Proteins; Microtubules; Models, Molecular; Peptide Fragments; Protein Conformation

1986
Changes of lysine reactivities of actin in complex with DNAase I.
    Biochimica et biophysica acta, 1986, Oct-17, Volume: 873, Issue:3

    Topics: Actins; Deoxyribonuclease I; Electrophoresis, Polyacrylamide Gel; Lysine; Methylation; Oxidation-Reduction; Protein Binding

1986
Lysine-containing DNA-binding regions on the surface of the histone octamer in the nucleosome core particle.
    European journal of biochemistry, 1986, Oct-01, Volume: 160, Issue:1

    Topics: Amino Acids; Animals; Binding Sites; Chickens; Chromatography, High Pressure Liquid; DNA-Binding Proteins; Histones; Lysine; Methylation; Nucleosomes; Oxidation-Reduction; Peptide Mapping; Trypsin

1986
Thin-layer chromatography of some methylated amino acids with aqueous salt solutions used as eluents.
    Journal of chromatography, 1986, Sep-19, Volume: 365

    Topics: Acetates; Acetic Acid; Amino Acids; Chemical Phenomena; Chemistry, Physical; Chromatography, Thin Layer; Lysine; Methylation; Sodium Chloride; Solutions

1986
Methylation in vivo of elongation factor EF-Tu at lysine-56 decreases the rate of tRNA-dependent GTP hydrolysis.
    European journal of biochemistry, 1986, Nov-03, Volume: 160, Issue:3

    Topics: Escherichia coli; Ethylmaleimide; Guanosine Diphosphate; Guanosine Triphosphate; Hydrolysis; Kinetics; Lysine; Methylation; Peptide Elongation Factor Tu; RNA, Transfer

1986
Purification and properties of calmodulin-lysine N-methyltransferase from rat brain cytosol.
    Journal of neurochemistry, 1987, Volume: 48, Issue:4

    Topics: Animals; Brain; Calmodulin; Chemical Precipitation; Chromatography; Chromatography, High Pressure Liquid; Cytosol; Electrophoresis, Polyacrylamide Gel; Lysine; Methylation; Methyltransferases; Molecular Weight; Octopodiformes; Rats; Rats, Inbred Strains; Substrate Specificity

1987
O6-methylguanine-DNA methyltransferase and alkylation of liver DNA in mice exposed to dimethylnitrosamine during dietary deficiency of essential amino acids.
    Mutation research, 1987, Volume: 183, Issue:3

    Topics: Amino Acids; Animals; Cysteine; Diet; Dimethylnitrosamine; DNA; DNA Damage; DNA Repair; Liver; Lysine; Methionine; Methylation; Methyltransferases; Mice; O(6)-Methylguanine-DNA Methyltransferase

1987
Characterization of the chicken oocyte receptor for low and very low density lipoproteins.
    The Journal of biological chemistry, 1987, Dec-15, Volume: 262, Issue:35

    Topics: Animals; Apolipoproteins B; Binding, Competitive; Cattle; Chickens; Edetic Acid; Glucosides; Humans; Lipoproteins, HDL; Lysine; Methylation; Molecular Weight; Oocytes; Pronase; Receptors, LDL; Solubility; Suramin

1987
Reductive methylation of lysine residues in acidic fibroblast growth factor: effect on mitogenic activity and heparin affinity.
    Biochemistry, 1988, Jan-26, Volume: 27, Issue:2

    Topics: Amino Acid Sequence; Animals; Borohydrides; Brain; Cattle; Cell Division; Cells, Cultured; Fibroblast Growth Factors; Formaldehyde; Heparin; Hydroxylamine; Hydroxylamines; Indicators and Reagents; Lysine; Methylation; Mice; Mice, Inbred BALB C; Molecular Sequence Data; Peptide Mapping

1988
Methylation of Drosophila histones at proline, lysine, and arginine residues during heat shock.
    The Journal of biological chemistry, 1988, Apr-05, Volume: 263, Issue:10

    Topics: Amino Acids; Animals; Arginine; Arsenic; Arsenites; Cell Line; Drosophila; Histones; Hot Temperature; Lysine; Methylation; Proline; Sodium Compounds

1988
Site-specific methylation of a strategic lysyl residue in aspartate aminotransferase.
    The Journal of biological chemistry, 1988, May-25, Volume: 263, Issue:15

    Topics: Amino Acid Sequence; Animals; Aspartate Aminotransferases; Circular Dichroism; Isoenzymes; Lysine; Methylation; Myocardium; Oxidation-Reduction; Peptide Fragments; Peptide Mapping; Protein Conformation; Swine; Trypsin

1988
Modification of calmodulin on Lys-75 by carbamoylating nitrosoureas.
    The Journal of biological chemistry, 1988, Aug-15, Volume: 263, Issue:23

    Topics: Amino Acid Sequence; Animals; Binding Sites; Calcium; Calmodulin; Carbamates; Cattle; Hydrogen-Ion Concentration; Imidazoles; Lomustine; Lysine; Methylation; Nitrosourea Compounds; Trypsin

1988
Determination of methylated amino acids in human serum by high-performance liquid chromatography.
    Journal of chromatography, 1988, May-25, Volume: 440

    Topics: Amino Acids; Chromatography, High Pressure Liquid; Humans; Hyperthyroidism; Lysine; Methylation; o-Phthalaldehyde

1988
A 13C NMR characterization of lysine residues in apolipoprotein B and their role in binding to the low density lipoprotein receptor.
    The Journal of biological chemistry, 1988, Sep-25, Volume: 263, Issue:27

    Topics: Apolipoprotein B-100; Apolipoproteins B; Chemical Phenomena; Chemistry; Circular Dichroism; Electrophoresis, Polyacrylamide Gel; Ferricyanides; Formaldehyde; Humans; Hydrogen-Ion Concentration; Lipoproteins, LDL; Lysine; Magnetic Resonance Spectroscopy; Methylation; Peptide Fragments; Receptors, LDL; Structure-Activity Relationship; Thrombin

1988
Reductive methylation and 13C NMR studies of the lysyl residues of fd gene 5 protein. Lysines 24, 46, and 69 may be involved in nucleic acid binding.
    The Journal of biological chemistry, 1988, Dec-15, Volume: 263, Issue:35

    Topics: Amino Acid Sequence; DNA; DNA-Binding Proteins; Hydrogen-Ion Concentration; Lysine; Magnetic Resonance Spectroscopy; Methylation; Molecular Sequence Data; Peptide Mapping; Viral Proteins

1988
Reductive methylation of lysine residues of botulinum neurotoxin types A and B.
    Molecular and cellular biochemistry, 1988, Volume: 83, Issue:1

    Topics: Animals; Botulinum Toxins; Immunodiffusion; Lethal Dose 50; Lysine; Methylation; Mice; Molecular Weight; Neurotoxins; Oxidation-Reduction; Serotyping; Structure-Activity Relationship

1988
High-affinity association and degradation of 125I-labelled low density lipoproteins by human hepatocytes in primary culture.
    FEBS letters, 1985, Apr-08, Volume: 183, Issue:1

    Topics: Adult; Cells, Cultured; Fibroblasts; Humans; Lipoproteins, LDL; Liver; Lysine; Methylation; Middle Aged; Receptors, LDL

1985
Accelerated protein turnover in the skeletal muscle of dystrophic mice.
    Biochimica et biophysica acta, 1985, Nov-22, Volume: 843, Issue:1-2

    Topics: Actins; Animals; Arginine; Chickens; Lysine; Male; Methylation; Methylhistidines; Mice; Mice, Inbred C57BL; Muscle Proteins; Muscles; Muscular Dystrophy, Animal; Myofibrils; Myosins

1985
Methylation of the active-site lysine of rhodopsin.
    Biochemistry, 1985, Dec-31, Volume: 24, Issue:27

    Topics: Animals; Binding Sites; Cattle; Formaldehyde; Lysine; Methylation; Photoreceptor Cells; Retinal Pigments; Retinaldehyde; Rhodopsin; Rod Cell Outer Segment; Spectrophotometry

1985
Methylation of basic residues in structural proteins.
    Mechanisms of ageing and development, 1973, Volume: 1, Issue:5

    Topics: Amino Acids; Arginase; Arginine; Bacterial Proteins; Carboxy-Lyases; Escherichia coli; Euglena gracilis; Histidine; Histidine Ammonia-Lyase; Lysine; Methionine; Methylation; Methylhistidines; Plant Proteins; Protein Conformation; Ribosomes

1973
Chromatography of transforming deoxyribonucleic acid on methylated albumin and by gel filtration.
    The Biochemical journal, 1974, Volume: 137, Issue:3

    Topics: Adenine; Albumins; Bacillus subtilis; Centrifugation, Density Gradient; Chromatography; Chromatography, Gel; DNA, Bacterial; Histidine; Lysine; Methylation; Molecular Weight; Temperature; Transformation, Genetic; Ultrafiltration

1974
Epsilon-N-methyl lysine in myosin.
    Nature, 1969, Aug-23, Volume: 223, Issue:5208

    Topics: Adenosine Triphosphatases; Animals; Chromatography; Lysine; Methylation; Muscle Proteins; Rabbits

1969
Role of lysine and -N-trimethyllysine in carnitine biosynthesis. I. Studies in Neurospora crassa.
    The Journal of biological chemistry, 1973, Mar-25, Volume: 248, Issue:6

    Topics: Betaine; Butyrates; Carbon Isotopes; Carnitine; Chromatography, Ion Exchange; Culture Media; Hydroxylation; Lysine; Methane; Methionine; Methylation; Models, Chemical; Mutation; Neurospora; Neurospora crassa; Nitrogen Isotopes; Structure-Activity Relationship; Tritium

1973
[Effect of a prolonged treatment by S-carboxy-methyl-cysteine on the disturbances of the pulmonary protein synthesis induced by sulfur dioxide in the rat].
    Comptes rendus des seances de la Societe de biologie et de ses filiales, 1974, Volume: 168, Issue:1

    Topics: Administration, Oral; Animals; Carbon Radioisotopes; Carboxylic Acids; Cysteine; Lung; Lysine; Methylation; Mucus; Protein Biosynthesis; Rats; Respiratory System; Sulfur Dioxide; Trachea

1974
Comparison of the morphology, fermentation, assimilation, lipid content and mannans of rough and smooth strains of Saccharomyces cerevisiae.
    Journal of general microbiology, 1971, Volume: 65, Issue:2

    Topics: Fermentation; Genetics, Microbial; Glycosides; Lipids; Lysine; Methylation; Periodic Acid; Polysaccharides; Saccharomyces

1971
Association of polypeptides with ribonucleic acid. I. Effect of charge of the polypeptide and immune status of animals.
    Journal of immunology (Baltimore, Md. : 1950), 1971, Volume: 107, Issue:2

    Topics: Alanine; Animals; Antigens; Ascitic Fluid; Bone Marrow; Bone Marrow Cells; Carbon Isotopes; Cattle; Centrifugation, Density Gradient; Chromatography; Female; Glutamates; Iodine Isotopes; Lymph Nodes; Lysine; Macrophages; Male; Methylation; Molecular Weight; Peptides; Rabbits; RNA; Serum Albumin, Bovine; Silicon Dioxide; Spleen; Testis; Tyrosine

1971
Uptake of label into methylated amino acids from rat tissue histones after in vivo administration of (Me- 14 C)methionine.
    Biochimica et biophysica acta, 1971, May-13, Volume: 238, Issue:2

    Topics: Amino Acids; Animals; Arginine; Carbon Isotopes; Carcinoma, Hepatocellular; Chromatography; Histidine; Histones; Liver; Liver Neoplasms; Lysine; Male; Methionine; Methylation; Neoplasms, Experimental; Rats; Thymus Gland; Time Factors

1971
The effects of NaCl on the amino acid acceptor activity of rat liver tRNA.
    Archives of biochemistry and biophysics, 1971, Volume: 145, Issue:1

    Topics: Acylation; Amino Acyl-tRNA Synthetases; Animals; Carbon Isotopes; Chromatography; Chromatography, DEAE-Cellulose; Kinetics; Leucine; Liver; Lysine; Male; Methylation; Phenylalanine; Phosphates; Rats; Rats, Inbred Strains; RNA, Transfer; Serum Albumin; Silicon Dioxide; Sodium; Sodium Chloride; Tritium; Valine

1971
Isolation of a lysine transfer ribonucleic acid species from Bacillus subtilis by use of chemical modification.
    Biochimica et biophysica acta, 1972, Jun-22, Volume: 272, Issue:1

    Topics: Acylation; Bacillus subtilis; Benzoates; Chromatography; Chromatography, DEAE-Cellulose; Iodine; Lysine; Methods; Methylation; Oxidation-Reduction; RNA, Bacterial; RNA, Transfer; Serum Albumin; Silicon Dioxide; Sulfites; Tritium

1972
In vivo turnover and distribution of radio-N-methyl in arginine-rich histones from rat tissues.
    Archives of biochemistry and biophysics, 1972, Volume: 152, Issue:2

    Topics: Animals; Arginine; Carbon Isotopes; Carcinoma, Hepatocellular; Chromatography, Ion Exchange; Histones; Kinetics; Liver; Liver Neoplasms; Lysine; Male; Methionine; Methylation; Neoplasms, Experimental; Rats; Spleen

1972
Affinity labeling of Escherichia coli B deoxyribonucleic acid dependent ribonucleic acid polymerase.
    Biochemistry, 1972, Nov-21, Volume: 11, Issue:24

    Topics: Aldehydes; Binding Sites; Chromatography, Paper; Chromatography, Thin Layer; DNA-Directed RNA Polymerases; Electrophoresis, Disc; Escherichia coli; Inosine; Lysine; Macromolecular Substances; Methylation; Oxidation-Reduction; Periodic Acid; Pronase; Protein Binding; Protein Denaturation; Sulfides; Sulfur; Sulfur Isotopes; Tritium; Urea

1972
Structure and activity of methylated horse liver alcohol dehydrogenase.
    Biochemistry, 1974, Jan-29, Volume: 13, Issue:3

    Topics: Alcohol Oxidoreductases; Amino Acids; Animals; Borohydrides; Chemical Phenomena; Chemistry; Chromatography, Gel; Drug Stability; Electrophoresis, Polyacrylamide Gel; Formaldehyde; Horses; Hot Temperature; Liver; Lysine; Methylation; NAD; Optical Rotatory Dispersion; Protein Conformation; Sodium; Sodium Dodecyl Sulfate; Spectrophotometry, Ultraviolet; Structure-Activity Relationship; Sulfhydryl Reagents; Ultracentrifugation

1974
Effects of carcinogens and other agents on histone methylation in rat liver nuclei by endogenous histone lysine methyltransferase.
    Cancer research, 1974, Volume: 34, Issue:6

    Topics: Adenosine; Animals; Azo Compounds; Benz(a)Anthracenes; Carbon Radioisotopes; Carcinogens; Cell Nucleus; Dimethylformamide; Ethionine; Fluorenes; Histones; Homocysteine; Liver; Lysine; Mesylates; Methylation; Methyltransferases; Nitrosamines; Nitrosoguanidines; Nitrosourea Compounds; Pyrimidines; Pyrroles; Rats; Ribonucleosides; S-Adenosylmethionine

1974
The carbohydrate moiety of sea cucumber (Thyone briareus) gelatin.
    Carbohydrate research, 1972, Volume: 25, Issue:2

    Topics: Animals; Binding Sites; Carbohydrates; Chromatography; Chromatography, Gas; Chromatography, Gel; Collagen; Dinitrophenols; Echinodermata; Electrophoresis, Paper; Galactose; Gelatin; Glucose; Glycopeptides; Hydrogen-Ion Concentration; Hydrolysis; Lysine; Methylation; Oxidation-Reduction; Periodic Acid; Pronase; Protein Binding; Spectrophotometry; Temperature; Time Factors; Trypsin

1972
Tritium labeling of luteinizing hormone by reductive methylation.
    Biochimica et biophysica acta, 1974, Nov-05, Volume: 371, Issue:1

    Topics: Amino Acids; Animals; Biological Assay; Borohydrides; Cattle; Cyclic AMP; Female; Injections, Intravenous; Isotope Labeling; Kinetics; Luteinizing Hormone; Lysine; Male; Methylation; Oxidation-Reduction; Rats; Sheep; Testis; Testosterone; Time Factors; Tritium

1974
Neurophysin methylation in extracts of bovine posterior pituitary gland: hormone binding ability.
    FEBS letters, 1974, Dec-15, Volume: 49, Issue:2

    Topics: Animals; Binding Sites; Carbon Radioisotopes; Cattle; Chromatography, Affinity; Chromatography, Gel; Electrophoresis, Polyacrylamide Gel; Hydrogen-Ion Concentration; Kinetics; Lysine; Methylation; Molecular Weight; Neurophysins; Pituitary Gland, Posterior; Protein Binding; Receptors, Cell Surface; S-Adenosylmethionine; Vasopressins

1974
In vivo methylation and turnover of rat brain histones.
    Journal of neurochemistry, 1974, Volume: 23, Issue:3

    Topics: Aging; Amino Acids; Animals; Animals, Newborn; Brain; Brain Chemistry; Carbon Radioisotopes; Cell Nucleus; Chromatography, Gel; Chromatography, Ion Exchange; Cytosol; Electrophoresis, Polyacrylamide Gel; Half-Life; Histones; Lysine; Male; Methionine; Methylation; Microsomes; Mitochondria; Nerve Tissue Proteins; Rats; Regression Analysis; Time Factors; Tritium

1974
The effect of epsilon-N-DL-trimethyl-lysine on human lymphocyte cultures.
    Experimentelle Pathologie, 1974, Volume: 9, Issue:5-6

    Topics: Antibody Formation; Autoradiography; Cells, Cultured; DNA; Humans; In Vitro Techniques; Lectins; Lymphocyte Activation; Lymphocytes; Lysine; Methylation; Microscopy, Electron; Stimulation, Chemical

1974
Localization of chromatin proteins within DNA grooves by methylation of chromatin with dimethyl sulphate.
    Molecular biology reports, 1974, Volume: 1, Issue:7

    Topics: Animals; Binding Sites; Cattle; Chromatin; Chromatography, Ion Exchange; Coliphages; Dactinomycin; DNA; DNA Viruses; DNA, Single-Stranded; DNA, Viral; Histones; Kinetics; Lysine; Male; Methylation; Molecular Weight; Nucleic Acid Conformation; Nucleic Acid Denaturation; Nucleoproteins; Peptides; Protamines; Protein Binding; Protein Conformation; Salmon; Spectrophotometry, Ultraviolet; Spermatozoa; Sulfuric Acids; Thymus Gland; Tritium; Urea

1974
Bovine erythrocyte superoxide dismutase. Isolation and characterization of tryptic, cyanogen bromide, and maleylated tryptic peptides.
    The Journal of biological chemistry, 1974, Nov-25, Volume: 249, Issue:22

    Topics: Amino Acid Sequence; Amino Acids; Animals; Binding Sites; Cattle; Chromatography, DEAE-Cellulose; Chromatography, Gel; Chromatography, Ion Exchange; Chromatography, Paper; Chymotrypsin; Cyanogen Bromide; Electrophoresis, Paper; Erythrocytes; Hydrogen-Ion Concentration; Hydrolysis; Lysine; Macromolecular Substances; Maleates; Methylation; Peptide Fragments; Protein Binding; Solubility; Spectrophotometry, Ultraviolet; Superoxide Dismutase; Trypsin

1974
Developmental changes of the primary structure and histidine methylation in rabbit skeletal muscle myosin.
    Nature: New biology, 1972, Dec-27, Volume: 240, Issue:104

    Topics: Age Factors; Amino Acid Sequence; Amino Acids; Animals; Animals, Newborn; Autoanalysis; Chromatography, Ion Exchange; Electrophoresis, Paper; Histidine; Lysine; Methylation; Methylhistidines; Muscles; Myocardium; Myosins; Peptides; Rabbits

1972
50-S ribosomal proteins. Peptide studies on two acidic proteins, A 1 and A 2 , isolated from 50-S ribosomes of Escherichia coli.
    European journal of biochemistry, 1972, Jan-31, Volume: 25, Issue:1

    Topics: Amino Acid Sequence; Autoanalysis; Bacterial Proteins; Chromatography, Paper; Electrophoresis, Paper; Escherichia coli; Lysine; Methylation; Molecular Weight; Peptides; Protein Denaturation; Ribosomes; Trypsin

1972
Amino acid sequences around the two -N-trimethyllysine residues in rabbit skeletal muscle myosin.
    The Journal of biological chemistry, 1972, Jun-25, Volume: 247, Issue:12

    Topics: Amino Acid Sequence; Amino Acids; Animals; Chemical Phenomena; Chemistry; Chromatography, Gel; Chromatography, Ion Exchange; Electrophoresis, Paper; Hydrogen-Ion Concentration; Lysine; Methylation; Muscle Proteins; Myosin Subfragments; Myosins; Peptides; Rabbits; Spectrophotometry; Thermolysin; Trypsin

1972
Reductive methylation: a method for preparing functionally active radioactive ribosomes.
    FEBS letters, 1973, Nov-15, Volume: 37, Issue:1

    Topics: Autoradiography; Bacterial Proteins; Borohydrides; Escherichia coli; Formaldehyde; Isotope Labeling; Lysine; Methylation; Ribosomes; Tritium

1973
Function of N2 methylguanine in phenylalanine transfer RNA.
    Nature: New biology, 1973, Dec-05, Volume: 246, Issue:153

    Topics: Alanine; Amino Acyl-tRNA Synthetases; Animals; Base Sequence; Binding Sites; Escherichia coli; Guanine; In Vitro Techniques; Isoleucine; Kinetics; Liver; Lysine; Methionine; Methylation; Nucleic Acid Conformation; Phenylalanine; Rabbits; RNA, Transfer; S-Adenosylmethionine; Saccharomyces cerevisiae; Triticum; tRNA Methyltransferases; Valine

1973
Reductive-methylation studies on L7 and L12 ribosomal proteins.
    European journal of biochemistry, 1974, May-02, Volume: 44, Issue:1

    Topics: Acetylation; Acylation; Amino Acid Sequence; Autoanalysis; Bacterial Proteins; Binding Sites; Borohydrides; Carbon Radioisotopes; Centrifugation, Zonal; Chromatography; Electrophoresis; Escherichia coli; Formaldehyde; Guanosine Triphosphate; Isoelectric Focusing; Lysine; Macromolecular Substances; Methylation; Muramidase; Nucleotidases; Peptide Elongation Factors; Peptide Fragments; Ribosomes; Serine; Trypsin

1974
Methionine-dependent synthesis of ribosomal ribonucleic acid during sporulation and vegetative growth of Saccharomyces cerevisiae.
    Journal of bacteriology, 1974, Volume: 120, Issue:3

    Topics: Adenine; Carbon Radioisotopes; Cycloheximide; Diploidy; Electrophoresis, Polyacrylamide Gel; Fungal Proteins; Kinetics; Leucine; Lysine; Methionine; Methylation; Phosphorus Radioisotopes; RNA; RNA, Ribosomal; Saccharomyces cerevisiae; Spores, Fungal; Tritium

1974
Methylation of ribosomal proteins in Escherichia coli.
    Journal of bacteriology, 1974, Volume: 120, Issue:2

    Topics: Amino Acids; Autoanalysis; Bacterial Proteins; Carbon Radioisotopes; Culture Media; Electrophoresis, Paper; Escherichia coli; Lysine; Methionine; Methylation; Ribosomes; Tritium

1974
Inactivation of papain by S-methylation of its cysteinyl residue with O-methylisourea.
    Biochemistry, 1972, Jan-04, Volume: 11, Issue:1

    Topics: Binding Sites; Chemical Phenomena; Chemistry; Cysteine; Edetic Acid; Enzyme Activation; Hydrogen-Ion Concentration; Kinetics; Lysine; Mathematics; Mercaptoethanol; Mercury; Methylation; Methylurea Compounds; Organometallic Compounds; Papain; Sulfhydryl Reagents; Urea

1972
[N epsilon-methylated lysine: degradation and excretion].
    Hoppe-Seyler's Zeitschrift fur physiologische Chemie, 1972, Volume: 353, Issue:10

    Topics: Animals; Creatinine; Dogs; Europe; Humans; Inulin; Japan; Lysine; Methylation; Mice; Tritium

1972
The molecular requirements for chemotactic attraction of leucocytes by proteins. Studies of proteins with synthetic side groups.
    European journal of immunology, 1972, Volume: 2, Issue:6

    Topics: Acylation; Aldehydes; Alkylation; Amides; Anhydrides; Chemotaxis; Ethers, Cyclic; Fluoresceins; Gelatin; Glutamates; Guanidines; Humans; Immunoglobulin G; Iodoacetates; Leukocytes; Lysine; Methylation; Muramidase; Ovalbumin; Picryl Chloride; Serum Albumin; Tosyl Compounds

1972
[Relative stability of lysine-bound methyl groups in arginie-rich histones and their subfrations in Ehrlich ascites tumor cells in vitro].
    Hoppe-Seyler's Zeitschrift fur physiologische Chemie, 1972, Volume: 353, Issue:9

    Topics: Animals; Arginine; Binding Sites; Carcinoma, Ehrlich Tumor; Cells, Cultured; Electrophoresis; Female; Histones; In Vitro Techniques; Lysine; Methionine; Methylation; Mice; Tritium

1972
[Improved column chromatographic determination of N methylated lysine in physiological solutions].
    Journal of chromatography, 1973, Feb-07, Volume: 76, Issue:1

    Topics: Chromatography; Lysine; Methods; Methylation

1973
Protein methylation by cerebral tissue.
    Journal of neurochemistry, 1973, Volume: 20, Issue:3

    Topics: Acetone; Amino Acids; Ammonium Sulfate; Animals; Arginine; Brain; Carbon Isotopes; Cattle; Chromatography, DEAE-Cellulose; Cytoplasm; Dialysis; Histones; Lysine; Methylation; Nerve Tissue Proteins; Powders; Proteins; Rats; S-Adenosylmethionine; Time Factors

1973
The periodic synthesis of S-adenosylmethionine: protein methyltransferases during the HeLa S-3 cell cycle.
    The Journal of biological chemistry, 1973, Jun-25, Volume: 248, Issue:12

    Topics: Amino Acids; Arginine; Carbon Isotopes; Cycloheximide; Cytarabine; Dactinomycin; DNA Replication; DNA, Neoplasm; HeLa Cells; Histones; Humans; Kinetics; Lysine; Methionine; Methylation; Methyltransferases; Mitosis; Neoplasm Proteins; S-Adenosylmethionine; Thymidine

1973
Regulation of amino acid transport in chick embryo heart cells. 3. Formal identification of the A mediation as an adaptive transport system.
    Biochimica et biophysica acta, 1973, Jun-22, Volume: 311, Issue:2

    Topics: Alanine; Amino Acids; Aminoisobutyric Acids; Animals; Biological Transport, Active; Carbon Isotopes; Carboxylic Acids; Cell Membrane; Chick Embryo; Glycine; Heart; In Vitro Techniques; Kinetics; Leucine; Lysine; Methylation; Myocardium; Phenylalanine; Serine; Sodium; Time Factors

1973
Pancreas acinar cell regeneration. 13. Histone synthesis and modification.
    Federation proceedings, 1973, Volume: 32, Issue:11

    Topics: Acetates; Acetylation; Animals; Autoradiography; Carbon Radioisotopes; DNA; Electrophoresis, Polyacrylamide Gel; Ethionine; Histones; Isotope Labeling; Lysine; Male; Methionine; Methylation; Pancreas; Phosphates; Phosphorus Radioisotopes; Rats; Regeneration; Spectrophotometry; Tritium

1973
Determination of the dissociation constants of the lysine residues of lysozyme by proton-magnetic-resonance spectroscopy.
    European journal of biochemistry, 1973, Dec-17, Volume: 40, Issue:2

    Topics: Enzyme Activation; Gadolinium; Hydrogen-Ion Concentration; Lysine; Magnetic Resonance Spectroscopy; Methylation; Muramidase; Protein Conformation; Protein Denaturation

1973
Quantitative determination of N epsilon-methylated lysines in human plasma and urine.
    Hoppe-Seyler's Zeitschrift fur physiologische Chemie, 1973, Volume: 354, Issue:2

    Topics: Animals; Autoanalysis; Chickens; Chromatography, Ion Exchange; Humans; Hydroxylysine; Kidney; Lysine; Methylation; Ornithine; Species Specificity; Tritium

1973
Chemical modification of lysine residues in ovine luteinizing hormone. Effect on biological activity.
    Biochimica et biophysica acta, 1974, Mar-14, Volume: 342, Issue:1

    Topics: Alkylation; Animals; Arginine; Ascorbic Acid; Binding Sites; Biological Assay; Borohydrides; Carbamates; Chromatography, Gel; Citrulline; Cyanogen Bromide; Female; Formaldehyde; Guanidines; Luteinizing Hormone; Lysine; Methylation; Ovary; Oxidation-Reduction; Protein Binding; Protein Conformation; Sheep; Structure-Activity Relationship

1974
Identification of rapidly trinitrophenylating amino groups of human Bence-Jones proteins.
    Journal of biochemistry, 1974, Volume: 75, Issue:1

    Topics: Amino Acids; Bence Jones Protein; Chemical Phenomena; Chemistry; Chromatography, Gel; Chromatography, Ion Exchange; Chymotrypsin; Electrophoresis; Humans; Lysine; Methylation; Nitrobenzenes; Oxidation-Reduction

1974
Acetylation and methylation of histones in pernicious anemia.
    Blood, 1974, Volume: 44, Issue:1

    Topics: Acetylation; Amino Acids; Anemia, Pernicious; Bone Marrow Examination; Electrophoresis, Paper; Erythropoiesis; Histones; Humans; Lysine; Methionine; Methylation; Tritium; Vitamin B 12

1974
[Primary structure of histones (author's transl)].
    Postepy biochemii, 1974, Volume: 20, Issue:2

    Topics: Acetylation; Acetyltransferases; Amino Acid Sequence; Animals; Arginine; Chickens; Fishes; Histones; Liver; Lysine; Methylation; Phosphates; Swine; Thymus Gland; Vegetables

1974
Syntheses and conformational studies of poly(N-epsilon-methyl-L-lysine), poly(N-delta-methyl-L-ornithine), poly(N-delta-ethyl-L-ornithine), and their carbobenzoxy derivatives.
    Biopolymers, 1974, Volume: 13, Issue:6

    Topics: Circular Dichroism; Hydrogen-Ion Concentration; Lysine; Mathematics; Methylation; Optical Rotatory Dispersion; Ornithine; Peptides; Potentiometry; Protein Conformation; Temperature; Thermodynamics

1974
Influence of additional methyl groups in the N-epsilon-amino position of lysine on the renal handling.
    Pflugers Archiv : European journal of physiology, 1974, Jan-11, Volume: 347, Issue:2

    Topics: Absorption; Animals; Dogs; Female; Kidney Tubules; Lysine; Male; Methods; Methylation; Tritium

1974
Formaldehyde binding by 2-keto-4-hydroxyglutarate aldolase. Formation and characterization of an inactive aldolase-formaldehyde-cyanide adduct.
    The Journal of biological chemistry, 1974, Aug-10, Volume: 249, Issue:15

    Topics: Aldehyde-Lyases; Animals; Binding Sites; Borohydrides; Carbon Radioisotopes; Cattle; Chromatography, DEAE-Cellulose; Chromatography, Paper; Cyanides; Formaldehyde; Glyoxylates; Ketoglutaric Acids; Kinetics; Liver; Lysine; Methylation; Oxidation-Reduction; Protein Binding; Pyruvates

1974
Methylation of protein by calf spleen methylase. A new protein methylation reaction.
    The Journal of biological chemistry, 1969, Mar-25, Volume: 244, Issue:6

    Topics: Adenine Nucleotides; Animals; Arginine; Carbon Isotopes; Cattle; Chromatography, Paper; Hot Temperature; Hydrogen-Ion Concentration; Lysine; Methanol; Methionine; Methylation; Ovalbumin; Pepsin A; Proteins; Serum Albumin; Spleen; Transferases

1969
Biosynthesis of 50 s ribosomal subunit in Escherichia coli.
    Journal of molecular biology, 1969, Mar-28, Volume: 40, Issue:3

    Topics: Amino Acids; Bacterial Proteins; Carbon Isotopes; Centrifugation, Density Gradient; Chloramphenicol; Chlorides; Chromatography, Gel; Escherichia coli; Lithium; Lysine; Methylation; Ribosomes; RNA, Bacterial; Tritium; Uridine

1969
The chemical structure of tryptophanase from Escherichia coli. I. Isolation and structure of a pyridoxyl decapeptide from borohydride-reduced holotryptophanase.
    The Journal of biological chemistry, 1970, Jun-10, Volume: 245, Issue:11

    Topics: Amino Acids; Boron Compounds; Chromatography, Ion Exchange; Chromatography, Paper; Chymotrypsin; Electrophoresis; Escherichia coli; Fluorescence; Hydro-Lyases; Indoles; Lysine; Methylation; Oxidation-Reduction; Paper; Peptides; Pyruvates; Spectrophotometry; Tryptophan

1970
Effect of pactamycin on methylation of RNA and protein synthesis.
    Hoppe-Seyler's Zeitschrift fur physiologische Chemie, 1968, Volume: 349, Issue:5

    Topics: Alanine; Anti-Bacterial Agents; Antimetabolites; Bacillus subtilis; Bacterial Proteins; Cell-Free System; Depression, Chemical; Lysine; Methylation; Phenylalanine; Polynucleotides; Ribosomes; RNA, Bacterial; RNA, Transfer; Valine

1968
Transfer RNA patterns in livers of rats fed diets containing 3'-methyl-4-dimethylaminoazobenzene.
    Cancer research, 1970, Volume: 30, Issue:6

    Topics: Amino Acids; Animals; Arginine; Carbon Isotopes; Cell Transformation, Neoplastic; Chemical and Drug Induced Liver Injury; Chromatography; Female; Histidine; Leucine; Liver Diseases; Lysine; Methionine; Methylation; p-Dimethylaminoazobenzene; Phenylalanine; Precancerous Conditions; Rats; RNA, Transfer; Serine; Threonine; Tritium; Tyrosine; Valine

1970
Methylation of arginine and lysine residues of cerebral proteins.
    Biochimica et biophysica acta, 1971, Jul-25, Volume: 243, Issue:1

    Topics: Amino Acids; Animals; Arginine; Bacteria; Brain; Carbon Isotopes; Carboxy-Lyases; Chemical Phenomena; Chemistry; Chromatography, Ion Exchange; Chromatography, Paper; Electrophoresis, Paper; Enterococcus faecalis; Hydrolysis; Isomerism; Liver; Lysine; Methylation; Nerve Tissue Proteins; Proteins; Rats; S-Adenosylmethionine; Ureohydrolases

1971
Induction of interferon in L cells by polyinosinic-polycytidylic acid in the presence of cationic compounds. I. Polycations.
    Archiv fur die gesamte Virusforschung, 1972, Volume: 36, Issue:1

    Topics: Adsorption; Carbon Isotopes; Culture Media; Dextrans; Glass; Histones; Interferons; L Cells; Lysine; Methylation; Ornithine; Peptide Hydrolases; Phenylalanine; Poly I-C; Polymers; Polynucleotides; Protamines; Protein Biosynthesis; Ribonucleases; Serum Albumin, Bovine; Sulfates; Tritium

1972
Acanthamoeba actin. Composition of the peptide that contains 3-methylhistidine and a peptide that contains N e -methyllysine.
    Biochemistry, 1972, Apr-11, Volume: 11, Issue:8

    Topics: Acetamides; Actins; Alkylation; Amino Acids; Amoeba; Animals; Chromatography, DEAE-Cellulose; Chromatography, Gel; Chromatography, Ion Exchange; Cyanogen Bromide; Electrophoresis; Histidine; Iodoacetates; Isotope Labeling; Lysine; Methylation; Methylhistidines; Molecular Weight; Muscle Proteins; Muscles; Oxidation-Reduction; Peptides; Rabbits; Sodium Dodecyl Sulfate; Tritium

1972
Studies of histone methylation during the HeLa S-3 cell cycle.
    The Journal of biological chemistry, 1972, Jul-10, Volume: 247, Issue:13

    Topics: Amino Acids; Carbon Isotopes; Cell Fractionation; Cell Nucleus; Chromatography, Ion Exchange; DNA Replication; Electrophoresis; HeLa Cells; Histones; Humans; Hydrogen-Ion Concentration; Lysine; Methionine; Methylation; Methylhistidines; Mitosis; Peptides; Solubility; Thymidine; Time Factors; Tritium

1972
Histone methylation during hepatic regeneration in rat.
    Biochimica et biophysica acta, 1972, Aug-16, Volume: 277, Issue:1

    Topics: Animals; Arginine; Carbon Isotopes; Cytoplasm; DNA; Hepatectomy; Histones; Kinetics; Liver; Liver Regeneration; Lysine; Male; Methylation; Methyltransferases; Orotic Acid; Proteins; Rats; RNA; S-Adenosylmethionine; Thymidine; Tritium

1972
Protein methylation during the development of rat brain.
    Biochemical and biophysical research communications, 1972, Jan-31, Volume: 46, Issue:2

    Topics: Animals; Animals, Newborn; Arginine; Brain; Carbon Isotopes; Carboxylic Acids; Cytoplasm; Ethanol; Fetus; Histones; Lysine; Methionine; Methylation; Methyltransferases; Nerve Tissue Proteins; Proteins; Rats; S-Adenosylmethionine; Solubility; Sulfuric Acids; Transferases; Tritium

1972
The distribution and turnover of labeled methyl groups in histone fractions of cultured mammalian cells.
    Archives of biochemistry and biophysics, 1972, Volume: 148, Issue:2

    Topics: Amino Acids; Animals; Arginine; Carbon Isotopes; Cell Fractionation; Cell Line; Cells, Cultured; Chromatography, Gas; Cricetinae; Half-Life; Histones; Hydrolysis; Lysine; Methionine; Methylation

1972
Effect of methylation on susceptibility of protein to proteolytic enzymes.
    Biochemistry, 1972, Jul-04, Volume: 11, Issue:14

    Topics: Amines; Animals; Borohydrides; Cattle; Chemical Phenomena; Chemistry; Chymotrypsin; Formaldehyde; Formates; Histones; Hydrolysis; Indenes; Indicators and Reagents; Ketones; Kinetics; Lysine; Methylation; Nitrobenzenes; Oxidation-Reduction; Pancreas; Peptides; Ribonucleases; Sulfonic Acids; Trypsin

1972
Subunits of bakers' yeast cytochrome b2 (L-lactate cytochrome c oxidoreductase). 2. End groups and origin of microheterogeneity.
    European journal of biochemistry, 1971, Jun-29, Volume: 20, Issue:4

    Topics: Alanine; Carboxypeptidases; Chemical Phenomena; Chemistry; Cytochromes; Fluorides; L-Lactate Dehydrogenase; Lysine; Methylation; Protease Inhibitors; Saccharomyces

1971
Identification of lysines reactive with pyridoxal 5'-phosphate in glyceraldehyde-3-phosphate dehydrogenase.
    European journal of biochemistry, 1971, Jun-29, Volume: 20, Issue:4

    Topics: Amino Acid Sequence; Animals; Boron Compounds; Electrophoresis; Fluorescence; Glyceraldehyde-3-Phosphate Dehydrogenases; Lysine; Methylation; Muscles; Peptides; Pyridoxal Phosphate; Rabbits

1971
Examination of the tumour growth promoting effect of -N-trimethyllysine. An autoradiographic study.
    Neoplasma, 1971, Volume: 18, Issue:3

    Topics: Animals; Ascites; Autoradiography; Female; Lymphoma; Lysine; Methylation; Mice; Mitosis; Neoplasms, Experimental; Thymidine; Time Factors; Tritium

1971
Methylation of lysine residues of histone fractions in synchronized mammalian cells.
    Archives of biochemistry and biophysics, 1971, Volume: 143, Issue:1

    Topics: Amino Acids; Animals; Cell Division; Cell Line; Chromatography, Paper; Cricetinae; Culture Techniques; DNA; Electrophoresis; Female; Histones; Hydrolysis; Isoleucine; Lysine; Methionine; Methylation; Mitosis; Ovary; Paper; Thymidine; Tritium

1971
A study of chemically methylated deoxyribonucleic acid.
    European journal of biochemistry, 1971, Jul-15, Volume: 21, Issue:1

    Topics: Adenine; Animals; Binding Sites; Cattle; Circular Dichroism; Dialysis; DNA, Bacterial; Filtration; Guanine; Hot Temperature; Luminescent Measurements; Lysine; Methylation; Protein Denaturation; RNA Nucleotidyltransferases; Spermine; Viscosity

1971
Protein methylation.
    Science (New York, N.Y.), 1971, Oct-08, Volume: 174, Issue:4005

    Topics: Actins; Amino Acids; Animals; Arginine; Aspartic Acid; Autoanalysis; Carboxylic Acids; Cats; Cattle; Cell Wall; Chromatography, Paper; Cytochromes; Flagella; Glutamates; Histidine; Histones; Humans; Lysine; Methylation; Methyltransferases; Myosins; Ornithine; Ovalbumin; Proteins; Rabbits; Rats; Ribosomes; S-Adenosylmethionine

1971
Histone methylation. Partial purification of two histone-specific methyltransferases from rat thymus nuclei preferentially methylating histones F2a 1 and F3.
    Archives of biochemistry and biophysics, 1971, Volume: 145, Issue:2

    Topics: Acetone; Albumins; Amino Acids; Ammonium Sulfate; Animals; Arginine; Cell Nucleus; Chemical Precipitation; Chromatography, DEAE-Cellulose; Chromatography, Gel; Cytochromes; Electrophoresis; Hemoglobins; Histidine; Histones; Hydrogen-Ion Concentration; Kinetics; Lysine; Male; Methylation; Methyltransferases; Molecular Weight; Muramidase; Peptides; Protamines; Rats; Rats, Inbred Strains; Ribonucleases; S-Adenosylmethionine; Thymus Gland; Tritium

1971
The amino-acid sequence of the cytochrome c of Ginkgo biloba L.
    European journal of biochemistry, 1971, Dec-10, Volume: 23, Issue:3

    Topics: Amino Acid Sequence; Chymotrypsin; Cytochromes; Dansyl Compounds; Lysine; Methods; Methylation; Trees; Trypsin

1971
A modified synthesis of -N-carbobenzoxy-L-lysine and the preparation and analysis of mixtures of -N-methyllysines.
    Canadian journal of biochemistry, 1971, Volume: 49, Issue:12

    Topics: Aluminum; Benzyl Compounds; Carbonates; Chemical Phenomena; Chemistry; Chromatography; Chromatography, Ion Exchange; Copper; Diazomethane; Formates; Lysine; Methylation; Spectrophotometry

1971
Enzymatic methylation of skeletal muscle contractile proteins.
    Archives of biochemistry and biophysics, 1971, Volume: 146, Issue:1

    Topics: Actins; Actomyosin; Animals; Animals, Newborn; Carbon Isotopes; Chick Embryo; Chickens; Chromatography, Gel; Chromatography, Ion Exchange; Histidine; Kinetics; Lysine; Methionine; Methylation; Muscle Proteins; Muscles; Myofibrils; Myosins; S-Adenosylmethionine; Sarcoplasmic Reticulum; Ultracentrifugation

1971
Epsilon-N-dimethyllysine in amoeba actin.
    Nature, 1970, Sep-19, Volume: 227, Issue:5264

    Topics: Amino Acids; Amoeba; Chromatography, Ion Exchange; Lysine; Methylation; Muscle Proteins; Tritium

1970
Methylation of protein (histone) in vitro: enzymic activity from the soluble fraction of rat organs.
    Biochimica et biophysica acta, 1969, Oct-22, Volume: 190, Issue:2

    Topics: Acyltransferases; Amino Acids; Animals; Arginine; Carbon Isotopes; Cattle; Coenzyme A; Dialysis; Estradiol; Female; Histones; Hot Temperature; Hydrogen-Ion Concentration; Insulin; Kinetics; Lysine; Methionine; Methylation; Nucleosides; Puromycin; Rats; Ribonucleases; Spleen; Thymus Gland; Transferases; Ultracentrifugation; Uterus

1969
The carboxypeptidase B-catalyzed hydrolysis of poly-episilon-N-methyl-L-lysine and poly-episilon-N, episilon-N-dimethyl-L-lysine.
    Biochemical and biophysical research communications, 1969, Nov-20, Volume: 37, Issue:5

    Topics: Amino Acids; Animals; Carboxypeptidases; Kinetics; Lysine; Methylation; Peptides; Swine; Time Factors

1969
Secondary modification of cytochrome c by Neurospora crassa.
    Biochemistry, 1969, Volume: 8, Issue:11

    Topics: Amino Acids; Carbon Isotopes; Chemical Phenomena; Chemistry; Chromatography, Ion Exchange; Chymotrypsin; Culture Media; Cytochromes; Kinetics; Lysine; Methylation; Mitochondria; Mutation; Neurospora; Peptide Biosynthesis; Peptides; Tritium; Ultracentrifugation

1969
Epsilon-N-monomethyl-lysine and trimethyl-lysine in myosin.
    The Biochemical journal, 1970, Volume: 117, Issue:2

    Topics: Animals; Carbon Isotopes; Lysine; Methionine; Methylation; Muscle Proteins; Myofibrils; Protein Biosynthesis; Rabbits

1970
Immunochemical studies on hen's egg-white lysozyme. The role of the lysine, the histidine and the methionine residues.
    European journal of biochemistry, 1970, May-01, Volume: 14, Issue:1

    Topics: Antibodies; Antibody Specificity; Carbamates; Chemical Precipitation; Chromatography, Thin Layer; Cyanides; Female; Histidine; Immune Sera; Immunochemistry; Lysine; Methionine; Methylation; Muramidase; Ovalbumin; Ovum

1970
Isolation and identification of N-G,N-G- and N-G,N'-G-dimethyl-arginine, N-epsilon-mono-, di-, and trimethyllysine, and glucosylgalactosyl- and galactosyl-delta-hydroxylysine from human urine.
    The Journal of biological chemistry, 1970, Nov-10, Volume: 245, Issue:21

    Topics: Amino Acids; Arginine; Chromatography, Ion Exchange; Chromatography, Paper; Diet; Galactose; Glycosuria; Humans; Infrared Rays; Lysine; Magnetic Resonance Spectroscopy; Methylation

1970
Effect of N-methylation and chain length on kinetic constants of trypsin substrates. Epsilon-N-methyllysine and homolysine derivatives as substrates.
    Canadian journal of biochemistry, 1970, Volume: 48, Issue:10

    Topics: Amides; Amino Acids; Arginine; Benzoates; Caprylates; Chemical Phenomena; Chemistry; Chromatography, Thin Layer; Esters; Kinetics; Lysine; Methylation; Ornithine; Peptides; Trypsin; Trypsin Inhibitors

1970
Solubilization and partial purification of protein methylase 3 from calf thymus nuclei.
    The Journal of biological chemistry, 1970, Nov-25, Volume: 245, Issue:22

    Topics: Animals; Carbon Isotopes; Cattle; Cell Nucleus; Chromatography, DEAE-Cellulose; Enzymes; Histones; Lysine; Magnesium; Methionine; Methods; Methylation; Nucleosides; Rats; Solubility; Thymus Gland; Transferases; Zinc

1970
S methylation of thiols by O-methylisourea.
    Biochemistry, 1970, Aug-18, Volume: 9, Issue:17

    Topics: Acetates; Amino Acids; Chemical Phenomena; Chemistry; Cysteine; Deuterium; Dipeptides; Ethanol; Glycine; Guanidines; Hydrogen-Ion Concentration; Imidazoles; Kinetics; Lysine; Magnetic Resonance Spectroscopy; Mathematics; Mercaptoethanol; Methylation; Models, Biological; Sulfhydryl Compounds; Sulfhydryl Reagents; Time Factors; Urea

1970
Calf thymus histone 3: sequences of the amino-and carboxyl-terminal regions and of the regions containing lysyl residues modified by acetylation and methylation.
    Biochemical and biophysical research communications, 1970, Aug-24, Volume: 40, Issue:4

    Topics: Amino Acid Sequence; Amino Acids; Animals; Cattle; Histones; Lysine; Malates; Methylation; Peptides; Thymus Gland; Trypsin

1970
Enzymic modification of chromosomal macromolecules. I. DNA and protein methylation in mouse tumour cell chromatin.
    Biochimica et biophysica acta, 1971, Mar-11, Volume: 232, Issue:2

    Topics: Amino Acids; Animals; Arginine; Ascitic Fluid; Catalysis; Cell Nucleus; Centrifugation, Density Gradient; Chemical Precipitation; Chromatography; Chromatography, Paper; Chromosomes; Colorimetry; Cytosine; Deoxyribonucleases; DNA, Neoplasm; Drug Stability; Electrophoresis; Histidine; Histones; Hydrogen-Ion Concentration; Hydrolysis; Lysine; Methylation; Methyltransferases; Mice; Neoplasm Proteins; Neoplasms, Experimental; S-Adenosylmethionine; Temperature; Time Factors; Transferases; Tritium

1971
N G ,N G ,-dimethylarginine in myosin during muscle development.
    Biochemical and biophysical research communications, 1971, May-07, Volume: 43, Issue:3

    Topics: Actins; Age Factors; Amino Acids; Animals; Animals, Newborn; Arginine; Carbon Isotopes; Cell Line; Chick Embryo; Chromatography, Ion Exchange; Electrophoresis; Hindlimb; Histidine; Hydrolysis; Isomerism; Lysine; Methionine; Methylation; Muscle Development; Muscle Proteins; Muscles; Myocardium; Myosins; Paper; Rats

1971
Purification and specificity of porcine enterokinase.
    The Journal of biological chemistry, 1971, Aug-25, Volume: 246, Issue:16

    Topics: Aminopeptidases; Animals; Aspartic Acid; Binding Sites; Calcium; Catalysis; Cattle; Chromatography, DEAE-Cellulose; Chromatography, Gel; Chromatography, Ion Exchange; Chromatography, Paper; Chymotrypsin; Duodenum; Electrophoresis; Endopeptidases; Enzyme Activation; Enzyme Precursors; Hydrogen-Ion Concentration; Hydrolysis; Isoflurophate; Isoleucine; Kinetics; Lysine; Methylation; Paper; Peptides; Phosphorus Isotopes; Protease Inhibitors; Sulfonic Acids; Swine; Toluene; Trypsin; Trypsin Inhibitors; Trypsinogen

1971
The methylation of histones during regeneration of the liver.
    The Journal of biological chemistry, 1968, Feb-25, Volume: 243, Issue:4

    Topics: Acetone; Amino Acids; Animals; Arginine; Carbon Isotopes; Cell Division; Cell Nucleus; DNA; Electrophoresis; Histones; Liver; Liver Regeneration; Lysine; Male; Methionine; Methylation; Rats; RNA; Thymidine

1968
[Nepsilon-methylated lysine in histones from chicken erythrocytes].
    Hoppe-Seyler's Zeitschrift fur physiologische Chemie, 1968, Volume: 349, Issue:5

    Topics: Amino Acids; Animals; Cell Nucleus; Chickens; Chromatography; Erythrocytes; Histones; Lysine; Methylation

1968
Epsilon-N-methyl lysine: an additional amino-acid in human plasma.
    Nature, 1969, May-17, Volume: 222, Issue:5194

    Topics: Blood Protein Electrophoresis; Chromatography, Paper; Humans; Lysine; Methylation

1969
Calf and pea histone IV. II. The complete amino acid sequence of calf thymus histone IV; presence of epsilon-N-acetyllysine.
    The Journal of biological chemistry, 1969, Jan-25, Volume: 244, Issue:2

    Topics: Amino Acid Sequence; Amino Acids; Animals; Binding Sites; Cattle; Chemical Phenomena; Chemistry; Chromatography, Gel; DNA; Histones; Lysine; Maleates; Methylation; Peptides; Plants; Protein Hydrolysates; Thymus Gland

1969
Effects of cycloheximide on ribosomal RNA synthesis in yeast.
    Biochemical and biophysical research communications, 1969, Feb-21, Volume: 34, Issue:4

    Topics: Ascomycota; Carbon Isotopes; Centrifugation, Density Gradient; Cycloheximide; Lysine; Methionine; Methylation; Molecular Weight; Ribosomes; RNA; Stimulation, Chemical; Tritium; Uracil

1969
Specificity of the enzymatic methylation of pea histone.
    Biochemical and biophysical research communications, 1969, Mar-31, Volume: 34, Issue:6

    Topics: Adenine Nucleotides; Electrophoresis; Histones; Lysine; Methionine; Methylation; Plants; Spectrophotometry; Tritium

1969
[Synthesis of tritium-labelled, N-methylated lysine].
    Hoppe-Seyler's Zeitschrift fur physiologische Chemie, 1969, Volume: 350, Issue:7

    Topics: Amino Acids; Bromides; Lysine; Malonates; Methylation; Quaternary Ammonium Compounds; Tritium

1969
[Fractionation and properties of N-methylated lysines].
    Hoppe-Seyler's Zeitschrift fur physiologische Chemie, 1969, Volume: 350, Issue:8

    Topics: Autoanalysis; Carboxy-Lyases; Chemical Phenomena; Chemistry; Chromatography; Chromatography, Paper; Electrophoresis; Hot Temperature; Lysine; Methylation; Pipecolic Acids

1969
The carboxymethylation of human metmyoglobin.
    The Journal of biological chemistry, 1969, Apr-25, Volume: 244, Issue:8

    Topics: Amino Acids; Animals; Bromine; Carbon Isotopes; Cetacea; Chemical Phenomena; Chemistry; Electrophoresis; Globins; Guanidines; Histidine; Humans; Hydrogen-Ion Concentration; Imidazoles; Iodoacetates; Lysine; Methionine; Methylation; Myoglobin; Optical Rotatory Dispersion; Peptides; Protein Denaturation; Protein Hydrolysates; Solubility; Time Factors; Trypsin; Urea

1969
Protein methylation in rat brain in vitro.
    Journal of neurochemistry, 1969, Volume: 16, Issue:8

    Topics: Amino Acids; Animals; Arginine; Carbon Isotopes; Centrifugation; Chromatography; Dialysis; Histidine; Histones; In Vitro Techniques; Kidney; Liver; Lysine; Male; Methionine; Methylation; Myocardium; Nerve Tissue Proteins; Pancreas; Rats; Spleen; Testis; Thymus Gland

1969
Chemical studies of histone methylation. Evidence for the occurrence of 3-methylhistidine in avian erythrocyte histone fractions.
    The Journal of biological chemistry, 1969, Sep-25, Volume: 244, Issue:18

    Topics: Amino Acids; Anemia; Animals; Autoanalysis; Blood Proteins; Chromatography, Ion Exchange; Ducks; Electrophoresis; Erythrocyte Aging; Erythrocyte Count; Erythrocytes; Histidine; Histones; Hydrogen-Ion Concentration; In Vitro Techniques; Lysine; Methionine; Methylation; Reticulocytes; Time Factors; Tritium

1969
Enzymatic trimethylation of residue-72 lysine in cytochrome c. Effect on the total structure.
    Biochimica et biophysica acta, 1980, Mar-26, Volume: 622, Issue:1

    Topics: Animals; Asparagine; Chemical Phenomena; Chemistry; Cytochrome c Group; Histone-Lysine N-Methyltransferase; Horses; Hydrogen Bonding; Isoelectric Focusing; Isoelectric Point; Lysine; Methylation; Models, Molecular; Neurospora crassa; Protein Methyltransferases; Saccharomyces cerevisiae; Species Specificity

1980
[13C]Methylated ribonuclease A. 13C NMR studies of the interaction of lysine 41 with active site ligands.
    The Journal of biological chemistry, 1981, Jan-10, Volume: 256, Issue:1

    Topics: Animals; Binding Sites; Carbon Isotopes; Cattle; Endonucleases; Hydrogen-Ion Concentration; Kinetics; Lysine; Magnetic Resonance Spectroscopy; Methylation; Pancreas; Ribonuclease, Pancreatic; Ribonucleases

1981
Involvement of basic amino acids in the activity of a nucleic acid helix-destabilizing protein.
    Biochimica et biophysica acta, 1981, Jun-26, Volume: 654, Issue:1

    Topics: Acylation; Arginine; Circular Dichroism; DNA Helicases; DNA-Binding Proteins; Endonucleases; Kinetics; Lysine; Methylation; Nucleic Acid Conformation; Osmolar Concentration; Phenylglyoxal; Poly dA-dT; Protein Conformation; Ribonuclease, Pancreatic; Ribonucleases; Viral Proteins

1981
Manifold effects of sodium butyrate on nuclear function. Selective and reversible inhibition of phosphorylation of histones H1 and H2A and impaired methylation of lysine and arginine residues in nuclear protein fractions.
    The Journal of biological chemistry, 1981, Sep-25, Volume: 256, Issue:18

    Topics: Arginine; Butyrates; Cell Nucleus; HeLa Cells; Histones; Humans; Lysine; Methylation; Nucleoproteins; Phosphoprotein Phosphatases; Phosphorus Radioisotopes; Phosphorylation; Protein Kinases; S-Adenosylmethionine

1981
The site of attachment of retinal in bacteriorhodopsin. The epsilon-amino group in Lys-41 is not required for proton translocation.
    The Journal of biological chemistry, 1982, Aug-10, Volume: 257, Issue:15

    Topics: Bacteriorhodopsins; Carotenoids; Chymotrypsin; Kinetics; Lysine; Methylation; Peptide Fragments; Protons; Retinaldehyde; Spectrophotometry; Vitamin A

1982
Enzymatic trimethylation of lysine-72 in cytochrome c.
    European journal of biochemistry, 1983, Sep-15, Volume: 135, Issue:2

    Topics: Animals; Chemical Phenomena; Chemistry; Cytochrome c Group; Horses; Isoelectric Focusing; Lysine; Methylation; Myocardium; Urea

1983
Critical lysine residue at the chloride binding site of angiotensin converting enzyme.
    Biochemistry, 1983, Nov-08, Volume: 22, Issue:23

    Topics: Animals; Chlorides; Hydrogen-Ion Concentration; Kinetics; Lung; Lysine; Mathematics; Methylation; Peptidyl-Dipeptidase A; Rabbits

1983
Identification of lysine residues essential for microtubule assembly. Demonstration of enhanced reactivity during reductive methylation.
    The Journal of biological chemistry, 1983, Feb-25, Volume: 258, Issue:4

    Topics: Animals; Brain Chemistry; Cattle; Cyanogen Bromide; Kinetics; Lysine; Macromolecular Substances; Mathematics; Methylation; Microtubules; Tubulin

1983
Specific 13C reductive methylation of glycophorin A. Possible relation of the N-terminal amino acid and the lysine residues to MN blood group specificities.
    Archives of biochemistry and biophysics, 1983, Apr-01, Volume: 222, Issue:1

    Topics: Amino Acid Sequence; Animals; Carbon Isotopes; Chemical Phenomena; Chemistry; Glycophorins; Humans; Lysine; Magnetic Resonance Spectroscopy; Methylation; MNSs Blood-Group System; Oxidation-Reduction; Rabbits; Sialoglycoproteins

1983
Analysis for methylated amino acids in proteins.
    Methods in enzymology, 1983, Volume: 91

    Topics: Amino Acids; Animals; Histidine; Lysine; Methods; Methylation; Molecular Weight; Proteins

1983
Reductive methylation of insulin. Production of a biologically active tritiated insulin.
    International journal of peptide and protein research, 1983, Volume: 22, Issue:1

    Topics: Glycine; Insulin; Isoelectric Point; Lysine; Methylation; Oxidation-Reduction; Structure-Activity Relationship; Time Factors; Tritium

1983
Spontaneous N epsilon-methylation and N epsilon-formylation reactions between L-lysine and formaldehyde inhibited by L-ascorbic acid.
    The Biochemical journal, 1983, Aug-15, Volume: 214, Issue:2

    Topics: Ascorbic Acid; Chemical Phenomena; Chemistry; Formaldehyde; Lysine; Magnetic Resonance Spectroscopy; Methylation

1983
Arsenite-induced changes in methylation of the 70,000 dalton heat shock proteins in chicken embryo fibroblasts.
    Biochemical and biophysical research communications, 1984, Mar-15, Volume: 119, Issue:2

    Topics: Amino Acids; Animals; Arginine; Arsenic; Arsenites; Chick Embryo; Fibroblasts; Heat-Shock Proteins; Kinetics; Lysine; Methylation

1984
Pyridine borane as a reducing agent for proteins.
    Analytical biochemistry, 1984, May-15, Volume: 139, Issue:1

    Topics: Alkylation; Amino Acids; Boranes; Boron Compounds; Carbohydrates; Chemical Phenomena; Chemistry; Indicators and Reagents; Lysine; Methylation; Oxidation-Reduction; Proteins; Pyridines; Serum Albumin, Bovine; Trifluoroacetic Acid; Tryptophan

1984
Amine inversion in proteins. A 13C-NMR study of proton exchange and nitrogen inversion rates in N epsilon,N epsilon,N alpha,N alpha-[13C]tetramethyllysine,N epsilon,N epsilon,N alpha,N alpha-[13C]tetramethyllysine methyl ester, and reductively methylated
    Biophysical chemistry, 1984, Volume: 19, Issue:4

    Topics: Concanavalin A; Hydrogen-Ion Concentration; Kinetics; Lysine; Magnetic Resonance Spectroscopy; Mathematics; Methylation

1984
Methyl motions in 13C-methylated concanavalin as studied by 13C magnetic resonance relaxation techniques.
    Biochemistry, 1984, Jul-03, Volume: 23, Issue:14

    Topics: Alanine; Concanavalin A; Lysine; Magnetic Resonance Spectroscopy; Methylation

1984
Carnitine biosynthesis from gamma-butyrobetaine and from exogenous protein-bound 6-N-trimethyl-L-lysine by the perfused guinea pig liver. Effect of ascorbate deficiency on the in situ activity of gamma-butyrobetaine hydroxylase.
    The Journal of biological chemistry, 1984, Sep-10, Volume: 259, Issue:17

    Topics: Animals; Ascorbic Acid Deficiency; Betaine; Carbon Radioisotopes; Carnitine; gamma-Butyrobetaine Dioxygenase; Guinea Pigs; Liver; Lysine; Male; Methylation; Mixed Function Oxygenases; Orosomucoid; Perfusion; Tissue Distribution; Tritium

1984
A simple analysis of methylated proteins.
    Methods in enzymology, 1984, Volume: 106

    Topics: Animals; Carbon Radioisotopes; Escherichia coli; HeLa Cells; Humans; Lysine; Methionine; Methylation; Neoplasm Proteins; Protein Processing, Post-Translational; Proteins; Radioisotope Dilution Technique; Ribosomal Proteins; Tritium

1984
Methylated lysines and 3-methylhistidine in myosin: tissue and developmental differences.
    Methods in enzymology, 1984, Volume: 106

    Topics: Amino Acid Sequence; Amino Acids; Animals; Chick Embryo; Histidine; Lysine; Methylation; Methylhistidines; Muscles; Myocardium; Myosins; Plants; Polyribosomes; Rabbits; Radioisotope Dilution Technique; S-Adenosylmethionine; Triticum; Tritium

1984
Immunogenicity of homologous low density lipoprotein after methylation, ethylation, acetylation, or carbamylation: generation of antibodies specific for derivatized lysine.
    Journal of lipid research, 1984, Volume: 25, Issue:10

    Topics: Acetylation; Albumins; Alkylation; Animals; Antibodies; Antibody Formation; Antibody Specificity; Binding, Competitive; Chemical Phenomena; Chemistry; Guinea Pigs; Immune Sera; Immunization; Lipoproteins, LDL; Lysine; Methylation

1984
Reductive methylation of the lysyl residues in the fd gene 5 DNA-binding protein: CD and 13C NMR results on the modified protein.
    Journal of biomolecular structure & dynamics, 1984, Volume: 2, Issue:1

    Topics: Binding Sites; Circular Dichroism; DNA-Binding Proteins; Lysine; Magnetic Resonance Spectroscopy; Methylation; Oligodeoxyribonucleotides; Oxidation-Reduction; Viral Proteins

1984
Inhibition of receptor-mediated clearance of lysine and arginine-modified lipoproteins from the plasma of rats and monkeys.
    Proceedings of the National Academy of Sciences of the United States of America, 1980, Volume: 77, Issue:1

    Topics: Animals; Arginine; Cyclohexanones; Haplorhini; Kupffer Cells; Lipoproteins, LDL; Lysine; Macaca mulatta; Metabolic Clearance Rate; Methylation; Rats; Receptors, Drug

1980
Spontaneous N epsilon-methylation of L-lysine by formaldehyde.
    Die Pharmazie, 1980, Volume: 35, Issue:1

    Topics: Chemical Phenomena; Chemistry; Chromatography, Thin Layer; Formaldehyde; Lysine; Magnetic Resonance Spectroscopy; Methylation; Models, Biological

1980
Methylation-like reaction of [3H-methyl]-N-5-trimethyllysine (TML) to chromatin components.
    Biochemical pharmacology, 1980, Oct-15, Volume: 29, Issue:20

    Topics: Animals; Chromatin; DNA; Lysine; Methylation; Mice; Molecular Weight; Neoplasms, Experimental

1980
Alteration of methylation patterns in rat liver histones following administration of ethionine, a liver carcinogen.
    Cancer research, 1981, Volume: 41, Issue:4

    Topics: Animals; Arginine; Cell Nucleus; Ethionine; Histone-Lysine N-Methyltransferase; Histones; Liver; Lysine; Male; Methionine; Methylation; Protein-Arginine N-Methyltransferases; Rats

1981
Analysis of radiomethylated N epsilon-methyllysines and other methylated amino acids by ion-exchange chromatography with fluorescent detection.
    Journal of chromatography, 1981, Jan-30, Volume: 205, Issue:2

    Topics: Amino Acids; Chromatography, Ion Exchange; Liver; Lysine; Methylation; Spectrometry, Fluorescence

1981
A modification of alpha-bungarotoxin amino group residues with retention of binding properties to isolated and membrane-bound acetylcholine receptor.
    Archives of biochemistry and biophysics, 1981, Apr-15, Volume: 208, Issue:1

    Topics: Animals; Bungarotoxins; Cell Membrane; Chemical Phenomena; Chemistry; Fishes; In Vitro Techniques; Lysine; Methylation; Receptors, Cholinergic; Structure-Activity Relationship

1981
Quantitation of methylated basic amino acids in biological fluid.
    Biochemical medicine, 1981, Volume: 25, Issue:3

    Topics: Adult; Amino Acids; Arginine; Autoanalysis; Chromatography, Ion Exchange; Humans; Lysine; Methylation

1981
Effects of protein modification procedures on the interaction between 25-hydroxyvitamin D and the human plasma binding protein for vitamin D and its metabolites.
    Biochemistry, 1981, Sep-29, Volume: 20, Issue:20

    Topics: 25-Hydroxyvitamin D 2; Arginine; Carrier Proteins; Ergocalciferols; Guanidine; Guanidines; Humans; Lysine; Methylation; Spectrophotometry, Ultraviolet; Structure-Activity Relationship; Vitamin D; Vitamin D-Binding Protein

1981
Reduced immunoregulatory potency of low density lipoproteins with selectively modified arginine and lysine residues of apolipoprotein B.
    Biochimica et biophysica acta, 1981, Sep-24, Volume: 665, Issue:3

    Topics: Amino Acids; Apolipoproteins; Apolipoproteins B; Arginine; Borohydrides; Cyclohexanones; Humans; Immunosuppression Therapy; Iodides; Lipoproteins, LDL; Lymphocyte Activation; Lymphocytes; Lysine; Methylation; Spectrometry, Fluorescence

1981
An efficient method for in vitro labeling proteins to high specific radioactivity using 3H-NaBH4 in dimethylformamide.
    Analytical biochemistry, 1981, Sep-01, Volume: 116, Issue:1

    Topics: Borohydrides; Dimethylformamide; Lysine; Methylation; Proteins; Radioisotope Dilution Technique; Serum Albumin, Bovine; Tritium

1981
Reductive methylation of the two 4,4'-diisothiocyanodihydrostilbene-2,2'-disulfonate-binding lysine residues of band 3, the human erythrocyte anion transport protein.
    The Journal of biological chemistry, 1982, Jul-10, Volume: 257, Issue:13

    Topics: 4-Acetamido-4'-isothiocyanatostilbene-2,2'-disulfonic Acid; 4,4'-Diisothiocyanostilbene-2,2'-Disulfonic Acid; Anion Exchange Protein 1, Erythrocyte; Binding Sites; Blood Proteins; Electrophoresis, Polyacrylamide Gel; Humans; Lysine; Methylation; Peptide Fragments; Protein Binding; Stilbenes

1982
Methylation of chicken fibroblast heat shock proteins at lysyl and arginyl residues.
    The Journal of biological chemistry, 1982, Jul-25, Volume: 257, Issue:14

    Topics: Animals; Arginine; Cells, Cultured; Chick Embryo; Drug Stability; Fibroblasts; Heat-Shock Proteins; Hot Temperature; Lysine; Methionine; Methylation; Molecular Weight; Proteins

1982
Methylation of elongation factor 1 alpha from the fungus Mucor.
    Proceedings of the National Academy of Sciences of the United States of America, 1982, Volume: 79, Issue:11

    Topics: Amino Acids; Fungal Proteins; Lysine; Macromolecular Substances; Methylation; Morphogenesis; Mucor; Peptide Elongation Factor 1; Peptide Elongation Factors; Peptide Fragments

1982
Abnormal myosin heavy chain variant associated with avian muscular dystrophy.
    Cell motility, 1981, Volume: 1, Issue:4

    Topics: Amino Acid Sequence; Animals; Gene Expression Regulation; Histidine; Lysine; Methylation; Muscular Dystrophy, Animal; Mutation; Myosins; Pedigree; Peptide Fragments; Protein Processing, Post-Translational

1981
Cytokine sensitivity and methylation of lysine in Rickettsia prowazekii EVir and interferon-resistant R. prowazekii strains.
    Infection and immunity, 1994, Volume: 62, Issue:8

    Topics: Cells, Cultured; Cytokines; Drug Resistance; Humans; Interferons; Lysine; Methylation; Rickettsia prowazekii

1994
Synthesis of nitrodiazirinyl derivatives of neurotoxin II from Naja naja oxiana and their interaction with the Torpedo californica nicotinic acetylcholine receptor.
    Journal of protein chemistry, 1995, Volume: 14, Issue:4

    Topics: Affinity Labels; Animals; Chromatography, High Pressure Liquid; Cobra Neurotoxin Proteins; Cross-Linking Reagents; Lysine; Magnetic Resonance Spectroscopy; Mass Spectrometry; Methylation; Oxidation-Reduction; Photochemistry; Receptors, Nicotinic; Torpedo; Trypsin; Ultraviolet Rays

1995
[The effect of methylating lysine residues on properties of complexes of myosin subfragment-1 with ADP and phosphate analogs].
    Doklady Akademii nauk, 1995, Volume: 341, Issue:5

    Topics: Adenosine Diphosphate; Animals; Lysine; Methylation; Muscle, Skeletal; Myosin Subfragments; Rabbits; Thermodynamics

1995
Polylysine domain of K-ras 4B protein is crucial for malignant transformation.
    Proceedings of the National Academy of Sciences of the United States of America, 1994, Dec-20, Volume: 91, Issue:26

    Topics: 3T3 Cells; Amino Acid Sequence; Animals; Cell Compartmentation; Cell Membrane; Cell Transformation, Neoplastic; In Vitro Techniques; Lysine; Methylation; Mice; Molecular Sequence Data; Mutagenesis, Site-Directed; Protein Prenylation; Protein Processing, Post-Translational; Proto-Oncogene Proteins p21(ras); Rats; Structure-Activity Relationship

1994
Reductive methylation and pKa determination of the lysine side chains in calbindin D9k.
    Journal of protein chemistry, 1994, Volume: 13, Issue:6

    Topics: Calbindins; Hydrogen-Ion Concentration; Lysine; Magnetic Resonance Spectroscopy; Methylation; S100 Calcium Binding Protein G

1994
Native like structure and stability of apo AI in a n-propanol/water solution as determined by 13C NMR.
    FEBS letters, 1995, Mar-13, Volume: 361, Issue:1

    Topics: 1-Propanol; Apolipoprotein A-I; Circular Dichroism; Humans; Hydrogen-Ion Concentration; Lysine; Magnetic Resonance Spectroscopy; Methylation; Protein Denaturation; Protein Structure, Secondary; Protein Structure, Tertiary

1995
The relationship between the trimethylation of lysine 77 and cytochrome c metabolism in Saccharomyces cerevisiae.
    The International journal of biochemistry, 1994, Volume: 26, Issue:5

    Topics: Amino Acid Sequence; Base Sequence; Binding Sites; Cloning, Molecular; Cytochrome c Group; DNA Restriction Enzymes; Drug Stability; Gene Transfer Techniques; Heme; Lysine; Methylation; Molecular Sequence Data; Mutagenesis, Site-Directed; Plasmids; Saccharomyces cerevisiae

1994
Effect of lysine methylation and other ATPase modulators on the active site of myosin subfragment 1.
    Proceedings of the National Academy of Sciences of the United States of America, 1994, Aug-30, Volume: 91, Issue:18

    Topics: Adenosine Diphosphate; Binding Sites; Cations; Hydrogen-Ion Concentration; In Vitro Techniques; Lysine; Methylation; Myosin Subfragments; Myosins; Osmolar Concentration; Structure-Activity Relationship

1994
Site-directed mutagenesis of alpha-tubulin. Reductive methylation studies of the Lys 394 region.
    Biophysical journal, 1993, Volume: 64, Issue:3

    Topics: Animals; Biophysical Phenomena; Biophysics; Cattle; Glutamates; Glutamic Acid; In Vitro Techniques; Lysine; Methylation; Microtubule Proteins; Mutagenesis, Site-Directed; Oxidation-Reduction; Tubulin

1993
Lysine residues involved in the hysteresis and in the regulatory sites of spinach ribulose 1,5-bisphosphate carboxylase/oxygenase.
    Journal of biochemistry, 1993, Volume: 114, Issue:5

    Topics: Amino Acid Sequence; Binding Sites; Chromatography, High Pressure Liquid; Enzyme Activation; Lysine; Methylation; Molecular Sequence Data; Pentosephosphates; Ribulose-Bisphosphate Carboxylase; Sequence Alignment; Sequence Homology, Amino Acid; Sugar Alcohols; Trypsin; Vegetables

1993
Carbon-13 NMR studies of the lysine side chains of calmodulin and its proteolytic fragments.
    Journal of protein chemistry, 1993, Volume: 12, Issue:6

    Topics: Amino Acid Sequence; Animals; Calmodulin; Carbon Isotopes; Cattle; Lysine; Magnetic Resonance Spectroscopy; Male; Methylation; Peptide Fragments; Protein Conformation; Testis; Trypsin

1993
Lysine methylation of mitochondrial ATP synthase subunit c stored in tissues of dogs with hereditary ceroid lipofuscinosis.
    The Journal of biological chemistry, 1994, Apr-01, Volume: 269, Issue:13

    Topics: Amino Acid Sequence; Animals; Brain; Dog Diseases; Dogs; Humans; Kidney; Lysine; Lysosomes; Macromolecular Substances; Methylation; Mitochondria; Molecular Sequence Data; Neuronal Ceroid-Lipofuscinoses; Proton-Translocating ATPases; Sheep

1994
CCK-A-selective tetrapeptides containing lys(N epsilon)-amide residues: favorable in vivo and in vitro effects of N-methylation at the aspartyl residue.
    Journal of medicinal chemistry, 1994, May-27, Volume: 37, Issue:11

    Topics: Amino Acid Sequence; Animals; Appetite Depressants; Aspartic Acid; Cerebral Cortex; Cholecystokinin; Eating; Guinea Pigs; Hydrolysis; Lysine; Methylation; Molecular Sequence Data; Oligopeptides; Pancreas; Phosphatidylinositols; Rats; Receptors, Cholecystokinin; Structure-Activity Relationship; Tetragastrin

1994
Ion pair formation involving methylated lysine side chains: a theoretical study.
    Proteins, 1994, Volume: 18, Issue:4

    Topics: Acetates; Ethylamines; Formates; Ions; Lysine; Mathematical Computing; Methylamines; Methylation; Models, Chemical; Models, Molecular; Models, Theoretical; Organophosphorus Compounds; Protein Conformation; Protein Processing, Post-Translational

1994
Conformation of apolipoprotein E in lipoproteins.
    The Journal of biological chemistry, 1993, Nov-05, Volume: 268, Issue:31

    Topics: Animals; Apolipoproteins E; Circular Dichroism; Dimyristoylphosphatidylcholine; Dogs; Humans; In Vitro Techniques; Lipoproteins; Lysine; Magnetic Resonance Spectroscopy; Methylation; Protein Conformation

1993
In vitro aging of calmodulin generates isoaspartate at multiple Asn-Gly and Asp-Gly sites in calcium-binding domains II, III, and IV.
    Protein science : a publication of the Protein Society, 1993, Volume: 2, Issue:10

    Topics: Amino Acid Sequence; Animals; Asparagine; Aspartic Acid; Binding Sites; Brain Chemistry; Calcium; Calmodulin; Cattle; Chromatography, High Pressure Liquid; Hydrogen-Ion Concentration; Lysine; Methylation; Molecular Sequence Data; Peptide Fragments; Protein Conformation; Protein D-Aspartate-L-Isoaspartate Methyltransferase; Protein Methyltransferases; Time Factors; Trypsin

1993
Structural consequences of reductive methylation of lysine residues in hen egg white lysozyme: an X-ray analysis at 1.8-A resolution.
    Biochemistry, 1993, Sep-21, Volume: 32, Issue:37

    Topics: Animals; Chickens; Crystallography; Lysine; Methylation; Muramidase; Oxidation-Reduction; Protein Structure, Secondary; Protein Structure, Tertiary; X-Ray Diffraction

1993
Kinetic characterization of reductively methylated myosin subfragment 1.
    Biochemistry, 1993, Sep-21, Volume: 32, Issue:37

    Topics: Actomyosin; Animals; Chickens; Kinetics; Lysine; Methylation; Myosin Subfragments; Myosins; Oxidation-Reduction; Spectrometry, Fluorescence; Structure-Activity Relationship

1993
Structural requirements for the binding of modified proteins to the scavenger receptor of macrophages.
    The Journal of biological chemistry, 1993, Mar-15, Volume: 268, Issue:8

    Topics: Apolipoproteins B; Humans; Immunoglobulin Fab Fragments; Immunoglobulin G; Lipoproteins, LDL; Lysine; Methylation; Oxidation-Reduction; Protein Binding; Protein Conformation; Receptors, Cell Surface; Receptors, Immunologic; Receptors, Scavenger; Serum Albumin; Serum Albumin, Bovine

1993
Dynamic methylation of alfalfa histone H3.
    The Journal of biological chemistry, 1993, Mar-05, Volume: 268, Issue:7

    Topics: Cells, Cultured; Chromatography, High Pressure Liquid; Histones; Lysine; Medicago sativa; Methylation

1993
Role of the charge pair aspartic acid-237-lysine-358 in the lactose permease of Escherichia coli.
    Biochemistry, 1993, Mar-30, Volume: 32, Issue:12

    Topics: Amino Acid Sequence; Aspartic Acid; Base Sequence; Biological Transport, Active; Cysteine; Electrochemistry; Enzyme Stability; Escherichia coli; Escherichia coli Proteins; Kinetics; Lactose; Lysine; Membrane Transport Modulators; Membrane Transport Proteins; Methylation; Molecular Sequence Data; Monosaccharide Transport Proteins; Mutagenesis, Site-Directed; Structure-Activity Relationship; Sulfhydryl Reagents; Symporters

1993
Characterization of yeast EF-1 alpha: non-conservation of post-translational modifications.
    Biochimica et biophysica acta, 1993, Apr-21, Volume: 1163, Issue:1

    Topics: Amino Acid Sequence; Cyanogen Bromide; Endopeptidases; Lysine; Methylation; Molecular Sequence Data; Peptide Elongation Factor 1; Peptide Elongation Factors; Protein Processing, Post-Translational; Saccharomyces cerevisiae; Sequence Alignment; Trypsin

1993
Opsin/all-trans-retinal complex activates transducin by different mechanisms than photolyzed rhodopsin.
    Biochemistry, 1996, Mar-05, Volume: 35, Issue:9

    Topics: Animals; Binding Sites; Cattle; Darkness; GTP-Binding Proteins; Hydrogen-Ion Concentration; Kinetics; Light; Lysine; Methylation; Photolysis; Retinaldehyde; Rhodopsin; Rod Cell Outer Segment; Rod Opsins; Schiff Bases; Spectrophotometry; Stereoisomerism; Transducin

1996
Surface labelling of the type I methyltransferase M.EcoR124I reveals lysine residues critical for DNA binding.
    Journal of molecular biology, 1996, Apr-26, Volume: 258, Issue:1

    Topics: alpha-MSH; Amino Acid Sequence; Amino Acids; Conserved Sequence; DNA; Lysine; Methylation; Molecular Sequence Data; Peptide Fragments; Protein Binding; Sequence Analysis; Site-Specific DNA-Methyltransferase (Adenine-Specific)

1996
Differential scanning calorimetric study of the complexes of modified myosin subfragment 1 with ADP and vanadate or beryllium fluoride.
    Journal of muscle research and cell motility, 1996, Volume: 17, Issue:4

    Topics: Adenosine Diphosphate; Animals; Beryllium; Calorimetry, Differential Scanning; Fluorides; Indicators and Reagents; Lysine; Methylation; Myosin Subfragments; Picrates; Rabbits; Structure-Activity Relationship; Sulfhydryl Compounds; Vanadates

1996
Structural evidence for an anion-directing track in the hen ovotransferrin N-lobe: implications for transferrin synergistic anion binding.
    Biochemistry, 1996, Nov-12, Volume: 35, Issue:45

    Topics: Amino Acid Sequence; Animals; Anions; Chickens; Conalbumin; Histidine; Lysine; Magnetic Resonance Spectroscopy; Mass Spectrometry; Methylation; Molecular Sequence Data; Peptide Fragments; Protein Binding; Protein Conformation; Protein Structure, Secondary; Pyruvates; Tyrosine

1996
Sequence requirement for trimethylation of yeast cytochrome c.
    Biochemistry, 1997, Mar-04, Volume: 36, Issue:9

    Topics: Amino Acid Sequence; Cytochrome c Group; Cytochromes c; Lysine; Methylation; Molecular Sequence Data; Mutagenesis, Site-Directed; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins

1997
Site-directed mutants of post-translationally modified sites of yeast eEF1A using a shuttle vector containing a chromogenic switch.
    Biochimica et biophysica acta, 1997, Feb-28, Volume: 1350, Issue:3

    Topics: beta-Galactosidase; Fungal Proteins; Genes, Reporter; Genetic Vectors; Kinetics; Lysine; Methylation; Mutagenesis, Site-Directed; Peptide Biosynthesis; Peptide Elongation Factor 1; Peptide Elongation Factors; Peptides; Phenotype; Protein Biosynthesis; Protein Processing, Post-Translational; RNA, Transfer, Amino Acyl; Saccharomyces cerevisiae

1997
Post-translational processing of rat ribosomal proteins. Ubiquitous methylation of Lys22 within the zinc-finger motif of RL40 (carboxy-terminal extension protein 52) and tissue-specific methylation of Lys4 in RL29.
    European journal of biochemistry, 1997, Jun-15, Volume: 246, Issue:3

    Topics: Amino Acid Sequence; Animals; Brain; Chromatography, High Pressure Liquid; Fungal Proteins; Liver; Lysine; Methylation; Molecular Sequence Data; Protein Precursors; Protein Processing, Post-Translational; Rats; Ribosomal Proteins; Subcellular Fractions; Thymus Gland; Ubiquitins; Zinc Fingers

1997
Oxidation of low density lipoprotein particles decreases their ability to bind to human aortic proteoglycans. Dependence on oxidative modification of the lysine residues.
    The Journal of biological chemistry, 1997, Aug-22, Volume: 272, Issue:34

    Topics: Animals; Aorta; Apolipoprotein B-100; Apolipoproteins B; Cell-Free System; Chondroitin Sulfates; Chromatography, Affinity; Copper Sulfate; Heparin; Humans; Lipoproteins, LDL; Lysine; Macrophages, Peritoneal; Malondialdehyde; Methylation; Mice; Oxidation-Reduction; Proteoglycans

1997
Thermodynamic characterization of non-sequence-specific DNA-binding by the Sso7d protein from Sulfolobus solfataricus.
    Journal of molecular biology, 1998, Mar-06, Volume: 276, Issue:4

    Topics: Archaeal Proteins; Base Sequence; Binding Sites; Calorimetry; Deuterium Oxide; DNA-Binding Proteins; DNA, Archaeal; Hydrogen-Ion Concentration; Lysine; Macromolecular Substances; Methylation; Osmotic Pressure; Poly dA-dT; Polydeoxyribonucleotides; Protein Binding; Spectrometry, Fluorescence; Sulfolobus; Temperature; Thermodynamics; Water

1998
Bacterial expression of a mitochondrial cytochrome c. Trimethylation of lys72 in yeast iso-1-cytochrome c and the alkaline conformational transition.
    Biochemistry, 1998, Apr-28, Volume: 37, Issue:17

    Topics: Alkalies; Bacterial Proteins; Cytochrome c Group; Cytochromes c; Electrochemistry; Electron Spin Resonance Spectroscopy; Escherichia coli; Lyases; Lysine; Magnetic Resonance Spectroscopy; Mass Spectrometry; Methylation; Mitochondria; Protein Conformation; Recombinant Proteins; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins; Spectrophotometry, Ultraviolet

1998
Methylated Nepsilon-dansyl-L-lysine as a fluorogenic reagent for the chiral separation of carboxylic acids.
    Journal of chromatography. B, Biomedical sciences and applications, 1998, Jun-12, Volume: 710, Issue:1-2

    Topics: Amino Acids; Carboxylic Acids; Chromatography, High Pressure Liquid; Fluorescent Dyes; Indicators and Reagents; Lysine; Methylation

1998
Dynamics of histone acetylation in Chlamydomonas reinhardtii.
    The Journal of biological chemistry, 1998, Oct-16, Volume: 273, Issue:42

    Topics: Acetates; Acetyl Coenzyme A; Acetylation; Animals; Chlamydomonas reinhardtii; Half-Life; Histone Deacetylase Inhibitors; Histones; Hydroxamic Acids; Kinetics; Lysine; Methylation; Protein Processing, Post-Translational

1998
Crystallization and improvement of crystal quality for x-ray diffraction of maltooligosyl trehalose synthase by reductive methylation of lysine residues.
    Acta crystallographica. Section D, Biological crystallography, 1999, Volume: 55, Issue:Pt 4

    Topics: Archaeal Proteins; Crystallization; Glucosyltransferases; Lysine; Methylation; Sulfolobus acidocaldarius; X-Ray Diffraction

1999
High-throughput mass spectrometric discovery of protein post-translational modifications.
    Journal of molecular biology, 1999, Jun-11, Volume: 289, Issue:3

    Topics: Acetylation; Amides; Amino Acid Sequence; Amino Acid Substitution; Cysteine; Escherichia coli; Image Processing, Computer-Assisted; Keratins; Lysine; Methionine; Methylation; Molecular Sequence Data; Oxidoreductases; Peptide Elongation Factor Tu; Peptide Mapping; Peroxidases; Peroxiredoxins; Phenylalanine; Protein Processing, Post-Translational; Software; Species Specificity; Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization; Tyrosine

1999
Protein aging by carboxymethylation of lysines generates sites for divalent metal and redox active copper binding: relevance to diseases of glycoxidative stress.
    Biochemical and biophysical research communications, 1999, Jul-05, Volume: 260, Issue:2

    Topics: Animals; Ascorbic Acid; Binding Sites; Biopolymers; Catalysis; Cations, Divalent; Collagen; Copper; Diabetes Mellitus, Experimental; Free Radicals; Glycation End Products, Advanced; Humans; Hydrogen Peroxide; Kidney Failure, Chronic; Lysine; Methylation; Oxidation-Reduction; Oxidative Stress; Peroxidase; Rats; Rats, Sprague-Dawley; Serine

1999
Measurement of carnitine precursors, epsilon-trimethyllysine and gamma-butyrobetaine in human serum by tandem mass spectrometry.
    Journal of chromatography. B, Biomedical sciences and applications, 1999, Aug-06, Volume: 731, Issue:1

    Topics: Betaine; Carnitine; Humans; Lysine; Mass Spectrometry; Methylation; Reference Standards; Sensitivity and Specificity

1999
Methylation of histone H3 at lysine 4 is highly conserved and correlates with transcriptionally active nuclei in Tetrahymena.
    Proceedings of the National Academy of Sciences of the United States of America, 1999, Dec-21, Volume: 96, Issue:26

    Topics: Acetyltransferases; Amino Acid Sequence; Animals; Cell Nucleus; HeLa Cells; Histone Acetyltransferases; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation; Methyltransferases; Molecular Sequence Data; Protein Methyltransferases; Protein Processing, Post-Translational; Saccharomyces cerevisiae Proteins; Species Specificity; Tetrahymena thermophila; Transcription, Genetic; Yeasts

1999
Structural requirements for N-trimethylation of lysine 115 of calmodulin.
    The Journal of biological chemistry, 2000, Jun-23, Volume: 275, Issue:25

    Topics: Amino Acid Sequence; Base Sequence; Calmodulin; Lysine; Methylation; Models, Molecular; Molecular Sequence Data; Mutagenesis, Site-Directed; Protein Conformation

2000
Cytochrome c methyltransferase, Ctm1p, of yeast.
    The Journal of biological chemistry, 2000, Jul-07, Volume: 275, Issue:27

    Topics: Amino Acid Sequence; Amino Acids; Apoproteins; Base Sequence; Cell Fractionation; Cytochrome c Group; Cytochromes c; Cytosol; Fungal Proteins; Histone-Lysine N-Methyltransferase; Lysine; Methylation; Molecular Sequence Data; Mutation; RNA, Messenger; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins; Sequence Alignment; Spectrophotometry

2000
Determinants of cytochrome c pro-apoptotic activity. The role of lysine 72 trimethylation.
    The Journal of biological chemistry, 2000, May-26, Volume: 275, Issue:21

    Topics: Amino Acid Sequence; Animals; Apoptosis; Cytochrome c Group; Cytochromes c; Horses; Lysine; Methylation; Mitochondria; Models, Molecular; Molecular Sequence Data; Oocytes; Peptide Hydrolases; Protein Isoforms; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins; Sequence Homology, Amino Acid; Xenopus

2000
Pellicle precursor protein crosslinking characterization of an adduct between acidic proline-rich protein (PRP-1) and statherin generated by transglutaminase.
    Journal of dental research, 2000, Volume: 79, Issue:4

    Topics: Amino Acids; Chromatography, High Pressure Liquid; Cross-Linking Reagents; Dental Deposits; Dental Pellicle; Electrophoresis, Polyacrylamide Gel; Glutamine; Humans; Hydrolysis; Lysine; Mass Spectrometry; Methylation; Molecular Weight; Peptides; Proline; Proline-Rich Protein Domains; Protein Precursors; Protein Processing, Post-Translational; Proteins; Salivary Proteins and Peptides; Transglutaminases

2000
Regulation of chromatin structure by site-specific histone H3 methyltransferases.
    Nature, 2000, Aug-10, Volume: 406, Issue:6796

    Topics: Amino Acid Sequence; Animals; Catalytic Domain; Chromatin; Drosophila; HeLa Cells; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Humans; Lysine; Methylation; Methyltransferases; Mice; Molecular Sequence Data; Phosphorylation; Protein Conformation; Protein Methyltransferases; Protein Structure, Tertiary; Recombinant Proteins; Repressor Proteins; Sequence Homology, Amino Acid; Serine; Substrate Specificity

2000
X-ray crystallographic analysis of pokeweed antiviral protein-II after reductive methylation of lysine residues.
    Biochemical and biophysical research communications, 2000, Aug-28, Volume: 275, Issue:2

    Topics: Crystallography, X-Ray; Lysine; Methylation; N-Glycosyl Hydrolases; Plant Proteins; Protein Conformation; Ribosome Inactivating Proteins, Type 1

2000
Methylation of histone H3 lysine 9 creates a binding site for HP1 proteins.
    Nature, 2001, Mar-01, Volume: 410, Issue:6824

    Topics: Amino Acid Sequence; Animals; Binding Sites; Chromatin; DNA-Binding Proteins; Fibroblasts; Gene Expression Regulation; Hepatocyte Nuclear Factor 1; Hepatocyte Nuclear Factor 1-alpha; Hepatocyte Nuclear Factor 1-beta; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation; Methyltransferases; Mice; Molecular Sequence Data; Mutation; Nuclear Proteins; Protein Binding; Protein Methyltransferases; Repressor Proteins; Transcription Factors

2001
Selective recognition of methylated lysine 9 on histone H3 by the HP1 chromo domain.
    Nature, 2001, Mar-01, Volume: 410, Issue:6824

    Topics: Amino Acid Sequence; Cell Cycle Proteins; Cell Line; Chromatin; Chromobox Protein Homolog 5; Chromosomal Proteins, Non-Histone; Fungal Proteins; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation; Methyltransferases; Molecular Sequence Data; Protein Structure, Tertiary; Recombinant Fusion Proteins; Saccharomyces cerevisiae Proteins; Schizosaccharomyces; Schizosaccharomyces pombe Proteins; Transcription Factors

2001
Physical association between the histone acetyl transferase CBP and a histone methyl transferase.
    EMBO reports, 2001, Volume: 2, Issue:1

    Topics: Acetylation; Acetyltransferases; Amino Acids; Cell Cycle Proteins; Cell Nucleus; CREB-Binding Protein; HeLa Cells; Histone Acetyltransferases; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation; Methyltransferases; Nuclear Proteins; Nucleosomes; p300-CBP Transcription Factors; Precipitin Tests; Protein Binding; Protein Methyltransferases; Saccharomyces cerevisiae Proteins; Trans-Activators; Transcription Factors; Transcriptional Activation

2001
Role of histone H3 lysine 9 methylation in epigenetic control of heterochromatin assembly.
    Science (New York, N.Y.), 2001, Apr-06, Volume: 292, Issue:5514

    Topics: Acetylation; Cell Cycle Proteins; Centromere; Chromosomes, Fungal; Fungal Proteins; Gene Silencing; Genes, Fungal; Heterochromatin; Histone Deacetylases; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Histones; Lysine; Methylation; Methyltransferases; Mutation; Protein Methyltransferases; Protein Structure, Tertiary; Recombinant Proteins; Saccharomyces cerevisiae Proteins; Schizosaccharomyces; Schizosaccharomyces pombe Proteins; Transcription Factors

2001
Molecular biology. The histone modification circus.
    Science (New York, N.Y.), 2001, Apr-06, Volume: 292, Issue:5514

    Topics: Acetylation; Cell Cycle Proteins; Centromere; Chromatin; Fungal Proteins; Gene Expression Regulation, Fungal; Gene Silencing; Heterochromatin; Histone Deacetylases; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Histones; Lysine; Methylation; Methyltransferases; Phosphorylation; Protein Binding; Protein Methyltransferases; Protein Structure, Tertiary; Saccharomyces cerevisiae Proteins; Schizosaccharomyces; Schizosaccharomyces pombe Proteins; Serine; Transcription Factors

2001
Set domain-containing protein, G9a, is a novel lysine-preferring mammalian histone methyltransferase with hyperactivity and specific selectivity to lysines 9 and 27 of histone H3.
    The Journal of biological chemistry, 2001, Jul-06, Volume: 276, Issue:27

    Topics: Amino Acid Sequence; Catalysis; Chromatin; Electrophoresis, Polyacrylamide Gel; Histones; Humans; Lysine; Methylation; Methyltransferases; Molecular Sequence Data; Protein Conformation; Repressor Proteins; Substrate Specificity

2001
Chemical modification of lysine by reductive methylation. A probe for residues involved in DNA binding.
    Methods in molecular biology (Clifton, N.J.), 2001, Volume: 148

    Topics: Chromatography, High Pressure Liquid; DNA; DNA-Binding Proteins; Formaldehyde; Indicators and Reagents; Kinetics; Lysine; Methylation; Methylene Chloride; Oxidation-Reduction; Site-Specific DNA-Methyltransferase (Adenine-Specific); Tritium

2001
Methylation of histone H4 at arginine 3 facilitating transcriptional activation by nuclear hormone receptor.
    Science (New York, N.Y.), 2001, Aug-03, Volume: 293, Issue:5531

    Topics: Acetylation; Amino Acid Sequence; Animals; Arginine; Binding Sites; Cell Nucleus; HeLa Cells; Histones; Humans; Hydroxamic Acids; Intracellular Signaling Peptides and Proteins; Lysine; Methylation; Methyltransferases; Molecular Sequence Data; Mutation; Oocytes; Protein-Arginine N-Methyltransferases; Receptors, Androgen; Recombinant Proteins; S-Adenosylmethionine; Transcriptional Activation; Xenopus

2001
Rb targets histone H3 methylation and HP1 to promoters.
    Nature, 2001, Aug-02, Volume: 412, Issue:6846

    Topics: Amino Acid Sequence; Animals; Cell Line; Chromobox Protein Homolog 5; Chromosomal Proteins, Non-Histone; Cyclin E; Escherichia coli; Female; HeLa Cells; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation; Methyltransferases; Mice; Molecular Sequence Data; Promoter Regions, Genetic; Protein Binding; Protein Methyltransferases; Recombinant Fusion Proteins; Repressor Proteins; Retinoblastoma Protein

2001
Correlation between histone lysine methylation and developmental changes at the chicken beta-globin locus.
    Science (New York, N.Y.), 2001, Sep-28, Volume: 293, Issue:5539

    Topics: Acetylation; Animals; Avian Proteins; Brain; Carrier Proteins; Chick Embryo; Chromatin; Erythrocytes; Erythroid Precursor Cells; Erythropoiesis; Folate Receptors, GPI-Anchored; Gene Expression Regulation, Developmental; Gene Silencing; Globins; Histones; Locus Control Region; Lysine; Membrane Proteins; Methylation; Receptors, Cell Surface; Receptors, Odorant; Transcriptional Activation

2001
Transitions in distinct histone H3 methylation patterns at the heterochromatin domain boundaries.
    Science (New York, N.Y.), 2001, Aug-10, Volume: 293, Issue:5532

    Topics: DNA, Fungal; Euchromatin; Fungal Proteins; Gene Silencing; Genes, Fungal; Genes, Mating Type, Fungal; Heterochromatin; Histones; Lysine; Methylation; Models, Genetic; Precipitin Tests; Repetitive Sequences, Nucleic Acid; Saccharomyces cerevisiae Proteins; Schizosaccharomyces; Transcription Factors; Transcription, Genetic

2001
Physical and functional association of SU(VAR)3-9 and HDAC1 in Drosophila.
    EMBO reports, 2001, Volume: 2, Issue:10

    Topics: Animals; Blotting, Western; Chromatin; Drosophila; Fungal Proteins; Gene Silencing; Genes, Dominant; Genome; Histone Deacetylase 1; Histone Deacetylases; Histones; Lysine; Methylation; Methyltransferases; Mutation; Precipitin Tests; Protein Binding; Protein Structure, Tertiary; Recombinant Proteins; Salts; Transcription, Genetic

2001
Molecular biology. Methylation talk between histones and DNA.
    Science (New York, N.Y.), 2001, Dec-07, Volume: 294, Issue:5549

    Topics: 5-Methylcytosine; Acetylation; Amino Acid Substitution; Animals; Cytosine; DNA Methylation; DNA, Fungal; Gene Silencing; Histones; Lysine; Methylation; Methyltransferases; Mutation; Neurospora crassa

2001
Differentially methylated forms of histone H3 show unique association patterns with inactive human X chromosomes.
    Nature genetics, 2002, Volume: 30, Issue:1

    Topics: Animals; Cells, Cultured; CHO Cells; Cricetinae; Cricetulus; Dosage Compensation, Genetic; Female; Heterochromatin; Histones; Humans; Hybrid Cells; In Situ Hybridization, Fluorescence; Lysine; Metaphase; Methylation; Microscopy, Fluorescence; Precipitin Tests; Protein Isoforms; X Chromosome

2002
Histone H3 lysine 9 methylation is an epigenetic imprint of facultative heterochromatin.
    Nature genetics, 2002, Volume: 30, Issue:1

    Topics: Amniocentesis; Aneuploidy; Animals; Binding Sites; Cells, Cultured; Chromosome Painting; Chromosomes, Human, Pair 4; Dosage Compensation, Genetic; Female; Fibroblasts; Gene Expression Regulation; Heterochromatin; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Male; Metaphase; Methylation; Methyltransferases; Mice; Microscopy, Fluorescence; Mouth Mucosa; Precipitin Tests; Pregnancy; Protein Binding; Protein Isoforms; Protein Methyltransferases; Repressor Proteins; Translocation, Genetic; X Chromosome

2002
The Saccharomyces cerevisiae Set1 complex includes an Ash2 homologue and methylates histone 3 lysine 4.
    The EMBO journal, 2001, Dec-17, Volume: 20, Issue:24

    Topics: Amino Acid Sequence; Base Sequence; Blotting, Southern; DNA Primers; DNA-Binding Proteins; Histone-Lysine N-Methyltransferase; Histones; Lysine; Methylation; Molecular Sequence Data; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins; Sequence Homology, Amino Acid; Transcription Factors

2001
Hormone-dependent, CARM1-directed, arginine-specific methylation of histone H3 on a steroid-regulated promoter.
    Current biology : CB, 2001, Dec-11, Volume: 11, Issue:24

    Topics: Acetylation; Arginine; Fluorescent Antibody Technique; Histones; Hormones; Lysine; Mammary Tumor Virus, Mouse; Methylation; Phosphorylation; Precipitin Tests; Promoter Regions, Genetic; Protein-Arginine N-Methyltransferases; Serine; Steroids

2001
Histone H3 lysine 4 methylation is mediated by Set1 and required for cell growth and rDNA silencing in Saccharomyces cerevisiae.
    Genes & development, 2001, Dec-15, Volume: 15, Issue:24

    Topics: Animals; Antibody Formation; Blotting, Western; Cell Division; DNA Primers; DNA-Binding Proteins; DNA, Bacterial; DNA, Ribosomal; Fungal Proteins; Gene Silencing; Genetic Vectors; Heterochromatin; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Histones; Lysine; Methylation; Methyltransferases; Mutation; Nucleosomes; Polymerase Chain Reaction; Precipitin Tests; Protein Methyltransferases; Rabbits; RNA Polymerase III; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins; Transcription Factors

2001
A trithorax-group complex purified from Saccharomyces cerevisiae is required for methylation of histone H3.
    Proceedings of the National Academy of Sciences of the United States of America, 2002, Jan-08, Volume: 99, Issue:1

    Topics: Animals; Caenorhabditis elegans; Caenorhabditis elegans Proteins; Chromatin; DNA-Binding Proteins; Dosage Compensation, Genetic; Drosophila melanogaster; Drosophila Proteins; Electrophoresis, Polyacrylamide Gel; Histone-Lysine N-Methyltransferase; Histones; Lysine; Methylation; Models, Genetic; Mutation; Nuclear Proteins; Phenotype; Protein Binding; Protein Structure, Tertiary; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins; Sex Factors; Transcription Factors; X Chromosome

2002
Purification and functional characterization of a histone H3-lysine 4-specific methyltransferase.
    Molecular cell, 2001, Volume: 8, Issue:6

    Topics: Acetylation; Acetyltransferases; Amino Acid Sequence; Animals; Binding, Competitive; Cell Cycle Proteins; DNA, Complementary; Gene Silencing; HeLa Cells; Heterochromatin; Histone Acetyltransferases; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation; Methyltransferases; Mice; Molecular Sequence Data; Molecular Weight; Nucleosomes; p300-CBP Transcription Factors; Protein Methyltransferases; Protein Structure, Tertiary; Substrate Specificity; Transcription Factors

2001
COMPASS, a histone H3 (Lysine 4) methyltransferase required for telomeric silencing of gene expression.
    The Journal of biological chemistry, 2002, Mar-29, Volume: 277, Issue:13

    Topics: Chromosomes, Fungal; Gene Silencing; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Lysine; Methylation; Methyltransferases; Protein Methyltransferases; Saccharomyces cerevisiae; Telomere

2002
Histone H3 lysine 9 methylation occurs rapidly at the onset of random X chromosome inactivation.
    Current biology : CB, 2002, Feb-05, Volume: 12, Issue:3

    Topics: Cell Differentiation; Dosage Compensation, Genetic; Female; Gene Silencing; Histones; Humans; In Situ Hybridization, Fluorescence; Lysine; Metaphase; Methylation; Microscopy, Fluorescence; Stem Cells; Time Factors; X Chromosome; Y Chromosome

2002
Histone H3 lysine 4 methylation disrupts binding of nucleosome remodeling and deacetylase (NuRD) repressor complex.
    The Journal of biological chemistry, 2002, Apr-05, Volume: 277, Issue:14

    Topics: Acetylation; Blotting, Western; Cell Nucleus; Electrophoresis, Polyacrylamide Gel; HeLa Cells; Histone Deacetylases; Histones; Humans; Lysine; Mass Spectrometry; Methylation; Mi-2 Nucleosome Remodeling and Deacetylase Complex; Peptides; Precipitin Tests; Protein Binding; Protein Structure, Tertiary; Transcription, Genetic

2002
Structure of HP1 chromodomain bound to a lysine 9-methylated histone H3 tail.
    Science (New York, N.Y.), 2002, Mar-15, Volume: 295, Issue:5562

    Topics: Amino Acid Motifs; Amino Acid Sequence; Chromobox Protein Homolog 5; Chromosomal Proteins, Non-Histone; Crystallography, X-Ray; Drosophila Proteins; Histones; Hydrogen Bonding; Lysine; Methylation; Models, Molecular; Molecular Sequence Data; Mutagenesis; Peptides; Point Mutation; Protein Binding; Protein Conformation; Protein Structure, Secondary; Protein Structure, Tertiary; Sequence Alignment

2002
SETDB1: a novel KAP-1-associated histone H3, lysine 9-specific methyltransferase that contributes to HP1-mediated silencing of euchromatic genes by KRAB zinc-finger proteins.
    Genes & development, 2002, Apr-15, Volume: 16, Issue:8

    Topics: Animals; Cell Line; Chromobox Protein Homolog 5; Chromosomal Proteins, Non-Histone; DNA-Binding Proteins; Euchromatin; Fluorescent Antibody Technique, Indirect; Gene Silencing; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Macromolecular Substances; Methylation; Mice; Molecular Sequence Data; Nuclear Proteins; Protein Binding; Protein Methyltransferases; Protein Structure, Tertiary; Repressor Proteins; Sequence Homology, Amino Acid; Substrate Specificity; Transcription Factors; Tripartite Motif-Containing Protein 28; Two-Hybrid System Techniques; Zinc Fingers

2002
Protein N-methyltransferase assays in the study of gene transcription.
    Methods (San Diego, Calif.), 2002, Volume: 26, Issue:3

    Topics: Amino Acid Sequence; Animals; Arginine; Drosophila; HeLa Cells; Histones; Humans; Lysine; Methylation; Methyltransferases; Molecular Biology; Molecular Sequence Data; Peptides; Recombinant Fusion Proteins; Transcription, Genetic

2002
Heterochromatin, HP1 and methylation at lysine 9 of histone H3 in animals.
    Chromosoma, 2002, Volume: 111, Issue:1

    Topics: Animals; Bisbenzimidazole; Chromobox Protein Homolog 5; Chromosomal Proteins, Non-Histone; DNA; Drosophila; Female; Fluorescent Antibody Technique; Gene Silencing; Genomic Imprinting; Heterochromatin; Histones; Lysine; Male; Methylation; Mice; Microscopy, Fluorescence; Oocytes; Spermatozoa

2002
Methylation of histone H3 by COMPASS requires ubiquitination of histone H2B by Rad6.
    The Journal of biological chemistry, 2002, Aug-09, Volume: 277, Issue:32

    Topics: DNA, Ribosomal; Electrophoresis, Polyacrylamide Gel; Gene Silencing; Histones; Ligases; Lysine; Methylation; Models, Biological; Mutation; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins; Ubiquitin; Ubiquitin-Conjugating Enzymes

2002
Dependence of heterochromatic histone H3 methylation patterns on the Arabidopsis gene DDM1.
    Science (New York, N.Y.), 2002, Sep-13, Volume: 297, Issue:5588

    Topics: Amino Acid Sequence; Animals; Arabidopsis; Arabidopsis Proteins; DNA Methylation; DNA Transposable Elements; DNA-Binding Proteins; DNA, Plant; Gene Expression; Gene Expression Profiling; Gene Silencing; Genes, Plant; Heterochromatin; Histones; Humans; Lysine; Methylation; Molecular Sequence Data; Reverse Transcriptase Polymerase Chain Reaction; Sequence Alignment; Transcription Factors

2002
Lysine methylation within the globular domain of histone H3 by Dot1 is important for telomeric silencing and Sir protein association.
    Genes & development, 2002, Jun-15, Volume: 16, Issue:12

    Topics: Amino Acid Sequence; Animals; Blotting, Western; Cattle; Crystallography, X-Ray; Fungal Proteins; Gene Silencing; Histone Deacetylases; Histone-Lysine N-Methyltransferase; Histones; Lysine; Methylation; Molecular Sequence Data; Mutation; Nuclear Proteins; Precipitin Tests; Protein Binding; Protein Structure, Tertiary; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins; Sequence Homology, Amino Acid; Silent Information Regulator Proteins, Saccharomyces cerevisiae; Sirtuin 2; Sirtuins; Telomere; Thymus Gland; Trans-Activators

2002
A mark in the core: silence no more!
    Molecular cell, 2002, Volume: 9, Issue:6

    Topics: Chromatin; DNA Replication; Gene Silencing; Histone-Lysine N-Methyltransferase; Histones; Lysine; Methylation; Models, Genetic; Nuclear Proteins; Nucleosomes; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins

2002
PR-Set7 is a nucleosome-specific methyltransferase that modifies lysine 20 of histone H4 and is associated with silent chromatin.
    Molecular cell, 2002, Volume: 9, Issue:6

    Topics: Acetylation; Amino Acid Sequence; Animals; Chromatin; Drosophila melanogaster; Female; HeLa Cells; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Male; Methylation; Methyltransferases; Microscopy, Fluorescence; Molecular Sequence Data; Nucleosomes; Protein Methyltransferases; Recombinant Fusion Proteins; Sequence Alignment

2002
Methylation of H3-lysine 79 is mediated by a new family of HMTases without a SET domain.
    Current biology : CB, 2002, Jun-25, Volume: 12, Issue:12

    Topics: Amino Acid Sequence; Cell Cycle; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation; Methyltransferases; Molecular Sequence Data; Protein Methyltransferases; Protein Structure, Tertiary; Sequence Alignment; Substrate Specificity; Yeasts

2002
Identification of acetylation and methylation sites of histone H3 from chicken erythrocytes by high-accuracy matrix-assisted laser desorption ionization-time-of-flight, matrix-assisted laser desorption ionization-postsource decay, and nanoelectrospray ion
    Analytical biochemistry, 2002, Jul-15, Volume: 306, Issue:2

    Topics: Acetylation; Acetyltransferases; Animals; Chickens; Chromatography, High Pressure Liquid; Erythrocytes; Histones; Lysine; Methylation; Methyltransferases; Spectrometry, Mass, Electrospray Ionization; Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization; Trypsin

2002
G9a histone methyltransferase plays a dominant role in euchromatic histone H3 lysine 9 methylation and is essential for early embryogenesis.
    Genes & development, 2002, Jul-15, Volume: 16, Issue:14

    Topics: Acetylation; Animals; Embryonic and Fetal Development; Euchromatin; Gene Targeting; Germ Cells; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Histones; Lysine; Methylation; Methyltransferases; Mice; Mice, Inbred C57BL; Mice, Knockout; Protein Methyltransferases; Repressor Proteins; Transcription, Genetic

2002
Mycobacterial heparin-binding hemagglutinin and laminin-binding protein share antigenic methyllysines that confer resistance to proteolysis.
    Proceedings of the National Academy of Sciences of the United States of America, 2002, Aug-06, Volume: 99, Issue:16

    Topics: Adhesins, Bacterial; Animals; Antigens, Bacterial; Binding Sites; Bronchoalveolar Lavage Fluid; Epitopes, B-Lymphocyte; Hemagglutinins; Lectins; Lysine; Methylation; Mice; Mycobacterium bovis; Mycobacterium smegmatis; Mycobacterium tuberculosis; Protein O-Methyltransferase; Protein Processing, Post-Translational; Receptors, Laminin; Serine Endopeptidases; Trypsin

2002
Postsynthetic trimethylation of histone H4 at lysine 20 in mammalian tissues is associated with aging.
    The Journal of biological chemistry, 2002, Oct-18, Volume: 277, Issue:42

    Topics: Aging; Amino Acid Sequence; Animals; Cell Line; Chromatography, High Pressure Liquid; Histones; Humans; Lysine; Mass Spectrometry; Metalloendopeptidases; Methylation; Molecular Sequence Data; Protein Structure, Tertiary; Rats; Serine Endopeptidases; Time Factors

2002
Ubiquitination of histone H2B by Rad6 is required for efficient Dot1-mediated methylation of histone H3 lysine 79.
    The Journal of biological chemistry, 2002, Sep-20, Volume: 277, Issue:38

    Topics: Histone-Lysine N-Methyltransferase; Histones; Ligases; Lysine; Methylation; Nuclear Proteins; Nucleosomes; Saccharomyces cerevisiae Proteins; Ubiquitin; Ubiquitin-Conjugating Enzymes

2002
Regulation of heterochromatic silencing and histone H3 lysine-9 methylation by RNAi.
    Science (New York, N.Y.), 2002, Sep-13, Volume: 297, Issue:5588

    Topics: Centromere; Chromosomal Proteins, Non-Histone; DNA Methylation; DNA Transposable Elements; Endoribonucleases; Gene Deletion; Gene Silencing; Genes, Fungal; Heterochromatin; Histones; Lysine; Methylation; Models, Genetic; Repetitive Sequences, Nucleic Acid; Ribonuclease III; RNA-Dependent RNA Polymerase; RNA, Double-Stranded; RNA, Fungal; RNA, Small Interfering; RNA, Untranslated; Schizosaccharomyces; Schizosaccharomyces pombe Proteins; Transcription, Genetic; Transgenes

2002
Molecular biology. RNAi and heterochromatin--a hushed-up affair.
    Science (New York, N.Y.), 2002, Sep-13, Volume: 297, Issue:5588

    Topics: Animals; Centromere; Chromosomal Proteins, Non-Histone; DNA Transposable Elements; Dosage Compensation, Genetic; Gene Silencing; Genes, Fungal; Heterochromatin; Histones; Lysine; Methylation; Repetitive Sequences, Nucleic Acid; RNA, Double-Stranded; RNA, Fungal; RNA, Small Interfering; RNA, Untranslated; Schizosaccharomyces; Schizosaccharomyces pombe Proteins; Transcription, Genetic

2002
Histone H3 lysine 4 methylation is mediated by Set1 and promotes maintenance of active chromatin states in fission yeast.
    Proceedings of the National Academy of Sciences of the United States of America, 2002, Dec-10, Volume: 99 Suppl 4

    Topics: Cell Cycle; Chromatin; Fluorescent Antibody Technique; Histones; Lysine; Methylation; Schizosaccharomyces

2002
Dynamic changes in histone H3 Lys 9 methylation occurring at tightly regulated inducible inflammatory genes.
    Genes & development, 2002, Sep-01, Volume: 16, Issue:17

    Topics: Cells, Cultured; Chemokine CCL19; Chemokine CCL21; Chemokines, CC; Dendritic Cells; Gene Expression Regulation; Histones; Humans; Inflammation; Lipopolysaccharides; Lysine; Methylation; Promoter Regions, Genetic; RNA Polymerase II; Transcriptional Activation

2002
Mitotic-specific methylation of histone H4 Lys 20 follows increased PR-Set7 expression and its localization to mitotic chromosomes.
    Genes & development, 2002, Sep-01, Volume: 16, Issue:17

    Topics: Acetylation; Cell Cycle; Chromosomes; HeLa Cells; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation; Methyltransferases; Mitosis; Protein Methyltransferases; S Phase

2002
Methylation of histone h3 at lysine 9 targets programmed DNA elimination in tetrahymena.
    Cell, 2002, Sep-20, Volume: 110, Issue:6

    Topics: Amino Acid Sequence; Animals; Chromatin; Chromobox Protein Homolog 5; Chromosomal Proteins, Non-Histone; DNA-Binding Proteins; DNA, Protozoan; Escherichia coli; Gene Silencing; Histones; In Vitro Techniques; Lysine; Methylation; Molecular Sequence Data; Nuclear Proteins; Phosphoproteins; Protozoan Proteins; Recombinant Proteins; Sequence Alignment; Sequence Deletion; Tetrahymena thermophila

2002
Role of histone H3 lysine 27 methylation in Polycomb-group silencing.
    Science (New York, N.Y.), 2002, Nov-01, Volume: 298, Issue:5595

    Topics: Animals; Carrier Proteins; Cell Cycle Proteins; Chromatin; DNA-Binding Proteins; Drosophila; Drosophila Proteins; Enhancer of Zeste Homolog 2 Protein; Gene Silencing; Genes, Homeobox; HeLa Cells; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Histones; Homeodomain Proteins; Humans; Lysine; Methylation; Methyltransferases; Nuclear Proteins; Nucleosomes; Peptide Mapping; Polycomb Repressive Complex 1; Polycomb Repressive Complex 2; Precipitin Tests; Protein Methyltransferases; Proteins; Repressor Proteins; Response Elements; RNA Interference; Temperature; Transcription Factors

2002
Active genes are tri-methylated at K4 of histone H3.
    Nature, 2002, Sep-26, Volume: 419, Issue:6905

    Topics: Antibodies; DNA-Binding Proteins; Gene Expression Profiling; Gene Expression Regulation, Fungal; Genes, Fungal; Histone-Lysine N-Methyltransferase; Histones; Inositol; Lysine; Methionine; Methylation; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins; Transcription Factors; Transcription, Genetic

2002
cis-acting DNA from fission yeast centromeres mediates histone H3 methylation and recruitment of silencing factors and cohesin to an ectopic site.
    Current biology : CB, 2002, Oct-01, Volume: 12, Issue:19

    Topics: Binding Sites; Cell Cycle Proteins; Centromere; Chromatin; Chromosomal Proteins, Non-Histone; Cohesins; DNA; Fungal Proteins; Genes, Reporter; Histones; Lysine; Methylation; Nuclear Proteins; Plasmids; Recombination, Genetic; Repressor Proteins; Schizosaccharomyces; Schizosaccharomyces pombe Proteins; Silencer Elements, Transcriptional

2002
Heterogeneity in the modification and involvement of chromatin components of the CpG island of the silenced human CDH1 gene in cancer cells.
    Nucleic acids research, 2002, Nov-01, Volume: 30, Issue:21

    Topics: Acetylation; Cadherins; Chromatin; Chromosomal Proteins, Non-Histone; CpG Islands; DNA Methylation; DNA-Binding Proteins; Gene Silencing; Histones; Humans; Lysine; Methyl-CpG-Binding Protein 2; Methylation; Neoplasms; Promoter Regions, Genetic; Protein Binding; Repressor Proteins; Tumor Cells, Cultured

2002
Histone H3-lysine 9 methylation is associated with aberrant gene silencing in cancer cells and is rapidly reversed by 5-aza-2'-deoxycytidine.
    Cancer research, 2002, Nov-15, Volume: 62, Issue:22

    Topics: Acetylation; Antimetabolites, Antineoplastic; Azacitidine; Culture Techniques; Cyclin-Dependent Kinase Inhibitor p16; Decitabine; DNA Methylation; Gene Silencing; Histones; Humans; Lysine; Methylation; Precipitin Tests; Tumor Cells, Cultured; Tumor Suppressor Protein p14ARF; Urinary Bladder Neoplasms

2002
Activating signal cointegrator 2 belongs to a novel steady-state complex that contains a subset of trithorax group proteins.
    Molecular and cellular biology, 2003, Volume: 23, Issue:1

    Topics: Amino Acid Motifs; Amino Acid Sequence; Animals; Carrier Proteins; Cation Transport Proteins; Cell Nucleus; DNA-Binding Proteins; Drosophila Proteins; HeLa Cells; Histones; Humans; Intracellular Signaling Peptides and Proteins; Lysine; Macromolecular Substances; Methylation; Molecular Sequence Data; Nuclear Proteins; Nuclear Receptor Coactivators; Receptors, Retinoic Acid; Saccharomyces cerevisiae Proteins; Sequence Homology, Amino Acid; Transcription Factors; Tubulin

2003
Critical role of histone methylation in tumor suppressor gene silencing in colorectal cancer.
    Molecular and cellular biology, 2003, Volume: 23, Issue:1

    Topics: Adaptor Proteins, Signal Transducing; Azacitidine; Carrier Proteins; Colorectal Neoplasms; Cyclin-Dependent Kinase Inhibitor p16; Decitabine; DNA Methylation; Enzyme Inhibitors; Gene Silencing; Genes, Tumor Suppressor; Histone Deacetylase Inhibitors; Histones; Humans; Hydroxamic Acids; Lysine; Methylation; MutL Protein Homolog 1; Neoplasm Proteins; Nuclear Proteins; O(6)-Methylguanine-DNA Methyltransferase; Precipitin Tests; Promoter Regions, Genetic; Tumor Cells, Cultured

2003
High conservation of the Set1/Rad6 axis of histone 3 lysine 4 methylation in budding and fission yeasts.
    The Journal of biological chemistry, 2003, Mar-07, Volume: 278, Issue:10

    Topics: DNA-Binding Proteins; Histone-Lysine N-Methyltransferase; Histones; Ligases; Lysine; Mass Spectrometry; Methylation; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins; Schizosaccharomyces; Transcription Factors; Ubiquitin-Conjugating Enzymes

2003
Crosstalk between CARM1 methylation and CBP acetylation on histone H3.
    Current biology : CB, 2002, Dec-23, Volume: 12, Issue:24

    Topics: Acetylation; Acetyltransferases; Amino Acid Sequence; Arginine; Cells, Cultured; Chromatin; CREB-Binding Protein; Estrogens; Histones; Humans; Lysine; Methylation; Molecular Sequence Data; Nuclear Proteins; Promoter Regions, Genetic; Protein-Arginine N-Methyltransferases; Recombinant Proteins; Trans-Activators; Transcription, Genetic

2002
Gene-specific targeting of H3K9 methylation is sufficient for initiating repression in vivo.
    Current biology : CB, 2002, Dec-23, Volume: 12, Issue:24

    Topics: Cells, Cultured; Endothelial Growth Factors; Gene Expression Regulation; Histone Deacetylases; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation; Methyltransferases; Promoter Regions, Genetic; Protein Structure, Tertiary; Recombinant Proteins; Repressor Proteins; Transcription Factors; Vascular Endothelial Growth Factor A; Zinc Fingers

2002
Mechanism of histone lysine methyl transfer revealed by the structure of SET7/9-AdoMet.
    The EMBO journal, 2003, Jan-15, Volume: 22, Issue:2

    Topics: Amino Acid Sequence; Animals; Binding Sites; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation; Methyltransferases; Models, Molecular; Molecular Sequence Data; Molecular Structure; Mutagenesis, Site-Directed; Protein Conformation; Protein Methyltransferases; Repressor Proteins; S-Adenosylmethionine; Sequence Alignment

2003
Bre1, an E3 ubiquitin ligase required for recruitment and substrate selection of Rad6 at a promoter.
    Molecular cell, 2003, Volume: 11, Issue:1

    Topics: Amino Acid Sequence; Gene Silencing; Histones; Ligases; Lysine; Methylation; Molecular Sequence Data; Open Reading Frames; Promoter Regions, Genetic; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins; Sequence Alignment; Telomere; Ubiquitin; Ubiquitin-Conjugating Enzymes; Ubiquitin-Protein Ligases

2003
A dimeric viral SET domain methyltransferase specific to Lys27 of histone H3.
    Nature structural biology, 2003, Volume: 10, Issue:3

    Topics: Amino Acid Sequence; Animals; Binding Sites; Dimerization; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Histones; Lysine; Methylation; Methyltransferases; Models, Molecular; Molecular Sequence Data; Mutagenesis; Paramecium; Phycodnaviridae; Protein Conformation; Protein Methyltransferases; Protein Structure, Tertiary; S-Adenosylmethionine; Sequence Homology, Amino Acid; Structural Homology, Protein; Substrate Specificity; Viral Proteins

2003
Lysine-79 of histone H3 is hypomethylated at silenced loci in yeast and mammalian cells: a potential mechanism for position-effect variegation.
    Proceedings of the National Academy of Sciences of the United States of America, 2003, Feb-18, Volume: 100, Issue:4

    Topics: Acetylation; Animals; Chromatin; DNA, Ribosomal; Gene Silencing; Histones; Lysine; Methylation; Mice; Saccharomyces cerevisiae; Transcription, Genetic

2003
Balance between acetylation and methylation of histone H3 lysine 9 on the E2F-responsive dihydrofolate reductase promoter.
    Molecular and cellular biology, 2003, Volume: 23, Issue:5

    Topics: 3T3 Cells; Animals; Blood Proteins; Blotting, Western; Cell Cycle; Cell Cycle Proteins; Cell Line; Chromatin; DNA-Binding Proteins; E2F Transcription Factors; G1 Phase; Glutathione Transferase; Histones; Humans; Lysine; Methylation; Mice; Nuclear Proteins; Plasmids; Precipitin Tests; Promoter Regions, Genetic; Protein Binding; Protein Isoforms; Protein Structure, Tertiary; Proteins; Recombinant Fusion Proteins; Resting Phase, Cell Cycle; Retinoblastoma-Like Protein p107; Retinoblastoma-Like Protein p130; Reverse Transcriptase Polymerase Chain Reaction; Tetrahydrofolate Dehydrogenase; Time Factors; Transcription Factors; Transcription, Genetic; Transfection

2003
Cascade of distinct histone modifications during collagenase gene activation.
    Molecular and cellular biology, 2003, Volume: 23, Issue:5

    Topics: Acetyltransferases; Blotting, Western; Chromatin; Collagenases; DNA; DNA Helicases; Enzyme Activation; Histone Acetyltransferases; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation; Methyltransferases; Models, Biological; Models, Genetic; Nuclear Proteins; Phosphorylation; Precipitin Tests; Promoter Regions, Genetic; Protein Binding; Protein Methyltransferases; Proto-Oncogene Proteins c-fos; Proto-Oncogene Proteins c-jun; Reverse Transcriptase Polymerase Chain Reaction; Ribosomal Protein S6 Kinases, 90-kDa; RNA Polymerase II; RNA, Messenger; Saccharomyces cerevisiae Proteins; Time Factors; Trans-Activators; Transcription Factors; Transcription, Genetic; Transcriptional Activation; Transfection; Tumor Cells, Cultured

2003
Epsilon -N,N,N-trimethyllysine-specific ions in matrix-assisted laser desorption/ionization-tandem mass spectrometry.
    Rapid communications in mass spectrometry : RCM, 2003, Volume: 17, Issue:5

    Topics: Acetylation; Amino Acid Sequence; Animals; Erythrocytes; Histones; Lysine; Methylation; Molecular Sequence Data; Protein Processing, Post-Translational; Spectrometry, Mass, Electrospray Ionization; Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization

2003
Dynamic regulation of histone H3 methylated at lysine 79 within a tissue-specific chromatin domain.
    The Journal of biological chemistry, 2003, May-16, Volume: 278, Issue:20

    Topics: Animals; Blotting, Western; Cell Differentiation; Cells, Cultured; Chromatin; Gene Silencing; Genetic Complementation Test; Globins; Histones; Lysine; Methylation; Mice; Models, Genetic; Precipitin Tests; Protein Structure, Tertiary; Reverse Transcriptase Polymerase Chain Reaction; Saccharomyces cerevisiae; Transcription, Genetic

2003
Role of histone H3 lysine 27 methylation in X inactivation.
    Science (New York, N.Y.), 2003, Apr-04, Volume: 300, Issue:5616

    Topics: Animals; Blastocyst; Cell Differentiation; Cell Nucleus; Cells, Cultured; Dosage Compensation, Genetic; Female; Fluorescent Antibody Technique; Genomic Imprinting; HeLa Cells; Histones; Humans; In Situ Hybridization, Fluorescence; Lysine; Male; Methylation; Mice; Mutation; Polycomb Repressive Complex 2; Repressor Proteins; RNA, Long Noncoding; RNA, Untranslated; Stem Cells; Transgenes; Trophoblasts; X Chromosome

2003
The Paf1 complex is required for histone H3 methylation by COMPASS and Dot1p: linking transcriptional elongation to histone methylation.
    Molecular cell, 2003, Volume: 11, Issue:3

    Topics: Blotting, Western; Chromatin; DNA Methylation; DNA-Binding Proteins; Electrophoresis, Polyacrylamide Gel; Gene Silencing; Genome, Fungal; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Histones; Lysine; Methylation; Methyltransferases; Models, Genetic; Mutation; Nuclear Proteins; Precipitin Tests; Protein Binding; Protein Methyltransferases; Proteome; RNA Polymerase II; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins; Telomere; Transcription Factors; Transcription, Genetic

2003
Trimethylated lysine 9 of histone H3 is a mark for DNA methylation in Neurospora crassa.
    Nature genetics, 2003, Volume: 34, Issue:1

    Topics: DNA Methylation; DNA, Fungal; Fungal Proteins; Genes, Fungal; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Histones; Lysine; Methylation; Methyltransferases; Mutation; Neurospora crassa; Protein Methyltransferases; Protein Processing, Post-Translational

2003
Structure of the O-specific polysaccharide of Providencia rustigianii O14 containing N(epsilon)-[(S)-1-carboxyethyl]-N(alpha)-(D-galacturonoyl)-L-lysine.
    Carbohydrate research, 2003, Apr-22, Volume: 338, Issue:9

    Topics: Carbohydrate Conformation; Carbohydrate Sequence; Lysine; Magnetic Resonance Spectroscopy; Methylation; Molecular Sequence Data; Monosaccharides; O Antigens; Providencia

2003
Deletion and site-specific mutagenesis of nucleolin's carboxy GAR domain.
    Chromosoma, 2003, Volume: 111, Issue:7

    Topics: Amino Acid Motifs; Amino Acid Sequence; Animals; Arginine; ATP-Binding Cassette Transporters; Cell Nucleolus; CHO Cells; Cricetinae; DNA, Complementary; Escherichia coli; Gene Deletion; Green Fluorescent Proteins; HeLa Cells; Humans; Intracellular Signaling Peptides and Proteins; Luminescent Proteins; Lysine; Methylation; Methyltransferases; Molecular Sequence Data; Mutagenesis, Site-Directed; Mutation; Nucleolin; Peptides; Phosphoproteins; Protein Structure, Tertiary; Protein-Arginine N-Methyltransferases; RNA-Binding Proteins; Transfection

2003
Enrichment for histone H3 lysine 9 methylation at Alu repeats in human cells.
    The Journal of biological chemistry, 2003, Jul-25, Volume: 278, Issue:30

    Topics: Alu Elements; Base Sequence; Chromatin; Cloning, Molecular; DNA; DNA, Satellite; Histones; Humans; Lysine; Methylation; Molecular Sequence Data; Precipitin Tests; Recombination, Genetic; Terminal Repeat Sequences

2003
The role of DNA methylation in setting up chromatin structure during development.
    Nature genetics, 2003, Volume: 34, Issue:2

    Topics: Acetylation; Animals; Chromatin; CpG Islands; DNA Methylation; Gene Expression Regulation, Developmental; Globins; Histones; Humans; Lysine; Methylation; Mice; Mice, Transgenic; Models, Genetic; Transfection

2003
Changes in rat liver mitochondria with aging. Lon protease-like reactivity and N(epsilon)-carboxymethyllysine accumulation in the matrix.
    European journal of biochemistry, 2003, Volume: 270, Issue:10

    Topics: Adenosine Triphosphate; Aging; Animals; Blotting, Western; Cell Survival; Electrophoresis, Polyacrylamide Gel; Endopeptidases; Enzyme-Linked Immunosorbent Assay; Immunochemistry; Lysine; Male; Methylation; Microscopy, Electron; Mitochondria; Mitochondria, Liver; Oxygen; Oxygen Consumption; Peptides; Rats; Rats, Wistar; Stress, Physiological; Time Factors

2003
Methylation of histone H3 by Set2 in Saccharomyces cerevisiae is linked to transcriptional elongation by RNA polymerase II.
    Molecular and cellular biology, 2003, Volume: 23, Issue:12

    Topics: beta-Galactosidase; Chromatin; Gene Deletion; Histones; Immunoglobulin G; Lysine; Methylation; Methyltransferases; Models, Biological; Models, Genetic; Precipitin Tests; Protein Binding; Protein Structure, Tertiary; RNA Polymerase II; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins; Transcription, Genetic; Uracil

2003
HP1 binding to native chromatin in vitro is determined by the hinge region and not by the chromodomain.
    The EMBO journal, 2003, Jun-16, Volume: 22, Issue:12

    Topics: Amino Acid Sequence; Animals; Chickens; Chromatin; Chromobox Protein Homolog 5; Chromosomal Proteins, Non-Histone; Histones; Humans; Lysine; Methylation; Molecular Sequence Data; Nucleosomes; Protein Binding; Protein Isoforms; Protein Structure, Tertiary; Recombinant Fusion Proteins; Sequence Alignment; Xenopus laevis; Xenopus Proteins

2003
Mechanism of multiple lysine methylation by the SET domain enzyme Rubisco LSMT.
    Nature structural biology, 2003, Volume: 10, Issue:7

    Topics: Amino Acid Sequence; Catalysis; Crystallization; Lysine; Methylation; Models, Molecular; Molecular Sequence Data; Protein Conformation; Ribulose-Bisphosphate Carboxylase; Sequence Homology, Amino Acid; Substrate Specificity

2003
Saccharomyces cerevisiae Set1p is a methyltransferase specific for lysine 4 of histone H3 and is required for efficient gene expression.
    Yeast (Chichester, England), 2003, Jul-15, Volume: 20, Issue:9

    Topics: Amino Acid Sequence; Cluster Analysis; DNA-Binding Proteins; Gene Expression Regulation, Enzymologic; Gene Expression Regulation, Fungal; Histone-Lysine N-Methyltransferase; Histones; Lysine; Methylation; Methyltransferases; Molecular Sequence Data; Oligonucleotide Array Sequence Analysis; RNA, Fungal; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins; Sequence Homology, Amino Acid; Substrate Specificity; Transcription Factors; Transcription, Genetic

2003
Sir2 regulates histone H3 lysine 9 methylation and heterochromatin assembly in fission yeast.
    Current biology : CB, 2003, Jul-15, Volume: 13, Issue:14

    Topics: Acetylation; Chromosomal Proteins, Non-Histone; Chromosome Mapping; Gene Silencing; Heterochromatin; Histones; Lysine; Methylation; Methyltransferases; Polymerase Chain Reaction; Precipitin Tests; Schizosaccharomyces; Schizosaccharomyces pombe Proteins; Sirtuins; Staining and Labeling

2003
Reactivation of the silenced and imprinted alleles of ARHI is associated with increased histone H3 acetylation and decreased histone H3 lysine 9 methylation.
    Human molecular genetics, 2003, Aug-01, Volume: 12, Issue:15

    Topics: Acetylation; Alleles; Cell Line, Tumor; Chromatin; DNA-Cytosine Methylases; Gene Components; Gene Expression Regulation; Histones; Humans; Lysine; Methylation; Precipitin Tests; Reverse Transcriptase Polymerase Chain Reaction; rho GTP-Binding Proteins; RNA

2003
The Rtf1 component of the Paf1 transcriptional elongation complex is required for ubiquitination of histone H2B.
    The Journal of biological chemistry, 2003, Sep-05, Volume: 278, Issue:36

    Topics: Blotting, Western; Chromatin; Dimerization; Dithiothreitol; Gene Deletion; Gene Silencing; Histones; Lysine; Methylation; Nuclear Proteins; Plasmids; Precipitin Tests; RNA, Messenger; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins; TATA-Box Binding Protein; Telomere; Transcription Factors; Transcription, Genetic; Ubiquitin

2003
The Paf1 complex is essential for histone monoubiquitination by the Rad6-Bre1 complex, which signals for histone methylation by COMPASS and Dot1p.
    The Journal of biological chemistry, 2003, Sep-12, Volume: 278, Issue:37

    Topics: DNA Polymerase II; Histone-Lysine N-Methyltransferase; Histones; Ligases; Lysine; Methylation; Nuclear Proteins; RNA Polymerase II; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins; Ubiquitin; Ubiquitin-Conjugating Enzymes

2003
Structural basis for specific binding of Polycomb chromodomain to histone H3 methylated at Lys 27.
    Genes & development, 2003, Aug-01, Volume: 17, Issue:15

    Topics: Amino Acid Sequence; Animals; Chromatin; Crystallography, X-Ray; Drosophila; Drosophila Proteins; Glutathione Transferase; Heterochromatin; Histones; Lysine; Methylation; Models, Molecular; Molecular Sequence Data; Polycomb Repressive Complex 1; Protein Binding; Protein Structure, Tertiary; Recombinant Fusion Proteins; Sequence Homology, Amino Acid

2003
Molecular basis for the discrimination of repressive methyl-lysine marks in histone H3 by Polycomb and HP1 chromodomains.
    Genes & development, 2003, Aug-01, Volume: 17, Issue:15

    Topics: Amino Acid Motifs; Amino Acid Sequence; Animals; Binding Sites; Cell Nucleus; Chromatin; Chromobox Protein Homolog 5; Chromosomal Proteins, Non-Histone; Crystallography, X-Ray; Dose-Response Relationship, Drug; Drosophila melanogaster; Escherichia coli; Histones; Lysine; Methylation; Microscopy, Fluorescence; Models, Molecular; Molecular Sequence Data; Peptides; Protein Binding; Protein Structure, Tertiary; Sequence Homology, Amino Acid; Transfection

2003
Differential patterns of histone methylation and acetylation distinguish active and repressed alleles at X-linked genes.
    Cytogenetic and genome research, 2002, Volume: 99, Issue:1-4

    Topics: Acetylation; Alleles; Animals; Cell Line; DNA Methylation; Dosage Compensation, Genetic; Female; Gene Expression Regulation; Genetic Linkage; Histones; Hypoxanthine Phosphoribosyltransferase; Lysine; Male; Methylation; Mice; Phosphoglycerate Kinase; RNA, Long Noncoding; RNA, Untranslated; Transcription Factors; X Chromosome

2002
E2F6 negatively regulates BRCA1 in human cancer cells without methylation of histone H3 on lysine 9.
    The Journal of biological chemistry, 2003, Oct-24, Volume: 278, Issue:43

    Topics: Binding Sites; BRCA1 Protein; Cell Cycle Proteins; Cell Line, Tumor; Chromatin; Chromobox Protein Homolog 5; CpG Islands; E2F6 Transcription Factor; Gene Expression Regulation, Neoplastic; Histones; Humans; Lysine; Methylation; Oligonucleotide Array Sequence Analysis; Promoter Regions, Genetic; Repressor Proteins; Transcription Factors

2003
Set2-catalyzed methylation of histone H3 represses basal expression of GAL4 in Saccharomyces cerevisiae.
    Molecular and cellular biology, 2003, Volume: 23, Issue:17

    Topics: Amino Acid Sequence; Base Sequence; Catalytic Domain; DNA-Binding Proteins; Gene Expression Regulation, Fungal; Histones; Lysine; Methylation; Methyltransferases; Molecular Sequence Data; Mutation; Protein Structure, Tertiary; Repressor Proteins; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins; Sequence Homology, Amino Acid; Transcription Factors; Transcription, Genetic

2003
Insulation of the chicken beta-globin chromosomal domain from a chromatin-condensing protein, MENT.
    Molecular and cellular biology, 2003, Volume: 23, Issue:18

    Topics: 3T3 Cells; Acetylation; Animals; Avian Proteins; Cell Division; Cells, Cultured; Chickens; Chromatin; Chromosomal Proteins, Non-Histone; Enzyme Inhibitors; Erythrocytes; Globins; Histone Deacetylase Inhibitors; Histones; Lymphocytes; Lysine; Methylation; Mice; Protein Structure, Tertiary

2003
Identification of methylation and acetylation sites on mouse histone H3 using matrix-assisted laser desorption/ionization time-of-flight and nanoelectrospray ionization tandem mass spectrometry.
    Journal of protein chemistry, 2003, Volume: 22, Issue:4

    Topics: Acetylation; Amino Acid Sequence; Animals; Binding Sites; Cell Line; Histones; Lysine; Methylation; Mice; Molecular Sequence Data; Nanotechnology; Protein Processing, Post-Translational; Spectrometry, Mass, Electrospray Ionization; Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization

2003
ASH1, a Drosophila trithorax group protein, is required for methylation of lysine 4 residues on histone H3.
    Proceedings of the National Academy of Sciences of the United States of America, 2003, Sep-30, Volume: 100, Issue:20

    Topics: Animals; DNA-Binding Proteins; Drosophila; Drosophila Proteins; Fluorescent Antibody Technique; Histones; Lysine; Methylation; Mutation; Transcription Factors

2003
ACETYLATION AND METHYLATION OF HISTONES AND THEIR POSSIBLE ROLE IN THE REGULATION OF RNA SYNTHESIS.
    Proceedings of the National Academy of Sciences of the United States of America, 1964, Volume: 51

    Topics: Acetates; Acetylation; Amino Acids; Anti-Bacterial Agents; Arginine; Azotobacter; Carbon Isotopes; Cell Nucleus; Chromatography; Chromosomes; DNA; DNA, Bacterial; Escherichia coli; Histones; Ligases; Lysine; Metabolism; Methionine; Methylation; Methylcellulose; Proteins; Puromycin; Research; Ribosomes; RNA; RNA, Bacterial; RNA, Messenger

1964
INVESTIGATION OF THE ACTIVE SITES OF LYSOZYME. CARBOXYMETHYLATION OF THE IMIDAZOLE GROUP OF HISTIDINE AND OF THE EPSILON-AMINOGROUP OF LYSINE.
    Biochimica et biophysica acta, 1964, Nov-22, Volume: 92

    Topics: Alkylation; Catalytic Domain; Chromatography; Histidine; Imidazoles; Lysine; Methylation; Muramidase; Research; Spectrophotometry

1964
Antigen receptor loci poised for V(D)J rearrangement are broadly associated with BRG1 and flanked by peaks of histone H3 dimethylated at lysine 4.
    Proceedings of the National Academy of Sciences of the United States of America, 2003, Sep-30, Volume: 100, Issue:20

    Topics: Animals; DNA Helicases; Histones; Lysine; Methylation; Mice; Nuclear Proteins; Phosphorylation; Polymerase Chain Reaction; Receptors, Antigen, T-Cell; Transcription Factors; Tumor Cells, Cultured; VDJ Recombinases

2003
Differential transcription factor occupancy but evolutionarily conserved chromatin features at the human and mouse M-CSF (CSF-1) receptor loci.
    Nucleic acids research, 2003, Oct-15, Volume: 31, Issue:20

    Topics: 3T3 Cells; Acetylation; Animals; Base Sequence; Binding Sites; Cell Line; Cell Line, Tumor; Chromatin; Conserved Sequence; Enhancer Elements, Genetic; Evolution, Molecular; HeLa Cells; Histones; HL-60 Cells; Humans; Introns; Lysine; Macrophages; Methylation; Mice; Molecular Sequence Data; Protein Binding; Receptor, Macrophage Colony-Stimulating Factor; Regulatory Sequences, Nucleic Acid; TATA-Box Binding Protein; Transcription Factors

2003
mAM facilitates conversion by ESET of dimethyl to trimethyl lysine 9 of histone H3 to cause transcriptional repression.
    Molecular cell, 2003, Volume: 12, Issue:2

    Topics: Amino Acid Sequence; Animals; Binding Sites; Blotting, Western; Cell Line; Chromatin; Dose-Response Relationship, Drug; Electrophoresis, Polyacrylamide Gel; Enzymes; HeLa Cells; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Histones; Humans; Kinetics; Lysine; Methylation; Methyltransferases; Mice; Molecular Sequence Data; Precipitin Tests; Promoter Regions, Genetic; Protein Binding; Protein Methyltransferases; Recombinant Proteins; Repressor Proteins; RNA Interference; Silver Staining; Substrate Specificity; Time Factors; Transcription Factors; Transcription, Genetic

2003
Promoter-restricted H3 Lys 4 di-methylation is an epigenetic mark for monoallelic expression.
    Human molecular genetics, 2003, Dec-15, Volume: 12, Issue:24

    Topics: Alleles; Animals; Cells, Cultured; Chromatin; Epigenesis, Genetic; Exons; Female; Gene Expression; Histones; Lysine; Methylation; Mice; Models, Biological; Promoter Regions, Genetic

2003
Methylation at lysine 4 of histone H3 in ecdysone-dependent development of Drosophila.
    Nature, 2003, Nov-06, Volume: 426, Issue:6962

    Topics: Animals; Chromatin Assembly and Disassembly; Drosophila; Drosophila Proteins; Ecdysone; Eye; Female; Gene Expression Regulation, Developmental; Hedgehog Proteins; Histone-Lysine N-Methyltransferase; Histones; Lysine; Male; Methylation; Promoter Regions, Genetic; Protein Binding; Receptors, Steroid

2003
Dynamic methylation of histone H3 at lysine 4 in transcriptional regulation by the androgen receptor.
    Nucleic acids research, 2003, Dec-01, Volume: 31, Issue:23

    Topics: Androgen Receptor Antagonists; Anilides; Cell Line, Tumor; Enhancer Elements, Genetic; Exons; Histones; Humans; Kinetics; Lysine; Male; Methylation; Nitriles; Promoter Regions, Genetic; Prostate-Specific Antigen; Receptors, Androgen; RNA, Messenger; Tosyl Compounds; Transcription, Genetic; Transcriptional Activation

2003
Methylation of histone H3 K4 mediates association of the Isw1p ATPase with chromatin.
    Molecular cell, 2003, Volume: 12, Issue:5

    Topics: Adenosine Triphosphatases; Chromatin; Chromosomal Proteins, Non-Histone; DNA-Binding Proteins; Gene Expression Regulation, Fungal; Histones; Humans; Lysine; Methionine; Methylation; mRNA Cleavage and Polyadenylation Factors; Protein Binding; RNA Polymerase II; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins

2003
The N-terminal SH4 region of the Src family kinase Fyn is modified by methylation and heterogeneous fatty acylation: role in membrane targeting, cell adhesion, and spreading.
    The Journal of biological chemistry, 2004, Feb-27, Volume: 279, Issue:9

    Topics: Acylation; Acyltransferases; Amino Acid Sequence; Animals; Cell Adhesion; Cell Fractionation; Cell Membrane; Chlorocebus aethiops; Consensus Sequence; COS Cells; Fatty Acids; Green Fluorescent Proteins; Luminescent Proteins; Lysine; Methylation; Myristic Acid; Palmitic Acid; Peptide Fragments; Proto-Oncogene Proteins; Proto-Oncogene Proteins c-fyn; Recombinant Fusion Proteins; Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization; Structure-Activity Relationship

2004
Thermal stability and aggregation of sulfolobus solfataricus beta-glycosidase are dependent upon the N-epsilon-methylation of specific lysyl residues: critical role of in vivo post-translational modifications.
    The Journal of biological chemistry, 2004, Mar-12, Volume: 279, Issue:11

    Topics: Amino Acids; Coloring Agents; Detergents; Dimerization; Electrophoresis, Polyacrylamide Gel; Escherichia coli; Glucosidases; Hydrogen Bonding; Hydrogen-Ion Concentration; Hydrolysis; Lysine; Mass Spectrometry; Methylation; Models, Chemical; Models, Molecular; Oxazines; Protein Binding; Protein Conformation; Protein Denaturation; Protein Processing, Post-Translational; Protein Structure, Secondary; Recombinant Proteins; Software; Spectrometry, Fluorescence; Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization; Spectrophotometry, Infrared; Spectroscopy, Fourier Transform Infrared; Sulfolobus; Temperature

2004
Histone H3 lysine 4 methylation patterns in higher eukaryotic genes.
    Nature cell biology, 2004, Volume: 6, Issue:1

    Topics: Animals; Chickens; Chromosome Mapping; Eukaryotic Cells; Gene Expression Regulation; Genes; Genome; Globins; Histones; Lysine; Methylation; Saccharomyces cerevisiae; Transcriptional Activation

2004
Silencing of transgene transcription precedes methylation of promoter DNA and histone H3 lysine 9.
    The EMBO journal, 2004, Jan-14, Volume: 23, Issue:1

    Topics: Acetylation; Alpharetrovirus; Animals; Azacitidine; Cell Line; Cell Transformation, Viral; Chickens; Chromatin; CpG Islands; DNA Methylation; Erythroid Cells; Flow Cytometry; Gene Dosage; Gene Silencing; Genes, Reporter; Histones; Kinetics; Lysine; Methylation; Models, Genetic; Polymerase Chain Reaction; Precipitin Tests; Promoter Regions, Genetic; Reverse Transcriptase Polymerase Chain Reaction; RNA, Messenger; Sequence Analysis, DNA; Transcription, Genetic; Transgenes

2004
Partitioning and plasticity of repressive histone methylation states in mammalian chromatin.
    Molecular cell, 2003, Volume: 12, Issue:6

    Topics: Amino Acid Sequence; Animals; Cell Line; Chromatin; Genome; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Histones; Lysine; Mass Spectrometry; Methylation; Methyltransferases; Mice; Molecular Sequence Data; Protein Methyltransferases; Repressor Proteins

2003
Histone methyltransferases direct different degrees of methylation to define distinct chromatin domains.
    Molecular cell, 2003, Volume: 12, Issue:6

    Topics: Animals; Cells, Cultured; Chromatin; Fibroblasts; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation; Methyltransferases; Mice; Protein Methyltransferases; Repressor Proteins; Transcription, Genetic

2003
Two distinct methods analyzing chromatin structure using centrifugation and antibodies to modified histone H3: both provide similar chromatin states of the Rit1/Bcl11b gene.
    Biochemical and biophysical research communications, 2004, Jan-16, Volume: 313, Issue:3

    Topics: Animals; Antibodies; Blotting, Northern; Blotting, Western; Cell Division; Cell Line, Tumor; Centrifugation; Chromatin; DNA; Histones; Liver; Lysine; Methylation; Mice; Models, Genetic; Polymerase Chain Reaction; Precipitin Tests; ras Proteins; Thymus Gland; Tissue Distribution

2004
Allylation and propargylation of chiral cyanopropanoates: an efficient route to long chain alpha-substituted alpha-methyl alpha-amino acids.
    Chirality, 2004, Volume: 16, Issue:2

    Topics: Cyanates; Fatty Acids; Lysine; Methylation; Molecular Structure; Stereoisomerism

2004
Differentiation between peptides containing acetylated or tri-methylated lysines by mass spectrometry: an application for determining lysine 9 acetylation and methylation of histone H3.
    Proteomics, 2004, Volume: 4, Issue:1

    Topics: Acetylation; Histones; Lysine; Methylation; Peptides; Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization

2004
Histone H3 lysine 9 methylation is required for DNA elimination in developing macronuclei in Tetrahymena.
    Proceedings of the National Academy of Sciences of the United States of America, 2004, Feb-10, Volume: 101, Issue:6

    Topics: Animals; Fluorescent Antibody Technique, Indirect; Histones; Lysine; Methylation; Nuclear Proteins; Phosphoproteins; Protozoan Proteins; RNA, Protozoan; Tetrahymena thermophila

2004
FGF2-induced chromatin remodeling regulates CNTF-mediated gene expression and astrocyte differentiation.
    Nature neuroscience, 2004, Volume: 7, Issue:3

    Topics: Animals; Astrocytes; Cell Differentiation; Cells, Cultured; Cerebral Cortex; Chromatin Assembly and Disassembly; Ciliary Neurotrophic Factor; DNA-Binding Proteins; Fetus; Fibroblast Growth Factor 2; Gene Expression Regulation, Developmental; Glial Fibrillary Acidic Protein; Histones; Lysine; Methylation; Promoter Regions, Genetic; Rats; Signal Transduction; STAT1 Transcription Factor; Stem Cells; Trans-Activators; Transcription Factors

2004
Structure of the scorpion toxin BmBKTtx1 solved from single wavelength anomalous scattering of sulfur.
    Journal of structural biology, 2004, Volume: 145, Issue:3

    Topics: Amino Acid Sequence; Amino Acids; Animals; Crystallography, X-Ray; Cysteine; Disulfides; Electrons; Insect Proteins; Lysine; Methylation; Models, Molecular; Molecular Sequence Data; Neurotoxins; Potassium Channels; Protein Conformation; Protein Folding; Scattering, Radiation; Scorpion Venoms; Scorpions; Static Electricity; Sulfur; X-Rays

2004
The ionic track in the F1-ATPase from the thermophilic Bacillus PS3.
    Biochemistry, 2004, Mar-09, Volume: 43, Issue:9

    Topics: Adenosine Diphosphate; Amino Acid Substitution; Arginine; Bacillus; Bacterial Proton-Translocating ATPases; Catalytic Domain; Copper; Cysteine; Enzyme Activation; Enzyme Inhibitors; Glutamic Acid; Lysine; Methylation; Mutagenesis, Site-Directed; Protein Subunits; Sodium-Potassium-Exchanging ATPase; Temperature

2004
The essential WD repeat protein Swd2 has dual functions in RNA polymerase II transcription termination and lysine 4 methylation of histone H3.
    Molecular and cellular biology, 2004, Volume: 24, Issue:7

    Topics: Histone-Lysine N-Methyltransferase; Histones; Lysine; Methylation; Phenotype; RNA Polymerase II; RNA-Binding Proteins; RNA, Messenger; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins; Temperature; Transcription, Genetic

2004
The N-terminus of Drosophila SU(VAR)3-9 mediates dimerization and regulates its methyltransferase activity.
    Biochemistry, 2004, Mar-30, Volume: 43, Issue:12

    Topics: Amino Acid Sequence; Animals; Catalysis; Dimerization; Drosophila melanogaster; Drosophila Proteins; Enzyme Activation; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Histones; Isoenzymes; Kinetics; Lysine; Methylation; Methyltransferases; Molecular Sequence Data; Peptide Fragments; Protein Binding; Protein Methyltransferases; Protein Processing, Post-Translational; Recombinant Proteins; Sequence Deletion

2004
Histone 3 lysine 4 methylation during the pre-B to immature B-cell transition.
    Nucleic acids research, 2004, Volume: 32, Issue:6

    Topics: Animals; B-Lymphocytes; Cell Line, Transformed; Cell Lineage; Cells, Cultured; Gene Rearrangement, B-Lymphocyte; Histones; Immunoglobulin kappa-Chains; Lysine; Methylation; Stem Cells

2004
Small molecule regulators of protein arginine methyltransferases.
    The Journal of biological chemistry, 2004, Jun-04, Volume: 279, Issue:23

    Topics: Arginine; Binding Sites; Cell Line, Tumor; Cell Nucleus; DNA Methylation; Enzyme-Linked Immunosorbent Assay; Epitopes; Genes, Reporter; Glutathione Transferase; Green Fluorescent Proteins; Humans; Inhibitory Concentration 50; Light; Luciferases; Luminescent Proteins; Lysine; Methylation; Models, Chemical; Nitrogen; Plasmids; Protein Processing, Post-Translational; Protein Structure, Tertiary; Protein Transport; Protein-Arginine N-Methyltransferases; S-Adenosylmethionine; Signal Transduction; Transcription, Genetic; Transcriptional Activation; Transfection; Ultraviolet Rays

2004
Gene-specific modulation of TAF10 function by SET9-mediated methylation.
    Molecular cell, 2004, Apr-23, Volume: 14, Issue:2

    Topics: Amino Acid Sequence; Antibodies, Monoclonal; Baculoviridae; Binding Sites; Cell Line; Cell Nucleus; Escherichia coli; Gene Expression Regulation; Genes, Reporter; Genetic Vectors; HeLa Cells; Histones; Humans; Lysine; Methylation; Methyltransferases; Mutation; Nucleosomes; Precipitin Tests; Protein Structure, Tertiary; Proteins; Recombinant Fusion Proteins; RNA Polymerase II; Substrate Specificity; TATA-Binding Protein Associated Factors; Time Factors; Transcription Factor TFIID; Transcription, Genetic; Transcriptional Activation

2004
Regulation of histone H3 lysine 9 methylation in oocytes and early pre-implantation embryos.
    Development (Cambridge, England), 2004, Volume: 131, Issue:10

    Topics: Animals; Blastula; Body Patterning; Female; Fertilization; Fertilization in Vitro; Genome; Histones; Homeostasis; Lysine; Male; Methylation; Mice; Mice, Inbred Strains; Oocytes; Parthenogenesis; Sex Characteristics; Zygote Intrafallopian Transfer

2004
Tethering of HP1 proteins to chromatin is relieved by phosphoacetylation of histone H3.
    EMBO reports, 2004, Volume: 5, Issue:5

    Topics: Acetylation; Animals; Chromatin; Chromobox Protein Homolog 5; Chromosomal Proteins, Non-Histone; G2 Phase; Gene Expression Regulation; Histones; Lysine; Macromolecular Substances; Methylation; Mice; Mitosis; NIH 3T3 Cells; Peptides; Phosphorylation; Protein Binding; Recombinant Fusion Proteins; Serine; Surface Plasmon Resonance

2004
Heterochromatin and tri-methylated lysine 20 of histone H4 in animals.
    Journal of cell science, 2004, May-15, Volume: 117, Issue:Pt 12

    Topics: Animals; Cell Line; Cell Nucleus; Cells, Cultured; Centromere; Chromosomes; Culture Media, Serum-Free; DNA; Drosophila; Embryo, Mammalian; Embryo, Nonmammalian; Female; Fibroblasts; Fluorescent Antibody Technique, Indirect; Genetic Markers; Hemiptera; Heterochromatin; Histones; Lysine; Male; Methylation; Mice; Microscopy, Fluorescence; Oocytes; S Phase; Spermatozoa; Telomere

2004
Genetically encoded fluorescent reporters of histone methylation in living cells.
    Journal of the American Chemical Society, 2004, May-19, Volume: 126, Issue:19

    Topics: Animals; Cells; Escherichia coli; Fluorescent Dyes; Genes, Reporter; Histones; Lysine; Methylation; Molecular Sequence Data; Mutagenesis, Site-Directed; Paramecium; Protein Processing, Post-Translational

2004
Three dimensional analysis of histone methylation patterns in normal and tumor cell nuclei.
    European journal of histochemistry : EJH, 2004, Volume: 48, Issue:1

    Topics: Cell Line, Tumor; Cell Nucleus; Centromere; DNA; Female; Fibroblasts; Heterochromatin; Histones; Humans; Lysine; Methylation; Monocytes; Neoplasms; T-Lymphocytes

2004
A silencing pathway to induce H3-K9 and H4-K20 trimethylation at constitutive heterochromatin.
    Genes & development, 2004, Jun-01, Volume: 18, Issue:11

    Topics: Amino Acid Sequence; Animals; Cells, Cultured; Chromobox Protein Homolog 5; Chromosomal Proteins, Non-Histone; Conserved Sequence; Drosophila; Drosophila Proteins; Female; Fibroblasts; Gene Silencing; Genes, Suppressor; Heterochromatin; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Histones; Lysine; Mammals; Methylation; Methyltransferases; Mice; Molecular Sequence Data; Protein Methyltransferases; Protein Structure, Tertiary; Repressor Proteins; Substrate Specificity

2004
Functions for S. cerevisiae Swd2p in 3' end formation of specific mRNAs and snoRNAs and global histone 3 lysine 4 methylation.
    RNA (New York, N.Y.), 2004, Volume: 10, Issue:6

    Topics: Amino Acid Sequence; Base Sequence; DNA-Binding Proteins; DNA, Fungal; Histone-Lysine N-Methyltransferase; Histones; Lysine; Macromolecular Substances; Methylation; Molecular Sequence Data; mRNA Cleavage and Polyadenylation Factors; Multiprotein Complexes; Repetitive Sequences, Amino Acid; RNA, Fungal; RNA, Messenger; RNA, Small Nucleolar; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins; Sequence Homology, Amino Acid; Transcription Factors

2004
K8 and K12 are biotinylated in human histone H4.
    European journal of biochemistry, 2004, Volume: 271, Issue:11

    Topics: Acetylation; Amino Acid Substitution; Antibodies; Biotinylation; Chromatography, High Pressure Liquid; Histones; Humans; Jurkat Cells; Lysine; Mass Spectrometry; Methylation; Peptides

2004
A possible involvement of the carboxymethylation process in carpal tunnel syndrome in hemodialysis patients.
    Therapeutic apheresis and dialysis : official peer-reviewed journal of the International Society for Apheresis, the Japanese Society for Apheresis, the Japanese Society for Dialysis Therapy, 2004, Volume: 8, Issue:3

    Topics: Adult; Age of Onset; Aged; Carpal Tunnel Syndrome; Electrophysiology; Female; Hemoglobins; Humans; Lysine; Male; Methylation; Middle Aged; Multivariate Analysis; Neural Conduction; Regression Analysis; Renal Dialysis; Time Factors

2004
Differential histone H3 Lys-9 and Lys-27 methylation profiles on the X chromosome.
    Molecular and cellular biology, 2004, Volume: 24, Issue:12

    Topics: Animals; Cells, Cultured; Dosage Compensation, Genetic; Female; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Histones; Kinetics; Lysine; Male; Methylation; Mice; Mutation; Protein Methyltransferases; RNA, Long Noncoding; RNA, Untranslated; X Chromosome

2004
Effectors of lysine 4 methylation of histone H3 in Saccharomyces cerevisiae are negative regulators of PHO5 and GAL1-10.
    The Journal of biological chemistry, 2004, Aug-06, Volume: 279, Issue:32

    Topics: Acid Phosphatase; Carrier Proteins; DNA-Binding Proteins; Feedback, Physiological; Gene Deletion; Gene Expression Regulation; Histone-Lysine N-Methyltransferase; Histones; Lysine; Methylation; Mutagenesis; Nuclear Proteins; Polymerase Chain Reaction; Proton-Phosphate Symporters; RNA, Messenger; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins; TATA-Box Binding Protein; Transcription Factors; Transcription, Genetic; Ubiquitin; Ubiquitin-Conjugating Enzymes

2004
A switch in mitotic histone H4 lysine 20 methylation status is linked to M phase defects upon loss of HCF-1.
    Molecular cell, 2004, Jun-18, Volume: 14, Issue:6

    Topics: Cell Division; Cell Line, Tumor; Chromatin; Cytokinesis; HeLa Cells; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Histones; Host Cell Factor C1; Humans; Lysine; Methylation; Mitosis; Protein Methyltransferases; RNA, Messenger; RNA, Small Interfering; Transcription Factors; Up-Regulation

2004
Human DNA methyltransferase 1 is required for maintenance of the histone H3 modification pattern.
    The Journal of biological chemistry, 2004, Aug-27, Volume: 279, Issue:35

    Topics: Animals; Base Sequence; Cell Line, Tumor; Cell Nucleus; Chromatin; Chromobox Protein Homolog 5; Chromosomal Proteins, Non-Histone; DNA (Cytosine-5-)-Methyltransferase 1; DNA (Cytosine-5-)-Methyltransferases; DNA Methylation; Electrophoresis, Capillary; Heterochromatin; Histone Deacetylases; Histones; Humans; Lysine; Methylation; Mice; Micrococcal Nuclease; Microscopy, Electron; Microscopy, Fluorescence; Molecular Sequence Data; Phenotype; Precipitin Tests; Protein Binding

2004
SUZ12 is required for both the histone methyltransferase activity and the silencing function of the EED-EZH2 complex.
    Molecular cell, 2004, Jul-02, Volume: 15, Issue:1

    Topics: Binding Sites; Cell Division; DNA-Binding Proteins; Enhancer of Zeste Homolog 2 Protein; Gene Expression Regulation, Developmental; Gene Silencing; Gene Targeting; Genes, Homeobox; HeLa Cells; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Histones; Homeodomain Proteins; Humans; Lysine; Methylation; Mutation; Neoplasm Proteins; Polycomb Repressive Complex 2; Protein Methyltransferases; Proteins; Repressor Proteins; Silencer Elements, Transcriptional; Transcription Factors; Up-Regulation

2004
Silencing of human polycomb target genes is associated with methylation of histone H3 Lys 27.
    Genes & development, 2004, Jul-01, Volume: 18, Issue:13

    Topics: Carrier Proteins; Colonic Neoplasms; CpG Islands; DNA-Binding Proteins; Enhancer of Zeste Homolog 2 Protein; Gene Expression Regulation; Gene Silencing; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Macromolecular Substances; Methylation; Neoplasm Proteins; Nuclear Proteins; Oligonucleotide Array Sequence Analysis; Polycomb Repressive Complex 2; Polycomb-Group Proteins; Promoter Regions, Genetic; Proteins; Repressor Proteins; Transcription Factors

2004
A chromosomal memory triggered by Xist regulates histone methylation in X inactivation.
    PLoS biology, 2004, Volume: 2, Issue:7

    Topics: Animals; Blotting, Western; Cell Differentiation; Chromatin; Chromatin Immunoprecipitation; DNA; DNA Methylation; Dosage Compensation, Genetic; Embryo, Mammalian; Gene Silencing; Histones; In Situ Hybridization, Fluorescence; Kinetics; Lysine; Methylation; Mice; Microscopy, Fluorescence; Models, Biological; Models, Genetic; Mutation; RNA; RNA, Long Noncoding; RNA, Untranslated; Stem Cells; X Chromosome; X Chromosome Inactivation

2004
B cell-specific loss of histone 3 lysine 9 methylation in the V(H) locus depends on Pax5.
    Nature immunology, 2004, Volume: 5, Issue:8

    Topics: Animals; B-Lymphocytes; Base Sequence; Cell Lineage; Cells, Cultured; DNA-Binding Proteins; Flow Cytometry; Gene Rearrangement, B-Lymphocyte; Hematopoietic Stem Cells; Histones; Immunoglobulin Heavy Chains; Immunoglobulin Variable Region; Lysine; Methylation; Mice; Models, Immunological; Molecular Sequence Data; PAX5 Transcription Factor; Precipitin Tests; Reverse Transcriptase Polymerase Chain Reaction; Transcription Factors

2004
RNAi-dependent and RNAi-independent mechanisms contribute to the silencing of RIPed sequences in Neurospora crassa.
    Nucleic acids research, 2004, Volume: 32, Issue:14

    Topics: DNA Transposable Elements; DNA, Fungal; Gene Expression Regulation, Fungal; Gene Silencing; Genome, Fungal; Histones; Lysine; Methylation; Neurospora crassa; Point Mutation; Repetitive Sequences, Nucleic Acid; RNA Interference; RNA, Fungal; RNA, Small Interfering

2004
Dynamic alterations of specific histone modifications during early murine development.
    Journal of cell science, 2004, Sep-01, Volume: 117, Issue:Pt 19

    Topics: Acetylation; Animals; Arginine; Embryo, Mammalian; Female; Fluorescent Antibody Technique, Indirect; Histones; Hydrolases; Lysine; Metaphase; Methylation; Mice; Microscopy, Confocal; Oocytes; Phosphorylation; Protein-Arginine Deiminases; Serine

2004
Methyl-CpG binding protein MBD1 couples histone H3 methylation at lysine 9 by SETDB1 to DNA replication and chromatin assembly.
    Molecular cell, 2004, Aug-27, Volume: 15, Issue:4

    Topics: Apoptosis Regulatory Proteins; Carrier Proteins; Chromatin Assembly and Disassembly; CpG Islands; DNA Replication; DNA-Binding Proteins; Gene Silencing; HeLa Cells; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Macromolecular Substances; Methylation; Models, Biological; Promoter Regions, Genetic; Protein Methyltransferases; Proteins; RNA, Small Interfering; S Phase; Transcription Factors; Two-Hybrid System Techniques

2004
During lytic infection herpes simplex virus type 1 is associated with histones bearing modifications that correlate with active transcription.
    Journal of virology, 2004, Volume: 78, Issue:18

    Topics: Base Sequence; Cell Line; DNA, Viral; Genome, Viral; Herpesvirus 1, Human; Histones; Humans; Lysine; Methylation; Micrococcal Nuclease; Models, Biological; Nucleosomes; Promoter Regions, Genetic; Transcription, Genetic

2004
Characterization of the grappa gene, the Drosophila histone H3 lysine 79 methyltransferase.
    Genetics, 2005, Volume: 169, Issue:1

    Topics: Animals; Drosophila melanogaster; Drosophila Proteins; Embryonic Development; Female; Gene Expression Regulation, Developmental; Gene Silencing; Genes, Dominant; Heterochromatin; Histone-Lysine N-Methyltransferase; Histones; Homeodomain Proteins; Lysine; Male; Methylation; Mutation; Nuclear Proteins; Phenotype; Polycomb Repressive Complex 1; Repressor Proteins; Saccharomyces cerevisiae Proteins; Telomere

2005
A mass spectrometric "Western blot" to evaluate the correlations between histone methylation and histone acetylation.
    Proteomics, 2004, Volume: 4, Issue:12

    Topics: Acetic Acid; Acetylation; Blotting, Western; Chromatin; Chromatography, High Pressure Liquid; Chromatography, Ion Exchange; Chromatography, Liquid; Electrophoresis, Polyacrylamide Gel; HeLa Cells; Histones; Humans; Lysine; Mass Spectrometry; Methylation; Peptides; Phosphorylation; Protein Processing, Post-Translational; Protein Structure, Tertiary; Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization; Transcription, Genetic; Urea

2004
Differential dynamics of histone H3 methylation at positions K4 and K9 in the mouse zygote.
    BMC developmental biology, 2004, Sep-21, Volume: 4

    Topics: Animals; Chromosomal Instability; Chromosomes, Mammalian; Crosses, Genetic; Female; Fertilization in Vitro; Fluorescent Antibody Technique, Indirect; Genome; Histones; Lysine; Male; Methylation; Mice; Mice, Inbred C57BL; Mice, Inbred CBA; Microscopy, Fluorescence; Oocytes; Pregnancy; Spermatozoa; Time Factors; Zygote

2004
Histone H4 hyperacetylation precludes histone H4 lysine 20 trimethylation.
    The Journal of biological chemistry, 2004, Dec-17, Volume: 279, Issue:51

    Topics: Acetamides; Acetylation; Amino Acid Sequence; Animals; Antineoplastic Agents; Blotting, Western; Butyrates; Cell Differentiation; Cell Line, Tumor; Cell Nucleus; Chromatin; Chromatography, High Pressure Liquid; Chromatography, Liquid; Dimethyl Sulfoxide; Enzyme Inhibitors; Heterochromatin; Histones; Hydroxamic Acids; Leukemia, Erythroblastic, Acute; Lysine; Mass Spectrometry; Metalloendopeptidases; Methylation; Mice; Microscopy, Fluorescence; Molecular Sequence Data; Peptides; Protein Processing, Post-Translational; Sodium Oxybate; Time Factors; Transcription, Genetic

2004
Dual histone H3 methylation marks at lysines 9 and 27 required for interaction with CHROMOMETHYLASE3.
    The EMBO journal, 2004, Oct-27, Volume: 23, Issue:21

    Topics: Amino Acid Sequence; Animals; Arabidopsis; Arabidopsis Proteins; Chromosomal Proteins, Non-Histone; DNA-Cytosine Methylases; Epigenesis, Genetic; Gene Expression Regulation, Plant; Gene Silencing; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation; Methyltransferases; Models, Genetic; Molecular Sequence Data; Protein Binding; Sequence Alignment

2004
Ligand-dependent activation of the farnesoid X-receptor directs arginine methylation of histone H3 by CARM1.
    The Journal of biological chemistry, 2004, Dec-24, Volume: 279, Issue:52

    Topics: Acetylation; Arginine; ATP Binding Cassette Transporter, Subfamily B, Member 11; ATP-Binding Cassette Transporters; Binding Sites; Blotting, Western; Cell Line; Chromatin; DNA; DNA-Binding Proteins; Drug Synergism; Electrophoresis, Polyacrylamide Gel; Histones; Humans; Immunosorbent Techniques; Lysine; Methylation; Promoter Regions, Genetic; Protein-Arginine N-Methyltransferases; Receptors, Cytoplasmic and Nuclear; RNA, Messenger; Signal Transduction; Transcription Factors; Transfection

2004
Substrate specificity and kinetic mechanism of mammalian G9a histone H3 methyltransferase.
    The Journal of biological chemistry, 2004, Dec-17, Volume: 279, Issue:51

    Topics: Alanine; Animals; Baculoviridae; Binding, Competitive; Catalysis; Cell Line; Dimerization; Dose-Response Relationship, Drug; Genetic Vectors; Genome; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Histones; Homocysteine; Hydrogen-Ion Concentration; Insecta; Kinetics; Lysine; Mass Spectrometry; Methylation; Mice; Models, Chemical; Models, Genetic; Peptides; Phosphorylation; Protein Isoforms; Protein Methyltransferases; Recombinant Proteins; Substrate Specificity; Temperature; Time Factors

2004
Human SWI/SNF-associated PRMT5 methylates histone H3 arginine 8 and negatively regulates expression of ST7 and NM23 tumor suppressor genes.
    Molecular and cellular biology, 2004, Volume: 24, Issue:21

    Topics: Acetylation; Animals; Arginine; Cell Division; Cell Line; Chromosomal Proteins, Non-Histone; DNA Helicases; Gene Expression Regulation; Genes, Tumor Suppressor; Histones; Humans; Lysine; Methylation; Mice; NM23 Nucleoside Diphosphate Kinases; Nuclear Proteins; Nucleoside-Diphosphate Kinase; Promoter Regions, Genetic; Protein Methyltransferases; Protein-Arginine N-Methyltransferases; Transcription Factors; Tumor Suppressor Proteins

2004
Using LC-MS with de novo software to fully characterize the multiple methylations of lysine residues in a recombinant fragment of an outer membrane protein from a virulent strain of Rickettsia prowazekii.
    Biochimica et biophysica acta, 2004, Nov-01, Volume: 1702, Issue:2

    Topics: Amino Acid Sequence; Animals; Bacterial Outer Membrane Proteins; Humans; Lysine; Mass Spectrometry; Methylation; Molecular Sequence Data; Peptide Fragments; Protein Processing, Post-Translational; Recombinant Proteins; Rickettsia prowazekii; Sequence Analysis, Protein; Software

2004
Histone hypomethylation is an indicator of epigenetic plasticity in quiescent lymphocytes.
    The EMBO journal, 2004, Nov-10, Volume: 23, Issue:22

    Topics: Animals; B-Lymphocytes; Blotting, Western; Cells, Cultured; Chromatin; Chromatin Immunoprecipitation; Epigenesis, Genetic; Gene Expression Regulation; Gene Silencing; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Histones; Kinetics; Lysine; Methylation; Mice; Mice, Transgenic; Microscopy, Confocal; Protein Methyltransferases; Resting Phase, Cell Cycle; Reverse Transcriptase Polymerase Chain Reaction; T-Lymphocytes; Up-Regulation

2004
The Polycomb Ezh2 methyltransferase regulates muscle gene expression and skeletal muscle differentiation.
    Genes & development, 2004, Nov-01, Volume: 18, Issue:21

    Topics: Animals; Cell Differentiation; Chromatin; DNA-Binding Proteins; Enhancer of Zeste Homolog 2 Protein; Erythroid-Specific DNA-Binding Factors; Extremities; Gene Expression Regulation, Developmental; Histone Deacetylase 1; Histone Deacetylases; Histone-Lysine N-Methyltransferase; Lysine; Methylation; Methyltransferases; Mice; Mice, Inbred Strains; Muscle, Skeletal; MyoD Protein; Polycomb Repressive Complex 2; Protein Structure, Tertiary; Proteins; Regulatory Sequences, Nucleic Acid; RNA, Small Interfering; Serum Response Factor; Transcription Factors; Transcriptional Activation; YY1 Transcription Factor

2004
Regulation of p53 activity through lysine methylation.
    Nature, 2004, Nov-18, Volume: 432, Issue:7015

    Topics: Amino Acid Sequence; Apoptosis; Cell Line; Cell Nucleus; Gene Expression Regulation; Genes, p53; Genes, ras; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Humans; Lysine; Methylation; Models, Molecular; Molecular Sequence Data; Promoter Regions, Genetic; Protein Binding; Protein Conformation; Protein Methyltransferases; RNA, Messenger; S-Adenosylhomocysteine; Substrate Specificity; Thermodynamics; Tumor Suppressor Protein p53

2004
Methylated lysine 79 of histone H3 targets 53BP1 to DNA double-strand breaks.
    Nature, 2004, Nov-18, Volume: 432, Issue:7015

    Topics: Amino Acid Sequence; Binding Sites; Cell Line, Tumor; Chromatin; Conserved Sequence; Cross-Linking Reagents; DNA; DNA Damage; Histone-Lysine N-Methyltransferase; Histones; Humans; Intracellular Signaling Peptides and Proteins; Lysine; Methylation; Methyltransferases; Models, Molecular; Molecular Sequence Data; Phosphoproteins; Protein Binding; Protein Structure, Tertiary; Tumor Suppressor p53-Binding Protein 1

2004
Chemotherapy for the brain: the antitumor antibiotic mithramycin prolongs survival in a mouse model of Huntington's disease.
    The Journal of neuroscience : the official journal of the Society for Neuroscience, 2004, Nov-17, Volume: 24, Issue:46

    Topics: Animals; Antibiotics, Antineoplastic; Brain; Cells, Cultured; Gene Silencing; Humans; Huntingtin Protein; Huntington Disease; In Vitro Techniques; Lysine; Male; Methylation; Mice; Mice, Transgenic; Mitochondria, Liver; Motor Activity; N-Methylaspartate; Nerve Tissue Proteins; Neurons; Nuclear Proteins; Plicamycin; Rats; Rats, Inbred BN; Rats, Inbred F344; Receptors, Glutamate; Transcription, Genetic

2004
Methylation of histone H4 lysine 20 controls recruitment of Crb2 to sites of DNA damage.
    Cell, 2004, Nov-24, Volume: 119, Issue:5

    Topics: Cell Cycle Proteins; Cell Survival; DNA Damage; Gene Expression Regulation, Fungal; Genes, cdc; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Histones; Intracellular Signaling Peptides and Proteins; Lysine; Methylation; Mutation; Nuclear Proteins; Phosphoproteins; Protein Methyltransferases; Protein Transport; Schizosaccharomyces; Schizosaccharomyces pombe Proteins

2004
Distinct dynamics and distribution of histone methyl-lysine derivatives in mouse development.
    Developmental biology, 2004, Dec-15, Volume: 276, Issue:2

    Topics: Animals; Cell Differentiation; Cells, Cultured; Embryo, Mammalian; Embryonic Structures; Gene Expression Regulation, Developmental; Gestational Age; Histones; Lysine; Methylation; Mice; Muscle, Skeletal; Myoblasts; Neurons

2004
Developmentally regulated alterations in Polycomb repressive complex 1 proteins on the inactive X chromosome.
    The Journal of cell biology, 2004, Dec-20, Volume: 167, Issue:6

    Topics: Animals; Carrier Proteins; Cell Line; Dosage Compensation, Genetic; Drosophila; Drosophila Proteins; Female; Histones; Humans; Kinetics; Lysine; Macromolecular Substances; Methylation; Mice; Polycomb Repressive Complex 1; Polycomb-Group Proteins; Repressor Proteins; Species Specificity; X Chromosome

2004
Histone demethylation mediated by the nuclear amine oxidase homolog LSD1.
    Cell, 2004, Dec-29, Volume: 119, Issue:7

    Topics: Conserved Sequence; Formaldehyde; Gene Expression Regulation; HeLa Cells; Histone Demethylases; Histones; Humans; Lysine; Mass Spectrometry; Methylation; Nuclear Proteins; Oxidoreductases, N-Demethylating; Recombinant Proteins; Repressor Proteins; RNA Interference; Schizosaccharomyces pombe Proteins; Substrate Specificity; Transcription, Genetic

2004
The DNA damage checkpoint response requires histone H2B ubiquitination by Rad6-Bre1 and H3 methylation by Dot1.
    The Journal of biological chemistry, 2005, Mar-18, Volume: 280, Issue:11

    Topics: Binding Sites; Blotting, Western; Cell Cycle; Cell Cycle Proteins; Cell Separation; Checkpoint Kinase 2; Chromatin; DNA Damage; Electrophoresis, Polyacrylamide Gel; Enzyme Activation; Flow Cytometry; Histone-Lysine N-Methyltransferase; Histones; Intracellular Signaling Peptides and Proteins; Lysine; Methylation; Nuclear Proteins; Phosphorylation; Plasmids; Protein Serine-Threonine Kinases; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins; Serine; Time Factors; Ubiquitin; Ubiquitin-Conjugating Enzymes; Ultraviolet Rays

2005
S-adenosylhomocysteine hydrolase from the archaeon Pyrococcus furiosus: biochemical characterization and analysis of protein structure by comparative molecular modeling.
    Proteins, 2005, Mar-01, Volume: 58, Issue:4

    Topics: Adenosine; Adenosylhomocysteinase; Amino Acid Sequence; Catalysis; Cloning, Molecular; Cysteine; Disulfides; Electrophoresis, Polyacrylamide Gel; Homocysteine; Hot Temperature; Kinetics; Lysine; Methylation; Models, Molecular; Molecular Sequence Data; Plasmids; Protein Binding; Protein Conformation; Protein Structure, Tertiary; Pyrococcus; Pyrococcus furiosus; Recombinant Proteins; Sequence Homology, Amino Acid; Sulfolobus solfataricus; Temperature; Threonine

2005
Chd1 chromodomain links histone H3 methylation with SAGA- and SLIK-dependent acetylation.
    Nature, 2005, Jan-27, Volume: 433, Issue:7024

    Topics: Acetylation; Acetyltransferases; Amino Acid Sequence; Chromatin Immunoprecipitation; DNA-Binding Proteins; Gene Deletion; Histone Acetyltransferases; Histones; Lysine; Methylation; Molecular Sequence Data; Multiprotein Complexes; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins; Substrate Specificity

2005
The ESC-E(Z) complex participates in the hedgehog signaling pathway.
    Biochemical and biophysical research communications, 2005, Feb-25, Volume: 327, Issue:4

    Topics: Amino Acid Sequence; Animals; Fish Proteins; Gene Expression Regulation, Developmental; Hedgehog Proteins; Histones; Humans; Hydroxamic Acids; Lysine; Methylation; Molecular Sequence Data; Multiprotein Complexes; Oryzias; Phenotype; Phylogeny; Protein Binding; Sequence Alignment; Signal Transduction; Trans-Activators

2005
Genomic maps and comparative analysis of histone modifications in human and mouse.
    Cell, 2005, Jan-28, Volume: 120, Issue:2

    Topics: Acetylation; Animals; Chromatin; Chromosome Mapping; Chromosomes, Human, Pair 21; Chromosomes, Human, Pair 22; Genome; Histones; Homeodomain Proteins; Humans; Lysine; Methylation; Mice; Receptors, Interleukin-4

2005
PR-Set7-dependent methylation of histone H4 Lys 20 functions in repression of gene expression and is essential for mitosis.
    Genes & development, 2005, Feb-15, Volume: 19, Issue:4

    Topics: Animals; Blotting, Western; Drosophila; Drosophila Proteins; Gene Silencing; Histone-Lysine N-Methyltransferase; Histones; Lysine; Methylation; Mitosis

2005
Maintenance of low histone ubiquitylation by Ubp10 correlates with telomere-proximal Sir2 association and gene silencing.
    Molecular cell, 2005, Feb-18, Volume: 17, Issue:4

    Topics: Acetylation; Chromatin Immunoprecipitation; DNA, Ribosomal; Down-Regulation; Gene Expression Regulation, Fungal; Gene Silencing; Histone Deacetylases; Histones; Lysine; Methylation; Nuclear Proteins; Proteasome Endopeptidase Complex; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins; Silent Information Regulator Proteins, Saccharomyces cerevisiae; Sirtuin 2; Sirtuins; Telomere; Transcription, Genetic; Transcriptional Activation; Ubiquitin; Ubiquitin Thiolesterase

2005
Nuclear proteasome activation and degradation of carboxymethylated histones in human keratinocytes following glyoxal treatment.
    Free radical biology & medicine, 2005, Mar-15, Volume: 38, Issue:6

    Topics: Blotting, Western; Cell Line; Cell Nucleus; Cell Proliferation; Chromatography, High Pressure Liquid; Cycloheximide; Cysteine Endopeptidases; Dose-Response Relationship, Drug; Glycols; Glyoxal; Histones; Humans; Keratinocytes; Lysine; Methylation; Models, Biological; Oxidative Stress; Oxygen; Poly(ADP-ribose) Polymerases; Proteasome Endopeptidase Complex; Protein Synthesis Inhibitors; Time Factors

2005
Relationship between histone H3 lysine 9 methylation, transcription repression, and heterochromatin protein 1 recruitment.
    Molecular and cellular biology, 2005, Volume: 25, Issue:7

    Topics: Acetylation; Chromatin; Chromobox Protein Homolog 5; Chromosomal Proteins, Non-Histone; Gene Silencing; Histones; Humans; Lysine; Methylation; Transcription, Genetic

2005
Histone methyltransferases G9a and GLP form heteromeric complexes and are both crucial for methylation of euchromatin at H3-K9.
    Genes & development, 2005, Apr-01, Volume: 19, Issue:7

    Topics: Animals; Euchromatin; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Histones; Lysine; Methylation; Mice; Protein Methyltransferases; Protein Structure, Quaternary; Stem Cells

2005
Differential subnuclear localization and replication timing of histone H3 lysine 9 methylation states.
    Molecular biology of the cell, 2005, Volume: 16, Issue:6

    Topics: Animals; Antibodies, Monoclonal; Cell Line, Tumor; Cell Nucleus; CHO Cells; Cricetinae; Cricetulus; DNA; Epigenesis, Genetic; Epitopes; Fluorescent Dyes; Heterochromatin; Histone-Lysine N-Methyltransferase; Histones; Humans; Indoles; Lysine; Methylation; Mice; Microscopy, Confocal; S Phase

2005
A novel domain in Set2 mediates RNA polymerase II interaction and couples histone H3 K36 methylation with transcript elongation.
    Molecular and cellular biology, 2005, Volume: 25, Issue:8

    Topics: Alleles; Amino Acid Substitution; Chromatin; Chromatin Immunoprecipitation; Conserved Sequence; Histones; Lysine; Methylation; Methyltransferases; Protein Interaction Mapping; Protein Structure, Tertiary; RNA Polymerase II; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins; Sequence Deletion; Transcription, Genetic; Uracil

2005
Histone demethylation catalysed by LSD1 is a flavin-dependent oxidative process.
    FEBS letters, 2005, Apr-11, Volume: 579, Issue:10

    Topics: Catalysis; Flavins; Histone Demethylases; Histones; Lysine; Methylation; Oxidation-Reduction; Oxidoreductases, N-Demethylating; Substrate Specificity

2005
RNA helicase A is important for germline transcriptional control, proliferation, and meiosis in C. elegans.
    Mechanisms of development, 2005, Volume: 122, Issue:5

    Topics: Animals; Autoantigens; Caenorhabditis elegans; Cell Death; Cell Proliferation; Chromatin; DEAD-box RNA Helicases; Gene Deletion; Gene Expression Regulation, Developmental; Gene Silencing; Histones; Immunohistochemistry; In Situ Hybridization; Lysine; Meiosis; Methylation; Mitosis; Models, Genetic; Neoplasm Proteins; Phenotype; Reverse Transcriptase Polymerase Chain Reaction; RNA; RNA Helicases; Temperature; Transcription, Genetic

2005
Are STATS arginine-methylated?
    The Journal of biological chemistry, 2005, Jun-10, Volume: 280, Issue:23

    Topics: Animals; Arginine; Blotting, Western; Cell Line, Tumor; DNA-Binding Proteins; Extracellular Signal-Regulated MAP Kinases; Fibrosarcoma; Gene Expression Regulation, Neoplastic; Genes, Reporter; Glutathione Transferase; Humans; Immunoprecipitation; Interferon-alpha; Interferons; Interleukin-6; Lysine; Melanoma; Methylation; Methyltransferases; Mice; Models, Molecular; Mutagenesis, Site-Directed; Mutation; Oncostatin M; p38 Mitogen-Activated Protein Kinases; Peptides; Phosphatidylinositol 3-Kinases; Plasmids; Protein Structure, Tertiary; Receptors, Interleukin-6; Recombinant Fusion Proteins; Recombinant Proteins; Signal Transduction; STAT1 Transcription Factor; STAT3 Transcription Factor; Trans-Activators; Transfection; Tyrosine

2005
Small interfering RNAs that trigger posttranscriptional gene silencing are not required for the histone H3 Lys9 methylation necessary for transgenic tandem repeat stabilization in Neurospora crassa.
    Molecular and cellular biology, 2005, Volume: 25, Issue:9

    Topics: Chromatin Immunoprecipitation; Gene Expression Regulation, Fungal; Genes, Fungal; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Histones; Lysine; Methylation; Mutation; Neurospora crassa; Protein Methyltransferases; RNA Interference; RNA, Small Interfering; Tandem Repeat Sequences; Transcription, Genetic; Transgenes

2005
Transcriptional silencing of nonsense codon-containing immunoglobulin minigenes.
    Molecular cell, 2005, Apr-29, Volume: 18, Issue:3

    Topics: Base Sequence; Codon, Nonsense; Exonucleases; Gene Silencing; Genes, Immunoglobulin; Genes, Reporter; HeLa Cells; Histone Deacetylase Inhibitors; Histone Deacetylases; Histones; Humans; Immunoglobulins; Lysine; Methylation; RNA Interference; Sequence Alignment; Transcription, Genetic

2005
The expression of endothelial nitric-oxide synthase is controlled by a cell-specific histone code.
    The Journal of biological chemistry, 2005, Jul-01, Volume: 280, Issue:26

    Topics: Acetylation; Animals; Azacitidine; beta-Galactosidase; Blotting, Western; Cell Line; Cell Nucleus; Cells, Cultured; Chromatin; Chromatin Immunoprecipitation; CpG Islands; DNA Methylation; Endothelium, Vascular; HeLa Cells; Histones; Humans; Hydroxamic Acids; Lysine; Methylation; Mice; Mice, Transgenic; Models, Genetic; Muscle, Smooth; Nitric Oxide Synthase; Nitric Oxide Synthase Type II; Nitric Oxide Synthase Type III; Nucleosomes; Promoter Regions, Genetic; Protein Binding; Protein Structure, Tertiary; Reverse Transcriptase Polymerase Chain Reaction; RNA Polymerase II; Serine; Time Factors; Transgenes; Umbilical Veins

2005
In vivo HP1 targeting causes large-scale chromatin condensation and enhanced histone lysine methylation.
    Molecular and cellular biology, 2005, Volume: 25, Issue:11

    Topics: Cells, Cultured; Chromobox Protein Homolog 5; Chromosomal Proteins, Non-Histone; Chromosomes, Human; Gene Silencing; Green Fluorescent Proteins; Heterochromatin; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation; Operator Regions, Genetic; Protein Methyltransferases; Recombinant Fusion Proteins; Repressor Proteins

2005
Mapping global histone methylation patterns in the coding regions of human genes.
    Molecular and cellular biology, 2005, Volume: 25, Issue:11

    Topics: Euchromatin; Gene Silencing; Genome, Human; Heterochromatin; Histones; Humans; Lysine; Methylation; Oligonucleotide Array Sequence Analysis; Open Reading Frames

2005
The murine polycomb group protein Eed is required for global histone H3 lysine-27 methylation.
    Current biology : CB, 2005, May-24, Volume: 15, Issue:10

    Topics: Animals; Blotting, Northern; Blotting, Western; Cloning, Molecular; Embryo, Mammalian; Epigenesis, Genetic; Fluorescent Antibody Technique; Gene Silencing; Genetic Vectors; Histones; Lysine; Methylation; Mice; Polycomb Repressive Complex 2; Repressor Proteins; Reverse Transcriptase Polymerase Chain Reaction; Stem Cells

2005
Asymmetry in histone H3 variants and lysine methylation between paternal and maternal chromatin of the early mouse zygote.
    Mechanisms of development, 2005, Volume: 122, Issue:9

    Topics: Animals; Cell Cycle Proteins; Chromatin; Epigenesis, Genetic; Epitope Mapping; Female; Fertilization; Fluorescent Antibody Technique; Genetic Variation; Histone Chaperones; Histones; Lysine; Male; Methylation; Mice; Mice, Inbred CBA; Nucleosomes; Pregnancy; Protamines; Spermatozoa; Transcription Factors; Zygote

2005
Functional analysis of the N- and C-terminus of mammalian G9a histone H3 methyltransferase.
    Nucleic acids research, 2005, Volume: 33, Issue:10

    Topics: Amino Acid Sequence; Animals; Cell Nucleus; DNA Mutational Analysis; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Histones; Lysine; Methylation; Mice; Molecular Sequence Data; Nuclear Localization Signals; Protein Methyltransferases; Protein Structure, Tertiary

2005
Dynamic lysine methylation on histone H3 defines the regulatory phase of gene transcription.
    Molecular cell, 2005, Jun-10, Volume: 18, Issue:6

    Topics: DNA, Fungal; Gene Expression Regulation; Histones; Kinetics; Lysine; Methylation; Oligonucleotide Array Sequence Analysis; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins; Transcription, Genetic

2005
WDR5 associates with histone H3 methylated at K4 and is essential for H3 K4 methylation and vertebrate development.
    Cell, 2005, Jun-17, Volume: 121, Issue:6

    Topics: Animals; Cell Line; Genes, Homeobox; Heterotrimeric GTP-Binding Proteins; Histone-Lysine N-Methyltransferase; Histones; Humans; Intracellular Signaling Peptides and Proteins; Lysine; Macromolecular Substances; Methylation; Microfilament Proteins; Nucleosomes; Vertebrates; Xenopus laevis

2005
Global loss of Set1-mediated H3 Lys4 trimethylation is associated with silencing defects in Saccharomyces cerevisiae.
    The Journal of biological chemistry, 2005, Aug-05, Volume: 280, Issue:31

    Topics: Base Sequence; Cell Division; DNA Primers; DNA-Binding Proteins; DNA, Fungal; DNA, Recombinant; Gene Silencing; Histone-Lysine N-Methyltransferase; Lysine; Methylation; Peptide Fragments; Plasmids; Protein Processing, Post-Translational; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins; Transcription Factors

2005
SET8 recognizes the sequence RHRK20VLRDN within the N terminus of histone H4 and mono-methylates lysine 20.
    The Journal of biological chemistry, 2005, Aug-26, Volume: 280, Issue:34

    Topics: Alanine; Arginine; DNA Methylation; Glutamine; Glutathione Transferase; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Mass Spectrometry; Methionine; Methylation; Mutation; Peptides; Plasmids; Protein Structure, Tertiary; Recombinant Proteins; Substrate Specificity

2005
Astrocyte- and hepatocyte-specific expression of genes from the distal serpin subcluster at 14q32.1 associates with tissue-specific chromatin structures.
    Journal of neurochemistry, 2005, Volume: 94, Issue:3

    Topics: Astrocytes; Blotting, Northern; Carrier Proteins; Cells, Cultured; Chromatin; Chromatin Immunoprecipitation; Chromosome Mapping; Chromosomes, Human, Pair 14; Chymotrypsin; Cytokines; Deoxyribonuclease I; Enhancer Elements, Genetic; Gene Expression Regulation; Hepatocytes; Histones; Humans; Locus Control Region; Lysine; Methylation; Promoter Regions, Genetic; Protein C Inhibitor; Reverse Transcriptase Polymerase Chain Reaction; RNA, Messenger; Serine Proteinase Inhibitors; Serpins; Transcription, Genetic; Transfection

2005
An archaeal SET domain protein exhibits distinct lysine methyltransferase activity towards DNA-associated protein MC1-alpha.
    FEBS letters, 2005, Jul-04, Volume: 579, Issue:17

    Topics: Amino Acid Sequence; Archaeal Proteins; Chromatin; Dimerization; DNA-Binding Proteins; Genes, Archaeal; Histone-Lysine N-Methyltransferase; Lysine; Methanosarcina; Methylation; Molecular Sequence Data; Substrate Specificity

2005
Ubp10/Dot4p regulates the persistence of ubiquitinated histone H2B: distinct roles in telomeric silencing and general chromatin.
    Molecular and cellular biology, 2005, Volume: 25, Issue:14

    Topics: Chromatin; Endopeptidases; Gene Deletion; Gene Silencing; Histones; Lysine; Methylation; Nuclear Proteins; Saccharomyces cerevisiae Proteins; Telomere; Ubiquitin; Ubiquitin Thiolesterase

2005
Histone methylation at gene promoters is associated with developmental regulation and region-specific expression of ionotropic and metabotropic glutamate receptors in human brain.
    Journal of neurochemistry, 2005, Volume: 94, Issue:2

    Topics: Aged; Analysis of Variance; Cerebral Cortex; Chromatin; Fetus; Gene Expression Regulation, Developmental; Gestational Age; Histone-Lysine N-Methyltransferase; Histones; Humans; Immunohistochemistry; Immunoprecipitation; Infant, Newborn; Lysine; Methylation; Nucleosomes; Postmortem Changes; Promoter Regions, Genetic; Receptors, Glutamate; Reverse Transcriptase Polymerase Chain Reaction; RNA, Messenger

2005
Arginine methylation of yeast mRNA-binding protein Npl3 directly affects its function, nuclear export, and intranuclear protein interactions.
    The Journal of biological chemistry, 2005, Sep-02, Volume: 280, Issue:35

    Topics: Active Transport, Cell Nucleus; Amino Acid Sequence; Arginine; Humans; Lysine; Methylation; Molecular Sequence Data; Mutagenesis, Site-Directed; Nuclear Proteins; Peptides; Protein Interaction Mapping; RNA-Binding Proteins; Saccharomyces cerevisiae Proteins; Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization; Spectroscopy, Fourier Transform Infrared; Transcription Factors

2005
Increased lysine N-methylation of a 23-kDa protein during hepatic regeneration.
    Experimental & molecular medicine, 2005, Jun-30, Volume: 37, Issue:3

    Topics: Animals; Cytochromes c; DNA Helicases; Hepatectomy; Histone-Lysine N-Methyltransferase; Histones; Liver; Liver Regeneration; Lysine; Methylation; Proteins; Rats; Rats, Sprague-Dawley

2005
BUR kinase selectively regulates H3 K4 trimethylation and H2B ubiquitylation through recruitment of the PAF elongation complex.
    Current biology : CB, 2005, Aug-23, Volume: 15, Issue:16

    Topics: Chromatin Immunoprecipitation; Cyclins; DNA-Binding Proteins; Gene Expression Regulation, Fungal; Histone-Lysine N-Methyltransferase; Histones; Immunoblotting; Lysine; Methylation; Microarray Analysis; Nuclear Proteins; Saccharomyces cerevisiae Proteins; Transcription Factors; Ubiquitin-Conjugating Enzymes; Yeasts

2005
The Wnt-NLK signaling pathway inhibits A-Myb activity by inhibiting the association with coactivator CBP and methylating histone H3.
    Molecular biology of the cell, 2005, Volume: 16, Issue:10

    Topics: Animals; Carrier Proteins; Cell Line; Chlorocebus aethiops; CREB-Binding Protein; Histones; Humans; Lysine; Methylation; Mitogen-Activated Protein Kinases; Phosphorylation; Promoter Regions, Genetic; Protein Binding; Proto-Oncogene Mas; Proto-Oncogene Proteins; Signal Transduction; Trans-Activators; Transcriptional Activation; Wnt Proteins

2005
Subunit contributions to histone methyltransferase activities of fly and worm polycomb group complexes.
    Molecular and cellular biology, 2005, Volume: 25, Issue:16

    Topics: Animals; Baculoviridae; Blotting, Western; Caenorhabditis elegans; Catalytic Domain; Chromatin; Chromosomal Proteins, Non-Histone; DNA Methylation; DNA Mutational Analysis; Dose-Response Relationship, Drug; Drosophila melanogaster; Drosophila Proteins; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Macromolecular Substances; Methylation; Models, Biological; Molecular Chaperones; Multiprotein Complexes; Mutagenesis, Site-Directed; Mutation; Mutation, Missense; Polycomb Repressive Complex 1; Polycomb Repressive Complex 2; Protein Binding; Protein Methyltransferases; Protein Structure, Tertiary; Recombinant Fusion Proteins; Recombinant Proteins; Repressor Proteins; Retinoblastoma-Binding Protein 4; Zinc Fingers

2005
Histone H3 lysine 9 methylation and HP1gamma are associated with transcription elongation through mammalian chromatin.
    Molecular cell, 2005, Aug-05, Volume: 19, Issue:3

    Topics: Animals; Anion Exchange Protein 1, Erythrocyte; Cell Line; Cell Line, Tumor; Chromatin; Chromatin Immunoprecipitation; Chromobox Protein Homolog 5; Chromosomal Proteins, Non-Histone; Dichlororibofuranosylbenzimidazole; DNA-Binding Proteins; Erythroid Cells; Erythroid-Specific DNA-Binding Factors; GATA2 Transcription Factor; Globins; HeLa Cells; Histones; Humans; Interleukin-2; Kinetics; Liver; Lysine; Methylation; Mice; Phosphorylation; Protein Binding; Protein Isoforms; Proto-Oncogene Proteins c-kit; Proto-Oncogene Proteins c-myc; RNA Polymerase II; T-Lymphocytes; Transcription Factors; Transcription, Genetic

2005
An essential role for CoREST in nucleosomal histone 3 lysine 4 demethylation.
    Nature, 2005, Sep-15, Volume: 437, Issue:7057

    Topics: Acetylation; Amino Acid Sequence; Cell Line; DNA-Binding Proteins; Histone Deacetylases; Histone Demethylases; Histones; Humans; Lysine; Methylation; Molecular Sequence Data; Multiprotein Complexes; Nerve Tissue Proteins; Nucleosomes; Oxidoreductases, N-Demethylating

2005
Histone H3 K36 methylation is associated with transcription elongation in Schizosaccharomyces pombe.
    Eukaryotic cell, 2005, Volume: 4, Issue:8

    Topics: Animals; Conserved Sequence; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation; Methyltransferases; Nucleosomes; Phylogeny; Protein Methyltransferases; RNA Polymerase II; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins; Schizosaccharomyces; Sequence Deletion; Transcription, Genetic

2005
Methylation of histone H3 lysine 36 is required for normal development in Neurospora crassa.
    Eukaryotic cell, 2005, Volume: 4, Issue:8

    Topics: Chromatin; Chromatin Immunoprecipitation; Genotype; Histone-Lysine N-Methyltransferase; Histones; Lysine; Methylation; Methyltransferases; Neurospora crassa; Nucleosomes; Phenotype; Saccharomyces cerevisiae Proteins

2005
A novel SET domain methyltransferase modifies ribosomal protein Rpl23ab in yeast.
    The Journal of biological chemistry, 2005, Oct-14, Volume: 280, Issue:41

    Topics: Amino Acid Sequence; Catalysis; Electrophoresis, Polyacrylamide Gel; Endopeptidase K; Gene Deletion; Gene Expression Regulation, Fungal; Genotype; Histone-Lysine N-Methyltransferase; Lysine; Mass Spectrometry; Methylation; Molecular Sequence Data; Mutation; Peptides; Protein Structure, Tertiary; Ribonucleases; Ribosomal Proteins; Ribosomes; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins; Spectrometry, Mass, Electrospray Ionization; Subcellular Fractions; Sucrose; Temperature; Transcription, Genetic; Trypsin

2005
Monomethyl histone H3 lysine 4 as an epigenetic mark for silenced euchromatin in Chlamydomonas.
    The Plant cell, 2005, Volume: 17, Issue:9

    Topics: Algal Proteins; Amino Acid Sequence; Animals; Chlamydomonas reinhardtii; Epigenesis, Genetic; Euchromatin; Gene Expression Regulation, Plant; Gene Silencing; Histones; Lysine; Macromolecular Substances; Methylation; Molecular Sequence Data; Phylogeny; Protein Subunits; Protozoan Proteins; RNA Interference; Sequence Alignment; Two-Hybrid System Techniques

2005
Lysine residues in N-terminal and C-terminal regions of human histone H2A are targets for biotinylation by biotinidase.
    The Journal of nutritional biochemistry, 2006, Volume: 17, Issue:4

    Topics: Acetylation; Amino Acid Sequence; Biotinidase; Biotinylation; Carbon-Nitrogen Ligases; Histones; Humans; Lysine; Methylation; Molecular Sequence Data; Peptide Fragments

2006
Mass spectrometric analysis of histone posttranslational modifications.
    Methods (San Diego, Calif.), 2005, Volume: 36, Issue:4

    Topics: Acetylation; Amino Acid Sequence; Animals; Chromatography, High Pressure Liquid; Fourier Analysis; Histones; Humans; Ions; Lysine; Mass Spectrometry; Methylation; Molecular Weight; Peptide Fragments; Phosphorylation; Protein Processing, Post-Translational; Spectrometry, Mass, Electrospray Ionization; Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization; Trypsin

2005
Trilogies of histone lysine methylation as epigenetic landmarks of the eukaryotic genome.
    Cold Spring Harbor symposia on quantitative biology, 2004, Volume: 69

    Topics: Animals; Chromatin; Drosophila melanogaster; Epigenesis, Genetic; Eukaryotic Cells; Evolution, Molecular; Gene Silencing; Genome; Heterochromatin; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Histones; Lysine; Methylation; Protein Methyltransferases; Saccharomyces cerevisiae; Schizosaccharomyces

2004
The Ezh2 methyltransferase complex: actin up in the cytosol.
    Trends in cell biology, 2005, Volume: 15, Issue:10

    Topics: Actins; Animals; Cytosol; Drosophila melanogaster; Drosophila Proteins; Lysine; Methylation; Multiprotein Complexes; Nuclear Proteins; Polycomb Repressive Complex 2; Proto-Oncogene Proteins c-vav; Repressor Proteins

2005
HP1 binds specifically to Lys26-methylated histone H1.4, whereas simultaneous Ser27 phosphorylation blocks HP1 binding.
    The Journal of biological chemistry, 2005, Nov-11, Volume: 280, Issue:45

    Topics: Animals; Cell Nucleus; Chromobox Protein Homolog 5; Chromosomal Proteins, Non-Histone; HeLa Cells; Histones; Humans; Lysine; Methylation; Mice; Phosphorylation; Phosphoserine; Protein Binding; Substrate Specificity

2005
Lack of telomerase gene expression in alternative lengthening of telomere cells is associated with chromatin remodeling of the hTR and hTERT gene promoters.
    Cancer research, 2005, Sep-01, Volume: 65, Issue:17

    Topics: Acetylation; Cell Line, Tumor; Chromatin; DNA Methylation; DNA-Binding Proteins; Enzyme Activation; Gene Expression; Gene Expression Regulation, Enzymologic; Gene Expression Regulation, Neoplastic; Histones; Humans; Lysine; Methylation; Promoter Regions, Genetic; Telomerase; Telomere; Transcription, Genetic

2005
Pdx-1 links histone H3-Lys-4 methylation to RNA polymerase II elongation during activation of insulin transcription.
    The Journal of biological chemistry, 2005, Oct-28, Volume: 280, Issue:43

    Topics: Adenoviridae; Animals; Cell Line; Chromatin; Chromatin Immunoprecipitation; DNA Methylation; Genetic Vectors; Glutathione Transferase; HeLa Cells; Histones; Homeodomain Proteins; Humans; Immunoblotting; Immunohistochemistry; Immunoprecipitation; Insulin; Insulin-Secreting Cells; Islets of Langerhans; Lysine; Methylation; Mice; Models, Genetic; NIH 3T3 Cells; Phosphorylation; Promoter Regions, Genetic; Protein Isoforms; Protein Structure, Tertiary; Reverse Transcriptase Polymerase Chain Reaction; RNA Polymerase II; RNA, Small Interfering; Serine; Trans-Activators; Transcription, Genetic; Transcriptional Activation; Transfection

2005
Epigenetic basis for the transcriptional hyporesponsiveness of the human inducible nitric oxide synthase gene in vascular endothelial cells.
    Journal of immunology (Baltimore, Md. : 1950), 2005, Sep-15, Volume: 175, Issue:6

    Topics: Cell Line, Tumor; Cells, Cultured; Chromatin; CpG Islands; DNA Methylation; Endothelial Cells; Endothelium, Vascular; Epigenesis, Genetic; Gene Silencing; Histones; Humans; Lysine; Methyl-CpG-Binding Protein 2; Methylation; Muscle, Smooth, Vascular; Promoter Regions, Genetic; Species Specificity; Transcription, Genetic

2005
Methylation patterns of histone H3 Lys 4, Lys 9 and Lys 27 in transcriptionally active and inactive Arabidopsis genes and in atx1 mutants.
    Nucleic acids research, 2005, Volume: 33, Issue:16

    Topics: Arabidopsis; Arabidopsis Proteins; Chromatin; Gene Expression Regulation, Plant; Histone-Lysine N-Methyltransferase; Histones; Lysine; Methylation; Mutation; Nucleosomes; Plant Leaves; Promoter Regions, Genetic; Transcription Factors; Transcription, Genetic

2005
Histone H4-lysine 20 monomethylation is increased in promoter and coding regions of active genes and correlates with hyperacetylation.
    The Journal of biological chemistry, 2005, Nov-18, Volume: 280, Issue:46

    Topics: Acetylation; Animals; Blotting, Western; Butyrates; Cell Differentiation; Cell Line; Cell Line, Tumor; Chromatin; Chromatin Immunoprecipitation; Chromatography, Liquid; Cross-Linking Reagents; Down-Regulation; Exons; Formaldehyde; Globins; Heterochromatin; Histones; Immunoprecipitation; Isobutyrates; Lysine; Methylation; Mice; Microscopy, Fluorescence; Polymerase Chain Reaction; Protein Binding; Proto-Oncogene Proteins c-myc; Reverse Transcriptase Polymerase Chain Reaction; Time Factors; Transcription, Genetic

2005
Role of Dot1-dependent histone H3 methylation in G1 and S phase DNA damage checkpoint functions of Rad9.
    Molecular and cellular biology, 2005, Volume: 25, Issue:19

    Topics: Blotting, Western; Cell Cycle; Cell Cycle Proteins; Checkpoint Kinase 2; Chromatin Immunoprecipitation; DNA; DNA Damage; Dose-Response Relationship, Radiation; Epitopes; G1 Phase; Gene Deletion; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation; Models, Biological; Mutagenesis, Site-Directed; Mutation; Nuclear Proteins; Phosphorylation; Protein Methyltransferases; Protein Serine-Threonine Kinases; Radiation, Ionizing; S Phase; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins; Signal Transduction; Time Factors

2005
Histone H3 lysine 4 mono-methylation does not require ubiquitination of histone H2B.
    Journal of molecular biology, 2005, Oct-28, Volume: 353, Issue:3

    Topics: Histones; Lysine; Methylation; Saccharomyces cerevisiae; Ubiquitin

2005
Fourier transform ion cyclotron resonance mass spectrometry for the analysis of small ubiquitin-like modifier (SUMO) modification: identification of lysines in RanBP2 and SUMO targeted for modification during the E3 autoSUMOylation reaction.
    Analytical chemistry, 2005, Oct-01, Volume: 77, Issue:19

    Topics: Amino Acid Sequence; Cyclotrons; Fourier Analysis; Ions; Lysine; Mass Spectrometry; Methylation; Molecular Chaperones; Molecular Sequence Data; Molecular Weight; Nuclear Pore Complex Proteins; Protein Binding; Recombinant Proteins; Sequence Alignment; Small Ubiquitin-Related Modifier Proteins; Ubiquitin; Ubiquitin-Protein Ligases

2005
Role of histone modifications in marking and activating genes through mitosis.
    The Journal of biological chemistry, 2005, Dec-30, Volume: 280, Issue:52

    Topics: Acetylation; Cell Cycle; Cell Nucleus; Cell Nucleus Division; Chromatin; Chromatin Immunoprecipitation; Cyclin B; Cyclin B1; Fluorescent Antibody Technique, Indirect; Gene Expression Regulation; HeLa Cells; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Histones; Humans; Immunoblotting; Interphase; Lysine; Methylation; Mitosis; Nucleosomes; Polymerase Chain Reaction; Promoter Regions, Genetic; Protein Methyltransferases; Protein Processing, Post-Translational; RNA Polymerase II; Temperature; Transcription, Genetic; Transcriptional Activation

2005
Mapping post-translational modifications of the histone variant MacroH2A1 using tandem mass spectrometry.
    Molecular & cellular proteomics : MCP, 2006, Volume: 5, Issue:1

    Topics: Histones; Immunoprecipitation; Lysine; Methylation; Phosphorylation; Protein Processing, Post-Translational; Spectrometry, Mass, Electrospray Ionization; Ubiquitin

2006
Histone lysine methylation patterns in human cell types are arranged in distinct three-dimensional nuclear zones.
    Histochemistry and cell biology, 2006, Volume: 125, Issue:1-2

    Topics: Algorithms; Cell Cycle; Cell Nucleus; Cells, Cultured; Centromere; DNA; Female; Fibroblasts; Histones; Humans; Image Processing, Computer-Assisted; Immunohistochemistry; Lysine; Methylation; Microscopy, Confocal; RNA

2006
Human histone demethylase LSD1 reads the histone code.
    The Journal of biological chemistry, 2005, Dec-16, Volume: 280, Issue:50

    Topics: Amino Acid Sequence; Catalysis; Chromatin; Chromatography, Gel; Dose-Response Relationship, Drug; Enzyme Inhibitors; Epigenesis, Genetic; Escherichia coli; Flavins; Histone Demethylases; Histones; Humans; Hydrogen-Ion Concentration; Ions; Kinetics; Lysine; Methylation; Models, Biological; Models, Chemical; Models, Genetic; Molecular Sequence Data; Monoamine Oxidase; Oxidoreductases, N-Demethylating; Peptides; Protein Structure, Tertiary; Recombinant Proteins; Serine; Static Electricity; Substrate Specificity; Time Factors

2005
Akt-mediated phosphorylation of EZH2 suppresses methylation of lysine 27 in histone H3.
    Science (New York, N.Y.), 2005, Oct-14, Volume: 310, Issue:5746

    Topics: 3T3 Cells; Animals; Cell Line; Cell Transformation, Neoplastic; Chlorocebus aethiops; Chromones; COS Cells; DNA-Binding Proteins; Enhancer of Zeste Homolog 2 Protein; Enzyme Inhibitors; Gene Expression Regulation; HeLa Cells; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Histones; Homeodomain Proteins; Humans; Lysine; Methylation; Mice; Molecular Sequence Data; Morpholines; Phosphorylation; Polycomb Repressive Complex 2; Protein Binding; Protein Methyltransferases; Protein Serine-Threonine Kinases; Proteins; Proto-Oncogene Proteins; Proto-Oncogene Proteins c-akt; Serine; Transcription Factors

2005
Dimethylation of histone H3 at lysine 36 demarcates regulatory and nonregulatory chromatin genome-wide.
    Molecular and cellular biology, 2005, Volume: 25, Issue:21

    Topics: Chromatin; Chromatin Immunoprecipitation; DNA Primers; Genome, Fungal; Histones; Lysine; Methylation; Methyltransferases; Nucleosomes; Open Reading Frames; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins

2005
Proteomic analysis of organ-specific post-translational lysine-acetylation and -methylation in mice by use of anti-acetyllysine and -methyllysine mouse monoclonal antibodies.
    Proteomics, 2005, Volume: 5, Issue:18

    Topics: Acetylation; Actins; Animals; Antibodies, Monoclonal; Brain Chemistry; Creatine Kinase, MM Form; Cross Reactions; Female; Histones; Horseradish Peroxidase; Hybridomas; Lysine; Methylation; Mice; Muscle Proteins; Muscle, Skeletal; Nerve Tissue Proteins; Organ Specificity; Protein Processing, Post-Translational; Proteomics; Tubulin

2005
Dynamic acetylation of all lysine 4-methylated histone H3 in the mouse nucleus: analysis at c-fos and c-jun.
    PLoS biology, 2005, Volume: 3, Issue:12

    Topics: Acetylation; Animals; Cell Nucleus; Cells, Cultured; Enzyme Activation; Histones; Hydroxamic Acids; Lysine; Methylation; Mice; Mitogen-Activated Protein Kinases; Phosphorylation; Proto-Oncogene Proteins c-fos; Proto-Oncogene Proteins c-jun; Tetradecanoylphorbol Acetate

2005
Human but not yeast CHD1 binds directly and selectively to histone H3 methylated at lysine 4 via its tandem chromodomains.
    The Journal of biological chemistry, 2005, Dec-23, Volume: 280, Issue:51

    Topics: Amino Acid Sequence; DNA Helicases; DNA-Binding Proteins; Histones; Humans; Lysine; Methylation; Molecular Sequence Data; Protein Binding; Saccharomyces cerevisiae Proteins; Sequence Homology, Amino Acid; Species Specificity

2005
Truncated HP1 lacking a functional chromodomain induces heterochromatinization upon in vivo targeting.
    Histochemistry and cell biology, 2006, Volume: 125, Issue:1-2

    Topics: Animals; CHO Cells; Chromatin; Chromobox Protein Homolog 5; Chromosomal Proteins, Non-Histone; Cricetinae; Fluorescent Antibody Technique; Heterochromatin; Histones; Humans; Image Interpretation, Computer-Assisted; Lysine; Methylation; Microscopy, Confocal; Plasmids

2006
Cotranscriptional set2 methylation of histone H3 lysine 36 recruits a repressive Rpd3 complex.
    Cell, 2005, Nov-18, Volume: 123, Issue:4

    Topics: Acetylation; Acetyltransferases; Amino Acid Sequence; Cluster Analysis; Cyclin-Dependent Kinases; Down-Regulation; Epistasis, Genetic; Gene Deletion; Gene Expression Regulation, Fungal; Histone Deacetylases; Histones; Lysine; Methylation; Methyltransferases; Molecular Sequence Data; Mutation; Oligonucleotide Array Sequence Analysis; Protein Binding; Repressor Proteins; RNA Polymerase II; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins; Sequence Homology, Amino Acid; Silent Information Regulator Proteins, Saccharomyces cerevisiae; Sirtuin 2; Sirtuins; Suppression, Genetic; Transcription Factors

2005
Structure and carboxyl-terminal domain (CTD) binding of the Set2 SRI domain that couples histone H3 Lys36 methylation to transcription.
    The Journal of biological chemistry, 2006, Jan-06, Volume: 281, Issue:1

    Topics: Amino Acid Sequence; Chromatin; Conserved Sequence; Gene Expression Regulation, Fungal; Histones; Lysine; Methylation; Methyltransferases; Molecular Sequence Data; Protein Binding; Protein Structure, Tertiary; RNA Polymerase II; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins; Transcription, Genetic

2006
H3 lysine 9 methylation is maintained on a transcribed inverted repeat by combined action of SUVH6 and SUVH4 methyltransferases.
    Molecular and cellular biology, 2005, Volume: 25, Issue:23

    Topics: Arabidopsis; Arabidopsis Proteins; DNA Methylation; DNA, Plant; Histone-Lysine N-Methyltransferase; Histones; Lysine; Methylation; Methyltransferases; Mutation; Plants, Genetically Modified; Repetitive Sequences, Nucleic Acid; Transcription Initiation Site; Transcription, Genetic

2005
Mass spectrometry assisted assignment of NMR resonances in reductively 13C-methylated proteins.
    Journal of the American Chemical Society, 2005, Dec-21, Volume: 127, Issue:50

    Topics: Carbon Isotopes; Dimethylamines; Egg Proteins; Isotope Labeling; Lysine; Methylation; Muramidase; Nuclear Magnetic Resonance, Biomolecular; Peptide Fragments; Proteins; Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization

2005
Drosophila Paf1 modulates chromatin structure at actively transcribed genes.
    Molecular and cellular biology, 2006, Volume: 26, Issue:1

    Topics: Animals; Chromatin; Chromatin Immunoprecipitation; DNA Polymerase II; DNA-Binding Proteins; Drosophila melanogaster; Drosophila Proteins; High Mobility Group Proteins; Histones; HSP70 Heat-Shock Proteins; Lysine; Methylation; Peptide Elongation Factors; Phosphorylation; Promoter Regions, Genetic; RNA Interference; RNA, Messenger; Transcription, Genetic; Transcriptional Activation; Transcriptional Elongation Factors

2006
Leukemogenic MLL fusion proteins bind across a broad region of the Hox a9 locus, promoting transcription and multiple histone modifications.
    Cancer research, 2005, Dec-15, Volume: 65, Issue:24

    Topics: Dimerization; Gene Expression Regulation; Histone-Lysine N-Methyltransferase; Histones; Homeodomain Proteins; Humans; Lysine; Methylation; Myeloid Ecotropic Viral Integration Site 1 Protein; Myeloid-Lymphoid Leukemia Protein; Neoplasm Proteins; Oncogene Proteins, Fusion; Promoter Regions, Genetic; Protein Binding; Transcription, Genetic

2005
Double chromodomains cooperate to recognize the methylated histone H3 tail.
    Nature, 2005, Dec-22, Volume: 438, Issue:7071

    Topics: Amino Acid Sequence; Animals; Chromatin; Chromobox Protein Homolog 5; Chromosomal Proteins, Non-Histone; Crystallography, X-Ray; DNA Helicases; DNA-Binding Proteins; Drosophila Proteins; Histones; Humans; Lysine; Methylation; Models, Molecular; Molecular Sequence Data; Polycomb Repressive Complex 1; Protein Structure, Tertiary; Structure-Activity Relationship

2005
Dynamic changes in histone H3 lysine 9 methylations: identification of a mitosis-specific function for dynamic methylation in chromosome congression and segregation.
    The Journal of biological chemistry, 2006, Mar-31, Volume: 281, Issue:13

    Topics: Adenosine; Animals; Antineoplastic Agents; Cell Line; Cell Line, Transformed; Chromosome Segregation; Chromosomes, Human; Enzyme Inhibitors; Fibroblasts; Flow Cytometry; Fluorescent Antibody Technique, Direct; Fluorescent Dyes; Green Fluorescent Proteins; HeLa Cells; Histones; Humans; Immunoblotting; Indoles; Lysine; Methylation; Mitosis; Muntjacs; Nocodazole; Protein Isoforms; Skin

2006
Methylation changes of lysine 9 of histone H3 during preimplantation mouse development.
    Molecules and cells, 2005, Dec-31, Volume: 20, Issue:3

    Topics: Animals; Blastocyst; Cell Nucleus; Female; Gene Expression Regulation, Developmental; Histones; Lysine; Male; Methylation; Mice; Mice, Inbred C57BL; Oocytes; Swine; Zygote

2005
The tumor suppressor menin regulates hematopoiesis and myeloid transformation by influencing Hox gene expression.
    Proceedings of the National Academy of Sciences of the United States of America, 2006, Jan-24, Volume: 103, Issue:4

    Topics: Animals; Blotting, Western; Cell Line, Transformed; Cell Proliferation; Chromatin Immunoprecipitation; DNA; DNA Methylation; DNA-Binding Proteins; Exons; Flow Cytometry; Gene Expression Regulation; Genotype; Hematopoiesis; Histones; Homeodomain Proteins; Homozygote; Leukemia; Lysine; Methylation; Mice; Mice, Knockout; Mice, Transgenic; Models, Genetic; Models, Statistical; Myeloid Cells; Proto-Oncogene Proteins; Retroviridae; Reverse Transcriptase Polymerase Chain Reaction; Stem Cells; Time Factors; Transgenes

2006
Tudor, MBT and chromo domains gauge the degree of lysine methylation.
    EMBO reports, 2006, Volume: 7, Issue:4

    Topics: Histones; Lysine; Methylation; Protein Array Analysis; Protein Binding; Protein Structure, Tertiary

2006
Substrate preferences of the EZH2 histone methyltransferase complex.
    The Journal of biological chemistry, 2006, Mar-31, Volume: 281, Issue:13

    Topics: Baculoviridae; Chromatin; DNA-Binding Proteins; Electrophoresis, Agar Gel; Enhancer of Zeste Homolog 2 Protein; Genes, Homeobox; Glutathione Transferase; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methionine; Methylation; Nucleosomes; Polycomb Repressive Complex 2; Protein Isoforms; Protein Methyltransferases; Recombinant Fusion Proteins; Substrate Specificity; Sulfur Radioisotopes; Transcription Factors; X Chromosome Inactivation

2006
Accelerated on-column lysine derivatization and cysteine methylation by imidazole reaction in a deuterated environment for enhanced product ion analysis.
    Rapid communications in mass spectrometry : RCM, 2006, Volume: 20, Issue:4

    Topics: Amino Acid Sequence; Cysteine; Deuterium; Erythropoietin; Humans; Imidazoles; Interferon alpha-2; Interferon-alpha; Lysine; Metalloendopeptidases; Methylation; Molecular Sequence Data; Molecular Structure; Recombinant Proteins; Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization; Time Factors; Trypsin

2006
Synthesis of trimethyl (2S,3R)- and (2R,3R)-[2-2H1]-homocitrates and dimethyl (2S,3R)- and (2R,3R)-[2-2H1]-homocitrate lactones-an assay for the stereochemical outcome of the reaction catalysed both by homocitrate synthase and by the Nif-V protein.
    Organic & biomolecular chemistry, 2006, Feb-07, Volume: 4, Issue:3

    Topics: Bacterial Proteins; Catalysis; Lactones; Lysine; Magnetic Resonance Spectroscopy; Methylation; Molecular Structure; Oxo-Acid-Lyases; Stereoisomerism; Tricarboxylic Acids

2006
Developmental timing in Dictyostelium is regulated by the Set1 histone methyltransferase.
    Developmental biology, 2006, Apr-15, Volume: 292, Issue:2

    Topics: Amino Acid Sequence; Animals; Biomarkers; Blotting, Western; Cell Differentiation; Chromatin Immunoprecipitation; Cluster Analysis; Dictyostelium; Gene Expression Profiling; Gene Expression Regulation, Developmental; Genes, Protozoan; Genome, Protozoan; Genomics; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Histones; Luminescent Measurements; Lysine; Methylation; Molecular Sequence Data; Mutation; Oligonucleotide Array Sequence Analysis; Phylogeny; Protein Methyltransferases; Protein Structure, Tertiary; Protozoan Proteins; Sequence Homology, Amino Acid; Time Factors; Transcription, Genetic

2006
Chromatin assembly factor 1 interacts with histone H3 methylated at lysine 79 in the processes of epigenetic silencing and DNA repair.
    Biochemistry, 2006, Mar-07, Volume: 45, Issue:9

    Topics: Amino Acid Sequence; Cell Extracts; Chromatin Assembly Factor-1; Chromosomal Proteins, Non-Histone; DNA Repair; DNA-Binding Proteins; Epigenesis, Genetic; Gene Silencing; Histones; Lysine; Mass Spectrometry; Methylation; Molecular Sequence Data; Nucleosomes; S Phase; Saccharomyces cerevisiae; Silent Information Regulator Proteins, Saccharomyces cerevisiae

2006
A trans-tail histone code defined by monomethylated H4 Lys-20 and H3 Lys-9 demarcates distinct regions of silent chromatin.
    The Journal of biological chemistry, 2006, May-05, Volume: 281, Issue:18

    Topics: Amino Acid Sequence; Animals; Chromatin; Fibroblasts; HeLa Cells; Histones; Humans; Lysine; Methylation; Mice; Molecular Sequence Data; Protein Processing, Post-Translational

2006
Catalytic properties and kinetic mechanism of human recombinant Lys-9 histone H3 methyltransferase SUV39H1: participation of the chromodomain in enzymatic catalysis.
    Biochemistry, 2006, Mar-14, Volume: 45, Issue:10

    Topics: Amino Acid Sequence; Animals; Baculoviridae; Catalytic Domain; Cell Line; Chromatin; Coenzymes; Dose-Response Relationship, Drug; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Histones; Humans; Kinetics; Lysine; Methylation; Methyltransferases; Models, Biological; Molecular Sequence Data; Peptides; Protein Methyltransferases; Recombinant Proteins; Repressor Proteins; S-Adenosylhomocysteine; S-Adenosylmethionine; Spodoptera; Substrate Specificity; Time Factors

2006
Nonadditive regulation of FRI and FLC loci mediates flowering-time variation in Arabidopsis allopolyploids.
    Genetics, 2006, Volume: 173, Issue:2

    Topics: Acetylation; Arabidopsis; Arabidopsis Proteins; Base Sequence; DNA, Plant; Epigenesis, Genetic; Evolution, Molecular; Flowers; Gene Duplication; Gene Expression Regulation, Plant; Gene Silencing; Genes, Plant; Genetic Complementation Test; Genetic Variation; Histones; Lysine; MADS Domain Proteins; Methylation; Molecular Sequence Data; Phylogeny; Polyploidy; Species Specificity; Transcriptional Activation; Up-Regulation

2006
Histone lysine trimethylation exhibits a distinct perinuclear distribution in Plzf-expressing spermatogonia.
    Developmental biology, 2006, May-15, Volume: 293, Issue:2

    Topics: Animals; Base Sequence; Cell Nucleus; DNA; DNA-Binding Proteins; Histones; Kruppel-Like Transcription Factors; Lysine; Male; Methylation; Mice; Mice, Inbred C57BL; Mice, Mutant Strains; Microscopy, Fluorescence; Promyelocytic Leukemia Zinc Finger Protein; Proto-Oncogene Proteins c-kit; Spermatogonia; Testis; Transcription Factors

2006
Methylation of histone H3 mediates the association of the NuA3 histone acetyltransferase with chromatin.
    Molecular and cellular biology, 2006, Volume: 26, Issue:8

    Topics: Blotting, Western; Chromatin; Histone Acetyltransferases; Histones; Lysine; Methylation; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins

2006
The BUR1 cyclin-dependent protein kinase is required for the normal pattern of histone methylation by SET2.
    Molecular and cellular biology, 2006, Volume: 26, Issue:8

    Topics: Alleles; Blotting, Western; Chromatin Immunoprecipitation; Cyclin-Dependent Kinases; DNA-Binding Proteins; Fungal Proteins; Gene Deletion; Gene Expression Regulation, Fungal; Genes, Fungal; Histone-Lysine N-Methyltransferase; Histones; Lysine; Methylation; Open Reading Frames; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins; Transcription Factors

2006
[Histone demethylation isn't what it used to be].
    Medecine sciences : M/S, 2006, Volume: 22, Issue:4

    Topics: Arginine; Citrulline; Dioxygenases; F-Box Proteins; Gene Expression Regulation; Histone Demethylases; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Histones; Humans; Hydrolases; Jumonji Domain-Containing Histone Demethylases; Lysine; Methylation; Oxidoreductases, N-Demethylating; Protein Methyltransferases; Protein Processing, Post-Translational; Protein-Arginine Deiminase Type 4; Protein-Arginine Deiminases

2006
Structural basis for the specific recognition of methylated histone H3 lysine 4 by the WD-40 protein WDR5.
    Molecular cell, 2006, Apr-07, Volume: 22, Issue:1

    Topics: Amino Acid Sequence; Crystallography, X-Ray; Heterotrimeric GTP-Binding Proteins; Histone-Lysine N-Methyltransferase; Histones; Humans; Hydrogen Bonding; Intracellular Signaling Peptides and Proteins; Lysine; Methylation; Molecular Sequence Data; Mutation; Peptide Fragments; Protein Structure, Tertiary; Sequence Homology, Amino Acid

2006
Recognition of histone H3 lysine-4 methylation by the double tudor domain of JMJD2A.
    Science (New York, N.Y.), 2006, May-05, Volume: 312, Issue:5774

    Topics: Amino Acid Motifs; Amino Acid Sequence; Binding Sites; Crystallography, X-Ray; DNA-Binding Proteins; Histones; Humans; Hydrogen Bonding; Jumonji Domain-Containing Histone Demethylases; Lysine; Methylation; Models, Molecular; Molecular Sequence Data; Mutation; Oxidoreductases, N-Demethylating; Protein Binding; Protein Conformation; Protein Folding; Protein Structure, Tertiary; Static Electricity; Transcription Factors

2006
Structural insights of the specificity and catalysis of a viral histone H3 lysine 27 methyltransferase.
    Journal of molecular biology, 2006, May-26, Volume: 359, Issue:1

    Topics: Amino Acid Sequence; Animals; DNA Mutational Analysis; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Histones; Lysine; Methylation; Models, Molecular; Molecular Sequence Data; Mutagenesis, Site-Directed; Nuclear Magnetic Resonance, Biomolecular; Paramecium; Peptides; Phycodnaviridae; Protein Methyltransferases; Protein Structure, Quaternary; S-Adenosylhomocysteine; Sequence Alignment; Viral Proteins

2006
Histone modifications silence the GATA transcription factor genes in ovarian cancer.
    Oncogene, 2006, Aug-31, Volume: 25, Issue:39

    Topics: Acetylation; Adaptor Proteins, Signal Transducing; Apoptosis Regulatory Proteins; Carcinoma; Cell Line, Tumor; Female; GATA Transcription Factors; GATA4 Transcription Factor; GATA6 Transcription Factor; Gene Silencing; Genes, Tumor Suppressor; Heterochromatin; Histones; Humans; Lysine; Methylation; Ovarian Neoplasms; Tumor Suppressor Proteins

2006
Ubp8p, a histone deubiquitinase whose association with SAGA is mediated by Sgf11p, differentially regulates lysine 4 methylation of histone H3 in vivo.
    Molecular and cellular biology, 2006, Volume: 26, Issue:9

    Topics: Alcohol Dehydrogenase; Carrier Proteins; Chromatin Immunoprecipitation; Endopeptidases; Histones; Lysine; Metallothionein; Methylation; Mutation; Promoter Regions, Genetic; Proton-Phosphate Symporters; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins; Trans-Activators; Transcription Factors; Ubiquitin

2006
The retinoblastoma protein regulates pericentric heterochromatin.
    Molecular and cellular biology, 2006, Volume: 26, Issue:9

    Topics: Aneuploidy; Animals; Binding Sites; Cell Cycle; Cells, Cultured; Centromere; Heterochromatin; Histone-Lysine N-Methyltransferase; Histones; Lysine; Methylation; Mice; Mice, Mutant Strains; Mitosis; Mutation; Retinoblastoma Protein

2006
Histone H3 lysine 4 dimethylation signals the transcriptional competence of the adiponectin promoter in preadipocytes.
    The Journal of biological chemistry, 2006, Jun-23, Volume: 281, Issue:25

    Topics: 3T3-L1 Cells; Adipocytes; Adiponectin; Animals; Chromatin; Histones; Lysine; Male; Methylation; Mice; Mice, Inbred C57BL; Promoter Regions, Genetic; Protein Processing, Post-Translational; Transcription, Genetic

2006
A Polycomb group protein complex with sequence-specific DNA-binding and selective methyl-lysine-binding activities.
    Genes & development, 2006, May-01, Volume: 20, Issue:9

    Topics: Amino Acid Sequence; Animals; Animals, Genetically Modified; Chromatin; DNA-Binding Proteins; Drosophila melanogaster; Drosophila Proteins; Embryo, Nonmammalian; Gene Silencing; Histones; Homeodomain Proteins; Lysine; Methylation; Molecular Sequence Data; Polycomb-Group Proteins; Protein Binding; Transcription Factors

2006
Partitioning of the maize epigenome by the number of methyl groups on histone H3 lysines 9 and 27.
    Genetics, 2006, Volume: 173, Issue:3

    Topics: Animals; Cells, Cultured; Centromere; Euchromatin; Evolution, Molecular; Fluorescent Antibody Technique; Genome, Plant; Heterochromatin; Histones; Lysine; Methylation; Mice; Models, Biological; Neocortex; Zea mays

2006
Histone lysine demethylases and their impact on epigenetics.
    Cell, 2006, Apr-21, Volume: 125, Issue:2

    Topics: Animals; Chromatin; Epigenesis, Genetic; Histones; Lysine; Methylation; Oxidoreductases, N-Demethylating

2006
Histone H2A phosphorylation and H3 methylation are required for a novel Rad9 DSB repair function following checkpoint activation.
    DNA repair, 2006, Jun-10, Volume: 5, Issue:6

    Topics: Cell Cycle Proteins; Checkpoint Kinase 2; Chromatin; DNA; DNA Damage; DNA Methylation; DNA Repair; Green Fluorescent Proteins; Histone-Lysine N-Methyltransferase; Histones; Intracellular Signaling Peptides and Proteins; Lysine; Methylation; Nuclear Proteins; Phosphorylation; Protein Serine-Threonine Kinases; Recombination, Genetic; Saccharomyces cerevisiae Proteins

2006
Functional analysis of H2B-Lys-123 ubiquitination in regulation of H3-Lys-4 methylation and recruitment of RNA polymerase II at the coding sequences of several active genes in vivo.
    The Journal of biological chemistry, 2006, Jul-14, Volume: 281, Issue:28

    Topics: Chromatin Immunoprecipitation; DNA Primers; Histones; Lysine; Methylation; Models, Genetic; Open Reading Frames; Plasmids; RNA Polymerase II; Saccharomyces cerevisiae; Ubiquitin

2006
Aurora-B/AIM-1 regulates the dynamic behavior of HP1alpha at the G2-M transition.
    Molecular biology of the cell, 2006, Volume: 17, Issue:7

    Topics: Animals; Aurora Kinase B; Aurora Kinases; Cell Division; Cells, Cultured; Chromobox Protein Homolog 5; Chromosomal Proteins, Non-Histone; Chromosomes; Cricetinae; G2 Phase; Heterochromatin; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation; Mitosis; Phosphorylation; Protein Processing, Post-Translational; Protein Serine-Threonine Kinases; Protein Structure, Tertiary; Rats; Serine

2006
Self-aggregation of fibrillar collagens I and II involves lysine side chains.
    Micron (Oxford, England : 1993), 2006, Volume: 37, Issue:7

    Topics: Acetylation; Collagen Type I; Collagen Type II; Kinetics; Lysine; Macromolecular Substances; Methylation; Microscopy, Electron, Transmission; Nephelometry and Turbidimetry

2006
Determination of the orientation of adsorbed cytochrome C on carboxyalkanethiol self-assembled monolayers by in situ differential modification.
    Journal of the American Chemical Society, 2006, May-31, Volume: 128, Issue:21

    Topics: Amino Acid Sequence; Animals; Binding Sites; Biochemistry; Chromatography, Liquid; Cytochromes c; Electrodes; Gold; Horses; Lysine; Mass Spectrometry; Methylation; Models, Molecular; Molecular Sequence Data; Protein Conformation; Schiff Bases; Trypsin

2006
ING2 PHD domain links histone H3 lysine 4 methylation to active gene repression.
    Nature, 2006, Jul-06, Volume: 442, Issue:7098

    Topics: Amino Acid Motifs; Chromatin; Gene Silencing; Histone Deacetylases; Histones; Homeodomain Proteins; Lysine; Methylation; Protein Binding; Protein Structure, Tertiary; Substrate Specificity; Tumor Suppressor Proteins

2006
A PHD finger of NURF couples histone H3 lysine 4 trimethylation with chromatin remodelling.
    Nature, 2006, Jul-06, Volume: 442, Issue:7098

    Topics: Adenosine Triphosphatases; Amino Acid Motifs; Animals; Antigens, Nuclear; Chromatin Assembly and Disassembly; Chromosomal Proteins, Non-Histone; Epigenesis, Genetic; Gene Expression Regulation; Histones; Humans; Lysine; Methylation; Nerve Tissue Proteins; Transcription Factors; Xenopus

2006
Molecular mechanism of histone H3K4me3 recognition by plant homeodomain of ING2.
    Nature, 2006, Jul-06, Volume: 442, Issue:7098

    Topics: Amino Acid Motifs; Animals; Binding Sites; Conserved Sequence; Crystallography, X-Ray; Histones; Homeodomain Proteins; Hydrogen Bonding; Lysine; Methylation; Mice; Models, Molecular; Mutation; Protein Binding; Protein Structure, Tertiary; Substrate Specificity; Tumor Suppressor Proteins

2006
Molecular basis for site-specific read-out of histone H3K4me3 by the BPTF PHD finger of NURF.
    Nature, 2006, Jul-06, Volume: 442, Issue:7098

    Topics: Amino Acid Motifs; Antigens, Nuclear; Binding Sites; Calorimetry; Chromatin; Chromosomal Proteins, Non-Histone; Crystallography, X-Ray; Histones; Humans; Lysine; Methylation; Models, Molecular; Nerve Tissue Proteins; Nuclear Magnetic Resonance, Biomolecular; Protein Binding; Protein Conformation; Substrate Specificity; Surface Plasmon Resonance; Transcription Factors

2006
Trimethylation of histone H3 lysine 4 by Set1 in the lytic infection of human herpes simplex virus 1.
    Journal of virology, 2006, Volume: 80, Issue:12

    Topics: Gene Expression Regulation, Viral; HeLa Cells; Herpes Simplex; Herpesvirus 1, Human; Histones; Humans; Lysine; Methylation; Methyltransferases; Transcription, Genetic; Virus Replication

2006
The transcriptional repressor JHDM3A demethylates trimethyl histone H3 lysine 9 and lysine 36.
    Nature, 2006, Jul-20, Volume: 442, Issue:7100

    Topics: Animals; Chromobox Protein Homolog 5; Chromosomal Proteins, Non-Histone; DNA-Binding Proteins; Heterochromatin; Histones; Humans; Jumonji Domain-Containing Histone Demethylases; Lysine; Methylation; Mice; Oxidoreductases, N-Demethylating; Protein Structure, Tertiary; Repressor Proteins; Transcription Factors; Transcription, Genetic

2006
The putative oncogene GASC1 demethylates tri- and dimethylated lysine 9 on histone H3.
    Nature, 2006, Jul-20, Volume: 442, Issue:7100

    Topics: Cell Proliferation; HeLa Cells; Histones; Humans; Hydroxylation; Jumonji Domain-Containing Histone Demethylases; Lysine; Methylation; Neoplasm Proteins; Oncogene Proteins; Oncogenes; Protein Binding; Substrate Specificity; Transcription Factors

2006
Jmjd2b antagonizes H3K9 trimethylation at pericentric heterochromatin in mammalian cells.
    Genes & development, 2006, Jun-15, Volume: 20, Issue:12

    Topics: Animals; Cells, Cultured; Chromosomes, Mammalian; Heterochromatin; Histones; Jumonji Domain-Containing Histone Demethylases; Lysine; Methylation; Methyltransferases; Mice; Mixed Function Oxygenases; Neoplasm Proteins; Repressor Proteins

2006
Dynamic and reversible changes in histone H3-Lys4 methylation and H3 acetylation occurring at submergence-inducible genes in rice.
    Plant & cell physiology, 2006, Volume: 47, Issue:7

    Topics: Acetylation; Chromatin; DNA, Plant; Gene Expression Regulation, Plant; Genes, Plant; Histones; Hydroxamic Acids; Lysine; Methylation; Oryza; Plant Proteins; Protein Synthesis Inhibitors; RNA Polymerase II

2006
Structural characterization of Set1 RNA recognition motifs and their role in histone H3 lysine 4 methylation.
    Journal of molecular biology, 2006, Jun-23, Volume: 359, Issue:5

    Topics: Amino Acid Sequence; Conserved Sequence; DNA-Binding Proteins; Histone-Lysine N-Methyltransferase; Histones; Lysine; Methylation; Models, Molecular; Molecular Sequence Data; Protein Binding; Protein Structure, Quaternary; Protein Subunits; RNA, Fungal; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins; Sequence Alignment; Structure-Activity Relationship; Surface Properties; Transcription Factors

2006
Histone H3 lysine 4 demethylation is a target of nonselective antidepressive medications.
    Chemistry & biology, 2006, Volume: 13, Issue:6

    Topics: Amidohydrolases; Antidepressive Agents; Cell Line; Enzyme Inhibitors; Histones; Humans; Lysine; Methylation; Molecular Structure; Monoamine Oxidase; Monoamine Oxidase Inhibitors; Nucleosomes; Tranylcypromine

2006
Sir2 represses endogenous polymerase II transcription units in the ribosomal DNA nontranscribed spacer.
    Molecular biology of the cell, 2006, Volume: 17, Issue:9

    Topics: Base Sequence; DNA, Ribosomal Spacer; Gene Expression Regulation, Fungal; Genes, Mating Type, Fungal; Histone Deacetylases; Histones; Lysine; Methylation; Molecular Sequence Data; Nucleosomes; Promoter Regions, Genetic; Protein Transport; Repressor Proteins; Retroelements; RNA Polymerase II; RNA, Messenger; Saccharomyces cerevisiae; Silent Information Regulator Proteins, Saccharomyces cerevisiae; Sirtuin 2; Sirtuins; Transcription, Genetic

2006
Fragmentations of protonated arginine, lysine and their methylated derivatives: concomitant losses of carbon monoxide or carbon dioxide and an amine.
    The journal of physical chemistry. A, 2006, Jul-13, Volume: 110, Issue:27

    Topics: Amines; Arginine; Carbon Dioxide; Carbon Monoxide; Computer Simulation; Lysine; Mass Spectrometry; Methylation; Models, Chemical; Models, Molecular; Molecular Conformation; Protons

2006
Gene regulation: a finger on the mark.
    Nature, 2006, Jul-06, Volume: 442, Issue:7098

    Topics: Amino Acid Motifs; Animals; Antigens, Nuclear; Chromatin; Gene Expression Regulation; Histones; Homeodomain Proteins; Humans; Lysine; Methylation; Nerve Tissue Proteins; Transcription Factors; Tumor Suppressor Proteins

2006
Uncoupling global and fine-tuning replication timing determinants for mouse pericentric heterochromatin.
    The Journal of cell biology, 2006, Jul-17, Volume: 174, Issue:2

    Topics: Animals; Cells, Cultured; Centrosome; Chromobox Protein Homolog 5; Chromosomal Proteins, Non-Histone; DNA Replication Timing; DNA, Satellite; Fibroblasts; G1 Phase; Heterochromatin; Histones; Lysine; Methylation; Methyltransferases; Mice; Protein Binding; Repressor Proteins; Xenopus

2006
PHinDing a new histone "effector" domain.
    Structure (London, England : 1993), 2006, Volume: 14, Issue:7

    Topics: Animals; DNA; Epigenesis, Genetic; Histones; Lysine; Methylation; Protein Structure, Tertiary

2006
MeMo: a web tool for prediction of protein methylation modifications.
    Nucleic acids research, 2006, Jul-01, Volume: 34, Issue:Web Server

    Topics: Arginine; Artificial Intelligence; Internet; Lysine; Methylation; Protein Processing, Post-Translational; Proteins; Software; User-Computer Interface

2006
The epigenetic magic of histone lysine methylation.
    The FEBS journal, 2006, Volume: 273, Issue:14

    Topics: Animals; Autobiographies as Topic; Epigenesis, Genetic; Forecasting; Gene Silencing; Heterochromatin; Histones; Humans; Lysine; Methylation; Methyltransferases; Models, Biological

2006
Regulation of MLL1 H3K4 methyltransferase activity by its core components.
    Nature structural & molecular biology, 2006, Volume: 13, Issue:8

    Topics: Catalytic Domain; Cell Line; DNA-Binding Proteins; Heterotrimeric GTP-Binding Proteins; Histone-Lysine N-Methyltransferase; Histones; Humans; Intracellular Signaling Peptides and Proteins; Lysine; Methylation; Multiprotein Complexes; Myeloid-Lymphoid Leukemia Protein; Nuclear Proteins; Recombinant Proteins; RNA Interference; Transcription Factors

2006
Histone trimethylation and the maintenance of transcriptional ON and OFF states by trxG and PcG proteins.
    Genes & development, 2006, Aug-01, Volume: 20, Issue:15

    Topics: Animals; Animals, Genetically Modified; Chromatin; Drosophila melanogaster; Drosophila Proteins; Gene Silencing; Histone-Lysine N-Methyltransferase; Histones; Homeodomain Proteins; Immunoglobulin G; Lysine; Membrane Proteins; Methylation; Nuclear Proteins; Polycomb Repressive Complex 1; Promoter Regions, Genetic; Rabbits; Repressor Proteins; Response Elements; Thioredoxins; Transcription Factors; Transcription, Genetic

2006
Molecular regulation of H3K4 trimethylation by ASH2L, a shared subunit of MLL complexes.
    Nature structural & molecular biology, 2006, Volume: 13, Issue:9

    Topics: DNA-Binding Proteins; HeLa Cells; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation; Models, Biological; Myeloid-Lymphoid Leukemia Protein; Nuclear Proteins; Protein Subunits; Transcription Factors

2006
Selective di- or trimethylation of histone H3 lysine 76 by two DOT1 homologs is important for cell cycle regulation in Trypanosoma brucei.
    Molecular cell, 2006, Volume: 23, Issue:4

    Topics: 5' Untranslated Regions; Amino Acid Sequence; Animals; Base Sequence; Cell Differentiation; Conserved Sequence; Gene Expression; Genes, Developmental; Histones; Life Cycle Stages; Lysine; Methylation; Mitosis; Molecular Sequence Data; Nucleosomes; Protozoan Proteins; Sequence Alignment; Sequence Homology, Amino Acid; Trypanosoma brucei brucei

2006
Protein interactions within the Set1 complex and their roles in the regulation of histone 3 lysine 4 methylation.
    The Journal of biological chemistry, 2006, Nov-17, Volume: 281, Issue:46

    Topics: DNA-Binding Proteins; Gene Expression Regulation, Fungal; Histone-Lysine N-Methyltransferase; Histones; Lysine; Methylation; Protein Binding; Protein Subunits; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins; Transcription Factors

2006
The Yng1p plant homeodomain finger is a methyl-histone binding module that recognizes lysine 4-methylated histone H3.
    Molecular and cellular biology, 2006, Volume: 26, Issue:21

    Topics: Animals; Chromatin; Histone Acetyltransferases; Histones; Lysine; Methylation; Protein Binding; Protein Structure, Tertiary; Recombinant Fusion Proteins; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins

2006
Pronuclear stage porcine embryos do not possess a strict asymmetric distribution of lysine 9 dimethylation of histone H3 based solely on parental origin.
    Molecular reproduction and development, 2007, Volume: 74, Issue:1

    Topics: Androgens; Animals; Cell Nucleus; Embryo, Mammalian; Epigenesis, Genetic; Female; Histones; Lysine; Methylation; Parthenogenesis; Sus scrofa; Tissue Distribution

2007
Dynamic regulation of histone modifications in Xenopus oocytes through histone exchange.
    Molecular and cellular biology, 2006, Volume: 26, Issue:18

    Topics: Acetylation; Animals; Chromatin; Chromatin Assembly and Disassembly; DNA Replication; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Histones; Hydroxamic Acids; Lysine; Methylation; Oocytes; Protein Methyltransferases; Time Factors; Transcription, Genetic; Xenopus laevis

2006
Structural basis for molecular recognition and presentation of histone H3 by WDR5.
    The EMBO journal, 2006, Sep-20, Volume: 25, Issue:18

    Topics: Amino Acid Sequence; Crystallography, X-Ray; Heterotrimeric GTP-Binding Proteins; Histone-Lysine N-Methyltransferase; Histones; Humans; Hydrogen Bonding; In Vitro Techniques; Intracellular Signaling Peptides and Proteins; Lysine; Methylation; Models, Molecular; Molecular Sequence Data; Multiprotein Complexes; Protein Binding; Protein Structure, Tertiary; Recombinant Proteins; Sequence Homology, Amino Acid; Thermodynamics

2006
RIZ1 repression is associated with insulin-like growth factor-1 signaling activation in chronic myeloid leukemia cell lines.
    Oncogene, 2007, Mar-08, Volume: 26, Issue:11

    Topics: DNA-Binding Proteins; Gene Expression Regulation; Histone-Lysine N-Methyltransferase; Histones; Humans; Insulin-Like Growth Factor I; K562 Cells; Leukemia, Myelogenous, Chronic, BCR-ABL Positive; Lysine; Methylation; Nuclear Proteins; Oligonucleotide Array Sequence Analysis; Promoter Regions, Genetic; Signal Transduction; Transcription Factors

2007
Silencing by plant Polycomb-group genes requires dispersed trimethylation of histone H3 at lysine 27.
    The EMBO journal, 2006, Oct-04, Volume: 25, Issue:19

    Topics: AGAMOUS Protein, Arabidopsis; Alleles; Amino Acid Sequence; Arabidopsis; Arabidopsis Proteins; Carrier Proteins; Cell Nucleus; Cold Temperature; DNA-Binding Proteins; Gene Silencing; Genes, Plant; Histones; Homeodomain Proteins; Lysine; MADS Domain Proteins; Methylation; Mitosis; Models, Genetic; Molecular Sequence Data; Nuclear Proteins; Plant Leaves; Plant Roots; Point Mutation; Polycomb-Group Proteins; Protein Structure, Tertiary; Repressor Proteins; Transgenes

2006
Proline isomerization of histone H3 regulates lysine methylation and gene expression.
    Cell, 2006, Sep-08, Volume: 126, Issue:5

    Topics: Amino Acid Sequence; Binding Sites; Gene Expression Regulation; Histone Chaperones; Histones; Isomerism; Lysine; Methylation; Models, Molecular; Molecular Sequence Data; Mutation; Oxidoreductases; Proline; Recombinant Proteins; RNA, Messenger; Saccharomyces cerevisiae Proteins; Tacrolimus Binding Proteins; Transcription, Genetic

2006
Fermentation of high concentrations of maltose by Saccharomyces cerevisiae is limited by the COMPASS methylation complex.
    Applied and environmental microbiology, 2006, Volume: 72, Issue:11

    Topics: alpha-Glucosidases; Culture Media; Fermentation; Gene Expression Regulation, Fungal; Gene Silencing; Histones; Lysine; Maltose; Methylation; Monosaccharide Transport Proteins; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins; Telomere

2006
Hypoxic stress induces dimethylated histone H3 lysine 9 through histone methyltransferase G9a in mammalian cells.
    Cancer research, 2006, Sep-15, Volume: 66, Issue:18

    Topics: Acetylation; Adaptor Proteins, Signal Transducing; Animals; Carrier Proteins; Cell Hypoxia; Cell Line, Tumor; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Histones; Humans; Lung Neoplasms; Lysine; Methylation; Mice; MutL Protein Homolog 1; Nuclear Proteins; Promoter Regions, Genetic; Protein Methyltransferases; Protein Processing, Post-Translational; Tetrahydrofolate Dehydrogenase; Transfection

2006
Arginine methylation in a beta-hairpin peptide: implications for Arg-pi interactions, DeltaCp(o), and the cold denatured state.
    Journal of the American Chemical Society, 2006, Oct-04, Volume: 128, Issue:39

    Topics: Amino Acid Sequence; Arginine; Cold Temperature; Lysine; Methylation; Models, Molecular; Nuclear Magnetic Resonance, Biomolecular; Peptides; Protein Conformation; Protein Denaturation; Protein Folding; Static Electricity; Thermodynamics; Tryptophan

2006
A novel SET domain methyltransferase in yeast: Rkm2-dependent trimethylation of ribosomal protein L12ab at lysine 10.
    The Journal of biological chemistry, 2006, Nov-24, Volume: 281, Issue:47

    Topics: Chromatography, Liquid; DNA Methylation; Genotype; Histone-Lysine N-Methyltransferase; Lysine; Mass Spectrometry; Methylation; Methyltransferases; Peptides; Polyribosomes; Protein Structure, Tertiary; Ribosomal Proteins; Ribosomes; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins

2006
The Arabidopsis SUVR4 protein is a nucleolar histone methyltransferase with preference for monomethylated H3K9.
    Nucleic acids research, 2006, Volume: 34, Issue:19

    Topics: Alternative Splicing; Amino Acid Sequence; Arabidopsis; Arabidopsis Proteins; Cell Nucleolus; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Histones; Lysine; Methylation; Molecular Sequence Data; Protein Methyltransferases; Protein Sorting Signals; Protein Structure, Tertiary; Sequence Alignment; Substrate Specificity

2006
Effect of 2MEGA labeling on membrane proteome analysis using LC-ESI QTOF MS.
    Journal of proteome research, 2006, Volume: 5, Issue:10

    Topics: Amino Acid Sequence; Cell Membrane; Chromatography, Liquid; Databases, Protein; Escherichia coli; Escherichia coli Proteins; Guanidine; Lysine; Membrane Proteins; Methylation; Molecular Sequence Data; Peptides; Proteome; Sequence Analysis, Protein; Spectrometry, Mass, Electrospray Ionization

2006
Profile of histone lysine methylation across transcribed mammalian chromatin.
    Molecular and cellular biology, 2006, Volume: 26, Issue:24

    Topics: Chromatin; HeLa Cells; Histones; Humans; Lysine; Methylation; Methyltransferases; Poly(A)-Binding Protein I; Transcription, Genetic

2006
Mass spectrometric mapping of linker histone H1 variants reveals multiple acetylations, methylations, and phosphorylation as well as differences between cell culture and tissue.
    Molecular & cellular proteomics : MCP, 2007, Volume: 6, Issue:1

    Topics: Acetylation; Amino Acid Sequence; Animals; Chromatography, Liquid; HeLa Cells; Histones; Humans; Lysine; Mass Spectrometry; Methylation; Mice; Mice, Inbred C57BL; Molecular Sequence Data; Peptide Mapping; Peptides; Phosphorylation; Protein Processing, Post-Translational; Ubiquitin

2007
Methylation of histone H3 at Lys4 differs between paternal and maternal chromosomes in Sciara ocellaris germline development.
    Journal of cell science, 2006, Nov-15, Volume: 119, Issue:Pt 22

    Topics: Acetylation; Animals; Cell Nucleus; Chromatin Assembly and Disassembly; Diptera; DNA Polymerase II; Embryo, Nonmammalian; Female; Genomic Imprinting; Germ Cells; Histones; Lysine; Male; Methylation; Phosphorylation; Pupa; X Chromosome

2006
Induction of progesterone target genes requires activation of Erk and Msk kinases and phosphorylation of histone H3.
    Molecular cell, 2006, Nov-03, Volume: 24, Issue:3

    Topics: Animals; Cell-Free System; Chromatin Assembly and Disassembly; Chromosomal Proteins, Non-Histone; Enzyme Activation; Enzyme Inhibitors; Histones; Lysine; Mammary Tumor Virus, Mouse; Methylation; Mice; Mitogen-Activated Protein Kinase 1; Mitogen-Activated Protein Kinase 3; Nucleosomes; Phosphorylation; Progestins; Promoter Regions, Genetic; Protein Binding; Receptors, Progesterone; Ribosomal Protein S6 Kinases, 90-kDa; RNA Polymerase II; Serine; Substrate Specificity; Transcription Factors; Tumor Cells, Cultured

2006
Ctk complex-mediated regulation of histone methylation by COMPASS.
    Molecular and cellular biology, 2007, Volume: 27, Issue:2

    Topics: Chromatin Immunoprecipitation; Cyclin-Dependent Kinases; DNA Polymerase II; Histone-Lysine N-Methyltransferase; Histones; Lysine; Methylation; Phosphorylation; Protein Kinases; Proteome; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins

2007
Lysine methylation as a routine rescue strategy for protein crystallization.
    Structure (London, England : 1993), 2006, Volume: 14, Issue:11

    Topics: Bacillus anthracis; Biochemistry; Cohort Studies; Computational Biology; Crystallization; Crystallography, X-Ray; Flavivirus; Humans; Lysine; Methylation; Models, Molecular; Murine hepatitis virus; Protein Conformation; Proteins

2006
Isolation and characterization of histone H3 lysine 4 demethylase-containing complexes.
    Methods (San Diego, Calif.), 2006, Volume: 40, Issue:4

    Topics: Cell Line; Chromatography, Affinity; Histones; Humans; Lysine; Methylation; Methyltransferases; Multiprotein Complexes; Oxidoreductases, N-Demethylating; Transfection

2006
Methods to identify and functionally analyze factors that specifically recognize histone lysine methylation.
    Methods (San Diego, Calif.), 2006, Volume: 40, Issue:4

    Topics: Affinity Labels; Animals; Chromatography, Affinity; DNA-Binding Proteins; Gene Expression Regulation; Histones; Lysine; Methylation; Recombinant Proteins; Transcription, Genetic; Xenopus

2006
HP1 binding to chromatin methylated at H3K9 is enhanced by auxiliary factors.
    Molecular and cellular biology, 2007, Volume: 27, Issue:2

    Topics: Animals; Chromatin Assembly and Disassembly; Chromobox Protein Homolog 5; Chromosomal Proteins, Non-Histone; Drosophila; Drosophila Proteins; Heterochromatin; Histones; Lysine; Methylation; Protein Binding; Recombinant Proteins; Repressor Proteins; Transcription Factors

2007
Role of DNA methylation and histone H3 lysine 27 methylation in tissue-specific imprinting of mouse Grb10.
    Molecular and cellular biology, 2007, Volume: 27, Issue:2

    Topics: Animals; Brain; Cell Differentiation; Cells, Cultured; Chromatin Assembly and Disassembly; Crosses, Genetic; DNA Methylation; Epigenesis, Genetic; Genomic Imprinting; GRB10 Adaptor Protein; Histones; Lysine; Methylation; Mice; Neuroglia; Neurons; Polycomb-Group Proteins; Promoter Regions, Genetic; Repressor Proteins

2007
Repression of p53 activity by Smyd2-mediated methylation.
    Nature, 2006, Nov-30, Volume: 444, Issue:7119

    Topics: Animals; Cell Line; Gene Expression Regulation; Histone-Lysine N-Methyltransferase; Humans; Lysine; Methylation; Mice; Tumor Suppressor Protein p53

2006
Structure of human MRG15 chromo domain and its binding to Lys36-methylated histone H3.
    Nucleic acids research, 2006, Volume: 34, Issue:22

    Topics: Amino Acid Sequence; Binding Sites; Crystallography, X-Ray; Histones; Humans; Lysine; Methylation; Models, Molecular; Molecular Sequence Data; Protein Structure, Tertiary; Transcription Factors

2006
Formation of epsilon-formyllysine on silver-stained proteins: implications for assignment of isobaric dimethylation sites by tandem mass spectrometry.
    Molecular & cellular proteomics : MCP, 2007, Volume: 6, Issue:2

    Topics: Amino Acid Sequence; Binding Sites; Formates; Lysine; Methylation; Molecular Sequence Data; Peptides; Proteins; Silver Staining; Tandem Mass Spectrometry

2007
Proteome-wide analysis in Saccharomyces cerevisiae identifies several PHD fingers as novel direct and selective binding modules of histone H3 methylated at either lysine 4 or lysine 36.
    The Journal of biological chemistry, 2007, Jan-26, Volume: 282, Issue:4

    Topics: Amino Acid Motifs; Amino Acid Sequence; DNA-Binding Proteins; Histones; Homeodomain Proteins; Lysine; Methylation; Molecular Sequence Data; Protein Binding; Protein Structure, Tertiary; Proteome; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins

2007
Coordinated recruitment of histone methyltransferase G9a and other chromatin-modifying enzymes in SHP-mediated regulation of hepatic bile acid metabolism.
    Molecular and cellular biology, 2007, Volume: 27, Issue:4

    Topics: Acetylation; Amino Acid Sequence; Animals; Chlorocebus aethiops; Cholesterol 7-alpha-Hydroxylase; Cholic Acid; Chromatin; COS Cells; Gene Expression Regulation; Histone Deacetylase Inhibitors; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Histones; Humans; Hydroxamic Acids; Liver; Lysine; Male; Methylation; Mice; Molecular Sequence Data; Promoter Regions, Genetic; Protein Binding; Protein Methyltransferases; Protein Transport; Receptors, Cytoplasmic and Nuclear; Steroid 12-alpha-Hydroxylase; Transcription, Genetic

2007
Distinctive signatures of histone methylation in transcribed coding and noncoding human beta-globin sequences.
    Molecular and cellular biology, 2007, Volume: 27, Issue:4

    Topics: Acetylation; Base Sequence; Chromatin; Deoxyribonuclease I; DNA, Intergenic; Epigenesis, Genetic; Globins; Histones; Humans; K562 Cells; Lysine; Methylation; Open Reading Frames; Protein Structure, Tertiary; RNA Polymerase II; RNA, Messenger; Transcription, Genetic

2007
Chromatin remodeling at the Th2 cytokine gene loci in human type 2 helper T cells.
    Molecular immunology, 2007, Volume: 44, Issue:9

    Topics: Acetylation; Chromatin Assembly and Disassembly; Cytokines; Histones; Humans; Interleukin-5; Lysine; Methylation; RNA, Messenger; Th1 Cells; Th2 Cells; Transcription Factors

2007
Histone H3 lysine 36 methylation antagonizes silencing in Saccharomyces cerevisiae independently of the Rpd3S histone deacetylase complex.
    Genetics, 2007, Volume: 175, Issue:2

    Topics: Euchromatin; Gene Silencing; Genes, Dominant; Genes, Mating Type, Fungal; Genetic Testing; Histone Deacetylases; Histone-Lysine N-Methyltransferase; Histones; Lysine; Methylation; Methyltransferases; Nuclear Proteins; Point Mutation; Protein Binding; Regulatory Sequences, Nucleic Acid; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins; Silent Information Regulator Proteins, Saccharomyces cerevisiae; Telomere

2007
Identification of histone H3 lysine 36 acetylation as a highly conserved histone modification.
    The Journal of biological chemistry, 2007, Mar-09, Volume: 282, Issue:10

    Topics: Acetylation; Amino Acid Sequence; Animals; Chromatin Immunoprecipitation; Conserved Sequence; Histone Acetyltransferases; Histones; Humans; Lysine; Methylation; Mice; Molecular Sequence Data; Promoter Regions, Genetic; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins; Tetrahymena

2007
Structural basis for the methylation state-specific recognition of histone H4-K20 by 53BP1 and Crb2 in DNA repair.
    Cell, 2006, Dec-29, Volume: 127, Issue:7

    Topics: Amino Acid Sequence; Binding Sites; Carrier Proteins; Chromatin; Conserved Sequence; Crystallography, X-Ray; DNA Breaks, Double-Stranded; DNA Repair; Histones; Humans; Intracellular Signaling Peptides and Proteins; Lysine; Magnetic Resonance Spectroscopy; Membrane Proteins; Methylation; Molecular Sequence Data; Mutation; Phosphoproteins; Protein Structure, Tertiary; Tandem Repeat Sequences; Tumor Suppressor p53-Binding Protein 1

2006
Polycomb-mediated methylation on Lys27 of histone H3 pre-marks genes for de novo methylation in cancer.
    Nature genetics, 2007, Volume: 39, Issue:2

    Topics: Caco-2 Cells; Carrier Proteins; Cells, Cultured; Colonic Neoplasms; CpG Islands; DNA Methylation; Epigenesis, Genetic; Histones; Humans; Lysine; Methylation; Methyltransferases; Neoplasms; Viral Envelope Proteins

2007
Lysine trimethylation of retinoic acid receptor-alpha: a novel means to regulate receptor function.
    Molecular & cellular proteomics : MCP, 2007, Volume: 6, Issue:4

    Topics: Amino Acid Sequence; Amino Acid Substitution; Animals; Base Sequence; Binding Sites; Cell Line; Chlorocebus aethiops; COS Cells; DNA Primers; In Vitro Techniques; Kinetics; Lysine; Methylation; Mice; Molecular Sequence Data; Mutagenesis, Site-Directed; Protein Processing, Post-Translational; Proteomics; Receptors, Retinoic Acid; Retinoic Acid Receptor alpha; Spectrometry, Mass, Electrospray Ionization; Spodoptera; Tandem Mass Spectrometry; Two-Hybrid System Techniques

2007
Diversity within the JMJD2 histone demethylase family.
    Biochemical and biophysical research communications, 2007, Feb-23, Volume: 353, Issue:4

    Topics: Blotting, Western; Cell Line; Dimerization; DNA-Binding Proteins; Fluorescent Antibody Technique; Gene Expression Regulation; Histone-Lysine N-Methyltransferase; Histones; Humans; Isoenzymes; Jumonji Domain-Containing Histone Demethylases; Luciferases; Lysine; Matrix Metalloproteinase 1; Methylation; Oxidoreductases, N-Demethylating; Promoter Regions, Genetic; Recombinant Fusion Proteins; Telomerase; Transcription Factors; Transcription, Genetic

2007
The N terminus of Drosophila ESC binds directly to histone H3 and is required for E(Z)-dependent trimethylation of H3 lysine 27.
    Molecular and cellular biology, 2007, Volume: 27, Issue:6

    Topics: Animals; Cattle; Cell Line; Drosophila melanogaster; Drosophila Proteins; Gene Deletion; Histone-Lysine N-Methyltransferase; Histones; Lysine; Methylation; Nuclear Proteins; Polycomb Repressive Complex 1; Polycomb Repressive Complex 2; Protein Binding; Repressor Proteins; Substrate Specificity

2007
Linker histone HIS-24 (H1.1) cytoplasmic retention promotes germ line development and influences histone H3 methylation in Caenorhabditis elegans.
    Molecular and cellular biology, 2007, Volume: 27, Issue:6

    Topics: Active Transport, Cell Nucleus; Alleles; Animals; Caenorhabditis elegans; Cell Differentiation; Cell Nucleus; Cell Proliferation; Cytoplasm; Fertilization; Genetic Variation; Germ Cells; Gonads; Histidine; Histones; Lysine; Methylation; Mutation; RNA Interference; Time Factors; Transgenes

2007
Aberrant monomethylation of histone H4 lysine 20 activates the DNA damage checkpoint in Drosophila melanogaster.
    The Journal of cell biology, 2007, Jan-15, Volume: 176, Issue:2

    Topics: Anaphase-Promoting Complex-Cyclosome; Animals; Apc3 Subunit, Anaphase-Promoting Complex-Cyclosome; Brain; Cell Cycle; Cell Cycle Proteins; Checkpoint Kinase 1; Chromosome Aberrations; Cyclin B; DNA Breaks, Double-Stranded; DNA Damage; Down-Regulation; Drosophila melanogaster; Drosophila Proteins; Histone-Lysine N-Methyltransferase; Histones; Lysine; Methylation; Mitosis; Mutation; Neurons; Protein Kinases; Protein Serine-Threonine Kinases; Ubiquitin-Protein Ligase Complexes

2007
Free and chromatin-associated mono-, di-, and trimethylation of histone H4-lysine 20 during development and cell cycle progression.
    Developmental biology, 2007, Apr-01, Volume: 304, Issue:1

    Topics: Animals; Blotting, Western; Cell Cycle; Cell Fractionation; Chromatin Assembly and Disassembly; Drosophila; Embryonic Development; HeLa Cells; Histones; Humans; Lysine; Methylation; Microscopy, Fluorescence

2007
Methylation of histone H3 lysine-79 by Dot1p plays multiple roles in the response to UV damage in Saccharomyces cerevisiae.
    DNA repair, 2007, Mar-01, Volume: 6, Issue:3

    Topics: Adenosine Triphosphatases; Cell Cycle Proteins; DNA; DNA Damage; DNA Helicases; DNA Repair; DNA Replication; Dose-Response Relationship, Radiation; Histone-Lysine N-Methyltransferase; Histones; Lysine; Methylation; Nuclear Proteins; Radiation, Ionizing; Recombination, Genetic; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins; Ultraviolet Rays

2007
Tudor hooks up with DNA repair.
    Nature structural & molecular biology, 2007, Volume: 14, Issue:2

    Topics: Animals; Cell Cycle Proteins; Crystallography, X-Ray; DNA Breaks, Double-Stranded; DNA Repair; Histones; Humans; Intracellular Signaling Peptides and Proteins; Lysine; Methylation; Mice; Nuclear Proteins; Protein Binding; Protein Conformation; Protein Structure, Tertiary; Protein Transport; Schizosaccharomyces pombe Proteins; Tumor Suppressor p53-Binding Protein 1

2007
Reversal of H3K9me2 by a small-molecule inhibitor for the G9a histone methyltransferase.
    Molecular cell, 2007, Feb-09, Volume: 25, Issue:3

    Topics: Animals; Azepines; Cell Line; Enzyme Inhibitors; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation; Mice; Promoter Regions, Genetic; Protein Methyltransferases; Quinazolines

2007
Demethylation of trimethylated histone H3 Lys4 in vivo by JARID1 JmjC proteins.
    Nature structural & molecular biology, 2007, Volume: 14, Issue:3

    Topics: Animals; DNA-Binding Proteins; Genetic Testing; HeLa Cells; Histone-Lysine N-Methyltransferase; Histones; Humans; Jumonji Domain-Containing Histone Demethylases; Lysine; Methylation; Mice; Mutant Proteins; Neoplasm Proteins; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins

2007
Epigenetic reprogramming of OCT4 and NANOG regulatory regions by embryonal carcinoma cell extract.
    Molecular biology of the cell, 2007, Volume: 18, Issue:5

    Topics: Acetylation; Carcinoma, Embryonal; Cell Line; Chromatin Assembly and Disassembly; DNA Methylation; DNA-Binding Proteins; Epigenesis, Genetic; Histones; Homeodomain Proteins; Humans; In Vitro Techniques; Lysine; Methylation; Nanog Homeobox Protein; Octamer Transcription Factor-3; Promoter Regions, Genetic; Protein Processing, Post-Translational; Regulatory Sequences, Nucleic Acid; Tretinoin; Tumor Cells, Cultured; Up-Regulation

2007
The X-linked mental retardation gene SMCX/JARID1C defines a family of histone H3 lysine 4 demethylases.
    Cell, 2007, Mar-23, Volume: 128, Issue:6

    Topics: Animals; Cell Line, Tumor; Cell Survival; DNA-Binding Proteins; DNA, Complementary; Gene Library; Histone Demethylases; Histone-Lysine N-Methyltransferase; Histones; Humans; Intracellular Signaling Peptides and Proteins; Jumonji Domain-Containing Histone Demethylases; Lysine; Mental Retardation, X-Linked; Methylation; Mice; Minor Histocompatibility Antigens; Neoplasm Proteins; Neurons; Oxidoreductases, N-Demethylating; Proteins; Retinoblastoma-Binding Protein 2; Tumor Suppressor Proteins

2007
RBP2 belongs to a family of demethylases, specific for tri-and dimethylated lysine 4 on histone 3.
    Cell, 2007, Mar-23, Volume: 128, Issue:6

    Topics: Amino Acid Sequence; Animals; Caenorhabditis elegans; Caenorhabditis elegans Proteins; Carrier Proteins; DNA-Binding Proteins; Drosophila melanogaster; Embryonic Stem Cells; Gene Deletion; Genes, Homeobox; Histone Demethylases; Histones; Humans; Intracellular Signaling Peptides and Proteins; Jumonji Domain-Containing Histone Demethylases; Lysine; Methylation; Mice; Molecular Sequence Data; Nuclear Proteins; Oxidoreductases, N-Demethylating; Phylogeny; Protein Structure, Tertiary; Proteins; Repressor Proteins; Retinoblastoma-Binding Protein 2; Schizosaccharomyces; Sequence Alignment; Tumor Suppressor Proteins

2007
Epigenetic regulation of facultative heterochromatinisation in Planococcus citri via the Me(3)K9H3-HP1-Me(3)K20H4 pathway.
    Journal of cell science, 2007, Mar-15, Volume: 120, Issue:Pt 6

    Topics: Animals; Chromosome Aberrations; Embryo, Nonmammalian; Epigenesis, Genetic; Genomic Imprinting; Hemiptera; Heterochromatin; Histones; Insect Proteins; Lysine; Male; Metaphase; Methylation; Nuclear Proteins; RNA, Double-Stranded; Signal Transduction

2007
Aldosterone-induced Sgk1 relieves Dot1a-Af9-mediated transcriptional repression of epithelial Na+ channel alpha.
    The Journal of clinical investigation, 2007, Volume: 117, Issue:3

    Topics: Aldosterone; Animals; Cells, Cultured; Down-Regulation; Epithelial Sodium Channels; Female; Gene Expression Regulation; Histone-Lysine N-Methyltransferase; Histones; Immediate-Early Proteins; Kidney Tubules, Collecting; Lysine; Methylation; Methyltransferases; Mice; Mice, Knockout; Mutation; Nuclear Proteins; Phosphorylation; Promoter Regions, Genetic; Protein Serine-Threonine Kinases; Protein Transport; RNA, Messenger; Serine; Sodium Chloride; Transcription, Genetic

2007
Coordinated change of a ratio of methylated H3-lysine 4 or acetylated H3 to acetylated H4 and DNA methylation is associated with tissue-specific gene expression in cloned pig.
    Experimental & molecular medicine, 2007, Feb-28, Volume: 39, Issue:1

    Topics: Acetylation; Animals; Animals, Genetically Modified; Cells, Cultured; DNA Methylation; Ear; Fibroblasts; Gene Expression; Gene Silencing; Histone Deacetylases; Histones; Lysine; Methylation; Organ Specificity; Swine; Transgenes

2007
Kinetic manifestation of processivity during multiple methylations catalyzed by SET domain protein methyltransferases.
    Biochemistry, 2007, Mar-27, Volume: 46, Issue:12

    Topics: Adenosine; Animals; Catalysis; Cattle; Cell Cycle Proteins; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Kinetics; Lysine; Methylation; Methyltransferases; Models, Chemical; Multienzyme Complexes; Pisum sativum; Plant Proteins; Protein Methyltransferases; Protein Structure, Tertiary; S-Adenosylhomocysteine; Schizosaccharomyces pombe Proteins

2007
Genome-wide analysis of histone lysine methylation variations caused by diabetic conditions in human monocytes.
    The Journal of biological chemistry, 2007, May-04, Volume: 282, Issue:18

    Topics: Cell Line; CpG Islands; Diabetes Mellitus; Gene Expression Profiling; Gene Expression Regulation; Genome, Human; Glucose; Histones; Humans; Lysine; Methylation; Monocytes; Oligonucleotide Array Sequence Analysis; Protein Array Analysis; Protein Processing, Post-Translational; RNA, Messenger; Sweetening Agents

2007
The polycomb group protein Suz12 is required for embryonic stem cell differentiation.
    Molecular and cellular biology, 2007, Volume: 27, Issue:10

    Topics: Animals; Cell Differentiation; Cells, Cultured; Chromatin Immunoprecipitation; DNA-Binding Proteins; Embryonic Stem Cells; Gene Expression Regulation, Developmental; Histones; Homeodomain Proteins; Lysine; Methylation; Mice; Mice, Knockout; Multiprotein Complexes; Nanog Homeobox Protein; Neurons; Octamer Transcription Factor-3; Polycomb Repressive Complex 2; Promoter Regions, Genetic; Repressor Proteins; Transcription, Genetic

2007
The site-specific installation of methyl-lysine analogs into recombinant histones.
    Cell, 2007, Mar-09, Volume: 128, Issue:5

    Topics: Animals; Cysteine; Histones; Lysine; Methylation; Models, Molecular; Nucleosomes; Recombinant Proteins; Xenopus Proteins

2007
The trithorax-group gene in Drosophila little imaginal discs encodes a trimethylated histone H3 Lys4 demethylase.
    Nature structural & molecular biology, 2007, Volume: 14, Issue:4

    Topics: Animals; Chromosomes; DNA-Binding Proteins; Drosophila melanogaster; Drosophila Proteins; Histone Demethylases; Histone-Lysine N-Methyltransferase; Histones; Larva; Lysine; Methylation; Protein Binding; RNA Interference; Sequence Homology, Amino Acid; Transcription Factors

2007
The trithorax-group protein Lid is a histone H3 trimethyl-Lys4 demethylase.
    Nature structural & molecular biology, 2007, Volume: 14, Issue:4

    Topics: Animals; DNA-Binding Proteins; Drosophila melanogaster; Drosophila Proteins; Histone Demethylases; Histone-Lysine N-Methyltransferase; Histones; Larva; Lysine; Methylation; Mutant Proteins; Protein Structure, Tertiary; Protein Transport; RNA Polymerase II; Substrate Specificity; Transcription Factors

2007
trans-2-Phenylcyclopropylamine is a mechanism-based inactivator of the histone demethylase LSD1.
    Biochemistry, 2007, Apr-10, Volume: 46, Issue:14

    Topics: Amino Acid Sequence; Catalytic Domain; Enzyme Inhibitors; Escherichia coli; Flavins; Histone Demethylases; Humans; Hydrogen-Ion Concentration; Kinetics; Lysine; Mass Spectrometry; Methylation; Models, Biological; Molecular Sequence Data; Molecular Structure; Monoamine Oxidase Inhibitors; Oxidoreductases, N-Demethylating; Protein Structure, Tertiary; Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization; Temperature; Tranylcypromine

2007
Identification of histone demethylases in Saccharomyces cerevisiae.
    The Journal of biological chemistry, 2007, May-11, Volume: 282, Issue:19

    Topics: Acetylation; Amino Acid Sequence; Genetic Complementation Test; Histone Demethylases; Histone-Lysine N-Methyltransferase; Histones; Jumonji Domain-Containing Histone Demethylases; Lysine; Mass Spectrometry; Methylation; Molecular Sequence Data; Mutagenesis, Site-Directed; Oxidoreductases, N-Demethylating; Phenotype; Repressor Proteins; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins; Sequence Homology, Amino Acid

2007
Demethylation of histone H3K36 and H3K9 by Rph1: a vestige of an H3K9 methylation system in Saccharomyces cerevisiae?
    Molecular and cellular biology, 2007, Volume: 27, Issue:11

    Topics: Histone Demethylases; Histones; Lysine; Methylation; Phenotype; Protein Structure, Tertiary; Recombinant Proteins; Repressor Proteins; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins

2007
Stability of antimicrobial decapeptide (KSL) and its analogues for delivery in the oral cavity.
    Pharmaceutical research, 2007, Volume: 24, Issue:8

    Topics: Administration, Oral; Amino Acid Sequence; Antimicrobial Cationic Peptides; Bacteria; Chewing Gum; Chromatography, High Pressure Liquid; Dental Plaque; Depsipeptides; Drug Stability; Gastric Juice; Humans; Kinetics; Lysine; Mass Spectrometry; Methylation; Microbial Sensitivity Tests; Saliva

2007
Ab initio quantum mechanical/molecular mechanical molecular dynamics simulation of enzyme catalysis: the case of histone lysine methyltransferase SET7/9.
    The journal of physical chemistry. B, 2007, Apr-12, Volume: 111, Issue:14

    Topics: Catalysis; Computer Simulation; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Histones; Hydrogen Bonding; Lysine; Methylation; Models, Chemical; Models, Molecular; Protein Methyltransferases; Quantum Theory; Solutions; Structure-Activity Relationship; Thermodynamics

2007
Regulation of histone H3K4 tri-methylation and PAF complex recruitment by the Ccr4-Not complex.
    Nucleic acids research, 2007, Volume: 35, Issue:7

    Topics: Cyclin-Dependent Kinases; Cyclins; DNA-Binding Proteins; DNA-Directed RNA Polymerases; Gene Deletion; Gene Expression Regulation, Fungal; Histone-Lysine N-Methyltransferase; Histones; Lysine; Methylation; Nuclear Proteins; Repressor Proteins; Ribonucleases; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins; Transcription Factors; Ubiquitin; Ubiquitin-Protein Ligases

2007
Effects of chain length and N-methylation on a cation-pi interaction in a beta-hairpin peptide.
    Chemistry (Weinheim an der Bergstrasse, Germany), 2007, Volume: 13, Issue:20

    Topics: Amino Acid Motifs; Aminobutyrates; Cations; Hydrogen-Ion Concentration; Lysine; Magnetic Resonance Spectroscopy; Methylation; Models, Molecular; Molecular Structure; Ornithine; Peptides; Thermodynamics

2007
Whole-genome analysis of histone H3 lysine 27 trimethylation in Arabidopsis.
    PLoS biology, 2007, Volume: 5, Issue:5

    Topics: Amino Acid Sequence; Arabidopsis; Gene Silencing; Genes, Plant; Genome, Plant; Histone-Lysine N-Methyltransferase; Histones; Lysine; Methylation

2007
The role of histone ubiquitylation and deubiquitylation in gene expression as determined by the analysis of an HTB1(K123R) Saccharomyces cerevisiae strain.
    Molecular genetics and genomics : MGG, 2007, Volume: 277, Issue:5

    Topics: Amino Acid Substitution; Amino Acid Transport Systems; Arginine; Endopeptidases; Gene Expression Regulation, Fungal; Histone-Lysine N-Methyltransferase; Histones; Lysine; Membrane Glycoproteins; Methylation; Mutation; Nuclear Proteins; Oligonucleotide Array Sequence Analysis; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins; Transcription Factors; Ubiquitin

2007
Mimicking methylated histones.
    ACS chemical biology, 2007, Apr-24, Volume: 2, Issue:4

    Topics: Amino Acid Sequence; Histones; Lysine; Methylation

2007
Mass spectrometric analysis of high-mobility group proteins and their post-translational modifications in normal and cancerous human breast tissues.
    Journal of proteome research, 2007, Volume: 6, Issue:6

    Topics: Amino Acid Sequence; Breast; Breast Neoplasms; Female; HMGA1a Protein; HMGA1b Protein; Humans; Lysine; Methylation; Molecular Sequence Data; Protein Processing, Post-Translational; Serine; Tandem Mass Spectrometry

2007
The Saccharomyces cerevisiae histone demethylase Jhd1 fine-tunes the distribution of H3K36me2.
    Molecular and cellular biology, 2007, Volume: 27, Issue:13

    Topics: Amino Acid Sequence; Gene Deletion; HeLa Cells; Histones; Humans; Iron; Jumonji Domain-Containing Histone Demethylases; Ketoglutaric Acids; Lysine; Methylation; Molecular Sequence Data; Open Reading Frames; Oxidoreductases, N-Demethylating; Phenotype; Protein Binding; Protein Structure, Tertiary; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins

2007
PTIP associates with MLL3- and MLL4-containing histone H3 lysine 4 methyltransferase complex.
    The Journal of biological chemistry, 2007, Jul-13, Volume: 282, Issue:28

    Topics: Animals; Carrier Proteins; Cell Line, Transformed; DNA Damage; DNA-Binding Proteins; HeLa Cells; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation; Mice; Mice, Knockout; Multiprotein Complexes; Nuclear Proteins; Protein Methyltransferases; Protein Processing, Post-Translational

2007
Mechanism of histone methylation catalyzed by protein lysine methyltransferase SET7/9 and origin of product specificity.
    Proceedings of the National Academy of Sciences of the United States of America, 2007, May-22, Volume: 104, Issue:21

    Topics: Binding Sites; Catalysis; Computer Simulation; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Histones; Lysine; Methylation; Models, Molecular; Mutation; Protein Binding; Protein Methyltransferases; Protein Structure, Tertiary; Protons; Sensitivity and Specificity; Substrate Specificity; Tyrosine

2007
Diverse histone modifications on histone 3 lysine 9 and their relation to DNA methylation in specifying gene silencing.
    BMC genomics, 2007, May-24, Volume: 8

    Topics: Acetylation; Animals; Azacitidine; Cell Line, Tumor; Chromatin Immunoprecipitation; CpG Islands; Decitabine; DNA Methylation; DNA Modification Methylases; Gene Expression Regulation; Gene Silencing; Histones; Hydroxamic Acids; Leukemia L1210; Lysine; Methylation; Mice; Mice, Inbred DBA; Oligonucleotide Array Sequence Analysis; Protein Processing, Post-Translational

2007
Two Saccharomyces cerevisiae JmjC domain proteins demethylate histone H3 Lys36 in transcribed regions to promote elongation.
    The Journal of biological chemistry, 2007, Jul-20, Volume: 282, Issue:29

    Topics: Catalysis; Chromatin; Chromatin Immunoprecipitation; DNA Methylation; Histone Demethylases; Histones; Jumonji Domain-Containing Histone Demethylases; Lysine; Methylation; Oxidoreductases, N-Demethylating; Protein Binding; Protein Structure, Tertiary; Repressor Proteins; RNA Polymerase II; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins; Transcription, Genetic

2007
Arabidopsis TFL2/LHP1 specifically associates with genes marked by trimethylation of histone H3 lysine 27.
    PLoS genetics, 2007, Volume: 3, Issue:6

    Topics: Arabidopsis; Arabidopsis Proteins; Chromosomal Proteins, Non-Histone; Euchromatin; Gene Expression Regulation, Plant; Genes, Plant; Histones; Lysine; Methylation; Molecular Sequence Data; Polycomb-Group Proteins; Repressor Proteins

2007
H2B-K123 ubiquitination stimulates RNAPII elongation independent of H3-K4 methylation.
    Biochemical and biophysical research communications, 2007, Jul-27, Volume: 359, Issue:2

    Topics: Chromatin Immunoprecipitation; Epigenesis, Genetic; Gene Expression Regulation; Histones; Kinetics; Lysine; Methylation; Models, Biological; Models, Genetic; RNA Polymerase II; Saccharomyces cerevisiae; Time Factors; Transcription, Genetic; Ubiquitin

2007
Trithorax-group protein ASH1 methylates histone H3 lysine 36.
    Gene, 2007, Aug-01, Volume: 397, Issue:1-2

    Topics: Amino Acid Sequence; Animals; Base Sequence; Binding Sites; DNA Primers; DNA-Binding Proteins; Drosophila; Drosophila Proteins; Genes, Insect; Histones; In Vitro Techniques; Lysine; Methylation; Mice; Mutagenesis, Site-Directed; Nucleosomes; Recombinant Proteins; Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization; Transcription Factors

2007
The induction of H3K9 methylation by PIWIL4 at the p16Ink4a locus.
    Biochemical and biophysical research communications, 2007, Aug-03, Volume: 359, Issue:3

    Topics: Argonaute Proteins; Cell Line; Cyclin-Dependent Kinase Inhibitor p16; Gene Expression Regulation; Histones; Humans; Lysine; Methylation; Proteins; RNA-Binding Proteins

2007
The fission yeast Jmj2 reverses histone H3 Lysine 4 trimethylation.
    The Journal of biological chemistry, 2007, Jul-27, Volume: 282, Issue:30

    Topics: Gene Deletion; Genome, Fungal; Histones; Lysine; Methylation; Oligonucleotide Array Sequence Analysis; Polymerase Chain Reaction; Promoter Regions, Genetic; Recombinant Proteins; Schizosaccharomyces; Schizosaccharomyces pombe Proteins; Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization

2007
The triploid endosperm genome of Arabidopsis adopts a peculiar, parental-dosage-dependent chromatin organization.
    The Plant cell, 2007, Volume: 19, Issue:6

    Topics: Arabidopsis; Centromere; Chromatin; Chromosomes, Plant; DNA, Ribosomal; Gene Dosage; Genome, Plant; Heterochromatin; Histones; Lysine; Meristem; Methylation; Models, Genetic; Plant Leaves; Polyploidy; Seeds

2007
Drosophila dSet2 functions in H3-K36 methylation and is required for development.
    Biochemical and biophysical research communications, 2007, Aug-03, Volume: 359, Issue:3

    Topics: Animals; Drosophila melanogaster; Drosophila Proteins; Gene Expression Regulation, Developmental; Histone-Lysine N-Methyltransferase; Histones; Lysine; Methylation; Phosphorylation; Protein Binding; Receptors, Steroid; RNA Polymerase II

2007
SET8-mediated methylations of histone H4 lysine 20 mark silent heterochromatic domains in apicomplexan genomes.
    Molecular and cellular biology, 2007, Volume: 27, Issue:16

    Topics: Amino Acid Sequence; Amino Acids; Animals; Catalysis; Catalytic Domain; Cell Cycle; Gene Silencing; Genome, Protozoan; Heterochromatin; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation; Models, Molecular; Molecular Sequence Data; Mutation; Parasites; Phylogeny; Protozoan Proteins; Toxoplasma

2007
Post-translational modifications in the rat lumbar spinal cord in experimental autoimmune encephalomyelitis.
    Journal of proteome research, 2007, Volume: 6, Issue:7

    Topics: Amino Acid Sequence; Animals; Arginine; Astrocytes; Citrulline; Encephalomyelitis, Autoimmune, Experimental; Glial Fibrillary Acidic Protein; Lumbar Vertebrae; Lysine; Methylation; Molecular Sequence Data; Multiple Sclerosis; Phosphorylation; Protein Processing, Post-Translational; Proteomics; Rats; Serine; Spinal Cord

2007
Epigenetic and genetic mechanisms contribute to telomerase inhibition by EGCG.
    Journal of cellular biochemistry, 2008, Feb-01, Volume: 103, Issue:2

    Topics: Adenocarcinoma; Apoptosis; Breast Neoplasms; Catechin; Cell Division; Cell Line, Tumor; DNA Methylation; E2F1 Transcription Factor; Epigenesis, Genetic; Female; Gene Expression Regulation, Neoplastic; Histones; HL-60 Cells; Humans; Lysine; Male; Methylation; Neoplasm Proteins; Promoter Regions, Genetic; Protein Processing, Post-Translational; RNA, Messenger; RNA, Neoplasm; Telomerase

2008
RBP2 is an MRG15 complex component and down-regulates intragenic histone H3 lysine 4 methylation.
    Genes to cells : devoted to molecular & cellular mechanisms, 2007, Volume: 12, Issue:6

    Topics: Cell Line; Down-Regulation; Gene Expression Regulation, Fungal; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation; Models, Biological; Models, Genetic; Phosphorylation; Retinol-Binding Proteins; Retinol-Binding Proteins, Cellular; Saccharomyces cerevisiae; Serine; Transcription Factors; Transcription, Genetic

2007
Recognition of trimethyllysine by a chromodomain is not driven by the hydrophobic effect.
    Proceedings of the National Academy of Sciences of the United States of America, 2007, Jul-03, Volume: 104, Issue:27

    Topics: Amino Acid Sequence; Histones; Hydrophobic and Hydrophilic Interactions; Lysine; Methylation; Molecular Sequence Data; Protein Binding; Protein Structure, Tertiary; Thermodynamics

2007
Transcriptionally active heterochromatin in rye B chromosomes.
    The Plant cell, 2007, Volume: 19, Issue:6

    Topics: Cell Nucleus; Chromosomes, Plant; DNA, Plant; Gene Expression Regulation, Plant; Genome, Plant; Heterochromatin; Histones; Interphase; Lysine; Methylation; Molecular Sequence Data; Organ Specificity; Polyadenylation; Repetitive Sequences, Nucleic Acid; Secale; Transcription, Genetic

2007
Functional dynamics of H3K9 methylation during meiotic prophase progression.
    The EMBO journal, 2007, Jul-25, Volume: 26, Issue:14

    Topics: Animals; Cell Lineage; Female; Gene Deletion; Gene Expression Regulation; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Histones; Infertility; Integrases; Jumonji Domain-Containing Histone Demethylases; Kinetics; Lysine; Male; Meiotic Prophase I; Methylation; Mice; Mice, Knockout; Ovary; Oxidoreductases, N-Demethylating; Pachytene Stage; Protein Methyltransferases; Spermatocytes; Spermatogonia

2007
Widespread, exceptionally high levels of histone H3 lysine 4 trimethylation largely mediate "privileged" gene expression.
    Gene expression, 2007, Volume: 13, Issue:4-5

    Topics: Cell Line, Tumor; Gene Expression; Gene Silencing; Histones; Humans; Keratin-8; Lysine; Methylation; Promoter Regions, Genetic; RNA, Messenger; RNA, Small Interfering

2007
Novel eye-specific calmodulin methylation characterized by protein mapping in Drosophila melanogaster.
    Proteomics, 2007, Volume: 7, Issue:15

    Topics: Amino Acid Sequence; Animals; Calmodulin; Databases, Protein; Drosophila melanogaster; Electrophoresis, Gel, Two-Dimensional; Eye; Lysine; Male; Mass Spectrometry; Methylation; Models, Molecular; Molecular Sequence Data; Molecular Weight; Peptide Mapping; Proteomics; RNA, Messenger; Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization; Trypsin

2007
(NZ)CH...O contacts assist crystallization of a ParB-like nuclease.
    BMC structural biology, 2007, Jul-07, Volume: 7

    Topics: Bacterial Proteins; Crystallography, X-Ray; Deoxyribonucleases; DNA Primase; Endodeoxyribonucleases; Escherichia coli Proteins; Exodeoxyribonucleases; Lysine; Methylation; Models, Molecular; Protein Structure, Secondary; Protein Structure, Tertiary; Pyrococcus furiosus; Thermodynamics

2007
Dynamic regulation of histone H3 methylation at lysine 4 in mammalian spermatogenesis.
    Biology of reproduction, 2007, Volume: 77, Issue:5

    Topics: Animals; Callithrix; Histone Deacetylase 1; Histone Deacetylases; Histone Demethylases; Histones; Lysine; Male; Methylation; Mice; Oxidoreductases, N-Demethylating; Spermatogenesis; Testis

2007
Polypeptide substrate specificity of PsLSMT. A set domain protein methyltransferase.
    The Journal of biological chemistry, 2007, Sep-21, Volume: 282, Issue:38

    Topics: alpha-Tocopherol; Catalysis; Histone-Lysine N-Methyltransferase; Kinetics; Lysine; Methylation; Methyltransferases; Nicotiana; Peptides; Perilla frutescens; Protein Methyltransferases; Protein Structure, Tertiary; Ribulose-Bisphosphate Carboxylase; RNA Interference; Substrate Specificity

2007
Analysis of dynamic changes in post-translational modifications of human histones during cell cycle by mass spectrometry.
    Molecular & cellular proteomics : MCP, 2007, Volume: 6, Issue:11

    Topics: Acetylation; Amino Acid Sequence; Cell Cycle; Histones; Humans; Isotope Labeling; Lysine; Mass Spectrometry; Methylation; Molecular Sequence Data; Peptides; Protein Processing, Post-Translational

2007
Methylation-acetylation interplay activates p53 in response to DNA damage.
    Molecular and cellular biology, 2007, Volume: 27, Issue:19

    Topics: Acetylation; Cell Cycle; Cell Line; Cyclin-Dependent Kinase Inhibitor p21; DNA Damage; Gene Expression Regulation; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation; Promoter Regions, Genetic; Protein Methyltransferases; Protein Processing, Post-Translational; RNA; Tumor Suppressor Protein p53

2007
Global assessment of combinatorial post-translational modification of core histones in yeast using contemporary mass spectrometry. LYS4 trimethylation correlates with degree of acetylation on the same H3 tail.
    The Journal of biological chemistry, 2007, Sep-21, Volume: 282, Issue:38

    Topics: Acetylation; Amino Acid Sequence; Chromatin; Chromatography, High Pressure Liquid; Histones; Lysine; Mass Spectrometry; Methylation; Models, Biological; Molecular Sequence Data; Protein Processing, Post-Translational; Proteomics; Saccharomyces cerevisiae; Serine Endopeptidases

2007
Expansion of chromosome territories with chromatin decompaction in BAF53-depleted interphase cells.
    Molecular biology of the cell, 2007, Volume: 18, Issue:10

    Topics: Acetylation; Actins; Animals; Cell Cycle Proteins; Chromatin; Chromosomal Proteins, Non-Histone; Chromosomes, Mammalian; DNA Helicases; DNA-Binding Proteins; Down-Regulation; Histones; Interphase; Lysine; Methylation; Mice; NIH 3T3 Cells; Nuclear Proteins; Nucleosomes; Repetitive Sequences, Nucleic Acid; Transcription Factors; Up-Regulation

2007
Retinoid regulated association of transcriptional co-regulators and the polycomb group protein SUZ12 with the retinoic acid response elements of Hoxa1, RARbeta(2), and Cyp26A1 in F9 embryonal carcinoma cells.
    Journal of molecular biology, 2007, Sep-14, Volume: 372, Issue:2

    Topics: Acetylation; Animals; Base Sequence; Cell Line, Tumor; Cytochrome P-450 Enzyme System; Gene Expression Regulation; Histone Acetyltransferases; Histones; Homeodomain Proteins; Kinetics; Lysine; Methylation; Molecular Sequence Data; Nuclear Receptor Coactivator 3; p300-CBP Transcription Factors; Polycomb-Group Proteins; Protein Binding; Receptors, Retinoic Acid; Repressor Proteins; Response Elements; Retinoic Acid 4-Hydroxylase; Retinoid X Receptors; RNA Polymerase II; RNA, Messenger; Trans-Activators; Transcription Factors; Transcription, Genetic; Tretinoin

2007
Simultaneous mutation of methylated lysine residues in histone H3 causes enhanced gene silencing, cell cycle defects, and cell lethality in Saccharomyces cerevisiae.
    Molecular and cellular biology, 2007, Volume: 27, Issue:19

    Topics: Cell Cycle; Gene Expression Profiling; Gene Expression Regulation, Fungal; Gene Silencing; Heterochromatin; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Histones; Lysine; Methylation; Mutagenesis, Site-Directed; Mutation; Nucleosomes; Phenotype; Protein Methyltransferases; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins; Silent Information Regulator Proteins, Saccharomyces cerevisiae; Telomere

2007
The JMJD2 members of histone demethylase revisited.
    Molecular biology reports, 2008, Volume: 35, Issue:4

    Topics: Amino Acid Sequence; Histones; Lysine; Methylation; Models, Molecular; Molecular Sequence Data; Oxidoreductases, N-Demethylating; Protein Conformation

2008
Targeting the JMJD2A histone lysine demethylase.
    Nature structural & molecular biology, 2007, Volume: 14, Issue:8

    Topics: Chromatin Assembly and Disassembly; Epigenesis, Genetic; Histones; Humans; Jumonji Domain-Containing Histone Demethylases; Lysine; Methylation; Oxidoreductases, N-Demethylating; Substrate Specificity

2007
The Arabidopsis LHP1 protein colocalizes with histone H3 Lys27 trimethylation.
    Nature structural & molecular biology, 2007, Volume: 14, Issue:9

    Topics: Arabidopsis; Chromosomal Proteins, Non-Histone; Histones; Lysine; Methylation

2007
Recognition of unmethylated histone H3 lysine 4 links BHC80 to LSD1-mediated gene repression.
    Nature, 2007, Aug-09, Volume: 448, Issue:7154

    Topics: Amino Acid Sequence; Chromatin; Gene Silencing; HeLa Cells; Histone Deacetylases; Histone Demethylases; Histones; Humans; Lysine; Methylation; Models, Molecular; Molecular Sequence Data; Oxidoreductases, N-Demethylating; Protein Structure, Tertiary; RNA Interference; Zinc Fingers

2007
Implications of a histone code mimic in epigenetic signaling.
    Molecular cell, 2007, Aug-17, Volume: 27, Issue:4

    Topics: Animals; Epigenesis, Genetic; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation; Mice; Molecular Mimicry; Protein Methyltransferases; Signal Transduction; Substrate Specificity

2007
Modulation of p53 function by SET8-mediated methylation at lysine 382.
    Molecular cell, 2007, Aug-17, Volume: 27, Issue:4

    Topics: Amino Acid Sequence; Antibodies; Cell Line, Tumor; DNA Damage; Histone-Lysine N-Methyltransferase; Humans; Lysine; Methylation; Models, Biological; Molecular Sequence Data; RNA Interference; Substrate Specificity; Transcriptional Activation; Tumor Suppressor Protein p53

2007
Class I histone deacetylase Thd1p promotes global chromatin condensation in Tetrahymena thermophila.
    Eukaryotic cell, 2007, Volume: 6, Issue:10

    Topics: Acetates; Acetylation; Animals; Chromatin; Chromatin Assembly and Disassembly; Food Deprivation; Histone Deacetylases; Histones; Lysine; Macronucleus; Methylation; Mutation; Phosphorylation; Tetrahymena thermophila

2007
Demethylation of H3K27 regulates polycomb recruitment and H2A ubiquitination.
    Science (New York, N.Y.), 2007, Oct-19, Volume: 318, Issue:5849

    Topics: Cell Differentiation; Cell Line; Cell Line, Tumor; DNA-Binding Proteins; Embryonic Stem Cells; Genes, Homeobox; Histone Demethylases; Histones; Humans; Lysine; Methylation; Multigene Family; Neoplasm Proteins; Nuclear Proteins; Polycomb-Group Proteins; Promoter Regions, Genetic; Protein Processing, Post-Translational; Recombinant Proteins; Repressor Proteins; Signal Transduction; Transcription, Genetic; Transcriptional Activation; Tretinoin; Ubiquitin

2007
Pcl-PRC2 is needed to generate high levels of H3-K27 trimethylation at Polycomb target genes.
    The EMBO journal, 2007, Sep-19, Volume: 26, Issue:18

    Topics: Animals; Cell Extracts; Drosophila melanogaster; Drosophila Proteins; Embryo, Nonmammalian; Genes, Insect; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Histones; Lysine; Methylation; Polycomb-Group Proteins; Protein Methyltransferases; Repressor Proteins; Substrate Specificity

2007
Dynamic reprogramming of histone acetylation and methylation in the first cell cycle of cloned mouse embryos.
    Biology of reproduction, 2007, Volume: 77, Issue:6

    Topics: Acetylation; Animals; Cell Cycle; Cloning, Organism; Embryo, Mammalian; Female; Histone Acetyltransferases; Histone Deacetylase Inhibitors; Histones; Hydroxamic Acids; Lysine; Male; Methylation; Methyltransferases; Mice; Sperm Injections, Intracytoplasmic

2007
Distinct methylation patterns in histone H3 at Lys-4 and Lys-9 correlate with up- & down-regulation of genes by ethanol in hepatocytes.
    Life sciences, 2007, Sep-01, Volume: 81, Issue:12

    Topics: Animals; Gene Expression Regulation; Hepatocytes; Histones; Immunohistochemistry; Lysine; Male; Methylation; Promoter Regions, Genetic; Rats; Rats, Sprague-Dawley

2007
Spatial distribution of histone methylation during MHC class II expression.
    Molecular immunology, 2008, Volume: 45, Issue:4

    Topics: Acetylation; Animals; B-Lymphocytes; Cell Line; Gene Expression Regulation; Histocompatibility Antigens Class II; Histone Deacetylases; Histones; Humans; Hydroxamic Acids; Interferon-gamma; Lysine; Methylation; Mice; Nuclear Proteins; Promoter Regions, Genetic; Trans-Activators

2008
A histone H3 lysine 27 demethylase regulates animal posterior development.
    Nature, 2007, Oct-11, Volume: 449, Issue:7163

    Topics: Animals; Body Patterning; Cell Line; Embryo, Nonmammalian; Gene Expression Regulation, Developmental; Genes, Homeobox; Genome; Histone Demethylases; Histones; Humans; Jumonji Domain-Containing Histone Demethylases; Lysine; Methylation; Mice; Nuclear Proteins; Oxidoreductases, N-Demethylating; Transcription, Genetic; Zebrafish; Zebrafish Proteins

2007
Histone H3 K4 demethylation during activation and attenuation of GAL1 transcription in Saccharomyces cerevisiae.
    Molecular and cellular biology, 2007, Volume: 27, Issue:22

    Topics: Animals; beta-Fructofuranosidase; DNA-Binding Proteins; Enzyme Activation; Galactokinase; Gene Expression Regulation, Fungal; Histone-Lysine N-Methyltransferase; Histones; Lysine; Methylation; Oxidoreductases, N-Demethylating; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins; Substrate Specificity; Transcription Factors; Transcription, Genetic; Transcriptional Activation

2007
The Arabidopsis homologs of trithorax (ATX1) and enhancer of zeste (CLF) establish 'bivalent chromatin marks' at the silent AGAMOUS locus.
    Nucleic acids research, 2007, Volume: 35, Issue:18

    Topics: AGAMOUS Protein, Arabidopsis; Arabidopsis; Arabidopsis Proteins; Gene Expression Regulation, Plant; Gene Silencing; Histone-Lysine N-Methyltransferase; Histones; Homeodomain Proteins; Lysine; Methylation; Mutation; Nucleosomes; Phenotype; Transcription Factors

2007
Selective anchoring of TFIID to nucleosomes by trimethylation of histone H3 lysine 4.
    Cell, 2007, Oct-05, Volume: 131, Issue:1

    Topics: Acetylation; Amino Acid Sequence; Animals; Gene Expression Regulation; HeLa Cells; Histones; Homeodomain Proteins; Humans; Lysine; Macromolecular Substances; Methylation; Mice; Molecular Sequence Data; Nucleosomes; Recombinant Fusion Proteins; RNA, Messenger; Transcription Factor TFIID; Tumor Suppressor Proteins; Zinc Fingers

2007
Methylation of histone H3R2 by PRMT6 and H3K4 by an MLL complex are mutually exclusive.
    Nature, 2007, Oct-18, Volume: 449, Issue:7164

    Topics: Animals; Arginine; Cell Line; Cell Line, Tumor; Chromatin Immunoprecipitation; DNA-Binding Proteins; Embryo, Mammalian; Epigenesis, Genetic; Gene Expression Regulation; Histone-Lysine N-Methyltransferase; Histones; Humans; Intracellular Signaling Peptides and Proteins; Lysine; Methylation; Mice; Multiprotein Complexes; Nuclear Proteins; Promoter Regions, Genetic; Protein-Arginine N-Methyltransferases; Transcription Factors

2007
Arginine methylation at histone H3R2 controls deposition of H3K4 trimethylation.
    Nature, 2007, Oct-18, Volume: 449, Issue:7164

    Topics: Arginine; Chromatin Immunoprecipitation; DNA-Binding Proteins; Euchromatin; Gene Expression Regulation, Fungal; Genes, Fungal; Genome, Fungal; Heterochromatin; Histone Deacetylases; Histone-Lysine N-Methyltransferase; Histones; Lysine; Methylation; Protein Subunits; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins; Shelterin Complex; Silent Information Regulator Proteins, Saccharomyces cerevisiae; Sirtuin 2; Sirtuins; Telomere-Binding Proteins; Transcription Factors

2007
Mammalian ASH1L is a histone methyltransferase that occupies the transcribed region of active genes.
    Molecular and cellular biology, 2007, Volume: 27, Issue:24

    Topics: Animals; Base Sequence; Chromatin; DNA-Binding Proteins; Gene Expression Regulation; Genes, Essential; HeLa Cells; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Histones; Homeodomain Proteins; Humans; K562 Cells; Lysine; Mammals; Methylation; Mice; Myeloid-Lymphoid Leukemia Protein; Protein Binding; Protein Methyltransferases; Protein Structure, Tertiary; Transcription Factors; Transcription, Genetic

2007
JMJD3 is a histone H3K27 demethylase.
    Cell research, 2007, Volume: 17, Issue:10

    Topics: Binding Sites; Blotting, Western; Databases, Factual; DNA-Binding Proteins; Glutathione Transferase; HeLa Cells; Histones; Humans; Immunohistochemistry; Jumonji Domain-Containing Histone Demethylases; Lysine; Male; Methylation; Mutation; Neoplasm Metastasis; Oxidoreductases, N-Demethylating; Prostatic Neoplasms; Recombinant Fusion Proteins; Transfection

2007
The BRCT-domain containing protein PTIP links PAX2 to a histone H3, lysine 4 methyltransferase complex.
    Developmental cell, 2007, Volume: 13, Issue:4

    Topics: Animals; Carrier Proteins; Cell Line; DNA-Binding Proteins; Epigenesis, Genetic; Gastrulation; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation; Mice; Nuclear Proteins; PAX2 Transcription Factor; Protein Binding; Protein Methyltransferases; Protein Structure, Tertiary

2007
SMRT-mediated repression of an H3K27 demethylase in progression from neural stem cell to neuron.
    Nature, 2007, Nov-15, Volume: 450, Issue:7168

    Topics: Animals; Cell Differentiation; Cell Line, Tumor; Cells, Cultured; DNA-Binding Proteins; Embryo, Mammalian; Embryonal Carcinoma Stem Cells; Histones; Humans; Jumonji Domain-Containing Histone Demethylases; Lysine; Methylation; Mice; Neurons; Nuclear Receptor Co-Repressor 2; Oxidoreductases, N-Demethylating; Rats; Repressor Proteins; Stem Cells

2007
Structural and functional analyses of methyl-lysine binding by the malignant brain tumour repeat protein Sex comb on midleg.
    EMBO reports, 2007, Volume: 8, Issue:11

    Topics: Amino Acid Sequence; Animals; Crystallography, X-Ray; DNA-Binding Proteins; Drosophila melanogaster; Drosophila Proteins; Gene Expression Regulation, Developmental; Genes, Homeobox; Histones; Lysine; Methylation; Models, Molecular; Molecular Sequence Data; Peptides; Polycomb Repressive Complex 1; Polycomb-Group Proteins; Protein Conformation; Protein Structure, Tertiary; Repressor Proteins; Sequence Alignment; Transgenes

2007
CHD8 associates with human Staf and contributes to efficient U6 RNA polymerase III transcription.
    Molecular and cellular biology, 2007, Volume: 27, Issue:24

    Topics: Amino Acid Sequence; Chromatin; DNA-Binding Proteins; HeLa Cells; Histones; Humans; Immunoprecipitation; Interferon Regulatory Factor-3; Lysine; Methylation; Molecular Sequence Data; Protein Binding; Protein Transport; RNA Polymerase III; RNA, Small Nuclear; Trans-Activators; Transcription Factors; Transcription, Genetic; Transcriptional Activation

2007
Automethylation of G9a and its implication in wider substrate specificity and HP1 binding.
    Nucleic acids research, 2007, Volume: 35, Issue:21

    Topics: Amino Acid Motifs; Amino Acid Sequence; Animals; Cell Line; Chlorocebus aethiops; Chromobox Protein Homolog 5; Chromosomal Proteins, Non-Histone; COS Cells; Histone-Lysine N-Methyltransferase; Lysine; Mass Spectrometry; Methylation; Mice; Molecular Sequence Data; Mutation; Protein Processing, Post-Translational; Substrate Specificity

2007
Certain and progressive methylation of histone H4 at lysine 20 during the cell cycle.
    Molecular and cellular biology, 2008, Volume: 28, Issue:1

    Topics: Acetylation; Cell Cycle; Gene Deletion; Gene Expression Regulation; HeLa Cells; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Mass Spectrometry; Methylation

2008
ICBP90, a novel methyl K9 H3 binding protein linking protein ubiquitination with heterochromatin formation.
    Molecular and cellular biology, 2008, Volume: 28, Issue:2

    Topics: Amino Acid Motifs; CCAAT-Enhancer-Binding Proteins; Cell Nucleus; Chromobox Protein Homolog 5; Chromosomal Proteins, Non-Histone; Gene Expression Regulation; HeLa Cells; Heterochromatin; Histones; Humans; Interphase; Lysine; Methylation; Protein Binding; RNA, Small Interfering; Signal Transduction; Ubiquitin-Protein Ligases; Ubiquitination

2008
Differentially expressed genes are marked by histone 3 lysine 9 trimethylation in human cancer cells.
    Oncogene, 2008, Apr-10, Volume: 27, Issue:17

    Topics: Cell Line, Tumor; DNA Methylation; Gene Expression Regulation, Neoplastic; Histones; Homeodomain Proteins; Humans; Lysine; Methylation; Myeloid Ecotropic Viral Integration Site 1 Protein; Neoplasm Proteins; Neoplasms; Otx Transcription Factors; Transcription, Genetic

2008
Vernalization-induced trimethylation of histone H3 lysine 27 at FLC is not maintained in mitotically quiescent cells.
    Current biology : CB, 2007, Nov-20, Volume: 17, Issue:22

    Topics: Arabidopsis; Arabidopsis Proteins; Cold Temperature; Histones; Interphase; Lysine; MADS Domain Proteins; Methylation; Plant Leaves

2007
Identification of JmjC domain-containing UTX and JMJD3 as histone H3 lysine 27 demethylases.
    Proceedings of the National Academy of Sciences of the United States of America, 2007, Nov-20, Volume: 104, Issue:47

    Topics: Animals; Catalysis; Cell Line; Chlorocebus aethiops; Gene Expression Regulation, Enzymologic; Histone Demethylases; Histones; Humans; Jumonji Domain-Containing Histone Demethylases; Lysine; Methylation; Mice; Mutation; Nuclear Proteins; Oxidoreductases, N-Demethylating; Protein Structure, Tertiary; Substrate Specificity; Transcriptional Activation

2007
Changes in H3K79 methylation during preimplantation development in mice.
    Biology of reproduction, 2008, Volume: 78, Issue:3

    Topics: Animals; Biomarkers; Cleavage Stage, Ovum; Embryonic Development; Female; Fertilization; Gene Expression Regulation, Developmental; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Histones; Lysine; Male; Meiosis; Methylation; Mice; Mice, Inbred C57BL; Mice, Inbred ICR; Protein Methyltransferases; Tissue Distribution

2008
Epigenetics: reversing the 'irreversible'.
    Nature, 2007, Nov-15, Volume: 450, Issue:7168

    Topics: Animals; Brain; Cell Differentiation; DNA-Binding Proteins; Gene Silencing; Histones; Humans; Jumonji Domain-Containing Histone Demethylases; Lysine; Methylation; Mice; Nuclear Receptor Co-Repressor 2; Oxidoreductases, N-Demethylating; Polycomb-Group Proteins; Repressor Proteins

2007
The lysine 831 of vascular endothelial growth factor receptor 1 is a novel target of methylation by SMYD3.
    Cancer research, 2007, Nov-15, Volume: 67, Issue:22

    Topics: Cell Line; Cell Line, Tumor; Cell Proliferation; DNA Methylation; Gene Expression Regulation, Neoplastic; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Humans; Lysine; Methylation; Models, Biological; Phosphorylation; Plasmids; Protein Methyltransferases; Serine; Vascular Endothelial Growth Factor Receptor-1

2007
Localized H3K36 methylation states define histone H4K16 acetylation during transcriptional elongation in Drosophila.
    The EMBO journal, 2007, Dec-12, Volume: 26, Issue:24

    Topics: Acetylation; Animals; Drosophila melanogaster; Drosophila Proteins; Gene Expression Regulation; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation; Nuclear Proteins; Oligonucleotide Array Sequence Analysis; Promoter Regions, Genetic; Protein Processing, Post-Translational; RNA Interference; Transcription, Genetic

2007
Transitional B cells lose their ability to receptor edit but retain their potential for positive and negative selection.
    Journal of immunology (Baltimore, Md. : 1950), 2007, Dec-01, Volume: 179, Issue:11

    Topics: Acetylation; Animals; Antibodies; Antigen-Antibody Reactions; Apoptosis; B-Lymphocytes; Cell Differentiation; DNA-Binding Proteins; Histones; Homeodomain Proteins; Immunoglobulin Heavy Chains; Lysine; Methylation; Mice; Mice, Knockout; Mice, Transgenic; Receptors, Antigen, B-Cell; Sensitivity and Specificity

2007
L3MBTL1 recognition of mono- and dimethylated histones.
    Nature structural & molecular biology, 2007, Volume: 14, Issue:12

    Topics: Amino Acid Sequence; Calorimetry; Chromosomal Proteins, Non-Histone; Histones; Lysine; Methylation; Models, Molecular; Molecular Sequence Data; Neoplasm Proteins; Protein Binding; Repressor Proteins; Sequence Homology, Amino Acid; Tumor Suppressor Proteins

2007
5' flanking region of var genes nucleate histone modification patterns linked to phenotypic inheritance of virulence traits in malaria parasites.
    Molecular microbiology, 2007, Volume: 66, Issue:6

    Topics: 5' Flanking Region; Animals; Base Sequence; Blotting, Western; Chromatin Immunoprecipitation; Gene Expression Regulation; Histones; Humans; Lysine; Malaria; Methylation; Molecular Sequence Data; Plasmodium falciparum; Polymerase Chain Reaction; Protozoan Proteins; Transcription, Genetic; Virulence

2007
RAG2 PHD finger couples histone H3 lysine 4 trimethylation with V(D)J recombination.
    Nature, 2007, Dec-13, Volume: 450, Issue:7172

    Topics: Amino Acid Motifs; Animals; Binding Sites; DNA-Binding Proteins; Gene Rearrangement, B-Lymphocyte; Histones; Homeodomain Proteins; Humans; Immunologic Deficiency Syndromes; Lysine; Methylation; Mice; Models, Molecular; Protein Binding; Recombination, Genetic; Structure-Activity Relationship; Substrate Specificity; Tryptophan; VDJ Recombinases

2007
In vivo analysis of Drosophila SU(Z)12 function.
    Molecular genetics and genomics : MGG, 2008, Volume: 279, Issue:2

    Topics: Animals; Animals, Genetically Modified; Chromosomal Proteins, Non-Histone; Chromosomes; Drosophila melanogaster; Drosophila Proteins; Female; Green Fluorescent Proteins; Histone-Lysine N-Methyltransferase; Histones; Immunohistochemistry; Lysine; Male; Methylation; Mutation; Polycomb Repressive Complex 1; Polycomb Repressive Complex 2; Polycomb-Group Proteins; Protein Binding; Repressor Proteins

2008
Recognition of trimethylated histone H3 lysine 4 facilitates the recruitment of transcription postinitiation factors and pre-mRNA splicing.
    Molecular cell, 2007, Nov-30, Volume: 28, Issue:4

    Topics: Chromatin; DNA Helicases; DNA-Binding Proteins; HeLa Cells; Histones; Humans; Lysine; Methylation; Models, Genetic; Peptides; Protein Binding; Ribonucleoprotein, U2 Small Nuclear; RNA Precursors; RNA Splicing; Spliceosomes; Transcription Factors; Transcription, Genetic

2007
Structural basis for lower lysine methylation state-specific readout by MBT repeats of L3MBTL1 and an engineered PHD finger.
    Molecular cell, 2007, Nov-30, Volume: 28, Issue:4

    Topics: Amino Acid Sequence; Antigens, Nuclear; Chromosomal Proteins, Non-Histone; Crystallography, X-Ray; DNA Mutational Analysis; Glutamic Acid; Histones; Humans; Kinetics; Lysine; Methylation; Models, Molecular; Molecular Sequence Data; Mutant Proteins; Neoplasm Proteins; Nerve Tissue Proteins; Peptides; Protein Engineering; Protein Structure, Tertiary; Repetitive Sequences, Amino Acid; Repressor Proteins; Structure-Activity Relationship; Transcription Factors; Tumor Suppressor Proteins; Tyrosine

2007
JARID1B is a histone H3 lysine 4 demethylase up-regulated in prostate cancer.
    Proceedings of the National Academy of Sciences of the United States of America, 2007, Dec-04, Volume: 104, Issue:49

    Topics: Cell Line, Tumor; Computational Biology; Dioxygenases; DNA-Binding Proteins; Gene Expression; Histones; Humans; Jumonji Domain-Containing Histone Demethylases; Lysine; Male; Methylation; Nuclear Proteins; Phylogeny; Prostatic Neoplasms; Protein Structure, Tertiary; Repressor Proteins; Up-Regulation

2007
Di- and tri- but not monomethylation on histone H3 lysine 36 marks active transcription of genes involved in flowering time regulation and other processes in Arabidopsis thaliana.
    Molecular and cellular biology, 2008, Volume: 28, Issue:4

    Topics: Arabidopsis; Arabidopsis Proteins; Cell Nucleus; Chromatin Immunoprecipitation; Down-Regulation; Flowers; Gene Expression Profiling; Gene Expression Regulation, Plant; Genes, Plant; Histone-Lysine N-Methyltransferase; Histones; Lysine; MADS Domain Proteins; Methylation; Mutation; Phenotype; Phylogeny; Protein Transport; Time Factors; Transcription, Genetic; Up-Regulation

2008
Dynamic histone H3 methylation during gene induction: HYPB/Setd2 mediates all H3K36 trimethylation.
    The EMBO journal, 2008, Jan-23, Volume: 27, Issue:2

    Topics: Animals; Blotting, Northern; Cell Line; Drosophila Proteins; Epidermal Growth Factor; Gene Expression Regulation; Histones; Immunoblotting; Immunoprecipitation; Lysine; Methylation; Mice; Mice, Inbred C3H; Proto-Oncogene Proteins c-fos; Proto-Oncogene Proteins c-jun; Reverse Transcriptase Polymerase Chain Reaction; RNA, Small Interfering; Transcription, Genetic; Transcriptional Activation; Transfection

2008
PR-Set7-dependent lysine methylation ensures genome replication and stability through S phase.
    The Journal of cell biology, 2007, Dec-31, Volume: 179, Issue:7

    Topics: Ataxia Telangiectasia Mutated Proteins; Cell Cycle Proteins; Cell Line, Tumor; DNA Damage; DNA Repair; DNA Replication; DNA-Binding Proteins; Down-Regulation; Genomic Instability; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation; Protein Processing, Post-Translational; Protein Serine-Threonine Kinases; RNA, Small Interfering; S Phase; Tumor Suppressor Proteins

2007
Interplay of chromatin modifiers on a short basic patch of histone H4 tail defines the boundary of telomeric heterochromatin.
    Molecular cell, 2007, Dec-28, Volume: 28, Issue:6

    Topics: Acetylation; Blotting, Western; Chromatin; Chromatin Immunoprecipitation; Fungal Proteins; Heterochromatin; Histones; Lysine; Methylation; Nuclear Proteins; Nucleosomes; Protein Binding; Telomere; Yeasts

2007
CENP-B controls centromere formation depending on the chromatin context.
    Cell, 2007, Dec-28, Volume: 131, Issue:7

    Topics: Animals; Autoantigens; Cell Line, Transformed; Cell Line, Tumor; Centromere; Centromere Protein A; Centromere Protein B; Chromatin; Chromatin Assembly and Disassembly; Chromatin Immunoprecipitation; Chromosomal Proteins, Non-Histone; Chromosomes, Artificial, Human; Chromosomes, Artificial, Mammalian; CpG Islands; DNA Methylation; DNA, Satellite; Embryo, Mammalian; Fibroblasts; Heterochromatin; Histones; Humans; In Situ Hybridization, Fluorescence; Lysine; Methylation; Mice; Mice, Knockout; Nucleic Acid Conformation; Protein Binding; Time Factors; Transfection

2007
Deubiquitylation of histone H2A activates transcriptional initiation via trans-histone cross-talk with H3K4 di- and trimethylation.
    Genes & development, 2008, Jan-01, Volume: 22, Issue:1

    Topics: Animals; Chromatin; Chromatin Immunoprecipitation; Histone Deacetylases; Histones; Lysine; Methylation; Mice; Models, Biological; Models, Genetic; Transcription Initiation Site; Transcriptional Activation; Ubiquitin; Ubiquitin Thiolesterase; Ubiquitination

2008
Developmental information but not promoter activity controls the methylation state of histone H3 lysine 4 on two photosynthetic genes in maize.
    The Plant journal : for cell and molecular biology, 2008, Volume: 53, Issue:3

    Topics: Chromatin Immunoprecipitation; Epigenesis, Genetic; Genes, Plant; Histones; Lysine; Methylation; Photosynthesis; Plant Leaves; Polymerase Chain Reaction; Promoter Regions, Genetic; Zea mays

2008
Histone H3 tails containing dimethylated lysine and adjacent phosphorylated serine modifications adopt a specific conformation during mitosis and meiosis.
    Molecular and cellular biology, 2008, Volume: 28, Issue:5

    Topics: Animals; Bisbenzimidazole; Female; Fluorescent Dyes; HeLa Cells; Histones; Humans; Hydrogen Bonding; Lysine; Male; Meiosis; Methylation; Mice; Mice, Inbred Strains; Mitosis; NIH 3T3 Cells; Oocytes; Phosphorylation; Protein Conformation; Serine; Testis

2008
DNA oxidation as triggered by H3K9me2 demethylation drives estrogen-induced gene expression.
    Science (New York, N.Y.), 2008, Jan-11, Volume: 319, Issue:5860

    Topics: Cell Line, Tumor; Cells, Cultured; Chromatin; DNA; DNA Damage; DNA Glycosylases; DNA Repair; DNA Topoisomerases, Type II; DNA-Binding Proteins; Enhancer Elements, Genetic; Estradiol; Estrogen Receptor alpha; Gene Expression Regulation; Genes, bcl-2; Guanine; Histone Demethylases; Histones; Humans; Hydrogen Peroxide; Lysine; Methylation; Nucleic Acid Conformation; Oxidation-Reduction; Oxidoreductases, N-Demethylating; Promoter Regions, Genetic; RNA Polymerase II; Transcription, Genetic

2008
A conserved SET domain methyltransferase, Set11, modifies ribosomal protein Rpl12 in fission yeast.
    The Journal of biological chemistry, 2008, Mar-14, Volume: 283, Issue:11

    Topics: Amino Acid Sequence; HeLa Cells; Humans; Lysine; Mass Spectrometry; Methylation; Methyltransferases; Models, Biological; Molecular Sequence Data; Protein Processing, Post-Translational; Protein Structure, Tertiary; Recombinant Proteins; Ribosomal Proteins; Ribosomes; Schizosaccharomyces; Schizosaccharomyces pombe Proteins; Sequence Homology, Amino Acid

2008
Differential loss of histone H3 isoforms mono-, di- and tri-methylated at lysine 4 during X-inactivation in female embryonic stem cells.
    Biological chemistry, 2008, Volume: 389, Issue:4

    Topics: Animals; Cell Differentiation; Dosage Compensation, Genetic; Embryonic Stem Cells; Epigenesis, Genetic; Female; Fluorescent Antibody Technique; Histones; Immunoprecipitation; In Situ Hybridization, Fluorescence; Lysine; Metaphase; Methylation; Mice; X Chromosome Inactivation

2008
The organization of histone H3 modifications as revealed by a panel of specific monoclonal antibodies.
    Cell structure and function, 2008, Volume: 33, Issue:1

    Topics: Acetylation; Animals; Antibodies, Monoclonal; Antibody Specificity; Cellular Senescence; Chromatin Immunoprecipitation; Fibroblasts; Fluorescent Antibody Technique; Histones; Humans; Immunoblotting; Lysine; Methylation; Mice; Nucleosomes

2008
Histone methylation patterns are cell-type specific in human monocytes and lymphocytes and well maintained at core genes.
    Journal of immunology (Baltimore, Md. : 1950), 2008, Feb-15, Volume: 180, Issue:4

    Topics: Adult; Aged; Biomarkers; CpG Islands; Female; Gene Expression Profiling; Genetic Markers; Histones; Humans; Lymphocytes; Lysine; Male; Methylation; Middle Aged; Monocytes; Oligonucleotide Array Sequence Analysis

2008
The Arabidopsis SDG4 contributes to the regulation of pollen tube growth by methylation of histone H3 lysines 4 and 36 in mature pollen.
    Developmental biology, 2008, Mar-15, Volume: 315, Issue:2

    Topics: Amino Acid Sequence; Arabidopsis; Arabidopsis Proteins; Base Sequence; Cell Line; DNA Primers; DNA, Plant; Genes, Plant; Histone-Lysine N-Methyltransferase; Histones; Lysine; Methylation; Molecular Sequence Data; Mutation; Nicotiana; Oligonucleotide Array Sequence Analysis; Plants, Genetically Modified; Pollen; Pollen Tube; Sequence Homology, Amino Acid

2008
Beyond histone methyl-lysine binding: how malignant brain tumor (MBT) protein L3MBTL1 impacts chromatin structure.
    Cell cycle (Georgetown, Tex.), 2008, Mar-01, Volume: 7, Issue:5

    Topics: Animals; Chromatin; Chromosomal Proteins, Non-Histone; Gene Expression Regulation, Neoplastic; Histones; Humans; Lysine; Methylation; Mitosis; Neoplasm Proteins; Protein Binding; Protein Structure, Tertiary; Repressor Proteins; Tumor Suppressor Proteins

2008
Trypanosome H2Bv replaces H2B in nucleosomes enriched for H3 K4 and K76 trimethylation.
    Biochemical and biophysical research communications, 2008, Apr-18, Volume: 368, Issue:4

    Topics: Amino Acid Sequence; Animals; Histones; Lysine; Methylation; Molecular Sequence Data; Nucleosomes; Sequence Alignment; Trypanosoma brucei brucei

2008
The ankyrin repeats of G9a and GLP histone methyltransferases are mono- and dimethyllysine binding modules.
    Nature structural & molecular biology, 2008, Volume: 15, Issue:3

    Topics: Animals; Ankyrin Repeat; Chlorocebus aethiops; COS Cells; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation; Methyltransferases; Mice; Mutant Proteins; Mutation; Peptides; Protein Binding

2008
Methylation of p53 by Set7/9 mediates p53 acetylation and activity in vivo.
    Molecular cell, 2008, Feb-15, Volume: 29, Issue:3

    Topics: Acetylation; Acetyltransferases; Animals; Cell Cycle; Cell Line; Cell Line, Transformed; Cell Transformation, Viral; DNA Damage; Embryo, Mammalian; Fibroblasts; Gene Dosage; Glutathione Transferase; HCT116 Cells; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Humans; Kidney; Lysine; Methylation; Mice; Mice, Inbred C57BL; Mice, Knockout; Mutation; Protein Methyltransferases; Tumor Suppressor Protein p53

2008
Ezh2 requires PHF1 to efficiently catalyze H3 lysine 27 trimethylation in vivo.
    Molecular and cellular biology, 2008, Volume: 28, Issue:8

    Topics: Catalysis; Cell Line; Cell Proliferation; Cell Shape; DNA-Binding Proteins; Enhancer of Zeste Homolog 2 Protein; Homeodomain Proteins; Humans; Lysine; Methylation; Polycomb Repressive Complex 2; Polycomb-Group Proteins; Promoter Regions, Genetic; Protein Binding; Repressor Proteins; RNA, Small Interfering; Transcription Factors; Transcription, Genetic

2008
DOT1L/KMT4 recruitment and H3K79 methylation are ubiquitously coupled with gene transcription in mammalian cells.
    Molecular and cellular biology, 2008, Volume: 28, Issue:8

    Topics: Adipocytes; Animals; CD36 Antigens; Cell Differentiation; Cells, Cultured; Chromatin; Chromatin Immunoprecipitation; GATA1 Transcription Factor; Globins; Histone-Lysine N-Methyltransferase; Histones; Lysine; Methylation; Methyltransferases; Mice; Mice, Inbred C57BL; PPAR gamma; Sodium Dodecyl Sulfate; Transcription, Genetic

2008
Serological reactivity and biochemical characterization of methylated and unmethylated forms of a recombinant protein fragment derived from outer membrane protein B of Rickettsia typhi.
    Clinical and vaccine immunology : CVI, 2008, Volume: 15, Issue:4

    Topics: Antibodies, Bacterial; Antibody Specificity; Bacterial Outer Membrane Proteins; Chromatography, Liquid; Cloning, Molecular; Enzyme-Linked Immunosorbent Assay; Humans; Lysine; Mass Spectrometry; Methylation; Peptide Fragments; Protein Folding; Recombinant Proteins; Rickettsia typhi

2008
Epigenetic marking prepares the human HOXA cluster for activation during differentiation of pluripotent cells.
    Stem cells (Dayton, Ohio), 2008, Volume: 26, Issue:5

    Topics: Acetylation; Animals; Carcinoma, Embryonal; Cell Differentiation; Cell Line; Epigenesis, Genetic; Gene Expression Regulation, Developmental; Genome, Human; Histones; Homeodomain Proteins; Humans; Lysine; Methylation; Mice; Pluripotent Stem Cells

2008
Preferential dimethylation of histone H4 lysine 20 by Suv4-20.
    The Journal of biological chemistry, 2008, May-02, Volume: 283, Issue:18

    Topics: Animals; Chromobox Protein Homolog 5; Chromosomal Proteins, Non-Histone; DNA (Cytosine-5-)-Methyltransferases; DNA Damage; Drosophila melanogaster; Drosophila Proteins; HeLa Cells; Histone-Lysine N-Methyltransferase; Histones; Humans; Intracellular Signaling Peptides and Proteins; Lysine; Mass Spectrometry; Methylation; RNA Interference; RNA, Small Interfering; Tumor Suppressor p53-Binding Protein 1

2008
Histone lysine methyltransferases and demethylases in Plasmodium falciparum.
    International journal for parasitology, 2008, Volume: 38, Issue:10

    Topics: Amino Acid Sequence; Animals; Cells, Cultured; Erythrocytes; Gene Expression Regulation, Developmental; Genes, Protozoan; Histone-Lysine N-Methyltransferase; Humans; Lysine; Methylation; Molecular Sequence Data; Phylogeny; Plasmodium falciparum; Protozoan Proteins; Reverse Transcriptase Polymerase Chain Reaction; Sequence Alignment; Substrate Specificity

2008
Class-specific regulation of pro-inflammatory genes by MyD88 pathways and IkappaBzeta.
    The Journal of biological chemistry, 2008, May-02, Volume: 283, Issue:18

    Topics: Adaptor Proteins, Signal Transducing; Animals; Cells, Cultured; Chromatin Assembly and Disassembly; DNA Helicases; Gene Expression Regulation; Histones; Inflammation Mediators; Lysine; Macrophages; Methylation; Mice; Models, Genetic; Myeloid Differentiation Factor 88; Nuclear Proteins; Nucleosomes; Promoter Regions, Genetic; Transcription Factors

2008
Ankyrin for methylated lysines.
    Nature structural & molecular biology, 2008, Volume: 15, Issue:3

    Topics: Animals; Ankyrin Repeat; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation; Mice

2008
X-chromosome inactivation and epigenetic fluidity in human embryonic stem cells.
    Proceedings of the National Academy of Sciences of the United States of America, 2008, Mar-25, Volume: 105, Issue:12

    Topics: Cell Differentiation; Cell Line; Cell Nucleus; Embryonic Stem Cells; Epigenesis, Genetic; Histones; Humans; In Situ Hybridization, Fluorescence; Karyotyping; Lysine; Methylation; Reverse Transcriptase Polymerase Chain Reaction; RNA, Long Noncoding; RNA, Untranslated; X Chromosome Inactivation

2008
Transcription-coupled methylation of histone H3 at lysine 36 regulates dosage compensation by enhancing recruitment of the MSL complex in Drosophila melanogaster.
    Molecular and cellular biology, 2008, Volume: 28, Issue:10

    Topics: Animals; Binding Sites; Cell Line; Chromatin Immunoprecipitation; Dosage Compensation, Genetic; Drosophila melanogaster; Drosophila Proteins; Female; Histones; Lysine; Male; Methylation; Models, Biological; Multiprotein Complexes; RNA Interference; Sex Determination Processes; Transcription Factors; Transcription, Genetic; X Chromosome

2008
Human ES cell profiling broadens the reach of bivalent domains.
    Cell stem cell, 2007, Sep-13, Volume: 1, Issue:3

    Topics: Animals; Embryonic Stem Cells; Epigenesis, Genetic; Gene Expression Profiling; Genome, Human; Histones; Humans; Lysine; Methylation; Mice; Promoter Regions, Genetic; Transcription, Genetic

2007
Whole-genome mapping of histone H3 Lys4 and 27 trimethylations reveals distinct genomic compartments in human embryonic stem cells.
    Cell stem cell, 2007, Sep-13, Volume: 1, Issue:3

    Topics: Animals; Cell Differentiation; Conserved Sequence; DNA-Binding Proteins; DNA, Intergenic; Embryonic Stem Cells; Gene Expression Profiling; Genome, Human; Histones; Humans; Lysine; Methylation; Mice; Proteasome Endopeptidase Complex; Protein Transport; Transcription, Genetic; Up-Regulation; Vertebrates

2007
Whole-genome analysis of histone H3 lysine 4 and lysine 27 methylation in human embryonic stem cells.
    Cell stem cell, 2007, Sep-13, Volume: 1, Issue:3

    Topics: Cell Differentiation; Cell Lineage; Embryonic Stem Cells; Gene Expression Regulation; Genome, Human; Histones; Humans; Lysine; Methylation; Promoter Regions, Genetic; Protein Transport

2007
Activating signal cointegrator-2 is an essential adaptor to recruit histone H3 lysine 4 methyltransferases MLL3 and MLL4 to the liver X receptors.
    Molecular endocrinology (Baltimore, Md.), 2008, Volume: 22, Issue:6

    Topics: Adaptor Proteins, Signal Transducing; Amino Acid Sequence; Animals; Cells, Cultured; DNA-Binding Proteins; Embryo, Mammalian; Histone-Lysine N-Methyltransferase; Histones; Humans; Intracellular Signaling Peptides and Proteins; Liver X Receptors; Lysine; Methylation; Mice; Mice, Knockout; Models, Biological; Nuclear Receptor Coactivators; Orphan Nuclear Receptors; Protein Binding; Proto-Oncogene Proteins; Receptors, Cytoplasmic and Nuclear; Transcriptional Activation

2008
ARABIDOPSIS TRITHORAX1 dynamically regulates FLOWERING LOCUS C activation via histone 3 lysine 4 trimethylation.
    The Plant cell, 2008, Volume: 20, Issue:3

    Topics: Arabidopsis Proteins; Chromatin; Chromatin Immunoprecipitation; Gene Expression Regulation, Plant; Histone-Lysine N-Methyltransferase; Histones; In Situ Hybridization; Lysine; MADS Domain Proteins; Methylation; Models, Biological; Plants, Genetically Modified; Protein Binding; Reverse Transcriptase Polymerase Chain Reaction; Transcription Factors

2008
Enzymatic mechanism and product specificity of SET-domain protein lysine methyltransferases.
    Proceedings of the National Academy of Sciences of the United States of America, 2008, Apr-15, Volume: 105, Issue:15

    Topics: Chromatin; Histone-Lysine N-Methyltransferase; Lysine; Methylation; Models, Molecular; Quantum Theory; S-Adenosylhomocysteine; S-Adenosylmethionine

2008
Polycomb repressive complex 2 is dispensable for maintenance of embryonic stem cell pluripotency.
    Stem cells (Dayton, Ohio), 2008, Volume: 26, Issue:6

    Topics: Animals; Chimera; Embryonic Stem Cells; Immunohistochemistry; Jumonji Domain-Containing Histone Demethylases; Lysine; Methylation; Mice; Mice, Knockout; Oligonucleotide Array Sequence Analysis; Oxidoreductases, N-Demethylating; Pluripotent Stem Cells; Polycomb Repressive Complex 2; Polycomb-Group Proteins; Repressor Proteins; Reverse Transcriptase Polymerase Chain Reaction

2008
Histone H4 lysine 20 monomethylation promotes transcriptional repression by L3MBTL1.
    Oncogene, 2008, Jul-17, Volume: 27, Issue:31

    Topics: Binding Sites; Cell Cycle; Chromatin; Chromosomal Proteins, Non-Histone; Gene Expression Regulation; Histone-Lysine N-Methyltransferase; Histones; Humans; K562 Cells; Lysine; Methylation; Neoplasm Proteins; Protein Binding; Repressor Proteins; Transcription, Genetic; Tumor Suppressor Proteins

2008
Post-translational modifications of Desulfovibrio vulgaris Hildenborough sulfate reduction pathway proteins.
    Journal of proteome research, 2008, Volume: 7, Issue:6

    Topics: Acetylation; Amino Acid Sequence; Bacterial Proteins; Chromatography, Liquid; Desulfovibrio desulfuricans; Desulfovibrio vulgaris; Hydrogensulfite Reductase; Lysine; Metabolic Networks and Pathways; Methylation; Models, Molecular; Molecular Sequence Data; Oxidation-Reduction; Oxidoreductases Acting on Sulfur Group Donors; Protein Conformation; Protein Processing, Post-Translational; Ribosomal Proteins; Sequence Homology, Amino Acid; Sulfate Adenylyltransferase; Sulfates; Tandem Mass Spectrometry

2008
Changes on histone H3 modifications on the GLUT5 gene and its expression in Caco-2 cells co-treated with a p44/42 MAPK inhibitor and glucocorticoid hormone.
    Biochemical and biophysical research communications, 2008, Jun-27, Volume: 371, Issue:2

    Topics: Acetylation; Caco-2 Cells; Dexamethasone; Flavonoids; Gene Expression; Gene Expression Regulation; Glucocorticoids; Glucose Transporter Type 5; Histones; Humans; Lysine; Methylation; Mitogen-Activated Protein Kinase 1; Mitogen-Activated Protein Kinase 3; Protein Kinase Inhibitors

2008
Chemically ubiquitylated histone H2B stimulates hDot1L-mediated intranucleosomal methylation.
    Nature, 2008, Jun-05, Volume: 453, Issue:7196

    Topics: Allosteric Regulation; Animals; Catalytic Domain; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation; Methyltransferases; Nucleosomes; Ubiquitin; Xenopus

2008
Regulation of estrogen receptor alpha by the SET7 lysine methyltransferase.
    Molecular cell, 2008, May-09, Volume: 30, Issue:3

    Topics: Amino Acid Sequence; Breast Neoplasms; Cell Line; Crystallography, X-Ray; Estrogen Receptor alpha; Estrogens; Female; Gene Expression Regulation; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Humans; Lysine; Methylation; Models, Molecular; Molecular Sequence Data; Mutation; Peptides; Protein Conformation; Protein Methyltransferases; Sequence Alignment

2008
Differential H3K4 methylation identifies developmentally poised hematopoietic genes.
    Developmental cell, 2008, Volume: 14, Issue:5

    Topics: Animals; Binding Sites; Bone Marrow Cells; Cell Differentiation; Cell Line; Cell Lineage; CpG Islands; Embryonic Stem Cells; Gene Expression Regulation, Developmental; Genes, Developmental; Genome; Hematopoietic System; Histones; Humans; Lysine; Methylation; Mice; Models, Genetic; Promoter Regions, Genetic; Transcription Factors; Transcription Initiation Site; Transcription, Genetic

2008
A genomic analysis of RNA polymerase II modification and chromatin architecture related to 3' end RNA polyadenylation.
    Genome research, 2008, Volume: 18, Issue:8

    Topics: Cell Line; Chromatin; Chromatin Immunoprecipitation; Genomics; HeLa Cells; Histones; Humans; Lysine; Methylation; Oligonucleotide Array Sequence Analysis; Polyadenylation; RNA Polymerase II; RNA, Messenger; Transcription, Genetic

2008
A gateway to study protein lysine methylation.
    Nature chemical biology, 2008, Volume: 4, Issue:6

    Topics: Amino Acid Motifs; Binding Sites; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Histones; Lysine; Methylation; Protein Array Analysis; Protein Methyltransferases; Substrate Specificity

2008
Chemical answers to epigenetic crosstalk.
    Nature chemical biology, 2008, Volume: 4, Issue:6

    Topics: Epigenesis, Genetic; Histone-Lysine N-Methyltransferase; Histones; Lysine; Methylation; Methyltransferases; Models, Biological; Mutation; Protein Processing, Post-Translational; Transcription, Genetic; Ubiquitin

2008
Lysine methylation of HIV-1 Tat regulates transcriptional activity of the viral LTR.
    Retrovirology, 2008, May-22, Volume: 5

    Topics: Cell Line; Genes, Reporter; Histone-Lysine N-Methyltransferase; HIV Long Terminal Repeat; HIV-1; Humans; Lysine; Methylation; Protein Binding; Protein Methyltransferases; Protein Processing, Post-Translational; Protein Structure, Tertiary; RNA, Small Interfering; tat Gene Products, Human Immunodeficiency Virus; Transcription, Genetic; Transcriptional Activation; Virus Activation

2008
Decoding of methylated histone H3 tail by the Pygo-BCL9 Wnt signaling complex.
    Molecular cell, 2008, May-23, Volume: 30, Issue:4

    Topics: Adaptor Proteins, Signal Transducing; Amino Acid Sequence; Animals; Binding Sites; Crystallography, X-Ray; Drosophila melanogaster; Drosophila Proteins; Histones; Humans; Intracellular Signaling Peptides and Proteins; Lysine; Methylation; Models, Molecular; Molecular Sequence Data; Multiprotein Complexes; Neoplasm Proteins; Peptides; Protein Binding; Protein Conformation; Recombinant Fusion Proteins; Sequence Alignment; Signal Transduction; Transcription Factors; Wnt Proteins

2008
The PHD domain of the sea urchin RAG2 homolog, SpRAG2L, recognizes dimethylated lysine 4 in histone H3 tails.
    Developmental and comparative immunology, 2008, Volume: 32, Issue:10

    Topics: Amino Acid Sequence; Animals; Cell Line; Conserved Sequence; DNA-Binding Proteins; Histones; Humans; Lysine; Methylation; Mice; Molecular Sequence Data; Mutation; Protein Binding; Sea Urchins; Sequence Alignment

2008
Developmental regulation of histone H3 methylation at lysine 4 in the porcine ovary.
    Reproduction (Cambridge, England), 2008, Volume: 135, Issue:6

    Topics: Animals; Epigenesis, Genetic; Female; Fluorescent Antibody Technique; Granulosa Cells; Histones; Lysine; Methylation; Oogenesis; Ovarian Follicle; Ovary; Pregnancy; Protein Processing, Post-Translational; Sus scrofa

2008
Product specificity and mechanism of protein lysine methyltransferases: insights from the histone lysine methyltransferase SET8.
    Biochemistry, 2008, Jun-24, Volume: 47, Issue:25

    Topics: Catalysis; Histone-Lysine N-Methyltransferase; Histones; Humans; Kinetics; Lysine; Methylation; Models, Chemical; Models, Molecular; Molecular Dynamics Simulation; Molecular Structure; Protein Binding; Protein Structure, Tertiary; Quantum Theory; S-Adenosylhomocysteine; S-Adenosylmethionine; Static Electricity; Substrate Specificity

2008
ING2 recruits histone methyltransferase activity with methylation site specificity distinct from histone H3 lysines 4 and 9.
    Biochimica et biophysica acta, 2008, Volume: 1783, Issue:10

    Topics: Animals; Cell Line; Chlorocebus aethiops; Gene Deletion; Gene Silencing; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Histones; Homeodomain Proteins; Humans; Lysine; Methylation; Mice; Mutation; Protein Methyltransferases; Receptors, Cytoplasmic and Nuclear; Substrate Specificity; Transcription, Genetic; Tumor Suppressor Protein p53; Tumor Suppressor Proteins

2008
Simplifying a complex code.
    Nature structural & molecular biology, 2008, Volume: 15, Issue:6

    Topics: Epigenesis, Genetic; Histones; Lysine; Methylation

2008
Histone H3K4me3 binding is required for the DNA repair and apoptotic activities of ING1 tumor suppressor.
    Journal of molecular biology, 2008, Jul-04, Volume: 380, Issue:2

    Topics: Apoptosis; Crystallography, X-Ray; DNA Repair; Histones; Humans; Inhibitor of Growth Protein 1; Intracellular Signaling Peptides and Proteins; Lysine; Methylation; Models, Molecular; Molecular Sequence Data; Mutation; Neoplasms; Nuclear Proteins; Peptides; Protein Array Analysis; Protein Binding; Protein Structure, Tertiary; Tumor Suppressor Proteins

2008
The CHD3 remodeler PICKLE promotes trimethylation of histone H3 lysine 27.
    The Journal of biological chemistry, 2008, Aug-15, Volume: 283, Issue:33

    Topics: Arabidopsis; Arabidopsis Proteins; DNA Helicases; Gene Expression Regulation, Plant; Germination; Histone Deacetylases; Histones; Lysine; Methylation; Miconazole; Seedlings; Seeds

2008
Roles for Ctk1 and Spt6 in regulating the different methylation states of histone H3 lysine 36.
    Molecular and cellular biology, 2008, Volume: 28, Issue:16

    Topics: Acetylation; Chromatin; Gene Expression Regulation, Fungal; Histone Chaperones; Histones; Lysine; Methylation; Nuclear Proteins; Promoter Regions, Genetic; Protein Kinases; Protein Structure, Tertiary; Recombinant Proteins; Repressor Proteins; RNA Polymerase II; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins; Transcriptional Elongation Factors

2008
Epigenetic histone H3 lysine 9 methylation in metabolic memory and inflammatory phenotype of vascular smooth muscle cells in diabetes.
    Proceedings of the National Academy of Sciences of the United States of America, 2008, Jul-01, Volume: 105, Issue:26

    Topics: Animals; Chromobox Protein Homolog 5; Chromosomal Proteins, Non-Histone; Diabetes Mellitus; Epigenesis, Genetic; Glucose; Histones; Humans; Immunologic Memory; Inflammation; Lysine; Methylation; Methyltransferases; Mice; Muscle, Smooth, Vascular; Myocytes, Smooth Muscle; Phenotype; Promoter Regions, Genetic; Protein Binding; Repressor Proteins; Tumor Necrosis Factor-alpha

2008
Just the FACTs: histone H2B ubiquitylation and nucleosome dynamics.
    Molecular cell, 2008, Jul-11, Volume: 31, Issue:1

    Topics: Chromatin; Histones; Lysine; Methylation; Nucleosomes; Protein Binding; Saccharomyces cerevisiae; Transcription, Genetic; Ubiquitination

2008
H2B ubiquitylation plays a role in nucleosome dynamics during transcription elongation.
    Molecular cell, 2008, Jul-11, Volume: 31, Issue:1

    Topics: Cell Cycle Proteins; Chromatin; Galactokinase; Histones; Kinetics; Lysine; Methylation; Nucleosomes; Protein Binding; RNA Polymerase II; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins; Transcription Factors; Transcription, Genetic; Transcriptional Elongation Factors; Ubiquitination

2008
Site-specific incorporation of methyl- and acetyl-lysine analogues into recombinant proteins.
    Angewandte Chemie (International ed. in English), 2008, Volume: 47, Issue:34

    Topics: Acetylation; Animals; Aurora Kinases; Codon, Terminator; Histones; Lysine; Methanococcus; Methylation; Protein Processing, Post-Translational; Protein Serine-Threonine Kinases; Recombinant Proteins; RNA, Transfer, Amino Acyl; Selenocysteine; Tyrosine-tRNA Ligase; Xenopus

2008
siRNA-mediated heterochromatin establishment requires HP1 and is associated with antisense transcription.
    Molecular cell, 2008, Jul-25, Volume: 31, Issue:2

    Topics: Adenosine Triphosphatases; Catalysis; Centromere; Chromobox Protein Homolog 5; Chromosomal Proteins, Non-Histone; DNA, Antisense; Gene Silencing; Heterochromatin; Histones; Inheritance Patterns; Lysine; Methylation; Models, Genetic; Nucleic Acid Conformation; RNA-Dependent RNA Polymerase; RNA, Small Interfering; Schizosaccharomyces; Schizosaccharomyces pombe Proteins; Transcription, Genetic; Transgenes

2008
Antagonism between DNA and H3K27 methylation at the imprinted Rasgrf1 locus.
    PLoS genetics, 2008, Aug-01, Volume: 4, Issue:8

    Topics: Alleles; Animals; Cells, Cultured; DNA Methylation; Female; Genomic Imprinting; Histones; Lysine; Male; Methylation; Mice; Mice, Inbred Strains; Models, Genetic; ras-GRF1; Species Specificity

2008
Role of the lysine-specific demethylase 1 in the proinflammatory phenotype of vascular smooth muscle cells of diabetic mice.
    Circulation research, 2008, Sep-12, Volume: 103, Issue:6

    Topics: Animals; Diabetes Mellitus, Type 2; Histone Demethylases; Histones; Humans; Inflammation Mediators; Lysine; Male; Methylation; Mice; Mice, Knockout; Mice, Mutant Strains; Muscle, Smooth, Vascular; Myocytes, Smooth Muscle; Oxidoreductases, N-Demethylating; Phenotype

2008
Role of hMOF-dependent histone H4 lysine 16 acetylation in the maintenance of TMS1/ASC gene activity.
    Cancer research, 2008, Aug-15, Volume: 68, Issue:16

    Topics: Acetylation; Antigens, CD; Apoptosis; Blotting, Western; Breast Neoplasms; Cadherins; CARD Signaling Adaptor Proteins; Cells, Cultured; Chromatin Immunoprecipitation; CpG Islands; Cytoskeletal Proteins; Epigenesis, Genetic; Estrogen Receptor alpha; Fibroblasts; Gene Expression Regulation, Neoplastic; Histone Acetyltransferases; Histones; Humans; Kidney; Lysine; Methylation; Nucleosomes; Polymerase Chain Reaction; RNA, Small Interfering

2008
Testis-specific histone variants H2AL1/2 rapidly disappear from paternal heterochromatin after fertilization.
    The Journal of reproduction and development, 2008, Volume: 54, Issue:6

    Topics: Acetylation; Animals; Female; Fertilization in Vitro; Genetic Variation; Heterochromatin; Histones; Lysine; Male; Methylation; Mice; Sperm Injections, Intracytoplasmic; Sperm-Ovum Interactions; Spermatozoa; Testis; Zygote

2008
The malignant brain tumor repeats of human SCML2 bind to peptides containing monomethylated lysine.
    Journal of molecular biology, 2008, Oct-24, Volume: 382, Issue:5

    Topics: Binding Sites; DNA-Binding Proteins; Epigenesis, Genetic; Histones; Humans; In Vitro Techniques; Kinetics; Ligands; Lysine; Methylation; Models, Molecular; Nuclear Magnetic Resonance, Biomolecular; Peptides; Polycomb-Group Proteins; Protein Binding; Protein Conformation; Repetitive Sequences, Amino Acid; Transcription Factors

2008
Genome-wide analysis of the H3K4 histone demethylase RBP2 reveals a transcriptional program controlling differentiation.
    Molecular cell, 2008, Aug-22, Volume: 31, Issue:4

    Topics: Binding Sites; Cell Differentiation; Gene Expression Profiling; Gene Expression Regulation; Genome, Human; Genomics; Histones; Humans; Intracellular Signaling Peptides and Proteins; Lysine; Methylation; Mitochondria; Models, Biological; Nucleosomes; Oxidoreductases, N-Demethylating; Promoter Regions, Genetic; Protein Binding; Repressor Proteins; Retinoblastoma-Binding Protein 2; Sequence Analysis, DNA; Transcription Factors; Transcription, Genetic; Tumor Suppressor Proteins

2008
BAT3 and SET1A form a complex with CTCFL/BORIS to modulate H3K4 histone dimethylation and gene expression.
    Molecular and cellular biology, 2008, Volume: 28, Issue:21

    Topics: Animals; BRCA1 Protein; Chlorocebus aethiops; COS Cells; DNA-Binding Proteins; Gene Expression Regulation, Neoplastic; HCT116 Cells; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation; Molecular Chaperones; Nuclear Proteins; Promoter Regions, Genetic; Protein Binding; Proteins; Proto-Oncogene Proteins c-myc; RNA, Long Noncoding; RNA, Small Interfering; RNA, Untranslated; Transcription Factors

2008
Histone H3 modifications associated with differentiation and long-term culture of mesenchymal adipose stem cells.
    Stem cells and development, 2009, Volume: 18, Issue:5

    Topics: Acetylation; Adipogenesis; Adipose Tissue; Adult; Cell Culture Techniques; Cell Differentiation; Cell Lineage; Cells, Cultured; Cellular Senescence; DNA-Binding Proteins; Enhancer of Zeste Homolog 2 Protein; Female; Gene Expression Regulation; Histones; Humans; Keratinocytes; Lysine; Mesenchymal Stem Cells; Methylation; Nuclear Proteins; Organ Specificity; Polycomb Repressive Complex 1; Polycomb Repressive Complex 2; Promoter Regions, Genetic; Protein Processing, Post-Translational; Proto-Oncogene Proteins; Repressor Proteins; Time Factors; Transcription Factors; Transcription, Genetic

2009
Genome-wide association of histone H3 lysine nine methylation with CHG DNA methylation in Arabidopsis thaliana.
    PloS one, 2008, Sep-08, Volume: 3, Issue:9

    Topics: Arabidopsis; Arabidopsis Proteins; Chromatin; Chromatin Immunoprecipitation; DNA Methylation; DNA Transposable Elements; Epigenesis, Genetic; Genes, Plant; Genome-Wide Association Study; Genome, Plant; Heterochromatin; Histones; Lysine; Methylation; RNA, Small Interfering; Transcription, Genetic

2008
Alterations of lysine modifications on the histone H3 N-tail under drought stress conditions in Arabidopsis thaliana.
    Plant & cell physiology, 2008, Volume: 49, Issue:10

    Topics: Acetylation; Arabidopsis; Arabidopsis Proteins; Chromatin Immunoprecipitation; Disasters; Gene Expression Profiling; Gene Expression Regulation, Plant; Histones; Lysine; Methylation; Nucleosomes; Open Reading Frames; Promoter Regions, Genetic; Protein Processing, Post-Translational; Reverse Transcriptase Polymerase Chain Reaction; RNA Polymerase II; RNA, Messenger; RNA, Plant; Transcriptional Activation

2008
Modulation of retinoic acid receptor alpha activity by lysine methylation in the DNA binding domain.
    Journal of proteome research, 2008, Volume: 7, Issue:10

    Topics: Amino Acid Sequence; Animals; Binding Sites; Chlorocebus aethiops; COS Cells; DNA-Binding Proteins; Histone-Lysine N-Methyltransferase; Lysine; Methylation; Mice; Molecular Sequence Data; Protein Structure, Tertiary; Receptors, Retinoic Acid; Recombinant Fusion Proteins; Retinoic Acid Receptor alpha

2008
Polycomb gene expression and histone H3 lysine 27 trimethylation changes during bovine preimplantation development.
    Reproduction (Cambridge, England), 2008, Volume: 136, Issue:6

    Topics: Animals; Blastocyst; Cattle; Embryonic Development; Fertilization in Vitro; Gene Expression; Gene Expression Regulation, Developmental; Histones; Immunoblotting; Lysine; Methylation; Microscopy, Confocal; Oocytes; Polycomb-Group Proteins; Repressor Proteins; Reverse Transcriptase Polymerase Chain Reaction

2008
Genome-wide relationship between histone H3 lysine 4 mono- and tri-methylation and transcription factor binding.
    Genome research, 2008, Volume: 18, Issue:12

    Topics: Animals; Base Sequence; Binding Sites; Cell Line, Transformed; Chromatin Immunoprecipitation; Female; Gene Expression Regulation; Genome, Human; HeLa Cells; Hepatocyte Nuclear Factor 3-beta; Histones; Humans; Interferon-gamma; Lysine; Methylation; Mice; Mice, Inbred C57BL; Protein Binding; Regulatory Sequences, Nucleic Acid; Sequence Homology, Nucleic Acid; STAT1 Transcription Factor; Transcription Factors

2008
The effect of H3K79 dimethylation and H4K20 trimethylation on nucleosome and chromatin structure.
    Nature structural & molecular biology, 2008, Volume: 15, Issue:10

    Topics: Chromatin; Crystallography, X-Ray; Histones; Lysine; Methylation; Models, Molecular; Nucleosomes; Protein Structure, Tertiary

2008
Age-related difference of site-specific histone modifications in rat liver.
    Biogerontology, 2009, Volume: 10, Issue:4

    Topics: Acetylation; Age Factors; Aging; Amino Acid Sequence; Animals; Chromatin Assembly and Disassembly; Epigenesis, Genetic; Histones; Liver; Lysine; Male; Methylation; Molecular Sequence Data; Phosphorylation; Protein Processing, Post-Translational; Rats; Rats, Inbred F344; Serine

2009
Detection of protein-ligand interactions by NMR using reductive methylation of lysine residues.
    Journal of biomolecular NMR, 2008, Volume: 42, Issue:2

    Topics: Calmodulin; Humans; Ligands; Lysine; Methylation; Nuclear Magnetic Resonance, Biomolecular

2008
Di-methyl H4 lysine 20 targets the checkpoint protein Crb2 to sites of DNA damage.
    The Journal of biological chemistry, 2008, Nov-28, Volume: 283, Issue:48

    Topics: Amino Acid Motifs; Cell Cycle Proteins; Chromatin; DNA Damage; DNA, Fungal; Genome, Fungal; Genomic Instability; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Histones; Lysine; Methylation; Protein Binding; Protein Methyltransferases; Protein Processing, Post-Translational; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins

2008
Molecular regulation of H3K4 trimethylation by Wdr82, a component of human Set1/COMPASS.
    Molecular and cellular biology, 2008, Volume: 28, Issue:24

    Topics: Animals; Chromatin; Chromosomal Proteins, Non-Histone; DNA-Binding Proteins; HeLa Cells; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Macromolecular Substances; Methylation; Protein Methyltransferases; Protein Subunits; RNA, Small Interfering

2008
Role for 53BP1 Tudor domain recognition of p53 dimethylated at lysine 382 in DNA damage signaling.
    The Journal of biological chemistry, 2008, Dec-12, Volume: 283, Issue:50

    Topics: Amino Acid Sequence; DNA; DNA Damage; Histones; Humans; Intracellular Signaling Peptides and Proteins; Lysine; Methylation; Molecular Sequence Data; Peptides; Protein Structure, Tertiary; Signal Transduction; Substrate Specificity; Transfection; Tumor Suppressor p53-Binding Protein 1; Tumor Suppressor Protein p53

2008
Origin recognition complex (ORC) mediates histone 3 lysine 4 methylation through cooperation with Spp1 in Saccharomyces cerevisiae.
    The Journal of biological chemistry, 2008, Dec-05, Volume: 283, Issue:49

    Topics: Chromatin; DNA-Binding Proteins; Fungal Proteins; Gene Expression Regulation, Fungal; Histone-Lysine N-Methyltransferase; Histones; Immunoprecipitation; Lysine; Methylation; Models, Biological; Origin Recognition Complex; Plasmids; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins; Temperature; Transcription Factors; Two-Hybrid System Techniques

2008
Drosophila Kismet regulates histone H3 lysine 27 methylation and early elongation by RNA polymerase II.
    PLoS genetics, 2008, Volume: 4, Issue:10

    Topics: Animals; Chromatin Assembly and Disassembly; Chromosomal Proteins, Non-Histone; DNA Helicases; DNA-Binding Proteins; Drosophila melanogaster; Drosophila Proteins; Epigenesis, Genetic; Genes, Insect; Histone-Lysine N-Methyltransferase; Histones; Homeodomain Proteins; Lysine; Methylation; Protein Processing, Post-Translational; RNA Polymerase II; Transcription Factors

2008
H3K9 methylation regulates growth and development in Aspergillus fumigatus.
    Eukaryotic cell, 2008, Volume: 7, Issue:12

    Topics: Animals; Aspergillus fumigatus; Cell Line; Fungal Proteins; Gene Expression Regulation, Fungal; Histone-Lysine N-Methyltransferase; Histones; Lysine; Macrophages; Methylation; Mice; Protein Processing, Post-Translational

2008
Histone H3 K36 methylation is mediated by a trans-histone methylation pathway involving an interaction between Set2 and histone H4.
    Genes & development, 2008, Oct-15, Volume: 22, Issue:20

    Topics: Antimetabolites; Blotting, Western; Chromatin; Chromatin Immunoprecipitation; Gene Expression Regulation, Fungal; Histones; Immunoblotting; Immunoprecipitation; Lysine; Methylation; Methyltransferases; Mutation; Nucleosomes; Phosphorylation; Protein Kinases; Protein Processing, Post-Translational; RNA Polymerase II; Saccharomyces cerevisiae Proteins; Transcription, Genetic; Uracil

2008
A model for transmission of the H3K27me3 epigenetic mark.
    Nature cell biology, 2008, Volume: 10, Issue:11

    Topics: Carrier Proteins; Catalysis; Cell Line; Cells, Cultured; Chromatin; DNA-Binding Proteins; Enhancer of Zeste Homolog 2 Protein; Epigenesis, Genetic; Fibroblasts; G1 Phase; Genes, Reporter; Histones; Humans; Kidney; Luciferases; Lysine; Methylation; Models, Biological; Mutation; Neoplasm Proteins; Nuclear Proteins; Polycomb Repressive Complex 2; Polycomb-Group Proteins; Promoter Regions, Genetic; Repressor Proteins; RNA, Small Interfering; S Phase; Transcription Factors; Transfection

2008
The genomic landscapes of histone H3-Lys9 modifications of gene promoter regions and expression profiles in human bone marrow mesenchymal stem cells.
    Journal of genetics and genomics = Yi chuan xue bao, 2008, Volume: 35, Issue:10

    Topics: Acetylation; Bone Marrow Cells; Cell Cycle; Cell Proliferation; Cytokines; Flow Cytometry; Gene Expression Profiling; Gene Silencing; Genome, Human; Genomics; Histones; Humans; Lysine; Mesenchymal Stem Cells; Methylation; Oligonucleotide Array Sequence Analysis; Promoter Regions, Genetic; Signal Transduction

2008
Prognostic significance of global histone modifications in resected squamous cell carcinoma of the esophagus.
    Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc, 2009, Volume: 22, Issue:2

    Topics: Acetylation; Adult; Aged; Aged, 80 and over; Biomarkers, Tumor; Carcinoma, Squamous Cell; Cell Differentiation; Esophageal Neoplasms; Esophagectomy; Female; Histones; Humans; Immunohistochemistry; Kaplan-Meier Estimate; Lymphatic Metastasis; Lysine; Male; Methylation; Middle Aged; Neoplasm Metastasis; Neoplasm Staging; Protein Processing, Post-Translational; Retrospective Studies; Time Factors; Treatment Outcome

2009
Post-translational modifications guard yeast from misaspartylation.
    Biochemistry, 2008, Nov-25, Volume: 47, Issue:47

    Topics: Amino Acid Sequence; Aminoacylation; Aspartate-tRNA Ligase; Aspartic Acid; Biotin; Gene Expression; Gentamicins; Glycosylation; Lysine; Mass Spectrometry; Methylation; Models, Molecular; Molecular Sequence Data; Protein Conformation; Protein Processing, Post-Translational; Proteome; Saccharomyces cerevisiae

2008
Identification of two SET domain proteins required for methylation of lysine residues in yeast ribosomal protein Rpl42ab.
    The Journal of biological chemistry, 2008, Dec-19, Volume: 283, Issue:51

    Topics: Cycloheximide; Gene Knockdown Techniques; Lysine; Methylation; Methyltransferases; Protein Structure, Tertiary; Protein Synthesis Inhibitors; Ribosomal Proteins; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins

2008
H3K79 methylation profiles define murine and human MLL-AF4 leukemias.
    Cancer cell, 2008, Nov-04, Volume: 14, Issue:5

    Topics: Animals; Biomarkers, Tumor; Cell Differentiation; Cells, Cultured; Chromatin Immunoprecipitation; Female; Flow Cytometry; Gene Expression Profiling; Gene Expression Regulation, Leukemic; Gene Rearrangement; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Histones; Homeodomain Proteins; Humans; Immunophenotyping; Integrases; Leukemia, Myeloid, Acute; Lysine; Male; Methylation; Methyltransferases; Mice; Mice, Transgenic; Myeloid-Lymphoid Leukemia Protein; Oligonucleotide Array Sequence Analysis; Oncogene Proteins, Fusion; Precursor B-Cell Lymphoblastic Leukemia-Lymphoma; Principal Component Analysis; Protein Methyltransferases; RNA, Small Interfering; Transcription, Genetic

2008
High-throughput chromatin information enables accurate tissue-specific prediction of transcription factor binding sites.
    Nucleic acids research, 2009, Volume: 37, Issue:1

    Topics: Animals; Binding Sites; Cell Line; Chromatin; Embryonic Stem Cells; Genomics; Histones; Humans; Liver; Lysine; Methylation; Mice; Phylogeny; Regulatory Elements, Transcriptional; T-Lymphocytes; Transcription Factors; Transcription Initiation Site

2009
The cytoplasm of mouse germinal vesicle stage oocytes can enhance somatic cell nuclear reprogramming.
    Development (Cambridge, England), 2008, Volume: 135, Issue:23

    Topics: Acetylation; Animals; Blastocyst; Cell Extracts; Cellular Reprogramming; Chromosomes, Mammalian; Cloning, Organism; Culture Media; Cytoplasm; Embryo, Mammalian; Embryonic Stem Cells; Female; Gene Expression Regulation, Developmental; Histones; Lamin Type A; Lysine; Methylation; Mice; Octamer Transcription Factor-3; Oocytes

2008
Monomethylation of lysine 20 on histone H4 facilitates chromatin maturation.
    Molecular and cellular biology, 2009, Volume: 29, Issue:1

    Topics: Acetylation; Animals; Cell Extracts; Chromatin; Chromatin Assembly and Disassembly; Drosophila melanogaster; Drosophila Proteins; Histone-Lysine N-Methyltransferase; Histones; Lysine; Methylation; Nucleosomes; Peptides; Protein Binding; S-Adenosylhomocysteine; Substrate Specificity

2009
Genomic loss of microRNA-101 leads to overexpression of histone methyltransferase EZH2 in cancer.
    Science (New York, N.Y.), 2008, Dec-12, Volume: 322, Issue:5908

    Topics: 3' Untranslated Regions; Algorithms; Breast Neoplasms; Cell Line, Tumor; Disease Progression; DNA-Binding Proteins; Enhancer of Zeste Homolog 2 Protein; Epigenesis, Genetic; Female; Gene Expression Regulation, Neoplastic; Genome, Human; Histones; Humans; Lysine; Male; Methylation; MicroRNAs; Neoplasm Metastasis; Neoplasms; Polycomb Repressive Complex 2; Promoter Regions, Genetic; Prostatic Neoplasms; RNA, Small Interfering; Stomach Neoplasms; Transcription Factors

2008
Enhancer requirement for histone methylation linked with gene activation.
    The FEBS journal, 2008, Volume: 275, Issue:23

    Topics: Binding Sites; Chromatin Immunoprecipitation; Enhancer Elements, Genetic; Histones; Humans; K562 Cells; Lysine; Methylation; Mutation; NF-E2 Transcription Factor, p45 Subunit; Nucleosomes

2008
Expression of histone H3 tails with combinatorial lysine modifications under the reprogrammed genetic code for the investigation on epigenetic markers.
    Chemistry & biology, 2008, Nov-24, Volume: 15, Issue:11

    Topics: Acetylation; Amino Acid Sequence; Base Sequence; Biomarkers; Chromobox Protein Homolog 5; Chromosomal Proteins, Non-Histone; Epigenesis, Genetic; Histones; Humans; Lysine; Methylation; Molecular Sequence Data; Peptides; Protein Biosynthesis; RNA, Messenger; Substrate Specificity

2008
EZH1 mediates methylation on histone H3 lysine 27 and complements EZH2 in maintaining stem cell identity and executing pluripotency.
    Molecular cell, 2008, Nov-21, Volume: 32, Issue:4

    Topics: Animals; Cell Differentiation; Cell Line; DNA-Binding Proteins; Enhancer of Zeste Homolog 2 Protein; Genes, Regulator; Histone-Lysine N-Methyltransferase; Histones; Lysine; Methylation; Mice; Models, Biological; Polycomb Repressive Complex 2; Stem Cells; Transcription Factors

2008
H3K27me3 forms BLOCs over silent genes and intergenic regions and specifies a histone banding pattern on a mouse autosomal chromosome.
    Genome research, 2009, Volume: 19, Issue:2

    Topics: Algorithms; Animals; Chromatin Immunoprecipitation; Chromosome Banding; Chromosomes, Mammalian; DNA, Intergenic; Gene Silencing; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Histones; Lysine; Methylation; Mice; Models, Biological; Protein Methyltransferases; Protein Multimerization; Protein Processing, Post-Translational; Substrate Specificity

2009
Stimulating conversations between HP1a and histone demethylase dKDM4A.
    Molecular cell, 2008, Dec-05, Volume: 32, Issue:5

    Topics: Animals; Chromobox Protein Homolog 5; Chromosomal Proteins, Non-Histone; Drosophila melanogaster; Histones; Lysine; Methylation; Models, Biological; Oxidoreductases, N-Demethylating; Protein Structure, Tertiary

2008
A ncRNA modulates histone modification and mRNA induction in the yeast GAL gene cluster.
    Molecular cell, 2008, Dec-05, Volume: 32, Issue:5

    Topics: Acetyltransferases; Chromatin; DNA-Binding Proteins; Gene Expression Regulation, Fungal; Genes, Fungal; Glucose; Histones; Lysine; Methylation; Models, Biological; Multigene Family; Protein Processing, Post-Translational; Repressor Proteins; RNA, Messenger; RNA, Untranslated; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins; Transcription Factors; Transcription, Genetic

2008
Heterochromatin protein 1a stimulates histone H3 lysine 36 demethylation by the Drosophila KDM4A demethylase.
    Molecular cell, 2008, Dec-05, Volume: 32, Issue:5

    Topics: Amino Acid Motifs; Animals; Chromobox Protein Homolog 5; Chromosomal Proteins, Non-Histone; Consensus Sequence; Dimerization; Drosophila melanogaster; Drosophila Proteins; Histone Demethylases; Histones; Larva; Lysine; Methylation; Oxidoreductases, N-Demethylating; Protein Binding; Protein Structure, Tertiary; Substrate Specificity

2008
CDYL bridges REST and histone methyltransferases for gene repression and suppression of cellular transformation.
    Molecular cell, 2008, Dec-05, Volume: 32, Issue:5

    Topics: Cell Transformation, Neoplastic; Co-Repressor Proteins; DNA-Binding Proteins; Down-Regulation; Epithelial Cells; HeLa Cells; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Histones; Humans; Hydro-Lyases; Lysine; Methylation; Multiprotein Complexes; Nerve Tissue Proteins; Oncogene Proteins, Viral; Papillomavirus E7 Proteins; Protein Binding; Protein Methyltransferases; Proteins; Proto-Oncogene Mas; Receptor, trkC; Repressor Proteins; RNA Interference; Transcription, Genetic

2008
Corepressive action of CBP on androgen receptor transactivation in pericentric heterochromatin in a Drosophila experimental model system.
    Molecular and cellular biology, 2009, Volume: 29, Issue:4

    Topics: Acetylation; Amino Acid Sequence; Animals; Catalytic Domain; Cell Line, Tumor; Chromosomal Position Effects; Conserved Sequence; CREB-Binding Protein; Drosophila melanogaster; Drosophila Proteins; Euchromatin; Heterochromatin; Histone Deacetylases; Histones; Humans; Lysine; Methylation; Models, Genetic; Molecular Sequence Data; Promoter Regions, Genetic; Receptors, Androgen; Repressor Proteins; Sirtuins; Transcriptional Activation

2009
Genome-wide histone methylation profile for heart failure.
    Genes to cells : devoted to molecular & cellular mechanisms, 2009, Volume: 14, Issue:1

    Topics: Aged; Animals; Calcium-Binding Proteins; Chromatin Immunoprecipitation; Chromosome Mapping; Cluster Analysis; Epigenesis, Genetic; Female; Gene Expression Regulation; Genome; Heart Failure; Histones; Humans; Lysine; Male; Membrane Proteins; Methylation; Middle Aged; Muscle Proteins; Myocardium; Protein Processing, Post-Translational; Rats; Rats, Inbred Dahl; RNA, Messenger

2009
Histone H3 lysine 4 trimethylation marks meiotic recombination initiation sites.
    The EMBO journal, 2009, Jan-21, Volume: 28, Issue:2

    Topics: DNA Breaks, Double-Stranded; DNA Repair; DNA-Binding Proteins; Gene Expression Regulation, Fungal; Histone-Lysine N-Methyltransferase; Histones; Lysine; Meiosis; Methylation; Recombination, Genetic; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins; Transcription Factors

2009
[5-aza-2'-deoxycytidine induces changes of histone H3-lysine 9 methylation in bladder tumor cells].
    Zhonghua yi xue za zhi, 2008, Aug-19, Volume: 88, Issue:32

    Topics: Antimetabolites, Antineoplastic; Azacitidine; Cell Line, Tumor; Cell Survival; Core Binding Factor Alpha 3 Subunit; Decitabine; DNA Methylation; Dose-Response Relationship, Drug; Histones; Humans; Lysine; Methylation; Promoter Regions, Genetic; Time Factors; Urinary Bladder Neoplasms

2008
Genetic and genomewide analysis of simultaneous mutations in acetylated and methylated lysine residues in histone H3 in Saccharomyces cerevisiae.
    Genetics, 2009, Volume: 181, Issue:2

    Topics: Acetylation; Gene Expression Profiling; Gene Expression Regulation, Fungal; Genome-Wide Association Study; Genome, Fungal; Histones; Lysine; Methylation; Mutagenesis, Site-Directed; Mutation; Oligonucleotide Array Sequence Analysis; Phenotype; RNA, Fungal; RNA, Messenger; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins; Telomere

2009
Proton affinity and zwitterion stability: new results from infrared spectroscopy and theory of cationized lysine and analogues in the gas phase.
    The journal of physical chemistry. A, 2009, Jan-15, Volume: 113, Issue:2

    Topics: Amines; Gases; Lysine; Metals, Alkali; Methylation; Photons; Protons; Quantum Theory; Spectrophotometry, Infrared

2009
Histone H3 lysine 36 dimethylation (H3K36me2) is sufficient to recruit the Rpd3s histone deacetylase complex and to repress spurious transcription.
    The Journal of biological chemistry, 2009, Mar-20, Volume: 284, Issue:12

    Topics: Animals; Genome, Human; HeLa Cells; Histone Deacetylase 2; Histone Deacetylases; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation; Multienzyme Complexes; Mutation; Repressor Proteins; Transcription, Genetic; Xenopus

2009
Histone H3 Lys79 methylation is required for efficient nucleotide excision repair in a silenced locus of Saccharomyces cerevisiae.
    Nucleic acids research, 2009, Volume: 37, Issue:5

    Topics: Chromatin; DNA Repair; Gene Deletion; Gene Expression Regulation, Fungal; Gene Silencing; Genes, Mating Type, Fungal; Histone Deacetylases; Histones; Lysine; Methylation; Micrococcal Nuclease; Saccharomyces cerevisiae; Silent Information Regulator Proteins, Saccharomyces cerevisiae; Sirtuin 2; Sirtuins; Ultraviolet Rays

2009
Differential chromatin marking of introns and expressed exons by H3K36me3.
    Nature genetics, 2009, Volume: 41, Issue:3

    Topics: Alternative Splicing; Animals; Binding Sites; Caenorhabditis elegans; Chromatin; Chromosome Mapping; Exons; Gene Expression Regulation; Gene Silencing; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Histones; Introns; Lysine; Methylation; Open Reading Frames; Protein Binding; Protein Methyltransferases; Transcription, Genetic

2009
Lysine methylation of nuclear co-repressor receptor interacting protein 140.
    Journal of proteome research, 2009, Volume: 8, Issue:3

    Topics: 3T3-L1 Cells; Adaptor Proteins, Signal Transducing; Adipocytes; Amino Acid Sequence; Animals; Arginine; Cell Differentiation; Lysine; Methylation; Mice; Molecular Sequence Data; Mutation; Nuclear Proteins; Nuclear Receptor Interacting Protein 1; Protein Processing, Post-Translational

2009
Monomethylation of histone H4-lysine 20 is involved in chromosome structure and stability and is essential for mouse development.
    Molecular and cellular biology, 2009, Volume: 29, Issue:8

    Topics: Animals; Cell Cycle; Chromosomal Instability; Chromosome Structures; DNA Damage; Embryonic Stem Cells; Histone-Lysine N-Methyltransferase; Histones; Interphase; Lysine; Methylation; Mice; Mice, Mutant Strains

2009
Methylation-state-specific recognition of histones by the MBT repeat protein L3MBTL2.
    Nucleic acids research, 2009, Volume: 37, Issue:7

    Topics: Histones; Humans; Lysine; Methylation; Models, Molecular; Nuclear Proteins; Peptides; Protein Binding; Repetitive Sequences, Amino Acid; Repressor Proteins; Transcription Factors

2009
Processing the H3K36me3 signature.
    Nature genetics, 2009, Volume: 41, Issue:3

    Topics: Animals; Caenorhabditis elegans; Gene Expression Profiling; Gene Expression Regulation; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Metabolic Networks and Pathways; Methylation; Models, Biological; Protein Methyltransferases; Protein Processing, Post-Translational

2009
Regulation of Set9-mediated H4K20 methylation by a PWWP domain protein.
    Molecular cell, 2009, Feb-27, Volume: 33, Issue:4

    Topics: Amino Acid Sequence; Chromatin; Chromosomal Proteins, Non-Histone; DNA Damage; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Histones; Lysine; Mass Spectrometry; Methylation; Molecular Sequence Data; Mutation; Protein Methyltransferases; Protein Structure, Tertiary; Schizosaccharomyces; Schizosaccharomyces pombe Proteins

2009
Negative regulation of NF-kappaB action by Set9-mediated lysine methylation of the RelA subunit.
    The EMBO journal, 2009, Apr-22, Volume: 28, Issue:8

    Topics: Amino Acid Sequence; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Humans; Lysine; Methylation; Molecular Sequence Data; NF-kappa B; Promoter Regions, Genetic; Protein Methyltransferases; Protein Subunits; Recombinant Fusion Proteins; RNA Interference; Transcription Factor RelA; Transcriptional Activation; Tumor Necrosis Factor-alpha

2009
Genome-wide profiling of histone h3 lysine 4 and lysine 27 trimethylation reveals an epigenetic signature in prostate carcinogenesis.
    PloS one, 2009, Volume: 4, Issue:3

    Topics: Epigenesis, Genetic; Gene Expression Regulation, Neoplastic; Genome, Human; Histones; Humans; Immunoprecipitation; Lysine; Male; Methylation; MicroRNAs; Oligonucleotide Array Sequence Analysis; Prostatic Neoplasms

2009
Incorporating structural characteristics for identification of protein methylation sites.
    Journal of computational chemistry, 2009, Jul-15, Volume: 30, Issue:9

    Topics: Arginine; Asparagine; Binding Sites; Computer Simulation; Glutamic Acid; Lysine; Methylation; Protein Conformation; Proteins; Surface Properties

2009
MLL5, a trithorax homolog, indirectly regulates H3K4 methylation, represses cyclin A2 expression, and promotes myogenic differentiation.
    Proceedings of the National Academy of Sciences of the United States of America, 2009, Mar-24, Volume: 106, Issue:12

    Topics: Animals; Cell Differentiation; Chromosomal Proteins, Non-Histone; Cyclin A; Cyclin A2; Drosophila Proteins; G1 Phase; Gene Knockdown Techniques; Histone-Lysine N-Methyltransferase; Histones; Lysine; Methylation; Mice; Myoblasts; Protein Binding; Repressor Proteins; Response Elements; RNA Interference; S Phase; Sequence Homology, Amino Acid; Transcription Factors; Transcription, Genetic

2009
Plasmodium falciparum heterochromatin protein 1 binds to tri-methylated histone 3 lysine 9 and is linked to mutually exclusive expression of var genes.
    Nucleic acids research, 2009, Volume: 37, Issue:8

    Topics: Amino Acid Sequence; Animals; Cell Nucleus; Chromobox Protein Homolog 5; Chromosomal Proteins, Non-Histone; Gene Expression Regulation; Histones; Lysine; Methylation; Models, Molecular; Molecular Sequence Data; Peptides; Plasmodium falciparum; Protein Multimerization; Protein Structure, Tertiary; Protozoan Proteins; Repetitive Sequences, Nucleic Acid; Telomere; Virulence Factors

2009
Functional conservation of Asxl2, a murine homolog for the Drosophila enhancer of trithorax and polycomb group gene Asx.
    PloS one, 2009, Volume: 4, Issue:3

    Topics: Animals; Animals, Newborn; Blotting, Western; Chromosomal Proteins, Non-Histone; Drosophila melanogaster; Drosophila Proteins; Embryo, Mammalian; Gene Transfer Techniques; Heart; Histones; Lysine; Methylation; Mice; Polycomb-Group Proteins; Repressor Proteins; Reverse Transcriptase Polymerase Chain Reaction; Skeleton

2009
Distinct DNA methylation patterns characterize differentiated human embryonic stem cells and developing human fetal liver.
    Genome research, 2009, Volume: 19, Issue:6

    Topics: Binding Sites; Cell Differentiation; Cell Line; Cells, Cultured; Chromosome Mapping; Cluster Analysis; CpG Islands; DNA Methylation; Embryonic Stem Cells; Gene Expression Profiling; Genome, Human; Histones; Humans; Liver; Lysine; Methylation; Promoter Regions, Genetic; Sequence Analysis, DNA

2009
Histone H3 lysine 27 trimethylation in adult differentiated colon associated to cancer DNA hypermethylation.
    Epigenetics, 2009, Feb-16, Volume: 4, Issue:2

    Topics: Adult; Colon; Colonic Neoplasms; DNA Methylation; Embryonic Stem Cells; Histones; Humans; Lysine; Methylation; Polycomb-Group Proteins; Repressor Proteins

2009
Differences in lysine pKa values may be used to improve NMR signal dispersion in reductively methylated proteins.
    Journal of biomolecular NMR, 2009, Volume: 43, Issue:4

    Topics: Calcium; Calmodulin; Carbon Isotopes; Glutathione Transferase; Hydrogen-Ion Concentration; Isoelectric Point; Lysine; Methylation; Models, Molecular; Muramidase; Nuclear Magnetic Resonance, Biomolecular; Protein Conformation; Proteins; Troponin C

2009
Regulation of DNMT1 stability through SET7-mediated lysine methylation in mammalian cells.
    Proceedings of the National Academy of Sciences of the United States of America, 2009, Mar-31, Volume: 106, Issue:13

    Topics: Animals; Cell Cycle; Chlorocebus aethiops; COS Cells; DNA (Cytosine-5-)-Methyltransferase 1; DNA (Cytosine-5-)-Methyltransferases; Enzyme Stability; HeLa Cells; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Humans; Lysine; Methylation; RNA, Small Interfering; Transfection

2009
Computational identification of protein methylation sites through bi-profile Bayes feature extraction.
    PloS one, 2009, Volume: 4, Issue:3

    Topics: Arginine; Bayes Theorem; Lysine; Methylation; Proteins; Sensitivity and Specificity

2009
Aberrant histone modifications at the thyrotropin-releasing hormone gene in resistance to thyroid hormone: analysis of F455S mutant thyroid hormone receptor.
    Endocrinology, 2009, Volume: 150, Issue:7

    Topics: Acetylation; Deoxyadenosines; Histone Deacetylase Inhibitors; Histones; Humans; Lysine; Methylation; Receptors, Thyroid Hormone; Thionucleosides; Thyroid Hormone Receptors beta; Thyroid Hormone Resistance Syndrome; Thyrotropin-Releasing Hormone

2009
Methyl group migration during the fragmentation of singly charged ions of trimethyllysine-containing peptides: precaution of using MS/MS of singly charged ions for interrogating peptide methylation.
    Journal of the American Society for Mass Spectrometry, 2009, Volume: 20, Issue:6

    Topics: Arginine; Cell Line, Tumor; Histones; Humans; Lysine; Methylation; Peptide Fragments; Proline; Saccharomyces cerevisiae Proteins; Spectrometry, Mass, Electrospray Ionization; Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization

2009
Insulin induced alteration in post-translational modifications of histone H3 under a hyperglycemic condition in L6 skeletal muscle myoblasts.
    Biochimica et biophysica acta, 2009, Volume: 1792, Issue:6

    Topics: Acetylation; Chromatin Assembly and Disassembly; DNA Methylation; Enzyme Activation; Glucose; Histones; Insulin; Lysine; Methylation; Myoblasts, Skeletal; Okadaic Acid; Phosphorylation; Phosphotransferases; Protein Processing, Post-Translational; Reactive Oxygen Species

2009
PRIP promotes tumor formation through enhancing serum-responsive factor-mediated FOS expression.
    The Journal of biological chemistry, 2009, May-22, Volume: 284, Issue:21

    Topics: Animals; Cell Line, Tumor; Cell Proliferation; Female; Gene Expression Regulation, Neoplastic; Histones; Humans; Intracellular Signaling Peptides and Proteins; Lysine; Mammary Neoplasms, Animal; Methylation; Mice; Mice, Knockout; Neoplasms; Nuclear Receptor Coactivators; Promoter Regions, Genetic; Protein Binding; Proto-Oncogene Proteins c-fos; ras Proteins; Serum Response Factor

2009
Heterogeneous nuclear ribonucleoprotein L Is a subunit of human KMT3a/Set2 complex required for H3 Lys-36 trimethylation activity in vivo.
    The Journal of biological chemistry, 2009, Jun-05, Volume: 284, Issue:23

    Topics: Cell Line; Heterogeneous-Nuclear Ribonucleoprotein L; Histone-Lysine N-Methyltransferase; Histones; Humans; Kidney; Lysine; Methylation; Methyltransferases; Peptide Fragments; Protein Subunits; Ribonucleases; Transfection

2009
Preparation of recombinant peptides with site- and degree-specific lysine (13)C-methylation.
    Biochemistry, 2009, May-12, Volume: 48, Issue:18

    Topics: Carbon Isotopes; Chromatography, Liquid; Lysine; Methylation; Nuclear Magnetic Resonance, Biomolecular; Peptides; Recombinant Proteins

2009
Multiple lysine methylation of PCAF by Set9 methyltransferase.
    Biochemical and biophysical research communications, 2009, Mar-27, Volume: 381, Issue:1

    Topics: Amino Acid Sequence; Cell Line; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Humans; Lysine; Methylation; Molecular Sequence Data; p300-CBP Transcription Factors; Substrate Specificity

2009
Functional connection between histone acetyltransferase Gcn5p and methyltransferase Hmt1p.
    Biochimica et biophysica acta, 2009, Volume: 1789, Issue:5

    Topics: Acetylation; Arginine; Gene Regulatory Networks; Histone Acetyltransferases; Histones; Lysine; Methylation; Mutation; Protein Binding; Protein-Arginine N-Methyltransferases; Recombinant Proteins; Repressor Proteins; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins

2009
High-affinity binding of Chp1 chromodomain to K9 methylated histone H3 is required to establish centromeric heterochromatin.
    Molecular cell, 2009, Apr-10, Volume: 34, Issue:1

    Topics: Amino Acid Sequence; Argonaute Proteins; Binding Sites; Cell Cycle Proteins; Centromere; Chromosomal Proteins, Non-Histone; Crystallography, X-Ray; Heterochromatin; Histones; Lysine; Methylation; Models, Molecular; Molecular Sequence Data; Mutation; Protein Structure, Tertiary; RNA-Binding Proteins; RNA, Small Interfering; Schizosaccharomyces pombe Proteins

2009
Differential epigenetic modifications of histones at the myosin heavy chain genes in fast and slow skeletal muscle fibers and in response to muscle unloading.
    American journal of physiology. Cell physiology, 2009, Volume: 297, Issue:1

    Topics: Acetylation; Actins; Animals; Chromatin Assembly and Disassembly; Chromatin Immunoprecipitation; Epigenesis, Genetic; Female; Gene Expression Regulation; Hindlimb Suspension; Histones; Lysine; Methylation; Models, Animal; Muscle Fibers, Fast-Twitch; Muscle Fibers, Slow-Twitch; Myosin Heavy Chains; Phenotype; Protein Isoforms; Protein Processing, Post-Translational; Rats; Rats, Sprague-Dawley; RNA Precursors; RNA, Messenger; Transcription, Genetic

2009
Effects of nickel, chromate, and arsenite on histone 3 lysine methylation.
    Toxicology and applied pharmacology, 2009, Apr-01, Volume: 236, Issue:1

    Topics: Arsenites; Cell Line, Tumor; Cell Transformation, Neoplastic; Chromates; Dose-Response Relationship, Drug; Gene Expression Regulation, Neoplastic; Histones; Humans; Lung Neoplasms; Lysine; Methylation; Nickel; Potassium Compounds; Protein Processing, Post-Translational; Sodium Compounds; Time Factors

2009
Epigenetic inheritance through self-recruitment of the polycomb repressive complex 2.
    Epigenetics, 2009, Apr-01, Volume: 4, Issue:3

    Topics: Animals; Drosophila melanogaster; Epigenesis, Genetic; Evolution, Molecular; Humans; Lysine; Methylation; Polycomb-Group Proteins; Protein Binding; Repressor Proteins

2009
An alpha motif at Tas3 C terminus mediates RITS cis spreading and promotes heterochromatic gene silencing.
    Molecular cell, 2009, Apr-24, Volume: 34, Issue:2

    Topics: Amino Acid Motifs; Carrier Proteins; Centromere; Chromatin Assembly and Disassembly; Chromatin Immunoprecipitation; Chromatography, Gel; Crystallography, X-Ray; Gene Silencing; Heterochromatin; Histones; Lysine; Methylation; Models, Molecular; Mutagenesis, Site-Directed; Protein Structure, Tertiary; RNA-Induced Silencing Complex; RNA, Small Interfering; Schizosaccharomyces; Schizosaccharomyces pombe Proteins

2009
Changes in histone methylation during human oocyte maturation and IVF- or ICSI-derived embryo development.
    Fertility and sterility, 2010, Mar-15, Volume: 93, Issue:5

    Topics: Arginine; Blastocyst; Cells, Cultured; Embryo Culture Techniques; Female; Fertilization in Vitro; Fluorescent Antibody Technique; Histones; Humans; Lysine; Male; Meiosis; Methylation; Microscopy, Confocal; Oocytes; Protein Processing, Post-Translational; Sperm Injections, Intracytoplasmic; Zygote

2010
LSD1 demethylates histone and non-histone proteins.
    Epigenetics, 2009, Apr-01, Volume: 4, Issue:3

    Topics: Animals; Histone Demethylases; Histones; Humans; Lysine; Methylation; Mice; Oxidoreductases, N-Demethylating; Protein Processing, Post-Translational; Proteins

2009
Regulation of H3K4 trimethylation via Cps40 (Spp1) of COMPASS is monoubiquitination independent: implication for a Phe/Tyr switch by the catalytic domain of Set1.
    Molecular and cellular biology, 2009, Volume: 29, Issue:13

    Topics: DNA-Binding Proteins; Histone-Lysine N-Methyltransferase; Histones; Humans; Infant; Lysine; Methylation; Models, Molecular; Phenylalanine; Protein Structure, Tertiary; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins; Tyrosine; Ubiquitination

2009
Novel epigenetic regulation of skeletal muscle myosin heavy chain genes. Focus on "Differential epigenetic modifications of histones at the myosin heavy chain genes in fast and slow skeletal muscle fibers and in response to muscle unloading".
    American journal of physiology. Cell physiology, 2009, Volume: 297, Issue:1

    Topics: Acetylation; Actins; Animals; Chromatin Assembly and Disassembly; Epigenesis, Genetic; Gene Expression Regulation; Hindlimb Suspension; Histones; Lysine; Methylation; Models, Animal; Muscle Fibers, Fast-Twitch; Muscle Fibers, Slow-Twitch; Myosin Heavy Chains; Phenotype; Protein Isoforms; Protein Processing, Post-Translational; Rats; Rats, Sprague-Dawley; RNA Precursors; RNA, Messenger; Transcription, Genetic

2009
A novel mammalian flavin-dependent histone demethylase.
    The Journal of biological chemistry, 2009, Jun-26, Volume: 284, Issue:26

    Topics: Amino Acid Sequence; Animals; Chromatin; Cloning, Molecular; Epigenesis, Genetic; Flavins; Histones; Hydrogen-Ion Concentration; Kinetics; Lysine; Methylation; Mice; Molecular Sequence Data; Oxidoreductases, N-Demethylating; Sequence Homology, Amino Acid; Substrate Specificity; Zinc

2009
H3 lysine 4 di- and tri-methylation deposited by cryptic transcription attenuates promoter activation.
    The EMBO journal, 2009, Jun-17, Volume: 28, Issue:12

    Topics: Cytoplasm; Gene Expression Regulation, Fungal; Histone Deacetylases; Histones; Lysine; Methylation; Promoter Regions, Genetic; Protein Binding; Repressor Proteins; RNA Polymerase II; RNA Stability; RNA, Messenger; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins; Signal Transduction; Transcription, Genetic

2009
Genetically Derepressed Nucleoplasmic Stellate Protein in Spermatocytes of D. melanogaster interacts with the catalytic subunit of protein kinase 2 and carries histone-like lysine-methylated mark.
    Journal of molecular biology, 2009, Jun-26, Volume: 389, Issue:5

    Topics: Animals; Casein Kinase II; Catalytic Domain; Cell Fractionation; Cell Nucleus; Drosophila melanogaster; Drosophila Proteins; Immunoprecipitation; Insect Proteins; Lysine; Male; Methylation; Microscopy, Fluorescence; Protein Binding; Protein Interaction Mapping; Protein Kinases; Spermatocytes

2009
Haematopoietic malignancies caused by dysregulation of a chromatin-binding PHD finger.
    Nature, 2009, Jun-11, Volume: 459, Issue:7248

    Topics: Amino Acid Motifs; Animals; Cell Transformation, Neoplastic; Cells, Cultured; Chromatin; Epigenesis, Genetic; Gene Expression Regulation, Developmental; Genes, Homeobox; Hematologic Neoplasms; Hematopoiesis; Hematopoietic Stem Cells; Histones; Humans; Intracellular Signaling Peptides and Proteins; Lysine; Magnetic Resonance Spectroscopy; Methylation; Mice; Models, Molecular; Nuclear Pore Complex Proteins; Oncogene Proteins, Fusion; Protein Binding; Protein Conformation; Retinoblastoma-Binding Protein 2; Transcription, Genetic; Tumor Suppressor Proteins

2009
Modifications of histone H3 at lysine 9 on the adiponectin gene in 3T3-L1 adipocytes.
    Journal of nutritional science and vitaminology, 2009, Volume: 55, Issue:2

    Topics: 3T3-L1 Cells; Acetylation; Adipocytes; Adiponectin; Animals; Gene Expression; Gene Expression Regulation; Histones; Insulin Resistance; Lysine; Methylation; Mice; Protein Processing, Post-Translational; Transcriptional Activation; Tumor Necrosis Factor-alpha

2009
Visions: the art of science.
    Molecular reproduction and development, 2009, Volume: 76, Issue:7

    Topics: Animals; Biomarkers; Chromatin Assembly and Disassembly; Lysine; Male; Methylation; Mice; Phthalic Acids; Proto-Oncogene Proteins c-akt; Seminiferous Epithelium; Stress, Physiological

2009
Epigenetic marks for chromosome imprinting during spermatogenesis in coccids.
    Chromosoma, 2009, Volume: 118, Issue:4

    Topics: Acetylation; Animals; Cell Nucleus; Chromatin Assembly and Disassembly; Epigenesis, Genetic; Female; Genomic Imprinting; Hemiptera; Heterochromatin; Histones; Immunohistochemistry; Insect Proteins; Lysine; Male; Methylation; Microscopy, Fluorescence; Nuclear Proteins; Spermatogenesis

2009
Dynamic chromatin remodeling events in hippocampal neurons are associated with NMDA receptor-mediated activation of Bdnf gene promoter 1.
    Journal of neurochemistry, 2009, Volume: 109, Issue:5

    Topics: Acetylation; Analysis of Variance; Animals; Azacitidine; Brain-Derived Neurotrophic Factor; Chromatin Assembly and Disassembly; Chromatin Immunoprecipitation; DNA-Binding Proteins; Embryo, Mammalian; Enzyme Inhibitors; Exons; Hippocampus; Histone Deacetylase 1; Histone Deacetylases; Histones; Hydroxamic Acids; In Vitro Techniques; Lysine; Methyl-CpG-Binding Protein 2; Methylation; N-Methylaspartate; Neurons; Promoter Regions, Genetic; Rats; Rats, Sprague-Dawley; Receptors, N-Methyl-D-Aspartate; Repressor Proteins; RNA, Messenger; Time Factors; Transcription Factors

2009
A histone H3 lysine 36 trimethyltransferase links Nkx2-5 to Wolf-Hirschhorn syndrome.
    Nature, 2009, Jul-09, Volume: 460, Issue:7252

    Topics: Animals; DNA-Binding Proteins; Gene Expression Regulation; Histone-Lysine N-Methyltransferase; Histones; Homeobox Protein Nkx-2.5; Homeodomain Proteins; Lysine; Methylation; Mice; Mice, Inbred C57BL; Nanog Homeobox Protein; Protein Binding; Repressor Proteins; Transcription Factors; Transcription, Genetic; Wolf-Hirschhorn Syndrome

2009
Pygo2 expands mammary progenitor cells by facilitating histone H3 K4 methylation.
    The Journal of cell biology, 2009, Jun-01, Volume: 185, Issue:5

    Topics: Animals; beta Catenin; Cell Cycle; Cell Proliferation; Gene Expression Regulation; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Histones; Humans; Intracellular Signaling Peptides and Proteins; Lysine; Mammary Glands, Animal; Methylation; Mice; Phenotype; Stem Cells; Wnt Proteins

2009
Sirtuin 1 functionally and physically interacts with disruptor of telomeric silencing-1 to regulate alpha-ENaC transcription in collecting duct.
    The Journal of biological chemistry, 2009, Jul-31, Volume: 284, Issue:31

    Topics: Aldosterone; Animals; Chromatin; Epithelial Sodium Channels; Gene Expression Regulation; Gene Knockdown Techniques; Histone Deacetylases; Histone-Lysine N-Methyltransferase; Histones; Immunoprecipitation; Kidney Tubules, Collecting; Lysine; Methylation; Methyltransferases; Mice; Promoter Regions, Genetic; Protein Binding; Receptors, Mineralocorticoid; RNA, Messenger; Sirtuin 1; Sirtuins; Transcription, Genetic

2009
Molecular recognition of histone lysine methylation by the Polycomb group repressor dSfmbt.
    The EMBO journal, 2009, Jul-08, Volume: 28, Issue:13

    Topics: Amino Acid Sequence; Animals; Binding Sites; Crystallography, X-Ray; Drosophila melanogaster; Drosophila Proteins; Histones; Humans; Lysine; Methylation; Models, Molecular; Molecular Sequence Data; Point Mutation; Polycomb Repressive Complex 1; Polycomb-Group Proteins; Protein Binding; Protein Structure, Tertiary; Repressor Proteins; Sequence Alignment

2009
The HP1alpha-CAF1-SetDB1-containing complex provides H3K9me1 for Suv39-mediated K9me3 in pericentric heterochromatin.
    EMBO reports, 2009, Volume: 10, Issue:7

    Topics: Animals; Chromatin Assembly Factor-1; Chromobox Protein Homolog 5; Chromosomal Proteins, Non-Histone; DNA-Binding Proteins; HeLa Cells; Heterochromatin; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation; Mice; Models, Biological; Protein Methyltransferases; Protein Transport; Repressor Proteins; S Phase

2009
Lung cancer-associated JmjC domain protein mdig suppresses formation of tri-methyl lysine 9 of histone H3.
    Cell cycle (Georgetown, Tex.), 2009, Jul-01, Volume: 8, Issue:13

    Topics: Amino Acid Sequence; Chromatin Immunoprecipitation; Dioxygenases; F-Box Proteins; Histone Demethylases; Histones; Humans; Jumonji Domain-Containing Histone Demethylases; Lung Neoplasms; Lysine; Methylation; Molecular Sequence Data; Nuclear Proteins; Oxidoreductases, N-Demethylating; Promoter Regions, Genetic; Protein Interaction Domains and Motifs; RNA Polymerase I; RNA, Ribosomal; RNA, Small Interfering; Sequence Alignment

2009
Genome-wide analysis of mono-, di- and trimethylation of histone H3 lysine 4 in Arabidopsis thaliana.
    Genome biology, 2009, Volume: 10, Issue:6

    Topics: Arabidopsis; Arabidopsis Proteins; Cytosine; DNA (Cytosine-5-)-Methyltransferases; DNA Methylation; Gene Expression Profiling; Gene Expression Regulation, Plant; Genes, Plant; Genome, Plant; Histones; Lysine; Methylation; Transcription, Genetic

2009
ncRNA transcription makes its mark.
    The EMBO journal, 2009, Jun-17, Volume: 28, Issue:12

    Topics: Histones; Lysine; Methylation; Promoter Regions, Genetic; RNA, Untranslated; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins; Transcription, Genetic

2009
Targeted metabolomic evaluation of arginine methylation and cardiovascular risks: potential mechanisms beyond nitric oxide synthase inhibition.
    Arteriosclerosis, thrombosis, and vascular biology, 2009, Volume: 29, Issue:9

    Topics: Aged; Arginine; Biomarkers; C-Reactive Protein; Cardiovascular Diseases; Chromatography, High Pressure Liquid; Citrulline; Coronary Artery Disease; Creatinine; Female; Humans; Lysine; Male; Metabolomics; Methylation; Middle Aged; Nitric Oxide Synthase; Odds Ratio; omega-N-Methylarginine; Ornithine; Prognosis; Prospective Studies; Protein Processing, Post-Translational; Risk Assessment; Risk Factors; Spectrometry, Mass, Electrospray Ionization; Tandem Mass Spectrometry; Time Factors

2009
Epigenetic profiling at mouse imprinted gene clusters reveals novel epigenetic and genetic features at differentially methylated regions.
    Genome research, 2009, Volume: 19, Issue:8

    Topics: Animals; Chromatin Immunoprecipitation; Chromosome Mapping; Chromosomes, Mammalian; CpG Islands; DNA Methylation; Epigenesis, Genetic; Female; Genome-Wide Association Study; Genomic Imprinting; Histones; Humans; Lysine; Male; Methylation; Mice; Multigene Family; Repetitive Sequences, Nucleic Acid; RNA, Long Noncoding; RNA, Untranslated; Short Interspersed Nucleotide Elements; Spermatozoa

2009
Control of alternative splicing through siRNA-mediated transcriptional gene silencing.
    Nature structural & molecular biology, 2009, Volume: 16, Issue:7

    Topics: Alternative Splicing; Animals; Argonaute Proteins; Base Sequence; Carcinoma, Hepatocellular; Chromobox Protein Homolog 5; Epigenesis, Genetic; Eukaryotic Initiation Factors; Exons; Fibronectins; Gene Knockdown Techniques; HeLa Cells; Heterochromatin; Histones; Humans; Liver Neoplasms; Lysine; Male; Methylation; Mice; Oligonucleotides, Antisense; Promoter Regions, Genetic; Ribonuclease III; RNA Interference; RNA Polymerase II; RNA, Small Interfering; Transcription, Genetic

2009
Epigenetics of human T cells during the G0-->G1 transition.
    Genome research, 2009, Volume: 19, Issue:8

    Topics: Cells, Cultured; Chromatin Immunoprecipitation; CpG Islands; DNA Methylation; Epigenesis, Genetic; G1 Phase; Gene Expression Profiling; Genome-Wide Association Study; Histones; Humans; Lysine; Methylation; Nucleosomes; Promoter Regions, Genetic; Protein Binding; Resting Phase, Cell Cycle; T-Lymphocytes; Transcription Initiation Site; Transcription, Genetic

2009
Mapping of lysine monomethylation of linker histones in human breast and its cancer.
    Journal of proteome research, 2009, Volume: 8, Issue:9

    Topics: Aged; Breast; Breast Neoplasms; Female; Histones; Humans; Linear Models; Lysine; Methylation; Middle Aged; Peptide Fragments; Peptide Mapping; Proteomics; Tandem Mass Spectrometry

2009
On the mechanism of multiple lysine methylation by the human mixed lineage leukemia protein-1 (MLL1) core complex.
    The Journal of biological chemistry, 2009, Sep-04, Volume: 284, Issue:36

    Topics: DNA-Binding Proteins; Gene Rearrangement; Histone-Lysine N-Methyltransferase; Histones; Humans; Intracellular Signaling Peptides and Proteins; Leukemia; Lysine; Methylation; Multiprotein Complexes; Myeloid-Lymphoid Leukemia Protein; Nuclear Proteins; Retinol-Binding Proteins, Cellular; Transcription Factors

2009
Synaptonemal complex assembly and H3K4Me3 demethylation determine DIDO3 localization in meiosis.
    Chromosoma, 2009, Volume: 118, Issue:5

    Topics: Amino Acid Sequence; Animals; DNA-Binding Proteins; Epigenesis, Genetic; Histones; Lysine; Male; Meiosis; Methylation; Mice; Spermatocytes; Synaptonemal Complex; Transcription Factors

2009
Degrees make all the difference: the multifunctionality of histone H4 lysine 20 methylation.
    Epigenetics, 2009, Jul-01, Volume: 4, Issue:5

    Topics: Animals; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation

2009
WDR5, a complexed protein.
    Nature structural & molecular biology, 2009, Volume: 16, Issue:7

    Topics: Amino Acid Motifs; Histone-Lysine N-Methyltransferase; Histones; Humans; Intracellular Signaling Peptides and Proteins; Lysine; Methylation; Models, Molecular; Multiprotein Complexes; Myeloid-Lymphoid Leukemia Protein; Protein Conformation; Protein Subunits; Saccharomyces cerevisiae Proteins

2009
High-resolution analysis of epigenetic changes associated with X inactivation.
    Genome research, 2009, Volume: 19, Issue:8

    Topics: Animals; Cell Differentiation; Cells, Cultured; Chromatin Immunoprecipitation; Embryonic Stem Cells; Epigenesis, Genetic; Female; Gene Expression Profiling; Genome-Wide Association Study; Histones; Kinetics; Lysine; Male; Methylation; Mice; Mice, Inbred C3H; Oligonucleotide Array Sequence Analysis; Polymorphism, Single Nucleotide; Repetitive Sequences, Nucleic Acid; Reverse Transcriptase Polymerase Chain Reaction; RNA, Long Noncoding; RNA, Untranslated; Transcription, Genetic; X Chromosome; X Chromosome Inactivation

2009
The multiple endocrine neoplasia type 1 (MEN1) tumor suppressor regulates peroxisome proliferator-activated receptor gamma-dependent adipocyte differentiation.
    Molecular and cellular biology, 2009, Volume: 29, Issue:18

    Topics: 3T3-L1 Cells; Adipocytes; Animals; Cell Differentiation; Fatty Acid-Binding Proteins; Gene Expression Regulation, Neoplastic; Gene Knockdown Techniques; Histones; Humans; Ligands; Lysine; Methylation; Mice; PPAR gamma; Protein Binding; Protein Structure, Tertiary; Proto-Oncogene Proteins; Transcription, Genetic

2009
Cooperation between the INO80 complex and histone chaperones determines adaptation of stress gene transcription in the yeast Saccharomyces cerevisiae.
    Molecular and cellular biology, 2009, Volume: 29, Issue:18

    Topics: Adaptation, Biological; Copper; Gene Expression Regulation, Fungal; Histones; Lysine; Methylation; Molecular Chaperones; Mutation; Osmosis; Phosphorylation; Protein Binding; RNA Polymerase II; RNA, Messenger; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins; Stress, Physiological; Transcription, Genetic

2009
Mass spectrometry analysis of the variants of histone H3 and H4 of soybean and their post-translational modifications.
    BMC plant biology, 2009, Jul-31, Volume: 9

    Topics: Acetylation; Amino Acid Sequence; Chromatography, Liquid; Glycine max; Histones; Lysine; Methylation; Molecular Sequence Data; Plant Proteins; Protein Processing, Post-Translational; Sequence Alignment; Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization

2009
The presence of RNA polymerase II, active or stalled, predicts epigenetic fate of promoter CpG islands.
    Genome research, 2009, Volume: 19, Issue:11

    Topics: Cell Line; Cell Line, Tumor; Chromatin Immunoprecipitation; CpG Islands; DNA Methylation; Female; Genetic Predisposition to Disease; Histones; Humans; Lysine; Male; Methylation; Oligonucleotide Array Sequence Analysis; Promoter Regions, Genetic; Prostatic Neoplasms; Protein Binding; RNA Polymerase II; Transcription, Genetic

2009
Linking cell cycle to histone modifications: SBF and H2B monoubiquitination machinery and cell-cycle regulation of H3K79 dimethylation.
    Molecular cell, 2009, Sep-11, Volume: 35, Issue:5

    Topics: Cell Cycle; DNA-Binding Proteins; DNA, Intergenic; Gene Expression Profiling; Gene Expression Regulation, Fungal; Histone-Lysine N-Methyltransferase; Histones; Lysine; Methylation; Nuclear Proteins; Oligonucleotide Array Sequence Analysis; Open Reading Frames; Promoter Regions, Genetic; Protein Processing, Post-Translational; Repressor Proteins; RNA-Binding Proteins; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins; Signal Transduction; Time Factors; Transcription Factors; Transcription, Genetic; Ubiquitin-Conjugating Enzymes; Ubiquitination

2009
Histone methylation and decreased expression of TrkB.T1 in orbital frontal cortex of suicide completers.
    Molecular psychiatry, 2009, Volume: 14, Issue:9

    Topics: Adult; Depression; Down-Regulation; Female; Histones; Humans; Immunoprecipitation; Lysine; Methylation; Middle Aged; Prefrontal Cortex; Receptor, trkB; Suicide, Attempted

2009
Global analysis of H3K4 methylation defines MLL family member targets and points to a role for MLL1-mediated H3K4 methylation in the regulation of transcriptional initiation by RNA polymerase II.
    Molecular and cellular biology, 2009, Volume: 29, Issue:22

    Topics: Animals; Chromatin; DNA, Intergenic; Gene Expression Regulation; Genes, Homeobox; Genome; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation; Mice; Myeloid-Lymphoid Leukemia Protein; Proto-Oncogene Proteins; Reverse Transcriptase Polymerase Chain Reaction; RNA Polymerase II; Transcription, Genetic

2009
Regulation of vitamin D receptor function in MEN1-related parathyroid adenomas.
    Molecular and cellular endocrinology, 2009, Dec-10, Volume: 313, Issue:1-2

    Topics: Animals; Cell Line; Gene Expression Regulation; Histones; Humans; Lysine; Methylation; Mice; Mice, Knockout; Multiple Endocrine Neoplasia Type 1; Parathyroid Neoplasms; Proto-Oncogene Proteins; Receptors, Calcitriol; Two-Hybrid System Techniques

2009
The interaction of NSBP1/HMGN5 with nucleosomes in euchromatin counteracts linker histone-mediated chromatin compaction and modulates transcription.
    Molecular cell, 2009, Sep-11, Volume: 35, Issue:5

    Topics: Animals; Binding Sites; Cell Line, Transformed; Chromatin Assembly and Disassembly; Euchromatin; Gene Expression Profiling; Histones; HMGN Proteins; Lysine; Methylation; Mice; Microscopy, Confocal; Models, Molecular; NIH 3T3 Cells; Nucleic Acid Conformation; Nucleosomes; Protein Conformation; Protein Processing, Post-Translational; Protein Structure, Tertiary; Recombinant Fusion Proteins; RNA Interference; Trans-Activators; Transcription, Genetic; Transfection

2009
Role of the polycomb protein EED in the propagation of repressive histone marks.
    Nature, 2009, Oct-08, Volume: 461, Issue:7265

    Topics: Allosteric Regulation; Animals; Cell Line; Chromatin; Crystallography, X-Ray; Drosophila melanogaster; Drosophila Proteins; Enzyme Activation; Gene Silencing; Histone-Lysine N-Methyltransferase; Histones; Lysine; Methylation; Models, Biological; Models, Molecular; Nuclear Proteins; Nucleosomes; Polycomb Repressive Complex 2; Protein Binding; Protein Structure, Tertiary; Repressor Proteins; Substrate Specificity

2009
A systematic evaluation of the compatibility of histones containing methyl-lysine analogues with biochemical reactions.
    Cell research, 2009, Volume: 19, Issue:10

    Topics: Histocompatibility Antigens; Histone Demethylases; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation; Protein Binding

2009
Genetically encoding N(epsilon)-methyl-L-lysine in recombinant histones.
    Journal of the American Chemical Society, 2009, Oct-14, Volume: 131, Issue:40

    Topics: Escherichia coli; Histones; Lysine; Methylation; Mutagenesis, Site-Directed; Recombinant Proteins

2009
Linking the cell cycle to histone modifications: Dot1, G1/S, and cycling K79me2.
    Molecular cell, 2009, Sep-24, Volume: 35, Issue:6

    Topics: Cell Cycle; DNA, Intergenic; G1 Phase; Gene Expression Regulation, Fungal; Histone-Lysine N-Methyltransferase; Histones; Lysine; Methylation; Nuclear Proteins; Nucleosomes; Open Reading Frames; Promoter Regions, Genetic; Protein Processing, Post-Translational; S Phase; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins; Ubiquitination

2009
Investigating repetitively matching short sequencing reads: the enigmatic nature of H3K9me3.
    Epigenetics, 2009, Oct-01, Volume: 4, Issue:7

    Topics: Genome-Wide Association Study; Histones; Humans; Lysine; Methylation; Repetitive Sequences, Nucleic Acid; Sequence Alignment; Sequence Analysis, DNA

2009
Validation-based insertional mutagenesis identifies lysine demethylase FBXL11 as a negative regulator of NFkappaB.
    Proceedings of the National Academy of Sciences of the United States of America, 2009, Sep-22, Volume: 106, Issue:38

    Topics: Antibiotics, Antineoplastic; Bleomycin; Blotting, Northern; Blotting, Western; Cell Line; Cell Survival; F-Box Proteins; Genetic Vectors; Green Fluorescent Proteins; Histones; HT29 Cells; Humans; Jumonji Domain-Containing Histone Demethylases; Lysine; Methylation; Microscopy, Fluorescence; Mutagenesis, Insertional; Mutation; NF-kappa B; Oxidoreductases, N-Demethylating; Recombinant Fusion Proteins; Reverse Transcriptase Polymerase Chain Reaction; RNA, Small Interfering; Transfection

2009
Multimerization and H3K9me3 binding are required for CDYL1b heterochromatin association.
    The Journal of biological chemistry, 2009, Dec-11, Volume: 284, Issue:50

    Topics: Alternative Splicing; Amino Acid Sequence; Animals; Cells, Cultured; Co-Repressor Proteins; Heterochromatin; Histones; Humans; Hydro-Lyases; Lysine; Methylation; Mice; Models, Molecular; Molecular Sequence Data; Protein Isoforms; Protein Multimerization; Protein Structure, Quaternary; Proteins; Sequence Alignment

2009
Histone modifications associated with drought tolerance in the desert plant Zygophyllum dumosum Boiss.
    Planta, 2009, Volume: 231, Issue:1

    Topics: Adaptation, Physiological; Cell Nucleus Size; Desert Climate; Droughts; Genes, Plant; Histones; Humans; Lysine; Methylation; Methyltransferases; Plant Leaves; Plant Proteins; Protein Processing, Post-Translational; Repressor Proteins; Seasons; Zygophyllum

2009
BBAP monoubiquitylates histone H4 at lysine 91 and selectively modulates the DNA damage response.
    Molecular cell, 2009, Oct-09, Volume: 36, Issue:1

    Topics: Acetylation; Apoptosis; Cell Line; Cell Proliferation; DNA Damage; Doxorubicin; HeLa Cells; Histone-Lysine N-Methyltransferase; Histones; Humans; Hydroxyurea; Intracellular Signaling Peptides and Proteins; Lysine; Methylation; Nucleosomes; Protein Binding; Protein Processing, Post-Translational; Recombinant Proteins; RNA, Small Interfering; Tumor Suppressor p53-Binding Protein 1; Ubiquitin; Ubiquitin-Protein Ligases; Ubiquitination

2009
Histone H2B ubiquitylation is not required for histone H3 methylation at lysine 4 in tetrahymena.
    The Journal of biological chemistry, 2009, Dec-11, Volume: 284, Issue:50

    Topics: Amino Acid Sequence; Animals; Cluster Analysis; Histones; Humans; Lysine; Methylation; Microarray Analysis; Molecular Sequence Data; Protozoan Proteins; Sequence Alignment; Tetrahymena; Ubiquitin-Protein Ligases; Ubiquitination

2009
Set2-dependent K36 methylation is regulated by novel intratail interactions within H3.
    Molecular and cellular biology, 2009, Volume: 29, Issue:24

    Topics: Amino Acid Sequence; Gene Expression Regulation, Fungal; Histones; Lysine; Methylation; Methyltransferases; Molecular Sequence Data; Mutation; Open Reading Frames; Phenotype; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins; Transcription, Genetic

2009
Methylation, a new epigenetic mark for protein stability.
    Epigenetics, 2009, Oct-01, Volume: 4, Issue:7

    Topics: Animals; Epigenesis, Genetic; Genetic Markers; Histone-Lysine N-Methyltransferase; Humans; Lysine; Methylation; Protein Stability; Proteins

2009
Structural studies of a four-MBT repeat protein MBTD1.
    PloS one, 2009, Oct-20, Volume: 4, Issue:10

    Topics: Amino Acid Sequence; Arginine; Chromatin; Chromosomal Proteins, Non-Histone; Histones; Humans; Lysine; Methylation; Molecular Conformation; Molecular Sequence Data; Nucleosomes; Polycomb-Group Proteins; Protein Conformation; Protein Processing, Post-Translational; Protein Structure, Tertiary; Repressor Proteins; Sequence Homology, Amino Acid

2009
Analysis of arginine and lysine methylation utilizing peptide separations at neutral pH and electron transfer dissociation mass spectrometry.
    Journal of the American Society for Mass Spectrometry, 2010, Volume: 21, Issue:1

    Topics: Amino Acid Sequence; Animals; Arginine; Cattle; Cell Line; Chromatography, Reverse-Phase; HeLa Cells; Humans; Hydrogen-Ion Concentration; Lysine; Methylation; Molecular Sequence Data; Peptides; Proteins; Spectrometry, Mass, Electrospray Ionization; Tandem Mass Spectrometry

2010
Modification of integration site preferences of an HIV-1-based vector by expression of a novel synthetic protein.
    Human gene therapy, 2010, Volume: 21, Issue:3

    Topics: Binding Sites; Blotting, Western; Cell Proliferation; Chromatin Immunoprecipitation; Chromobox Protein Homolog 5; Chromosomal Proteins, Non-Histone; Genetic Vectors; Green Fluorescent Proteins; Heterochromatin; Histones; HIV-1; Humans; Immunoenzyme Techniques; Immunoprecipitation; Intercellular Signaling Peptides and Proteins; Lentivirus; Lysine; Methylation; Recombinant Fusion Proteins; Reverse Transcriptase Polymerase Chain Reaction; RNA, Messenger; Virus Integration; Virus Replication

2010
H3K4 dimethylation in hepatocellular carcinoma is rare compared with other hepatobiliary and gastrointestinal carcinomas and correlates with expression of the methylase Ash2 and the demethylase LSD1.
    Human pathology, 2010, Volume: 41, Issue:2

    Topics: Adult; Aged; Aged, 80 and over; Bile Duct Neoplasms; Bile Ducts, Extrahepatic; Bile Ducts, Intrahepatic; Carcinoma, Hepatocellular; Chi-Square Distribution; Cholangiocarcinoma; DNA-Binding Proteins; Female; Gastrointestinal Neoplasms; Histone Demethylases; Histones; Humans; Immunohistochemistry; Liver Neoplasms; Lysine; Male; Methylation; Middle Aged; Nuclear Proteins; Pancreatic Neoplasms; Transcription Factors

2010
A conserved interaction between the SDI domain of Bre2 and the Dpy-30 domain of Sdc1 is required for histone methylation and gene expression.
    The Journal of biological chemistry, 2010, Jan-01, Volume: 285, Issue:1

    Topics: Disulfides; DNA-Binding Proteins; Gene Expression Regulation, Fungal; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation; Nuclear Proteins; Protein Binding; Protein Multimerization; Protein Structure, Tertiary; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins; Transcription Factors

2010
A homogeneous method for investigation of methylation-dependent protein-protein interactions in epigenetics.
    Nucleic acids research, 2010, Volume: 38, Issue:2

    Topics: Binding, Competitive; Chromobox Protein Homolog 5; Chromosomal Proteins, Non-Histone; Epigenesis, Genetic; Histones; Luminescent Measurements; Lysine; Methylation; Peptides; Phosphoproteins; Protein Interaction Domains and Motifs; Protein Interaction Mapping

2010
A histone demethylase is necessary for regeneration in zebrafish.
    Proceedings of the National Academy of Sciences of the United States of America, 2009, Nov-24, Volume: 106, Issue:47

    Topics: Animals; Chromatin; Extremities; Histones; Homeodomain Proteins; Humans; Jumonji Domain-Containing Histone Demethylases; Lysine; Methylation; Oligonucleotides, Antisense; Promoter Regions, Genetic; Regeneration; Zebrafish; Zebrafish Proteins

2009
Regulation of hippocampal H3 histone methylation by acute and chronic stress.
    Proceedings of the National Academy of Sciences of the United States of America, 2009, Dec-08, Volume: 106, Issue:49

    Topics: Acute Disease; Animals; Chronic Disease; Dentate Gyrus; Fluoxetine; Hippocampus; Histones; Lysine; Male; Methylation; Rats; Rats, Sprague-Dawley; Restraint, Physical; Stress, Psychological

2009
A simple calixarene recognizes post-translationally methylated lysine.
    Chembiochem : a European journal of chemical biology, 2010, Jan-04, Volume: 11, Issue:1

    Topics: Calixarenes; Chromobox Protein Homolog 5; Chromosomal Proteins, Non-Histone; Histones; Lysine; Magnetic Resonance Spectroscopy; Methylation; Protein Processing, Post-Translational; Thermodynamics

2010
In vivo residue-specific histone methylation dynamics.
    The Journal of biological chemistry, 2010, Jan-29, Volume: 285, Issue:5

    Topics: Arginine; Biochemistry; Chromatography, Liquid; Gene Silencing; HeLa Cells; Histones; Humans; Kinetics; Lysine; Mass Spectrometry; Methylation; Peptides; Protein Processing, Post-Translational; Proteomics

2010
Histone H3K4 and K36 methylation, Chd1 and Rpd3S oppose the functions of Saccharomyces cerevisiae Spt4-Spt5 in transcription.
    Genetics, 2010, Volume: 184, Issue:2

    Topics: Acetylation; Chromatin; Chromosomal Proteins, Non-Histone; Conserved Sequence; DNA-Binding Proteins; Histone Deacetylases; Histones; Kinetics; Lysine; Methylation; Mutation; Nuclear Proteins; Nucleosomes; Protein Structure, Tertiary; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins; Transcription, Genetic; Transcriptional Elongation Factors

2010
IVICAT for the masses: an improved technique for permethylation of peptides.
    Journal of biomolecular techniques : JBT, 2009, Volume: 20, Issue:5

    Topics: Acetylation; Biochemistry; Chromatography; Cryptosporidium; Histones; Hydrolysis; Lysine; Methylamines; Methylation; Models, Chemical; Peptides; Protein Structure, Tertiary; Proteomics; Toxoplasma

2009
Carboxymethylation of the fibrillar collagen with respect to formation of hydroxyapatite.
    Journal of biomedical materials research. Part B, Applied biomaterials, 2010, Volume: 92, Issue:2

    Topics: Alkylation; Amino Acids; Biomimetics; Borohydrides; Collagen; Crystallization; Glucose; Glucuronic Acid; Glyoxylates; Hydroxyapatites; Indicators and Reagents; Lysine; Methylation; Microfibrils; Microscopy, Atomic Force; Microscopy, Electron, Scanning; Minerals; Spectroscopy, Fourier Transform Infrared

2010
Screening for inhibitors of low-affinity epigenetic peptide-protein interactions: an AlphaScreen-based assay for antagonists of methyl-lysine binding proteins.
    Journal of biomolecular screening, 2010, Volume: 15, Issue:1

    Topics: Automation; Binding, Competitive; Biological Assay; Buffers; Epigenesis, Genetic; Histones; Ligands; Lysine; Methylation; Miniaturization; Neoplasm Proteins; Peptides; Pilot Projects; Polysorbates; Protein Binding; Proteins; Small Molecule Libraries; Sodium Chloride; Time Factors; Titrimetry

2010
Prenatal exposure to apoE deficiency and postnatal hypercholesterolemia are associated with altered cell-specific lysine methyltransferase and histone methylation patterns in the vasculature.
    The American journal of pathology, 2010, Volume: 176, Issue:2

    Topics: Animals; Animals, Newborn; Apolipoproteins E; Blood Vessels; Diet; Epigenesis, Genetic; Female; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Histones; Hypercholesterolemia; Lysine; Maternal Nutritional Physiological Phenomena; Methylation; Methyltransferases; Mice; Mice, Inbred C57BL; Mice, Transgenic; Organ Specificity; Pregnancy; Prenatal Exposure Delayed Effects

2010
Reassessing the abundance of H3K9me2 chromatin domains in embryonic stem cells.
    Nature genetics, 2010, Volume: 42, Issue:1

    Topics: Animals; Cell Differentiation; Chromosome Mapping; Embryonic Stem Cells; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation; Mice; Protein Processing, Post-Translational

2010
Histone H3 methylation at lysine 4 on the SLC2A5 gene in intestinal Caco-2 cells is involved in SLC2A5 expression.
    Biochemical and biophysical research communications, 2010, Jan-29, Volume: 392, Issue:1

    Topics: Caco-2 Cells; Dexamethasone; Gene Expression Regulation; Glucose Transporter Type 5; Histones; Humans; Lysine; Methylation; Mitogen-Activated Protein Kinase 1; Mitogen-Activated Protein Kinase 3; Protein Kinase Inhibitors

2010
Ligand-specific regulation of the extracellular surface of a G-protein-coupled receptor.
    Nature, 2010, Jan-07, Volume: 463, Issue:7277

    Topics: Adrenergic beta-2 Receptor Agonists; Adrenergic beta-2 Receptor Antagonists; Allosteric Regulation; Binding Sites; Crystallography, X-Ray; Drug Inverse Agonism; Ethanolamines; Formoterol Fumarate; Humans; Ligands; Lysine; Methylation; Models, Molecular; Mutant Proteins; Nuclear Magnetic Resonance, Biomolecular; Propanolamines; Protein Structure, Tertiary; Receptors, Adrenergic, beta-2; Static Electricity; Substrate Specificity

2010
Essential role of the histone methyltransferase G9a in cocaine-induced plasticity.
    Science (New York, N.Y.), 2010, Jan-08, Volume: 327, Issue:5962

    Topics: Animals; Behavior, Animal; Cocaine; Cocaine-Related Disorders; Dendritic Spines; Down-Regulation; Enzyme Repression; Gene Expression Profiling; Gene Expression Regulation; Histone-Lysine N-Methyltransferase; Histones; Lysine; Male; Methylation; Mice; Mice, Inbred C57BL; Neuronal Plasticity; Neurons; Nucleus Accumbens; Oligonucleotide Array Sequence Analysis; Proto-Oncogene Proteins c-fos; Reward; Self Administration; Transcription, Genetic

2010
Phosphorylation of serine-10 of histone H3 shields modified lysine-9 selectively during mitosis.
    Genes to cells : devoted to molecular & cellular mechanisms, 2010, Volume: 15, Issue:3

    Topics: Animals; Aurora Kinase B; Benzamides; Cell Cycle; Chromobox Protein Homolog 5; Chromosomal Proteins, Non-Histone; Female; Histones; Lysine; Male; Methylation; Mice; Mitosis; NIH 3T3 Cells; Phosphorylation; Protein Kinase Inhibitors; Quinazolines; Serine

2010
KAP1 controls endogenous retroviruses in embryonic stem cells.
    Nature, 2010, Jan-14, Volume: 463, Issue:7278

    Topics: 5' Untranslated Regions; Acetylation; Animals; DNA Methylation; Embryo, Mammalian; Embryonic Stem Cells; Endogenous Retroviruses; Fibroblasts; Gene Silencing; Genes, Intracisternal A-Particle; Genes, Reporter; Green Fluorescent Proteins; Histones; Leukemia Virus, Murine; Lysine; Methylation; Mice; Nuclear Proteins; Promoter Regions, Genetic; Repressor Proteins; Tripartite Motif-Containing Protein 28

2010
Regulation of NF-kappaB by NSD1/FBXL11-dependent reversible lysine methylation of p65.
    Proceedings of the National Academy of Sciences of the United States of America, 2010, Jan-05, Volume: 107, Issue:1

    Topics: Amino Acid Sequence; Animals; Cell Line, Tumor; Cell Proliferation; Cells, Cultured; Cytokines; Embryo, Mammalian; F-Box Proteins; Fibroblasts; Gene Expression Regulation; Histone Demethylases; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Humans; Intracellular Signaling Peptides and Proteins; Jumonji Domain-Containing Histone Demethylases; Lysine; Methylation; Mice; Mice, Knockout; Molecular Sequence Data; Nuclear Proteins; Oxidoreductases, N-Demethylating; Protein Methyltransferases; Protein Subunits; Transcription Factor RelA

2010
Regulation of HOXA2 gene expression by the ATP-dependent chromatin remodeling enzyme CHD8.
    FEBS letters, 2010, Feb-19, Volume: 584, Issue:4

    Topics: Adenosine Triphosphate; Blotting, Western; Cell Line, Tumor; Chromatin Assembly and Disassembly; Chromatin Immunoprecipitation; DNA-Binding Proteins; Gene Expression Regulation, Neoplastic; Histone-Lysine N-Methyltransferase; Histones; Homeodomain Proteins; Humans; Intracellular Signaling Peptides and Proteins; Lysine; Methylation; Myeloid-Lymphoid Leukemia Protein; Nuclear Proteins; Promoter Regions, Genetic; Protein Binding; Reverse Transcriptase Polymerase Chain Reaction; RNA Interference; Transcription Factors; Tretinoin

2010
Deregulation of H3K27 methylation in cancer.
    Nature genetics, 2010, Volume: 42, Issue:2

    Topics: DNA-Binding Proteins; Enhancer of Zeste Homolog 2 Protein; Germinal Center; Histones; Humans; Lymphoma, Follicular; Lymphoma, Large B-Cell, Diffuse; Lysine; Methylation; Mutation; Polycomb Repressive Complex 2; Transcription Factors

2010
G9a and Glp methylate lysine 373 in the tumor suppressor p53.
    The Journal of biological chemistry, 2010, Mar-26, Volume: 285, Issue:13

    Topics: Autoantigens; DNA Damage; DNA Methylation; Gene Expression Regulation; Golgi Matrix Proteins; Histocompatibility Antigens; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Humans; Lysine; Methylation; Neoplasms; Peptides; Protein Processing, Post-Translational; Proteins; Recombinant Proteins; RNA, Small Interfering; Tumor Suppressor Protein p53

2010
Enhanced crystal packing due to solvent reorganization through reductive methylation of lysine residues in oxidoreductase from Streptococcus pneumoniae.
    Journal of structural and functional genomics, 2010, Volume: 11, Issue:2

    Topics: Crystallization; Entropy; Hydrogen Bonding; Lysine; Methylation; Models, Molecular; Molecular Dynamics Simulation; Oxidoreductases; Protein Conformation; Solvents; Streptococcus pneumoniae; Thermodynamics

2010
Identification of arginine- and lysine-methylation in the proteome of Saccharomyces cerevisiae and its functional implications.
    BMC genomics, 2010, Feb-05, Volume: 11

    Topics: Arginine; Computational Biology; Lysine; Methylation; Protein Interaction Domains and Motifs; Proteome; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins; Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization

2010
A nucleosome surface formed by histone H4, H2A, and H3 residues is needed for proper histone H3 Lys36 methylation, histone acetylation, and repression of cryptic transcription.
    The Journal of biological chemistry, 2010, Apr-09, Volume: 285, Issue:15

    Topics: Acetylation; Chromatin Immunoprecipitation; Gene Expression Regulation, Fungal; Glutathione Transferase; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Histones; Leucine; Lysine; Methylation; Mutation; Plasmids; Saccharomyces cerevisiae; Transcription, Genetic

2010
Lysine methylation regulates the pRb tumour suppressor protein.
    Oncogene, 2010, Apr-22, Volume: 29, Issue:16

    Topics: Cell Cycle; Cell Differentiation; Cell Line, Tumor; Chromobox Protein Homolog 5; Chromosomal Proteins, Non-Histone; Humans; Lysine; Methylation; Retinoblastoma Protein

2010
Replication and active demethylation represent partially overlapping mechanisms for erasure of H3K4me3 in budding yeast.
    PLoS genetics, 2010, Feb-05, Volume: 6, Issue:2

    Topics: DNA Replication; Genome, Fungal; Histones; Jumonji Domain-Containing Histone Demethylases; Kinetics; Lysine; Mating Factor; Methylation; Nucleosomes; Peptides; S Phase; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins; Temperature

2010
Genomic approaches uncover increasing complexities in the regulatory landscape at the human SCL (TAL1) locus.
    PloS one, 2010, Feb-05, Volume: 5, Issue:2

    Topics: Acetylation; Basic Helix-Loop-Helix Transcription Factors; Binding Sites; CCCTC-Binding Factor; Cell Line, Tumor; Chromatin Immunoprecipitation; Cluster Analysis; Gene Expression Regulation; Histones; HL-60 Cells; Humans; K562 Cells; Lysine; Methylation; Oligonucleotide Array Sequence Analysis; Promoter Regions, Genetic; Protein Binding; Proto-Oncogene Proteins; Regulatory Sequences, Nucleic Acid; Repressor Proteins; T-Cell Acute Lymphocytic Leukemia Protein 1; Transcription Factors; U937 Cells

2010
Functional interplay between acetylation and methylation of the RelA subunit of NF-kappaB.
    Molecular and cellular biology, 2010, Volume: 30, Issue:9

    Topics: Acetylation; Amino Acid Sequence; Animals; Cell Line; Glutamine; Histone-Lysine N-Methyltransferase; Humans; Lysine; Methylation; Mice; Models, Biological; Models, Molecular; Molecular Sequence Data; Mutation; Promoter Regions, Genetic; Protein Binding; Protein Stability; Protein Structure, Tertiary; Protein Subunits; Transcription Factor RelA; Tumor Necrosis Factor-alpha; Ubiquitination

2010
Histone H3 lysine 27 methylation asymmetry on developmentally-regulated promoters distinguish the first two lineages in mouse preimplantation embryos.
    PloS one, 2010, Feb-10, Volume: 5, Issue:2

    Topics: Animals; Blastocyst; Cell Lineage; Ectoderm; Embryonic Stem Cells; Female; Gene Expression Profiling; Gene Expression Regulation, Developmental; Histones; Lysine; Male; Methylation; Mice; Mice, Inbred C57BL; Mice, Inbred DBA; Oligonucleotide Array Sequence Analysis; Promoter Regions, Genetic; Reverse Transcriptase Polymerase Chain Reaction; Trophoblasts

2010
Prognostic relevance of global histone H3 lysine 4 (H3K4) methylation in renal cell carcinoma.
    International journal of cancer, 2010, Nov-15, Volume: 127, Issue:10

    Topics: Carcinoma, Renal Cell; Female; Histones; Humans; Immunohistochemistry; Kidney Neoplasms; Lysine; Male; Methylation; Middle Aged; Prognosis

2010
A small molecule receptor that selectively recognizes trimethyl lysine in a histone peptide with native protein-like affinity.
    Chemical communications (Cambridge, England), 2010, Mar-21, Volume: 46, Issue:11

    Topics: Amino Acid Substitution; Combinatorial Chemistry Techniques; Histones; Lysine; Methylation; Mutagenesis, Site-Directed; Protein Processing, Post-Translational

2010
Phosphorylation of histone H3T6 by PKCbeta(I) controls demethylation at histone H3K4.
    Nature, 2010, Apr-01, Volume: 464, Issue:7289

    Topics: Androgens; Animals; Cell Division; Cell Line, Tumor; Chromatin; Gene Expression Regulation; Gene Knockdown Techniques; Histone Demethylases; Histones; Humans; Lysine; Male; Methylation; Mice; Mice, Nude; Mice, SCID; Phosphorylation; Phosphothreonine; Promoter Regions, Genetic; Prostatic Neoplasms; Protein Kinase C; Protein Kinase C beta; Signal Transduction; Xenograft Model Antitumor Assays

2010
Cohesion establishment factor, Eco1 represses transcription via association with histone demethylase, LSD1.
    Biochemical and biophysical research communications, 2010, Apr-16, Volume: 394, Issue:4

    Topics: Acetyltransferases; Cell Line; Chromatin; Chromatin Immunoprecipitation; Gene Expression Regulation; Histone Deacetylase 1; Histone Deacetylase 2; Histone Demethylases; Humans; Lysine; Methylation; Repressor Proteins; Transcription, Genetic

2010
Chromatin signature of embryonic pluripotency is established during genome activation.
    Nature, 2010, Apr-08, Volume: 464, Issue:7290

    Topics: Animals; Chromatin; Chromatin Immunoprecipitation; Gene Expression Regulation, Developmental; Gene Silencing; Genome; Histones; Lysine; Methylation; Oligonucleotide Array Sequence Analysis; Pluripotent Stem Cells; Promoter Regions, Genetic; RNA Polymerase II; Transcriptional Activation; Transgenes; Zebrafish; Zebrafish Proteins; Zygote

2010
Chromatin states of developmentally-regulated genes revealed by DNA and histone methylation patterns in zebrafish embryos.
    The International journal of developmental biology, 2010, Volume: 54, Issue:5

    Topics: Animals; Blastula; Cell Line; Chromatin; Chromatin Immunoprecipitation; CpG Islands; DNA Methylation; Embryo, Nonmammalian; Fibroblasts; Gene Expression Profiling; Gene Expression Regulation, Developmental; Histones; In Situ Hybridization; Lysine; Methylation; Oligonucleotide Array Sequence Analysis; Promoter Regions, Genetic; Reverse Transcriptase Polymerase Chain Reaction; Zebrafish; Zebrafish Proteins

2010
Enhanced protein detection using a trapping mode on a hybrid quadrupole linear ion trap (Q-Trap).
    Analytical chemistry, 2009, Aug-01, Volume: 81, Issue:15

    Topics: Animals; Cells, Cultured; Chickens; Chromatography, High Pressure Liquid; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Histones; Lysine; Mass Spectrometry; Methylation; Nanotechnology; Protein Processing, Post-Translational

2009
Histone H3 trimethylated at lysine 4 is enriched at probable transcription start sites in Trypanosoma brucei.
    Molecular and biochemical parasitology, 2010, Volume: 172, Issue:2

    Topics: Animals; Chromatin Immunoprecipitation; Gene Expression Regulation; Histones; Lysine; Methylation; Protein Binding; Transcription Initiation Site; Trypanosoma brucei brucei

2010
Installation of site-specific methylation into histones using methyl lysine analogs.
    Current protocols in molecular biology, 2010, Volume: Chapter 21

    Topics: Histones; Lysine; Methylation; Molecular Structure; Protein Processing, Post-Translational

2010
SDG714 regulates specific gene expression and consequently affects plant growth via H3K9 dimethylation.
    Journal of integrative plant biology, 2010, Volume: 52, Issue:4

    Topics: Arabidopsis; Blotting, Western; Chromatin Immunoprecipitation; Estradiol; Heterochromatin; Histones; Lysine; Methylation; Oligonucleotide Array Sequence Analysis; Oryza; Plant Proteins; Plants, Genetically Modified; Reverse Transcriptase Polymerase Chain Reaction

2010
Characterization of an antagonistic switch between histone H3 lysine 27 methylation and acetylation in the transcriptional regulation of Polycomb group target genes.
    Nucleic acids research, 2010, Volume: 38, Issue:15

    Topics: Acetylation; Animals; Embryonic Stem Cells; Gene Expression Regulation; Gene Knockout Techniques; Histone Acetyltransferases; Histones; Lysine; Methylation; Mice; Polycomb Repressive Complex 2; Polycomb-Group Proteins; Repressor Proteins; Transcription, Genetic

2010
Transcriptional activity affects the H3K4me3 level and distribution in the coding region.
    Molecular and cellular biology, 2010, Volume: 30, Issue:12

    Topics: Cell Line; Genes, Reporter; Histones; Humans; Lysine; Methylation; Models, Genetic; Open Reading Frames; Plasmids; Promoter Regions, Genetic; Transcription, Genetic

2010
Histone H4 lysine 20 mono- and tri-methylation define distinct biological processes in SV40 minichromosomes.
    Cell cycle (Georgetown, Tex.), 2010, Apr-01, Volume: 9, Issue:7

    Topics: Animals; Chromatin Immunoprecipitation; Chromosomes; DNA Replication; Lysine; Methylation; Simian virus 40

2010
LSD1-mediated demethylation of histone H3 lysine 4 triggers Myc-induced transcription.
    Oncogene, 2010, Jun-24, Volume: 29, Issue:25

    Topics: Animals; Cell Line; Chromatin; DNA; DNA Repair Enzymes; E-Box Elements; Histone Demethylases; Histones; Lysine; Methylation; Mitogens; Oxidation-Reduction; Proto-Oncogene Proteins c-myc; Rats; Transcription, Genetic

2010
A moonlighting function of Plasmodium falciparum histone 3, mono-methylated at lysine 9?
    PloS one, 2010, Apr-19, Volume: 5, Issue:4

    Topics: Cell Nucleus; Epigenesis, Genetic; Histones; Lysine; Methylation; Plasmodium falciparum; Vacuoles

2010
PHF8 targets histone methylation and RNA polymerase II to activate transcription.
    Molecular and cellular biology, 2010, Volume: 30, Issue:13

    Topics: Amino Acid Sequence; Cell Line; Gene Expression Profiling; Gene Knockdown Techniques; Histone Demethylases; Histones; Humans; Lysine; Methylation; Microarray Analysis; Molecular Sequence Data; Recombinant Fusion Proteins; RNA Polymerase II; Transcription Factors

2010
Developmental regulation and individual differences of neuronal H3K4me3 epigenomes in the prefrontal cortex.
    Proceedings of the National Academy of Sciences of the United States of America, 2010, May-11, Volume: 107, Issue:19

    Topics: Adolescent; Adult; Aged; Antigens, Nuclear; Cell Count; Child; Child, Preschool; Chromatin Assembly and Disassembly; Epigenesis, Genetic; Gene Expression Profiling; Gene Expression Regulation, Developmental; Genome; Histones; Humans; Infant; Lysine; Methylation; Middle Aged; Nerve Tissue Proteins; Neurons; Prefrontal Cortex; RNA, Messenger; Young Adult

2010
ODDSOC2 is a MADS box floral repressor that is down-regulated by vernalization in temperate cereals.
    Plant physiology, 2010, Volume: 153, Issue:3

    Topics: Arabidopsis Proteins; Climate; Cold Temperature; Down-Regulation; Edible Grain; Flowers; Gene Expression Regulation, Plant; Genes, Plant; Histones; Hordeum; Lysine; MADS Domain Proteins; Methylation; Models, Genetic; Molecular Sequence Data; Phenotype; Photoperiod; Plant Leaves; Plant Proteins; Plant Stems; Promoter Regions, Genetic; Repressor Proteins; Sequence Homology, Amino Acid

2010
Nuclear profiles of H3 histones trimethylated on Lys27 in bovine (Bos taurus) embryos obtained after in vitro fertilization or somatic cell nuclear transfer.
    The Journal of reproduction and development, 2010, Volume: 56, Issue:4

    Topics: Animals; Cattle; Cell Nucleus; Cells, Cultured; Chromatin Assembly and Disassembly; Embryo, Mammalian; Embryonic Development; Female; Fertilization in Vitro; Heterochromatin; Histones; Hybrid Cells; Lysine; Male; Metabolome; Methylation; Mice; Nuclear Transfer Techniques; Pregnancy

2010
Mapping of lysine methylation and acetylation in core histones of Neurospora crassa.
    Biochemistry, 2010, Jun-29, Volume: 49, Issue:25

    Topics: Acetylation; Amino Acid Sequence; Chromatography, High Pressure Liquid; Histones; Lysine; Methylation; Neurospora crassa; Spectrometry, Mass, Electrospray Ionization; Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization

2010
Histone H2B C-terminal helix mediates trans-histone H3K4 methylation independent of H2B ubiquitination.
    Molecular and cellular biology, 2010, Volume: 30, Issue:13

    Topics: Amino Acid Sequence; Chromatin; DNA-Binding Proteins; Gene Expression Regulation, Fungal; Gene Silencing; Histone-Lysine N-Methyltransferase; Histones; Lysine; Methylation; Models, Molecular; Molecular Sequence Data; Mutation; Protein Conformation; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins; Telomere; Ubiquitination

2010
Methylation of ribosomal protein L42 regulates ribosomal function and stress-adapted cell growth.
    The Journal of biological chemistry, 2010, Jul-16, Volume: 285, Issue:29

    Topics: Adaptation, Physiological; Amino Acid Sequence; Cell Line; Cell Nucleus; Cell Proliferation; Chromatography, Liquid; Cold Temperature; Conserved Sequence; Cycloheximide; Humans; Lysine; Mass Spectrometry; Methylation; Methyltransferases; Molecular Sequence Data; Mutation; Protein Transport; Recombinant Proteins; Ribosomal Proteins; Ribosome Subunits, Large, Eukaryotic; Ribosomes; Schizosaccharomyces; Schizosaccharomyces pombe Proteins; Stress, Physiological; Time Factors

2010
Binding of the MLL PHD3 finger to histone H3K4me3 is required for MLL-dependent gene transcription.
    Journal of molecular biology, 2010, Jul-09, Volume: 400, Issue:2

    Topics: Amino Acid Sequence; Animals; Cattle; Cell Line; Gene Expression Regulation; Histones; Humans; Lysine; Methylation; Models, Molecular; Molecular Sequence Data; Mutagenesis, Site-Directed; Myeloid-Lymphoid Leukemia Protein; Nuclear Magnetic Resonance, Biomolecular; Protein Binding; Protein Structure, Secondary; Protein Structure, Tertiary; Proto-Oncogene Mas; Recombinant Fusion Proteins; Sequence Alignment; Transcription, Genetic

2010
JIL-1 and Su(var)3-7 interact genetically and counteract each other's effect on position-effect variegation in Drosophila.
    Genetics, 2010, Volume: 185, Issue:4

    Topics: Animals; Animals, Genetically Modified; Chromosomal Position Effects; Chromosomes, Insect; DNA-Binding Proteins; Drosophila melanogaster; Drosophila Proteins; Epistasis, Genetic; Female; Green Fluorescent Proteins; Histones; Immunohistochemistry; Lysine; Male; Methylation; Methyltransferases; Microscopy, Fluorescence; Mutation; Protein Serine-Threonine Kinases

2010
Widespread remodeling of mid-coding sequence nucleosomes by Isw1.
    Genome biology, 2010, Volume: 11, Issue:5

    Topics: Adenosine Triphosphatases; Base Sequence; Chromatin Assembly and Disassembly; Chromosome Positioning; DNA-Binding Proteins; Gene Deletion; Gene Expression Regulation, Fungal; Histones; Lysine; Methylation; Models, Genetic; Nucleosomes; Open Reading Frames; RNA Polymerase II; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins; Species Specificity; Transcription Initiation Site

2010
The Arabidopsis Paf1c complex component CDC73 participates in the modification of FLOWERING LOCUS C chromatin.
    Plant physiology, 2010, Volume: 153, Issue:3

    Topics: Arabidopsis; Arabidopsis Proteins; Chromatin; Chromatin Immunoprecipitation; Flowers; Gene Expression Regulation, Plant; Genes, Plant; Genetic Loci; Histones; Lysine; MADS Domain Proteins; Methylation; Mutation; Phenotype; Sequence Homology, Amino Acid; Up-Regulation

2010
cis-Regulatory elements and chromatin state coordinately control temporal and spatial expression of FLOWERING LOCUS T in Arabidopsis.
    The Plant cell, 2010, Volume: 22, Issue:5

    Topics: Arabidopsis; Arabidopsis Proteins; Base Pairing; Base Sequence; Chromatin; Chromosomal Proteins, Non-Histone; Chromosome Mapping; DNA-Binding Proteins; Gene Expression Regulation, Plant; Genetic Loci; Histones; Lysine; Methylation; Models, Genetic; Molecular Sequence Data; Photoperiod; Phylogeny; Promoter Regions, Genetic; Protein Biosynthesis; Time Factors; Transcription Factors; Transcription, Genetic; Transcriptional Activation

2010
ETS transcription factors control transcription of EZH2 and epigenetic silencing of the tumor suppressor gene Nkx3.1 in prostate cancer.
    PloS one, 2010, May-10, Volume: 5, Issue:5

    Topics: Aged; Anoikis; Cell Movement; DNA-Binding Proteins; Enhancer of Zeste Homolog 2 Protein; Gene Expression Profiling; Gene Expression Regulation, Neoplastic; Gene Knockdown Techniques; Gene Silencing; Histones; Homeodomain Proteins; Humans; Lysine; Male; Methylation; Middle Aged; Models, Genetic; Polycomb Repressive Complex 2; Prostatic Neoplasms; Proto-Oncogene Proteins c-ets; Trans-Activators; Transcription Factors; Transcription, Genetic; Transcriptional Regulator ERG; Tumor Suppressor Proteins; Up-Regulation

2010
Top-down analysis of recombinant histone H3 and its methylated analogs by ESI/FT-ICR mass spectrometry.
    Proteomics, 2010, Volume: 10, Issue:20

    Topics: Amino Acid Sequence; Amino Acid Substitution; Animals; Histones; Lysine; Methylation; Molecular Sequence Data; Molecular Weight; Recombinant Proteins; Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization; Spectroscopy, Fourier Transform Infrared; Xenopus laevis

2010
Phosphorylation of the chromodomain changes the binding specificity of Cbx2 for methylated histone H3.
    Biochemical and biophysical research communications, 2010, Jun-18, Volume: 397, Issue:1

    Topics: Amino Acid Sequence; Animals; Histones; Lysine; Male; Methylation; Mice; Mice, Inbred C57BL; Molecular Sequence Data; NIH 3T3 Cells; Phosphorylation; Polycomb Repressive Complex 1; Polycomb-Group Proteins; Protein Structure, Tertiary; Repressor Proteins

2010
Histone methylation is a critical regulator of the abnormal expression of POU5F1 and RASSF1A in testis cancer cell lines.
    International journal of andrology, 2011, Volume: 34, Issue:2

    Topics: Azacitidine; Decitabine; Gene Silencing; Histones; Humans; Lysine; Male; Methylation; Octamer Transcription Factor-3; Proto-Oncogene Mas; Testicular Neoplasms; Tumor Suppressor Proteins

2011
Profiling of histone H3 lysine 9 trimethylation levels predicts transcription factor activity and survival in acute myeloid leukemia.
    Blood, 2010, Nov-04, Volume: 116, Issue:18

    Topics: Adolescent; Antigens, CD34; Child; Child, Preschool; Disease-Free Survival; Female; Gene Expression Regulation, Leukemic; Hematopoietic Stem Cells; Histones; Humans; Infant; Leukemia, Myeloid, Acute; Lysine; Male; Methylation; Prognosis; Promoter Regions, Genetic; Protein Binding; Transcription Factors; Tumor Cells, Cultured

2010
New surface contacts formed upon reductive lysine methylation: improving the probability of protein crystallization.
    Protein science : a publication of the Protein Society, 2010, Volume: 19, Issue:7

    Topics: Crystallization; Databases, Protein; Isoelectric Point; Lysine; Methylation; Proteins; Surface Properties; Thermodynamics

2010
Two novel methyltransferases acting upon eukaryotic elongation factor 1A in Saccharomyces cerevisiae.
    Archives of biochemistry and biophysics, 2010, Aug-15, Volume: 500, Issue:2

    Topics: Amino Acid Sequence; Binding Sites; Conserved Sequence; Gene Deletion; Genes, Fungal; Lysine; Methylation; Methyltransferases; Molecular Sequence Data; Peptide Elongation Factor 1; Protein Methyltransferases; Protein Processing, Post-Translational; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins; Sequence Homology, Amino Acid

2010
Integrative epigenomic and genomic analysis of malignant pheochromocytoma.
    Experimental & molecular medicine, 2010, Jul-31, Volume: 42, Issue:7

    Topics: Adrenal Gland Neoplasms; Epigenesis, Genetic; Female; Gene Dosage; Gene Expression Regulation, Neoplastic; Gene Regulatory Networks; Genome, Human; Genomics; Histones; Humans; Lysine; Methylation; Pheochromocytoma; Protein Processing, Post-Translational; Tumor Suppressor Proteins

2010
Dueling post-translational modifications trigger folding and unfolding of a beta-hairpin peptide.
    Journal of the American Chemical Society, 2010, Jul-07, Volume: 132, Issue:26

    Topics: Animals; Cattle; Cyclic AMP-Dependent Protein Kinases; Lysine; Methylation; Peptides; Phosphorylation; Phosphoserine; Protein Denaturation; Protein Folding; Protein Processing, Post-Translational; Protein Stability; Protein Structure, Secondary

2010
The interaction of modified histones with the bromodomain testis-specific (BRDT) gene and its mRNA level in sperm of fertile donors and subfertile men.
    Reproduction (Cambridge, England), 2010, Volume: 140, Issue:3

    Topics: Acetylation; Case-Control Studies; Chromatin Assembly and Disassembly; Chromatin Immunoprecipitation; Exons; Fertility; Germany; Histones; Humans; Infertility, Male; Lysine; Male; Methylation; Nuclear Proteins; Polymerase Chain Reaction; Promoter Regions, Genetic; Protein Processing, Post-Translational; RNA, Messenger; Spermatozoa; Up-Regulation

2010
Molecular interplay of the noncoding RNA ANRIL and methylated histone H3 lysine 27 by polycomb CBX7 in transcriptional silencing of INK4a.
    Molecular cell, 2010, Jun-11, Volume: 38, Issue:5

    Topics: Animals; Cell Line, Tumor; Cellular Senescence; Cyclin-Dependent Kinase Inhibitor p15; Cyclin-Dependent Kinase Inhibitor p16; Gene Silencing; Histones; Humans; Lysine; Male; Methylation; Models, Molecular; Molecular Sequence Data; Multigene Family; Nuclear Magnetic Resonance, Biomolecular; Polycomb Repressive Complex 1; Polycomb-Group Proteins; Prostatic Neoplasms; Protein Structure, Tertiary; Repressor Proteins; RNA, Untranslated; Transcription, Genetic

2010
The polycomb group protein BMI1 is a transcriptional target of HDAC inhibitors.
    Cell cycle (Georgetown, Tex.), 2010, Jul-01, Volume: 9, Issue:13

    Topics: Apoptosis; Breast; Cell Line, Tumor; Cellular Senescence; DNA-Binding Proteins; Down-Regulation; Enhancer of Zeste Homolog 2 Protein; Epithelial Cells; Female; Histone Deacetylase Inhibitors; Histones; Humans; Lysine; Methylation; Nuclear Proteins; Polycomb Repressive Complex 1; Polycomb Repressive Complex 2; Polycomb-Group Proteins; Proto-Oncogene Proteins; Proto-Oncogene Proteins c-myc; Repressor Proteins; Transcription Factors; Transcription, Genetic; Ubiquitination

2010
The Dnmt3a PWWP domain reads histone 3 lysine 36 trimethylation and guides DNA methylation.
    The Journal of biological chemistry, 2010, Aug-20, Volume: 285, Issue:34

    Topics: Animals; Cell Line; DNA (Cytosine-5-)-Methyltransferases; DNA Methylation; DNA Methyltransferase 3A; Histones; Humans; Lysine; Methylation; Mice; Protein Array Analysis; Protein Binding; Protein Structure, Tertiary; Transfection

2010
Members of the H3K4 trimethylation complex regulate lifespan in a germline-dependent manner in C. elegans.
    Nature, 2010, Jul-15, Volume: 466, Issue:7304

    Topics: Animals; Animals, Genetically Modified; Caenorhabditis elegans; Caenorhabditis elegans Proteins; Disorders of Sex Development; Epigenesis, Genetic; Gene Expression Regulation; Gene Knockdown Techniques; Germ Cells; Histone Demethylases; Histone-Lysine N-Methyltransferase; Histones; Longevity; Lysine; Male; Methylation; Multiprotein Complexes; Nuclear Proteins; Retinoblastoma-Binding Protein 2; RNA Interference

2010
Inhibition of histone deacetylase 3 produces mitotic defects independent of alterations in histone H3 lysine 9 acetylation and methylation.
    Molecular pharmacology, 2010, Volume: 78, Issue:3

    Topics: Acetylation; Animals; Cell Line, Tumor; Chromobox Protein Homolog 5; Chromosomal Proteins, Non-Histone; Drosophila melanogaster; Embryo, Nonmammalian; Female; HeLa Cells; Heterochromatin; Histone Deacetylase Inhibitors; Histone Deacetylases; Histones; Humans; Lysine; Methylation; Mitosis; Protein Processing, Post-Translational

2010
Active loss of DNA methylation in two-cell stage goat embryos.
    The International journal of developmental biology, 2010, Volume: 54, Issue:8-9

    Topics: 5-Methylcytosine; Animals; Azacitidine; Decitabine; DNA; DNA Methylation; DNA Modification Methylases; Embryo, Mammalian; Enzyme Inhibitors; Female; Goats; Histones; Immunohistochemistry; Lysine; Male; Methylation; Zygote

2010
Small-molecule-based inhibition of histone demethylation in cells assessed by quantitative mass spectrometry.
    Journal of proteome research, 2010, Aug-06, Volume: 9, Issue:8

    Topics: Cell Line; Chromatography, Liquid; Gene Expression Regulation; Histone Demethylases; Histones; Humans; Immunoblotting; Jumonji Domain-Containing Histone Demethylases; Lysine; Mass Spectrometry; Methylation; Protein Processing, Post-Translational; Proteomics; Pyridines

2010
Silencing of integrated human papillomavirus-16 oncogenes by small interfering RNA-mediated heterochromatization.
    Molecular cancer therapeutics, 2010, Volume: 9, Issue:7

    Topics: Apoptosis; Base Sequence; Binding Sites; Blotting, Western; Cell Line, Tumor; Cell Proliferation; Chromatin; Enhancer Elements, Genetic; HeLa Cells; Heterochromatin; Histones; Human papillomavirus 16; Humans; Lysine; Methylation; Neurofibromin 1; Oncogene Proteins, Viral; Papillomavirus E7 Proteins; Repressor Proteins; Reverse Transcriptase Polymerase Chain Reaction; RNA Interference; RNA, Small Interfering; Transcription, Genetic; Transfection; Tumor Suppressor Protein p53

2010
MDM2 recruitment of lysine methyltransferases regulates p53 transcriptional output.
    The EMBO journal, 2010, Aug-04, Volume: 29, Issue:15

    Topics: Animals; Cells, Cultured; Gene Expression Regulation; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation; Methyltransferases; Mice; Promoter Regions, Genetic; Protein Binding; Proto-Oncogene Proteins c-mdm2; Repressor Proteins; Stress, Physiological; Transcription, Genetic; Tumor Suppressor Protein p53

2010
Chromatin protein L3MBTL1 is dispensable for development and tumor suppression in mice.
    The Journal of biological chemistry, 2010, Sep-03, Volume: 285, Issue:36

    Topics: Amino Acid Sequence; Animals; Base Sequence; Brain; Cell Cycle; Chromatin; Cyclin E; Gene Expression Regulation; Gene Knockout Techniques; Growth and Development; HeLa Cells; Histones; Humans; Longevity; Lymphopoiesis; Lysine; Male; Methylation; Mice; Molecular Sequence Data; Neoplasms; Nuclear Proteins; Repressor Proteins; Survival Rate; Tumor Suppressor Proteins

2010
Negative regulation of hypoxic responses via induced Reptin methylation.
    Molecular cell, 2010, Jul-09, Volume: 39, Issue:1

    Topics: Animals; ATPases Associated with Diverse Cellular Activities; Carrier Proteins; Cell Hypoxia; Cell Line; DNA Helicases; Female; Gene Expression Regulation, Neoplastic; Histocompatibility Antigens; Histone-Lysine N-Methyltransferase; Humans; Hypoxia-Inducible Factor 1, alpha Subunit; Lysine; Methylation; Mice; Models, Biological; Neoplasms; Oligonucleotide Array Sequence Analysis; Promoter Regions, Genetic; Protein Binding; Xenograft Model Antitumor Assays

2010
Lysine methylation regulates E2F1-induced cell death.
    Molecular cell, 2010, Jul-09, Volume: 39, Issue:1

    Topics: Acetylation; Cell Death; Cell Line, Tumor; DNA Damage; E2F1 Transcription Factor; Histone Demethylases; Histone-Lysine N-Methyltransferase; Humans; Lysine; Methylation; Phosphorylation; Protein Stability; Tumor Suppressor Protein p53; Ubiquitination

2010
Differentiation of neural-crest-derived intermediate pluripotent progenitors into committed periodontal populations involves unique molecular signature changes, cohort shifts, and epigenetic modifications.
    Stem cells and development, 2011, Volume: 20, Issue:1

    Topics: Adolescent; Calcification, Physiologic; Cell Differentiation; Cell Lineage; Cell Shape; Child; Dental Cementum; Dental Sac; Epigenesis, Genetic; Extracellular Matrix; Gene Expression Profiling; Gene Expression Regulation; Histones; Humans; Lysine; Methylation; Neural Crest; Osteoblasts; Osteogenesis; Periodontal Ligament; Periodontium; Pluripotent Stem Cells

2011
Characterization of HIV Tat modifications using novel methyl-lysine-specific antibodies.
    Methods (San Diego, Calif.), 2011, Volume: 53, Issue:1

    Topics: Amino Acid Sequence; Animals; Antibodies; Blotting, Western; HEK293 Cells; HIV-1; Humans; Immunoblotting; Lysine; Methylation; Protein Processing, Post-Translational; Rabbits; tat Gene Products, Human Immunodeficiency Virus; Transfection

2011
Global relevance of Aire binding to hypomethylated lysine-4 of histone-3.
    Proceedings of the National Academy of Sciences of the United States of America, 2010, Jul-20, Volume: 107, Issue:29

    Topics: AIRE Protein; Animals; Cells, Cultured; Epithelial Cells; Gene Expression Regulation; Histones; Immune Tolerance; Lysine; Methylation; Mice; Mice, Transgenic; Mutation; Oxidoreductases, O-Demethylating; Protein Binding; Protein Structure, Tertiary; RNA, Messenger; Substrate Specificity; Thymus Gland; Transcription Factors; Transcription, Genetic

2010
Lysine N(epsilon)-trimethylation, a tool for improving the selectivity of antimicrobial peptides.
    Journal of medicinal chemistry, 2010, Aug-12, Volume: 53, Issue:15

    Topics: Amino Acid Sequence; Anti-Bacterial Agents; Anti-Infective Agents; Antimicrobial Cationic Peptides; Gram-Negative Bacteria; Gram-Positive Bacteria; Hemolysis; Leishmania; Lysine; Methylation; Models, Molecular; Molecular Conformation; Molecular Sequence Data; Structure-Activity Relationship; Trypanocidal Agents

2010
Histone H4K20/H3K9 demethylase PHF8 regulates zebrafish brain and craniofacial development.
    Nature, 2010, Jul-22, Volume: 466, Issue:7305

    Topics: Animals; Biocatalysis; Brain; Catalytic Domain; Cell Cycle; Cell Line, Tumor; Cell Survival; DNA, Intergenic; Gene Expression Regulation; Head; Histone Demethylases; Histones; Homeodomain Proteins; Humans; Jaw; Lysine; Mental Retardation, X-Linked; Methylation; Neurons; Promoter Regions, Genetic; Transcription Factors; Transcription Initiation Site; Zebrafish; Zebrafish Proteins

2010
PHF8 mediates histone H4 lysine 20 demethylation events involved in cell cycle progression.
    Nature, 2010, Jul-22, Volume: 466, Issue:7305

    Topics: Adenosine Triphosphatases; Cell Cycle; Cell Line; Chromatin; Chromosomal Proteins, Non-Histone; DNA-Binding Proteins; HeLa Cells; Histone Demethylases; Histone-Lysine N-Methyltransferase; Histones; Host Cell Factor C1; Humans; Lysine; Methylation; Multiprotein Complexes; Phosphorylation; Promoter Regions, Genetic; Protein Structure, Tertiary; Transcription Factors

2010
A simple method for gene expression and chromatin profiling of individual cell types within a tissue.
    Developmental cell, 2010, Jun-15, Volume: 18, Issue:6

    Topics: Arabidopsis; Arabidopsis Proteins; Biotin; Cell Differentiation; Chromatin; Gene Expression Profiling; Gene Expression Regulation, Developmental; Gene Expression Regulation, Plant; Histones; Lysine; Methylation; Models, Genetic; Molecular Biology; Nuclear Proteins; Plant Epidermis; Plant Roots; RNA; Staining and Labeling

2010
KIAA1718 is a histone demethylase that erases repressive histone methyl marks.
    Genes to cells : devoted to molecular & cellular mechanisms, 2010, Volume: 15, Issue:8

    Topics: Animals; Cells, Cultured; Histone Demethylases; Histones; Humans; Lysine; Methylation; Mice

2010
Regulation of heterochromatic DNA replication by histone H3 lysine 27 methyltransferases.
    Nature, 2010, Aug-19, Volume: 466, Issue:7309

    Topics: Amino Acid Motifs; Arabidopsis; Arabidopsis Proteins; Catalytic Domain; DNA Methylation; DNA Replication; DNA Transposable Elements; DNA, Plant; Gene Expression Regulation, Plant; Gene Silencing; Genome, Plant; Heterochromatin; Histone-Lysine N-Methyltransferase; Histones; Lysine; Methylation; Methyltransferases; Mutant Proteins; Mutation; Replication Origin

2010
Application of machine learning methods to histone methylation ChIP-Seq data reveals H4R3me2 globally represses gene expression.
    BMC bioinformatics, 2010, Jul-23, Volume: 11

    Topics: Arginine; Artificial Intelligence; Base Sequence; CD4-Positive T-Lymphocytes; Epigenesis, Genetic; Gene Expression; Histones; Humans; Lysine; Methylation; Oligonucleotide Array Sequence Analysis; Protein Methyltransferases; Protein Processing, Post-Translational

2010
Corecognition of DNA and a methylated histone tail by the MSL3 chromodomain.
    Nature structural & molecular biology, 2010, Volume: 17, Issue:8

    Topics: Animals; DNA; Drosophila melanogaster; Drosophila Proteins; Histones; Lysine; Methylation; Models, Molecular; Peptides; Protein Structure, Secondary; Protein Structure, Tertiary; Protein Subunits; Substrate Specificity

2010
Dynamic patterns of histone lysine methylation in the developing retina.
    Investigative ophthalmology & visual science, 2010, Volume: 51, Issue:12

    Topics: Animals; Apoptosis; Biomarkers; Blotting, Western; Cell Differentiation; Cells, Cultured; Enhancer of Zeste Homolog 2 Protein; Histone-Lysine N-Methyltransferase; Histones; Immunohistochemistry; Lysine; Methylation; Mice; Microscopy, Confocal; Microscopy, Fluorescence; Polycomb Repressive Complex 2; Retina; Retinal Ganglion Cells

2010
SET7/9 catalytic mutants reveal the role of active site water molecules in lysine multiple methylation.
    The Journal of biological chemistry, 2010, Oct-08, Volume: 285, Issue:41

    Topics: Amino Acid Substitution; Catalysis; Catalytic Domain; Crystallography, X-Ray; Histone-Lysine N-Methyltransferase; Humans; Lysine; Methylation; Mutation, Missense; Water

2010
Heterochromatin formation in the mouse embryo requires critical residues of the histone variant H3.3.
    Nature cell biology, 2010, Volume: 12, Issue:9

    Topics: Amino Acid Substitution; Animals; Blastocyst; Chromatin; Chromosomal Proteins, Non-Histone; Chromosome Segregation; DNA, Satellite; Embryo, Mammalian; Embryonic Development; Epigenesis, Genetic; Female; Genetic Variation; Heterochromatin; Histones; Lysine; Male; Methylation; Mice; Mice, Inbred C57BL; Mice, Inbred CBA; Recombinant Fusion Proteins; RNA, Double-Stranded; RNA, Messenger; Time Factors; Zygote

2010
A lysine-rich region in Dot1p is crucial for direct interaction with H2B ubiquitylation and high level methylation of H3K79.
    Biochemical and biophysical research communications, 2010, Sep-03, Volume: 399, Issue:4

    Topics: Gene Silencing; Histone-Lysine N-Methyltransferase; Histones; Lysine; Methylation; Nuclear Proteins; Nucleosomes; Point Mutation; Saccharomyces cerevisiae Proteins; Sequence Deletion; Ubiquitin; Ubiquitination

2010
Requirement for the phospho-H2AX binding module of Crb2 in double-strand break targeting and checkpoint activation.
    Molecular and cellular biology, 2010, Volume: 30, Issue:19

    Topics: Binding Sites; Blotting, Western; Cell Cycle; Cell Cycle Proteins; Chromatin; DNA Breaks, Double-Stranded; DNA Damage; DNA Repair; Histones; Lysine; Methylation; Mutation; Nuclear Proteins; Phosphoproteins; Phosphorylation; Protein Binding; Schizosaccharomyces; Schizosaccharomyces pombe Proteins; Threonine

2010
Overexpression of EZH2 contributes to acquired cisplatin resistance in ovarian cancer cells in vitro and in vivo.
    Cancer biology & therapy, 2010, Oct-15, Volume: 10, Issue:8

    Topics: Animals; Antineoplastic Agents; Blotting, Western; Cell Line, Tumor; Cell Survival; Cisplatin; DNA-Binding Proteins; Dose-Response Relationship, Drug; Drug Resistance, Neoplasm; Enhancer of Zeste Homolog 2 Protein; Female; Gene Expression Regulation, Neoplastic; Histones; Humans; Lysine; Methylation; Mice; Mice, Inbred BALB C; Mice, Nude; Ovarian Neoplasms; Polycomb Repressive Complex 2; Reverse Transcriptase Polymerase Chain Reaction; RNA Interference; Transcription Factors; Tumor Burden; Xenograft Model Antitumor Assays

2010
Defining the epigenetic actions of growth hormone: acute chromatin changes accompany GH-activated gene transcription.
    Molecular endocrinology (Baltimore, Md.), 2010, Volume: 24, Issue:10

    Topics: Animals; Chromatin; Epigenesis, Genetic; Growth Hormone; Histones; Humans; Lysine; Male; Methylation; Promoter Regions, Genetic; Proto-Oncogene Proteins c-bcl-6; Rats; Rats, Sprague-Dawley; STAT5 Transcription Factor; Transcription, Genetic

2010
MLL2 is required in oocytes for bulk histone 3 lysine 4 trimethylation and transcriptional silencing.
    PLoS biology, 2010, Aug-17, Volume: 8, Issue:8

    Topics: Animals; Epigenomics; Female; Gene Expression Regulation, Developmental; Histone-Lysine N-Methyltransferase; Histones; Lysine; Methylation; Methyltransferases; Mice; Mice, Inbred C57BL; Mice, Knockout; Myeloid-Lymphoid Leukemia Protein; Oocytes; Oogenesis

2010
Extensive lysine methylation in hyperthermophilic crenarchaea: potential implications for protein stability and recombinant enzymes.
    Archaea (Vancouver, B.C.), 2010, Aug-05, Volume: 2010

    Topics: Archaeal Proteins; Biotechnology; DNA-Directed RNA Polymerases; Lysine; Methylation; Models, Molecular; Protein Methyltransferases; Protein Stability; Protein Structure, Quaternary; Protein Structure, Tertiary; Recombinant Proteins; Substrate Specificity; Sulfolobus solfataricus; Thermoproteus

2010
FK228 induces mitotic catastrophe in A549 cells by mistargeting chromosomal passenger complex localization through changing centromeric H3K9 hypoacetylation.
    Acta biochimica et biophysica Sinica, 2010, Volume: 42, Issue:10

    Topics: Acetylation; Antibiotics, Antineoplastic; Autoantigens; Blotting, Western; Cell Line, Tumor; Cell Survival; Centromere; Centromere Protein A; Chromosomal Proteins, Non-Histone; Depsipeptides; Histones; Humans; Lysine; Methylation; Microscopy, Fluorescence; Mitosis; Phosphorylation; Serine; Spindle Apparatus; Time Factors

2010
Phosphorylation of MLL by ATR is required for execution of mammalian S-phase checkpoint.
    Nature, 2010, Sep-16, Volume: 467, Issue:7313

    Topics: Alleles; Animals; Ataxia Telangiectasia Mutated Proteins; Cell Cycle Proteins; Cell Line; Chromatin; DNA Damage; DNA Replication; Genes, Dominant; Genomic Instability; Histone-Lysine N-Methyltransferase; Histones; Humans; Leukemia; Lysine; Methylation; Mice; Myeloid Progenitor Cells; Myeloid-Lymphoid Leukemia Protein; Phosphorylation; Phosphoserine; Protein Binding; Protein Serine-Threonine Kinases; S Phase; S-Phase Kinase-Associated Proteins; Signal Transduction; Translocation, Genetic

2010
The histone H3K36 methyltransferase MES-4 acts epigenetically to transmit the memory of germline gene expression to progeny.
    PLoS genetics, 2010, Sep-02, Volume: 6, Issue:9

    Topics: Animals; Binding Sites; Biocatalysis; Caenorhabditis elegans; Caenorhabditis elegans Proteins; Embryo, Nonmammalian; Epigenesis, Genetic; Female; Gene Expression Regulation, Developmental; Genes, Helminth; Germ Cells; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Histones; Lysine; Methylation; Open Reading Frames; Protein Binding; RNA Interference; RNA Polymerase II; X Chromosome

2010
Systematic identification of methyllysine-driven interactions for histone and nonhistone targets.
    Journal of proteome research, 2010, Nov-05, Volume: 9, Issue:11

    Topics: Chromobox Protein Homolog 5; Epigenomics; Histones; Humans; Lysine; Methylation; Protein Array Analysis; Protein Binding; Tumor Suppressor Protein p53

2010
The Plant Homeo Domain finger protein, VIN3-LIKE 2, is necessary for photoperiod-mediated epigenetic regulation of the floral repressor, MAF5.
    Proceedings of the National Academy of Sciences of the United States of America, 2010, Sep-28, Volume: 107, Issue:39

    Topics: Arabidopsis; Arabidopsis Proteins; Chromatin; Epigenesis, Genetic; Flowers; Gene Expression Regulation, Plant; Histones; Homeodomain Proteins; Lysine; Methylation; Photoperiod; Repressor Proteins

2010
Role for the nuclear receptor-binding SET domain protein 1 (NSD1) methyltransferase in coordinating lysine 36 methylation at histone 3 with RNA polymerase II function.
    Proceedings of the National Academy of Sciences of the United States of America, 2010, Sep-28, Volume: 107, Issue:39

    Topics: Bone Morphogenetic Protein 4; Butyrate Response Factor 1; Gene Expression Regulation; Gene Knockdown Techniques; Gene Regulatory Networks; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Histones; Humans; Intracellular Signaling Peptides and Proteins; Lysine; Methylation; Methyltransferases; Nuclear Proteins; Promoter Regions, Genetic; RNA Polymerase II

2010
Ornithine decarboxylase antizyme induces hypomethylation of genome DNA and histone H3 lysine 9 dimethylation (H3K9me2) in human oral cancer cell line.
    PloS one, 2010, Sep-03, Volume: 5, Issue:9

    Topics: Cell Line, Tumor; DNA; DNA (Cytosine-5-)-Methyltransferases; DNA Methylation; DNA Methyltransferase 3B; Histones; Humans; Lysine; Methylation; Mouth Neoplasms; Proteins

2010
Quantitative interaction proteomics and genome-wide profiling of epigenetic histone marks and their readers.
    Cell, 2010, Sep-17, Volume: 142, Issue:6

    Topics: Chromatin; Epigenesis, Genetic; Gene Expression Regulation; Genome-Wide Association Study; HeLa Cells; Histone Acetyltransferases; Histone Code; Humans; Lysine; Mass Spectrometry; Methylation; Proteomics

2010
In situ chemical modification of peptide microarrays: application to the study of the antibody responses to methylated antigens.
    Methods in molecular biology (Clifton, N.J.), 2010, Volume: 669

    Topics: Alkylation; Amines; Amino Acid Sequence; Animals; Antibodies; Bacterial Proteins; Borohydrides; Formaldehyde; Glass; Lectins; Lysine; Methylation; Mice; Microscopy; Molecular Sequence Data; Mycobacterium tuberculosis; Nickel; Peptide Fragments; Printing; Protein Array Analysis

2010
Polycomb group protein displacement and gene activation through MSK-dependent H3K27me3S28 phosphorylation.
    Molecular cell, 2010, Sep-24, Volume: 39, Issue:6

    Topics: Activating Transcription Factor 3; Anisomycin; Antibodies; Cell Differentiation; Cell Line, Tumor; Chromatin; DNA Damage; Embryonic Stem Cells; Fibroblasts; Gene Expression; Gene Expression Regulation; HeLa Cells; Histones; Humans; Lysine; Methylation; Mitosis; Neurons; Peptides; Phosphorylation; Polycomb-Group Proteins; Promoter Regions, Genetic; Protein Binding; Protein Transport; Repressor Proteins; Ribosomal Protein S6 Kinases, 90-kDa; Serine

2010
The MBT repeats of L3MBTL1 link SET8-mediated p53 methylation at lysine 382 to target gene repression.
    The Journal of biological chemistry, 2010, Nov-26, Volume: 285, Issue:48

    Topics: Amino Acid Sequence; Apoptosis Regulatory Proteins; Cell Line; Chromosomal Proteins, Non-Histone; Cyclin-Dependent Kinase Inhibitor p21; Gene Expression Regulation; Histone-Lysine N-Methyltransferase; Humans; Lysine; Methylation; Neoplasm Proteins; Protein Binding; Protein Structure, Tertiary; Proto-Oncogene Proteins; Repressor Proteins; Tumor Suppressor Protein p53; Tumor Suppressor Proteins

2010
Cell-specific occupancy of an extended repertoire of CREM and CREB binding loci in male germ cells.
    BMC genomics, 2010, Sep-29, Volume: 11

    Topics: Animals; Binding Sites; Cell Line; Chromatin Immunoprecipitation; Chromosomes, Mammalian; Cyclic AMP Response Element Modulator; Cyclic AMP Response Element-Binding Protein; Gene Expression Regulation; Genetic Loci; Haploidy; Histones; Lysine; Male; Methylation; Mice; MicroRNAs; Organ Specificity; Promoter Regions, Genetic; RNA, Messenger; Spermatids; Spermatozoa; Testis

2010
Promoter-exon relationship of H3 lysine 9, 27, 36 and 79 methylation on pluripotency-associated genes.
    Biochemical and biophysical research communications, 2010, Oct-29, Volume: 401, Issue:4

    Topics: Cell Line, Tumor; Exons; Gene Expression Regulation; Histones; Homeodomain Proteins; Humans; Lysine; Methylation; Nanog Homeobox Protein; Octamer Transcription Factor-3; Pluripotent Stem Cells; Promoter Regions, Genetic; SOXB1 Transcription Factors

2010
Influence of lysine N(ε)-trimethylation and lipid composition on the membrane activity of the cecropin A-melittin hybrid peptide CA(1-7)M(2-9).
    The journal of physical chemistry. B, 2010, Dec-16, Volume: 114, Issue:49

    Topics: Amino Acid Sequence; Antimicrobial Cationic Peptides; Calorimetry, Differential Scanning; Lipids; Liposomes; Lysine; Methylation; Molecular Sequence Data; Thermodynamics

2010
H3K27me3 profiling of the endosperm implies exclusion of polycomb group protein targeting by DNA methylation.
    PLoS genetics, 2010, Oct-07, Volume: 6, Issue:10

    Topics: Arabidopsis; Arabidopsis Proteins; Cluster Analysis; DNA Methylation; DNA Transposable Elements; Endosperm; Flow Cytometry; Gene Expression Profiling; Gene Expression Regulation, Plant; Genome, Plant; Green Fluorescent Proteins; Histones; Lysine; Methylation; Microscopy, Fluorescence; Mutation; Oligonucleotide Array Sequence Analysis; Plants, Genetically Modified; Polycomb-Group Proteins; Repressor Proteins; Reverse Transcriptase Polymerase Chain Reaction; Transcription Factors

2010
Epigenetic antagonism between polycomb and SWI/SNF complexes during oncogenic transformation.
    Cancer cell, 2010, Oct-19, Volume: 18, Issue:4

    Topics: Animals; Cell Line, Tumor; Cell Lineage; Cell Proliferation; Cell Transformation, Neoplastic; Chromosomal Proteins, Non-Histone; Cyclin-Dependent Kinase Inhibitor p16; Embryo, Mammalian; Enhancer of Zeste Homolog 2 Protein; Epigenesis, Genetic; Fibroblasts; Gene Silencing; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation; Mice; Models, Genetic; Polycomb Repressive Complex 2; Polycomb-Group Proteins; Repressor Proteins; SMARCB1 Protein; Stem Cells; T-Lymphocytes; Transcription, Genetic; Up-Regulation

2010
Regulation of the androgen receptor by SET9-mediated methylation.
    Nucleic acids research, 2011, Volume: 39, Issue:4

    Topics: Active Transport, Cell Nucleus; Cell Line, Tumor; Cell Nucleus; Cell Proliferation; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Male; Methylation; Prostate-Specific Antigen; Prostatic Neoplasms; Receptors, Androgen; Transcriptional Activation

2011
Calmodulin methyltransferase is an evolutionarily conserved enzyme that trimethylates Lys-115 in calmodulin.
    Nature communications, 2010, Jul-27, Volume: 1

    Topics: Amino Acid Sequence; Animals; Calmodulin; Chromatography, Liquid; Chromatography, Thin Layer; Electrophoresis, Polyacrylamide Gel; Humans; Insect Proteins; Lysine; Methylation; Methyltransferases; Molecular Sequence Data; Plant Proteins; Protein Processing, Post-Translational; Protein Structure, Secondary; Rats; Sequence Homology, Amino Acid; Tandem Mass Spectrometry

2010
Epigenetically deregulated microRNA-375 is involved in a positive feedback loop with estrogen receptor alpha in breast cancer cells.
    Cancer research, 2010, Nov-15, Volume: 70, Issue:22

    Topics: Base Sequence; Binding Sites; Breast Neoplasms; CCCTC-Binding Factor; Cell Line; Cell Line, Tumor; Cell Proliferation; CpG Islands; DNA Methylation; Epigenesis, Genetic; Estrogen Receptor alpha; Feedback, Physiological; Gene Expression Profiling; Gene Expression Regulation, Neoplastic; HEK293 Cells; Histones; Humans; Immunoblotting; Lysine; Methylation; MicroRNAs; Molecular Sequence Data; Oligonucleotide Array Sequence Analysis; ras Proteins; Repressor Proteins; RNA Interference

2010
Aberrantly silenced promoters retain a persistent memory of the silenced state after long-term reactivation.
    Mutation research, 2011, Jan-10, Volume: 706, Issue:1-2

    Topics: Adenine Phosphoribosyltransferase; Animals; Azacitidine; Cell Line, Tumor; Chromatin Immunoprecipitation; CpG Islands; Decitabine; DNA Methylation; DNA Modification Methylases; Gene Expression Regulation, Neoplastic; Histone Deacetylase Inhibitors; Histones; Hydroxamic Acids; Lysine; Methylation; Mice; Promoter Regions, Genetic; Reverse Transcriptase Polymerase Chain Reaction; Time Factors

2011
Drosophila vigilin, DDP1, localises to the cytoplasm and associates to the rough endoplasmic reticulum.
    Biochimica et biophysica acta, 2011, Volume: 1809, Issue:1

    Topics: Animals; Animals, Genetically Modified; Blotting, Western; Cells, Cultured; Cytoplasm; DNA-Binding Proteins; Drosophila melanogaster; Drosophila Proteins; Embryo, Nonmammalian; Endoplasmic Reticulum, Rough; Female; Green Fluorescent Proteins; Heterochromatin; Histones; Immunohistochemistry; Lysine; Male; Methylation; Microscopy, Immunoelectron; Mutation; Protein Binding; Ribosomal Proteins; RNA Interference; RNA-Binding Proteins; Schizosaccharomyces; Schizosaccharomyces pombe Proteins

2011
Genetically directing ɛ-N, N-dimethyl-L-lysine in recombinant histones.
    Chemistry & biology, 2010, Oct-29, Volume: 17, Issue:10

    Topics: Chromobox Protein Homolog 5; Chromosomal Proteins, Non-Histone; Histones; Immunoprecipitation; Lysine; Methylation; Protein Processing, Post-Translational; Recombinant Proteins

2010
Global epigenomic analysis of primary human pancreatic islets provides insights into type 2 diabetes susceptibility loci.
    Cell metabolism, 2010, Nov-03, Volume: 12, Issue:5

    Topics: CCCTC-Binding Factor; Deoxyribonuclease I; Diabetes Mellitus, Type 2; Epigenomics; Genetic Loci; Genome-Wide Association Study; HeLa Cells; Histones; Humans; Islets of Langerhans; Lysine; Methylation; Promoter Regions, Genetic; Regulatory Sequences, Nucleic Acid; Repressor Proteins

2010
Female-biased expression of long non-coding RNAs in domains that escape X-inactivation in mouse.
    BMC genomics, 2010, Nov-03, Volume: 11

    Topics: Animals; Brain; Female; Gene Expression Profiling; Gene Expression Regulation; Genes, X-Linked; Histones; Lysine; Male; Methylation; Mice; Multigene Family; Oligonucleotide Array Sequence Analysis; Open Reading Frames; Organ Specificity; Reproducibility of Results; Reverse Transcriptase Polymerase Chain Reaction; RNA, Untranslated; Sex Characteristics; X Chromosome; X Chromosome Inactivation

2010
Dynamic changes in genome-wide histone H3 lysine 4 methylation patterns in response to dehydration stress in Arabidopsis thaliana.
    BMC plant biology, 2010, Nov-05, Volume: 10

    Topics: Abscisic Acid; Arabidopsis; Chromatin Immunoprecipitation; Dehydration; Gene Expression Profiling; Genome, Plant; High-Throughput Nucleotide Sequencing; Histones; Lysine; Methylation; Plant Growth Regulators; Stress, Physiological

2010
Altering a histone H3K4 methylation pathway in glomerular podocytes promotes a chronic disease phenotype.
    PLoS genetics, 2010, Oct-28, Volume: 6, Issue:10

    Topics: Animals; Carrier Proteins; Chronic Disease; DNA-Binding Proteins; Female; Gene Expression Profiling; Histones; Kidney; Kidney Diseases; Kidney Glomerulus; Lysine; Male; Methylation; Mice; Mice, Knockout; Microscopy, Electron, Scanning; Microscopy, Electron, Transmission; Microscopy, Fluorescence; Mutation; Nuclear Proteins; Oligonucleotide Array Sequence Analysis; Podocytes; Receptor, trkC; Reverse Transcriptase Polymerase Chain Reaction; Signal Transduction

2010
Continuous requirement for the Clr4 complex but not RNAi for centromeric heterochromatin assembly in fission yeast harboring a disrupted RITS complex.
    PLoS genetics, 2010, Oct-28, Volume: 6, Issue:10

    Topics: Argonaute Proteins; Carrier Proteins; Cell Cycle Proteins; Centromere; Chromatin Immunoprecipitation; Chromosomal Proteins, Non-Histone; Cullin Proteins; Heterochromatin; Histone-Lysine N-Methyltransferase; Histones; Lysine; Methylation; Methyltransferases; Mutation; RNA Interference; RNA-Binding Proteins; Schizosaccharomyces; Schizosaccharomyces pombe Proteins

2010
DSIF and RNA polymerase II CTD phosphorylation coordinate the recruitment of Rpd3S to actively transcribed genes.
    PLoS genetics, 2010, Oct-28, Volume: 6, Issue:10

    Topics: Chromatin Immunoprecipitation; Chromosomal Proteins, Non-Histone; Cyclin-Dependent Kinases; Gene Expression Profiling; Gene Expression Regulation, Fungal; Histone Deacetylases; Histones; Isoenzymes; Lysine; Methylation; Methyltransferases; Mutation; Nuclear Proteins; Oligonucleotide Array Sequence Analysis; Open Reading Frames; Phosphorylation; Protein Binding; Protein Kinases; RNA Polymerase II; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins; Transcription, Genetic; Transcriptional Elongation Factors

2010
Stress-induced activation of heterochromatic transcription.
    PLoS genetics, 2010, Oct-28, Volume: 6, Issue:10

    Topics: Arabidopsis; Cold Temperature; Gene Expression Profiling; Glucuronidase; Heterochromatin; Histones; Lysine; Methylation; Oligonucleotide Array Sequence Analysis; Plants, Genetically Modified; Reverse Transcriptase Polymerase Chain Reaction; Seedlings; Sodium Chloride; Stress, Physiological; Temperature; Time Factors; Transcription, Genetic; Transcriptional Activation

2010
MiR-138 inhibits EZH2 methyltransferase expression and methylation of histone H3 at lysine 27, and affects thermotolerance acquisition.
    The European journal of neuroscience, 2011, Volume: 33, Issue:2

    Topics: Animals; Body Temperature Regulation; Chickens; Histone-Lysine N-Methyltransferase; Histones; Hot Temperature; Hypothalamus, Anterior; Lysine; Male; Methylation; MicroRNAs; Preoptic Area

2011
Structural studies of the tandem Tudor domains of fragile X mental retardation related proteins FXR1 and FXR2.
    PloS one, 2010, Nov-02, Volume: 5, Issue:11

    Topics: Amino Acid Sequence; Binding Sites; Computer Simulation; Crystallography, X-Ray; Fragile X Mental Retardation Protein; Histones; Humans; Lysine; Magnetic Resonance Spectroscopy; Methylation; Models, Molecular; Molecular Sequence Data; Nuclear Localization Signals; Protein Binding; Protein Structure, Tertiary; RNA-Binding Proteins; Sequence Homology, Amino Acid; Tandem Repeat Sequences

2010
RNA polymerase II binding patterns reveal genomic regions involved in microRNA gene regulation.
    PloS one, 2010, Nov-02, Volume: 5, Issue:11

    Topics: Algorithms; Cell Line, Tumor; Chromatin Immunoprecipitation; Computational Biology; CpG Islands; Gene Expression Regulation; Histones; Humans; Lysine; Methylation; MicroRNAs; Promoter Regions, Genetic; Protein Binding; Regulatory Sequences, Nucleic Acid; RNA Polymerase II; Transcription Initiation Site; Transcription, Genetic

2010
Coordinated activities of wild-type plus mutant EZH2 drive tumor-associated hypertrimethylation of lysine 27 on histone H3 (H3K27) in human B-cell lymphomas.
    Proceedings of the National Academy of Sciences of the United States of America, 2010, Dec-07, Volume: 107, Issue:49

    Topics: Catalysis; DNA-Binding Proteins; Enhancer of Zeste Homolog 2 Protein; Histones; Humans; Kinetics; Lymphoma, B-Cell; Lysine; Methylation; Point Mutation; Polycomb Repressive Complex 2; Transcription Factors

2010
Changes to euchromatin on LAT and ICP4 following reactivation are more prevalent in an efficiently reactivating strain of HSV-1.
    PloS one, 2010, Nov-04, Volume: 5, Issue:11

    Topics: Adrenergic Agonists; Animals; Chromatin Assembly and Disassembly; Cornea; Epinephrine; Euchromatin; Exons; Herpesvirus 1, Human; Histones; Humans; Immediate-Early Proteins; Lysine; Methylation; MicroRNAs; Promoter Regions, Genetic; Rabbits; Reverse Transcriptase Polymerase Chain Reaction; RNA, Viral; Time Factors; Trigeminal Ganglion; Virus Activation

2010
Reversible methylation of promoter-bound STAT3 by histone-modifying enzymes.
    Proceedings of the National Academy of Sciences of the United States of America, 2010, Dec-14, Volume: 107, Issue:50

    Topics: Active Transport, Cell Nucleus; Cell Line; Histone Demethylases; Histone-Lysine N-Methyltransferase; Histones; Humans; Interleukin-6; Lysine; Methylation; Promoter Regions, Genetic; STAT3 Transcription Factor; Suppressor of Cytokine Signaling 3 Protein; Suppressor of Cytokine Signaling Proteins

2010
Histone H3 trimethylation at lysine 9 marks the inactive metaphase X chromosome in the marsupial Monodelphis domestica.
    Chromosoma, 2011, Volume: 120, Issue:2

    Topics: Animals; Cell Line; Chromatin; Female; Histones; Lysine; Male; Metaphase; Methylation; Monodelphis; X Chromosome; X Chromosome Inactivation

2011
Interplay between lysine methylation and Cdk phosphorylation in growth control by the retinoblastoma protein.
    The EMBO journal, 2011, Jan-19, Volume: 30, Issue:2

    Topics: Cell Cycle; Cell Line, Tumor; Chromatin Immunoprecipitation; Cyclin-Dependent Kinases; Flow Cytometry; Humans; Immunoblotting; Immunoprecipitation; Luciferases; Lysine; Mass Spectrometry; Methylation; Models, Molecular; Phosphorylation; Protein Binding; Retinoblastoma Protein

2011
Essential functions of the histone demethylase lid.
    PLoS genetics, 2010, Nov-24, Volume: 6, Issue:11

    Topics: Animals; DNA-Binding Proteins; Drosophila melanogaster; Drosophila Proteins; Enzyme Activation; Eye; Genome; Histone Demethylases; Histone-Lysine N-Methyltransferase; Histones; Lysine; Male; Methylation; Mutation; Paraquat; Protein Binding; Protein Structure, Tertiary; Sequence Deletion; Time Factors; Transcription Factors; Transgenes; Zinc Fingers

2010
CTCF-dependent chromatin bias constitutes transient epigenetic memory of the mother at the H19-Igf2 imprinting control region in prospermatogonia.
    PLoS genetics, 2010, Nov-24, Volume: 6, Issue:11

    Topics: Alleles; Animals; CCCTC-Binding Factor; Chromatin; DNA Methylation; Female; Fetus; Genomic Imprinting; Histones; Insulin-Like Growth Factor II; Lysine; Male; Methylation; Mice; Models, Biological; Mutation; Protein Binding; Repressor Proteins; Reproducibility of Results; RNA, Long Noncoding; RNA, Untranslated; Sequence Analysis, DNA; Spermatogonia; Sulfites

2010
Quantitative high-throughput screening identifies 8-hydroxyquinolines as cell-active histone demethylase inhibitors.
    PloS one, 2010, Nov-23, Volume: 5, Issue:11

    Topics: Biocatalysis; Dose-Response Relationship, Drug; Drug Evaluation, Preclinical; Enzyme Inhibitors; HeLa Cells; Histones; Humans; Hydroxyquinolines; Jumonji Domain-Containing Histone Demethylases; Lysine; Mass Spectrometry; Methylation; Molecular Structure

2010
An Ash2L/RbBP5 heterodimer stimulates the MLL1 methyltransferase activity through coordinated substrate interactions with the MLL1 SET domain.
    PloS one, 2010, Nov-23, Volume: 5, Issue:11

    Topics: Binding Sites; DNA-Binding Proteins; HeLa Cells; Histone-Lysine N-Methyltransferase; Histones; Humans; Immunoprecipitation; Lysine; Methylation; Methyltransferases; Models, Biological; Mutation; Myeloid-Lymphoid Leukemia Protein; Nuclear Proteins; Protein Binding; Protein Multimerization; RNA Interference; S-Adenosylmethionine; Substrate Specificity; Transcription Factors

2010
Ectopic T cell receptor-α locus control region activity in B cells is suppressed by direct linkage to two flanking genes at once.
    PloS one, 2010, Nov-22, Volume: 5, Issue:11

    Topics: Animals; Apoptosis Regulatory Proteins; B-Lymphocytes; CD2 Antigens; Flow Cytometry; Gene Expression Regulation; Histones; HLA-B7 Antigen; Humans; Locus Control Region; Lymphoid Tissue; Lysine; Membrane Proteins; Methylation; Mice; Mice, Transgenic; Promoter Regions, Genetic; Receptors, Antigen, T-Cell, alpha-beta; Reverse Transcriptase Polymerase Chain Reaction; Spleen; Thymus Gland

2010
Identification of trimethylation at C-terminal lysine of pilin in the cyanobacterium Synechocystis PCC 6803.
    Biochemical and biophysical research communications, 2011, Jan-14, Volume: 404, Issue:2

    Topics: Amino Acid Sequence; Amino Acid Substitution; Fimbriae Proteins; Lysine; Methylation; Molecular Sequence Data; Mutagenesis, Site-Directed; Protein Processing, Post-Translational; Synechocystis

2011
CDK1-dependent phosphorylation of EZH2 suppresses methylation of H3K27 and promotes osteogenic differentiation of human mesenchymal stem cells.
    Nature cell biology, 2011, Volume: 13, Issue:1

    Topics: 2-Aminopurine; Carrier Proteins; CDC2 Protein Kinase; Cell Differentiation; Cell Line; Cell Line, Tumor; Cell Movement; DNA-Binding Proteins; Enhancer of Zeste Homolog 2 Protein; HEK293 Cells; HeLa Cells; Histone-Lysine N-Methyltransferase; Histones; Humans; Immunoblotting; Lysine; Mesenchymal Stem Cells; Methylation; Neoplasm Proteins; Nuclear Proteins; Osteoblasts; Phosphorylation; Polycomb Repressive Complex 2; Protein Binding; Repressor Proteins; RNA Interference; Threonine; Transcription Factors

2011
Proteomic characterization of archaeal ribosomes reveals the presence of novel archaeal-specific ribosomal proteins.
    Journal of molecular biology, 2011, Feb-04, Volume: 405, Issue:5

    Topics: Archaeal Proteins; Binding Sites; Lysine; Methylation; Nucleoside-Triphosphatase; Phylogeny; Proteomics; Pyrobaculum; Ribosomal Proteins; Ribosomes; Sulfolobus acidocaldarius

2011
Histone3 lysine4 trimethylation regulated by the facilitates chromatin transcription complex is critical for DNA cleavage in class switch recombination.
    Proceedings of the National Academy of Sciences of the United States of America, 2010, Dec-21, Volume: 107, Issue:51

    Topics: Animals; B-Lymphocytes; Cell Line; Chromatin; Cytidine Deaminase; DNA; DNA-Binding Proteins; Evolution, Molecular; High Mobility Group Proteins; Histones; Immunoglobulin Class Switching; Lysine; Meiosis; Methylation; Mice; Transcription, Genetic; VDJ Recombinases

2010
Autoinhibition of DNA cleavage mediated by RAG1 and RAG2 is overcome by an epigenetic signal in V(D)J recombination.
    Proceedings of the National Academy of Sciences of the United States of America, 2010, Dec-28, Volume: 107, Issue:52

    Topics: Animals; Binding Sites; DNA Cleavage; DNA-Binding Proteins; Electrophoresis, Polyacrylamide Gel; Electrophoretic Mobility Shift Assay; Epigenomics; HEK293 Cells; Histones; Homeodomain Proteins; Humans; Lysine; Methylation; Mice; Mutation; Protein Binding; Protein Multimerization; Recombination, Genetic; Signal Transduction; VDJ Exons

2010
L3MBTL1 polycomb protein, a candidate tumor suppressor in del(20q12) myeloid disorders, is essential for genome stability.
    Proceedings of the National Academy of Sciences of the United States of America, 2010, Dec-28, Volume: 107, Issue:52

    Topics: Blotting, Western; Cell Cycle; Cell Line; Cell Line, Tumor; Cell Proliferation; Chromosomal Proteins, Non-Histone; Chromosome Deletion; Chromosomes, Human, Pair 20; DNA Damage; DNA Replication; Genomic Instability; HEK293 Cells; Histones; Humans; Immunoprecipitation; K562 Cells; Lysine; Methylation; Myeloproliferative Disorders; Neoplasm Proteins; Protein Binding; Repressor Proteins; Retinoblastoma Protein; RNA Interference; Tumor Suppressor Proteins

2010
A methylation and phosphorylation switch between an adjacent lysine and serine determines human DNMT1 stability.
    Nature structural & molecular biology, 2011, Volume: 18, Issue:1

    Topics: Crystallography, X-Ray; DNA (Cytosine-5-)-Methyltransferase 1; DNA (Cytosine-5-)-Methyltransferases; DNA Methylation; Genome, Human; Histone-Lysine N-Methyltransferase; Humans; Lysine; Methylation; Models, Molecular; Phosphorylation; Protein Stability; Protein Structure, Tertiary; Proto-Oncogene Proteins c-akt; Serine

2011
Lysine methylation of promoter-bound transcription factors and relevance to cancer.
    Cell research, 2011, Volume: 21, Issue:3

    Topics: DNA; Histone-Lysine N-Methyltransferase; Humans; Lysine; Methylation; Neoplasms; NF-kappa B; Promoter Regions, Genetic; STAT3 Transcription Factor

2011
CpG array analysis of histone H3 lysine 4 trimethylation in peripheral blood mononuclear cells of uremia patients.
    DNA and cell biology, 2011, Volume: 30, Issue:3

    Topics: Adult; Basic Helix-Loop-Helix Transcription Factors; CpG Islands; DNA Methylation; Female; Histones; Humans; Leukocytes, Mononuclear; Lysine; Male; Methylation; Microarray Analysis; Middle Aged; Phospholipid Transfer Proteins; Receptors, KIR3DL2; Receptors, Lysosphingolipid; Sphingosine-1-Phosphate Receptors; Transcription Factors; Uremia

2011
Histone H3 lysine 79 methyltransferase Dot1 is required for immortalization by MLL oncogenes.
    Cancer research, 2010, Dec-15, Volume: 70, Issue:24

    Topics: Animals; Apoptosis; Cell Transformation, Neoplastic; Hematopoietic Stem Cells; Histone-Lysine N-Methyltransferase; Histones; Leukemia, Experimental; Lysine; Methylation; Methyltransferases; Mice; Myeloid-Lymphoid Leukemia Protein

2010
A unique chromatin signature uncovers early developmental enhancers in humans.
    Nature, 2011, Feb-10, Volume: 470, Issue:7333

    Topics: Acetylation; Animals; Cell Differentiation; Cell Line; Chromatin; Chromatin Immunoprecipitation; DNA Helicases; Embryonic Development; Embryonic Stem Cells; Enhancer Elements, Genetic; Epigenesis, Genetic; Gastrulation; Gene Expression Regulation, Developmental; Germ Layers; Histones; Humans; Lysine; Mesoderm; Methylation; Neural Plate; Neurulation; Nuclear Proteins; p300-CBP Transcription Factors; RNA; Transcription Factors; Zebrafish

2011
Tiling histone H3 lysine 4 and 27 methylation in zebrafish using high-density microarrays.
    PloS one, 2010, Dec-20, Volume: 5, Issue:12

    Topics: Animals; Chromatin; DNA Methylation; Epigenesis, Genetic; Fibroblasts; Gene Expression Regulation; Histones; Humans; Immunoprecipitation; Lysine; Methylation; Mice; Oligonucleotide Array Sequence Analysis; Promoter Regions, Genetic; Zebrafish

2010
Role for cohesin in the formation of a heterochromatic domain at fission yeast subtelomeres.
    Molecular and cellular biology, 2011, Volume: 31, Issue:5

    Topics: Cell Cycle Proteins; Centromere; Chromosomal Proteins, Non-Histone; Cohesins; Down-Regulation; Euchromatin; Gene Expression Profiling; Gene Expression Regulation, Fungal; Gene Silencing; Heterochromatin; Lysine; Methylation; Mutation; Nuclear Proteins; Phosphoproteins; Schizosaccharomyces; Schizosaccharomyces pombe Proteins; Telomere; Up-Regulation

2011
Exploring the use of dimethylsulfate for in vivo proteome footprinting.
    Proteomics, 2011, Volume: 11, Issue:2

    Topics: Amino Acid Sequence; Animals; Chromatin; Glutamic Acid; HeLa Cells; Histidine; Histones; Humans; Lysine; Methylation; Molecular Sequence Data; Protein Folding; Protein Multimerization; Proteome; Proteomics; Sulfuric Acid Esters; Xenopus

2011
Overexpression of Enhancer of zeste homolog 2 with trimethylation of lysine 27 on histone H3 in adult T-cell leukemia/lymphoma as a target for epigenetic therapy.
    Haematologica, 2011, Volume: 96, Issue:5

    Topics: Adenosine; Base Sequence; Blotting, Western; CD4-Positive T-Lymphocytes; Cell Line, Tumor; Cell Proliferation; DNA-Binding Proteins; Enhancer of Zeste Homolog 2 Protein; Epigenomics; Gene Expression Profiling; Gene Expression Regulation, Leukemic; Histones; Humans; Hydroxamic Acids; Indoles; Intracellular Signaling Peptides and Proteins; Leukemia-Lymphoma, Adult T-Cell; Lysine; Methylation; MicroRNAs; Oligonucleotide Array Sequence Analysis; Panobinostat; Polycomb Repressive Complex 1; Polycomb Repressive Complex 2; Repressor Proteins; Reverse Transcriptase Polymerase Chain Reaction; Transcription Factors

2011
Identification of lysine 37 of histone H2B as a novel site of methylation.
    PloS one, 2011, Jan-13, Volume: 6, Issue:1

    Topics: Histone Code; Histones; Lysine; Mass Spectrometry; Methylation; Protein Processing, Post-Translational; Saccharomyces cerevisiae

2011
Dynamic BRG1 recruitment during T helper differentiation and activation reveals distal regulatory elements.
    Molecular and cellular biology, 2011, Volume: 31, Issue:7

    Topics: Animals; Binding Sites; Cell Differentiation; Cell Lineage; Chromatin; CpG Islands; DNA Helicases; Enhancer Elements, Genetic; GATA3 Transcription Factor; Histones; Lymphocyte Activation; Lymphocyte Subsets; Lysine; Methylation; Mice; Mice, Inbred BALB C; MicroRNAs; Nuclear Proteins; Organ Specificity; Promoter Regions, Genetic; Protein Binding; STAT Transcription Factors; T-Lymphocytes, Helper-Inducer; Transcription Factors; Transcription Initiation Site

2011
Symmetry, asymmetry, and kinetics of silencing establishment in Saccharomyces cerevisiae revealed by single-cell optical assays.
    Proceedings of the National Academy of Sciences of the United States of America, 2011, Jan-25, Volume: 108, Issue:4

    Topics: Biocatalysis; Cell Cycle; Chromatin; Gene Expression Regulation, Fungal; Gene Silencing; Green Fluorescent Proteins; Histone-Lysine N-Methyltransferase; Histones; Kinetics; Lysine; Methylation; Microscopy, Fluorescence; Mutation; Nuclear Proteins; Reverse Transcriptase Polymerase Chain Reaction; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins; Silent Information Regulator Proteins, Saccharomyces cerevisiae

2011
Selective targeting of histone methylation.
    Cell cycle (Georgetown, Tex.), 2011, Feb-01, Volume: 10, Issue:3

    Topics: Animals; Binding Sites; Cell Line; Chromosomal Proteins, Non-Histone; Drosophila melanogaster; Drosophila Proteins; Enhancer of Zeste Homolog 2 Protein; Epigenesis, Genetic; Gene Expression Regulation; Histone Demethylases; Histone-Lysine N-Methyltransferase; Histones; Humans; Jumonji Domain-Containing Histone Demethylases; Lysine; Methylation; Mice; Models, Genetic; Nerve Tissue Proteins; Nuclear Proteins; Polycomb Repressive Complex 2; Polycomb-Group Proteins; Protein Processing, Post-Translational; Repressor Proteins; Retinoblastoma-Binding Protein 2; Transcription, Genetic

2011
Lysine methylation and functional modulation of androgen receptor by Set9 methyltransferase.
    Molecular endocrinology (Baltimore, Md.), 2011, Volume: 25, Issue:3

    Topics: Blotting, Western; Cell Line, Tumor; Histone-Lysine N-Methyltransferase; Humans; Immunoprecipitation; Lysine; Methylation; Mutation; Receptors, Androgen

2011
Transcription-dependence of histone H3 lysine 27 trimethylation at the Arabidopsis polycomb target gene FLC.
    The Plant journal : for cell and molecular biology, 2011, Volume: 65, Issue:6

    Topics: Arabidopsis; Arabidopsis Proteins; Flowers; Gene Expression Regulation, Plant; Genes, Plant; Histones; Lysine; MADS Domain Proteins; Methylation; Mutation; Phenotype; Plants, Genetically Modified; Polycomb-Group Proteins; Promoter Regions, Genetic; Repressor Proteins; RNA, Messenger; RNA, Plant; Transcription, Genetic

2011
Role of PTIP in class switch recombination and long-range chromatin interactions at the immunoglobulin heavy chain locus.
    Molecular and cellular biology, 2011, Volume: 31, Issue:7

    Topics: Animals; B-Lymphocytes; Carrier Proteins; Chromatin; DNA-Binding Proteins; Gene Deletion; Gene Expression Regulation; Genes, Immunoglobulin Heavy Chain; Genetic Loci; HEK293 Cells; Histones; Humans; Immunoglobulin Class Switching; Lymphocyte Activation; Lysine; Methylation; Methyltransferases; Mice; Models, Genetic; Mutation; Nuclear Proteins; Nucleic Acid Conformation; PAX5 Transcription Factor; Protein Binding; Protein Transport; Recombination, Genetic

2011
Histone H4 Lys 20 monomethylation by histone methylase SET8 mediates Wnt target gene activation.
    Proceedings of the National Academy of Sciences of the United States of America, 2011, Feb-22, Volume: 108, Issue:8

    Topics: Animals; Basic Helix-Loop-Helix Leucine Zipper Transcription Factors; Biomarkers; Histone-Lysine N-Methyltransferase; Histones; Lymphoid Enhancer-Binding Factor 1; Lysine; Mammals; Methylation; Signal Transduction; Transcription Factor 4; Transcription Factors; Transcriptional Activation; Wnt Proteins; Wnt3 Protein; Wnt3A Protein; Zebrafish; Zebrafish Proteins

2011
The antioxidant protein peroxiredoxin 4 is epigenetically down regulated in acute promyelocytic leukemia.
    PloS one, 2011, Jan-20, Volume: 6, Issue:1

    Topics: Antioxidants; Down-Regulation; Epigenesis, Genetic; Granulocyte Colony-Stimulating Factor; Histones; Humans; Leukemia, Promyelocytic, Acute; Lysine; Methylation; Peroxiredoxins; Transcription Initiation Site

2011
MMSET regulates histone H4K20 methylation and 53BP1 accumulation at DNA damage sites.
    Nature, 2011, Feb-03, Volume: 470, Issue:7332

    Topics: Adaptor Proteins, Signal Transducing; Ataxia Telangiectasia Mutated Proteins; Cell Cycle Proteins; Chromatin Immunoprecipitation; DNA Breaks, Double-Stranded; DNA-Binding Proteins; HEK293 Cells; HeLa Cells; Histone-Lysine N-Methyltransferase; Histones; Humans; Intracellular Signaling Peptides and Proteins; Lysine; Methylation; Nuclear Proteins; Phosphorylation; Phosphoserine; Protein Serine-Threonine Kinases; Protein Transport; Repressor Proteins; Trans-Activators; Tumor Suppressor p53-Binding Protein 1; Tumor Suppressor Proteins

2011
Cocaine dynamically regulates heterochromatin and repetitive element unsilencing in nucleus accumbens.
    Proceedings of the National Academy of Sciences of the United States of America, 2011, Feb-15, Volume: 108, Issue:7

    Topics: Analysis of Variance; Animals; Base Sequence; Blotting, Western; Chromatin Immunoprecipitation; Cocaine; Cocaine-Related Disorders; DNA Primers; Gene Regulatory Networks; Genomic Instability; Heterochromatin; Histones; Immunohistochemistry; Long Interspersed Nucleotide Elements; Lysine; Methylation; Mice; Models, Statistical; Molecular Sequence Data; Nucleus Accumbens; Polymerase Chain Reaction; Reverse Transcriptase Polymerase Chain Reaction; Reward; Sequence Analysis, DNA

2011
Structure of the putative dihydroorotate dehydrogenase from Streptococcus mutans.
    Acta crystallographica. Section F, Structural biology and crystallization communications, 2011, Feb-01, Volume: 67, Issue:Pt 2

    Topics: Amino Acid Sequence; Binding Sites; Catalysis; Conserved Sequence; Crystallography, X-Ray; Dental Caries; Dihydroorotate Dehydrogenase; Dimerization; Escherichia coli; Flavin Mononucleotide; Histidine; Humans; Hydrophobic and Hydrophilic Interactions; Lysine; Methylation; Models, Molecular; Molecular Sequence Data; Orotic Acid; Oxidation-Reduction; Oxidoreductases Acting on CH-CH Group Donors; Protein Conformation; Protein Folding; Protein Structure, Quaternary; Protein Structure, Secondary; Protein Subunits; Pyrimidines; Recombinant Proteins; Sequence Homology, Amino Acid; Streptococcus mutans; Substrate Specificity; X-Ray Diffraction

2011
Genome-wide chromatin occupancy analysis reveals a role for ASH2 in transcriptional pausing.
    Nucleic acids research, 2011, Volume: 39, Issue:11

    Topics: Animals; Chromatin; Drosophila; Drosophila Proteins; Genome, Insect; Histones; Lysine; Methylation; Mutation; Nuclear Proteins; Phosphorylation; Promoter Regions, Genetic; RNA Polymerase II; Transcription Factors; Transcriptional Activation

2011
Methylation-mediated regulation of E2F1 in DNA damage-induced cell death.
    Journal of receptor and signal transduction research, 2011, Volume: 31, Issue:2

    Topics: Amino Acid Sequence; Cell Death; Cell Line; DNA Damage; E2F1 Transcription Factor; Gene Knockdown Techniques; Histone Demethylases; Histone-Lysine N-Methyltransferase; Humans; Lysine; Methylation; Molecular Sequence Data; Protein Stability; Transcription, Genetic; Tumor Suppressor Protein p53

2011
Toxoplasma gondii sequesters centromeres to a specific nuclear region throughout the cell cycle.
    Proceedings of the National Academy of Sciences of the United States of America, 2011, Mar-01, Volume: 108, Issue:9

    Topics: Cell Cycle; Centromere; Chromatin Immunoprecipitation; Chromosome Breakage; Etoposide; Fluorescent Antibody Technique; Histones; Humans; Lysine; Methylation; Mitosis; Oligonucleotide Array Sequence Analysis; Reproducibility of Results; Toxoplasma

2011
Symmetrical modification within a nucleosome is not required globally for histone lysine methylation.
    EMBO reports, 2011, Volume: 12, Issue:3

    Topics: Cell Line; HeLa Cells; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Mass Spectrometry; Methylation; Nucleosomes; Protein Processing, Post-Translational

2011
Association between mitochondrial DNA haplotype compatibility and increased efficiency of bovine intersubspecies cloning.
    Journal of genetics and genomics = Yi chuan xue bao, 2011, Volume: 38, Issue:1

    Topics: Adenosine Triphosphate; Animals; Blastocyst; Cattle; Cloning, Organism; Dairying; DNA, Mitochondrial; Embryo Implantation; Female; Haplotypes; Histones; Lysine; Methylation; Nuclear Transfer Techniques; Promoter Regions, Genetic

2011
Characterization of the contradictory chromatin signatures at the 3' exons of zinc finger genes.
    PloS one, 2011, Feb-15, Volume: 6, Issue:2

    Topics: Chromatin; Exons; HEK293 Cells; Histones; Humans; Lysine; Methylation; Zinc Fingers

2011
Histone H3 lysine 9 trimethylation and HP1γ favor inclusion of alternative exons.
    Nature structural & molecular biology, 2011, Volume: 18, Issue:3

    Topics: Alternative Splicing; Cell Line; Chromosomal Proteins, Non-Histone; Exons; HeLa Cells; Histones; Humans; Hyaluronan Receptors; Lysine; Methylation; RNA Polymerase II; RNA Precursors

2011
Deacetylation and methylation at histone H3 lysine 9 (H3K9) coordinate chromosome condensation during cell cycle progression.
    Molecules and cells, 2011, Volume: 31, Issue:4

    Topics: Acetylation; Cell Cycle; Cell Line, Tumor; Chromatin; Chromosomes, Human; Histones; Humans; Hydroxymethyl and Formyl Transferases; Lysine; Methylation; Nocodazole; Nucleic Acid Conformation; Protein Processing, Post-Translational

2011
Controlling transcriptional programs for cellular adaptation by chromatin regulation.
    Molecular bioSystems, 2011, Volume: 7, Issue:5

    Topics: Acetylation; Adaptation, Physiological; Chromatin; Fungal Proteins; Gene Expression Profiling; Gene Expression Regulation, Developmental; Gene Expression Regulation, Fungal; Histones; Lysine; Methylation; Models, Genetic; Nucleosomes; Promoter Regions, Genetic; Protein Processing, Post-Translational; Stress, Physiological; Transcription, Genetic; Yeasts

2011
Small-molecule ligands of methyl-lysine binding proteins.
    Journal of medicinal chemistry, 2011, Apr-14, Volume: 54, Issue:7

    Topics: Binding Sites; Calorimetry; Drug Discovery; High-Throughput Screening Assays; Humans; Ligands; Luminescent Measurements; Lysine; Methylation; Models, Molecular; Nuclear Proteins; Peptidomimetics; Protein Structure, Tertiary; Small Molecule Libraries

2011
The ATRX-ADD domain binds to H3 tail peptides and reads the combined methylation state of K4 and K9.
    Human molecular genetics, 2011, Jun-01, Volume: 20, Issue:11

    Topics: 3T3 Cells; alpha-Thalassemia; Amino Acid Sequence; Animals; Chromatin; Cloning, Molecular; DNA Helicases; Gene Expression; HEK293 Cells; Histones; Humans; Lysine; Mental Retardation, X-Linked; Methylation; Mice; Molecular Sequence Data; Mutagenesis, Site-Directed; Mutation; Nuclear Proteins; Peptides; Protein Binding; Protein Interaction Domains and Motifs; Protein Structure, Quaternary; X-linked Nuclear Protein

2011
A long noncoding RNA maintains active chromatin to coordinate homeotic gene expression.
    Nature, 2011, Apr-07, Volume: 472, Issue:7341

    Topics: Animals; Cell Line; Cells, Cultured; Chromatin; DNA, Intergenic; Embryo, Mammalian; Fibroblasts; Gene Expression Regulation, Developmental; Gene Knockdown Techniques; Genes, Homeobox; Histone-Lysine N-Methyltransferase; Histones; Humans; Intracellular Signaling Peptides and Proteins; Lysine; Methylation; Mice; Molecular Sequence Data; Multigene Family; Organ Specificity; RNA, Untranslated; Transcription, Genetic

2011
Biophysical probes reveal a "compromise" nature of the methyl-lysine binding pocket in L3MBTL1.
    Journal of the American Chemical Society, 2011, Apr-13, Volume: 133, Issue:14

    Topics: Binding Sites; Biomimetic Materials; Histones; Lysine; Methylation; Molecular Dynamics Simulation; Molecular Probes; Nuclear Proteins; Protein Conformation; Protein Structure, Tertiary; Thermodynamics

2011
Identification of cis regulatory features in the embryonic zebrafish genome through large-scale profiling of H3K4me1 and H3K4me3 binding sites.
    Developmental biology, 2011, Sep-15, Volume: 357, Issue:2

    Topics: Animals; Binding Sites; Conserved Sequence; DNA, Intergenic; Embryo, Nonmammalian; Enhancer Elements, Genetic; Gene Expression Profiling; Gene Expression Regulation, Developmental; Genome; Histones; Lysine; Methylation; Protein Binding; Regulatory Sequences, Nucleic Acid; Transcription Initiation Site; Zebrafish; Zebrafish Proteins

2011
Identification of a role for histone H2B ubiquitylation in noncoding RNA 3'-end formation through mutational analysis of Rtf1 in Saccharomyces cerevisiae.
    Genetics, 2011, Volume: 188, Issue:2

    Topics: Amino Acid Sequence; Blotting, Northern; Blotting, Western; Gene Expression Regulation, Fungal; Histones; Humans; Lysine; Methylation; Molecular Sequence Data; Mutation; RNA, Small Nucleolar; RNA, Untranslated; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins; Sequence Homology, Amino Acid; TATA-Box Binding Protein; Ubiquitination

2011
Differential contributions of histone H3 and H4 residues to heterochromatin structure.
    Genetics, 2011, Volume: 188, Issue:2

    Topics: Acetylation; Amino Acid Sequence; Amino Acids; Arginine; Chromatin; DNA, Fungal; Gene Expression Regulation, Fungal; Heterochromatin; Histones; Lysine; Methylation; Molecular Sequence Data; Mutation; Nucleosomes; Phosphorylation; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins; Serine; Transcription, Genetic

2011
The role of cotranscriptional histone methylations.
    Cold Spring Harbor symposia on quantitative biology, 2010, Volume: 75

    Topics: Histone-Lysine N-Methyltransferase; Histones; Lysine; Methylation; Models, Biological; Promoter Regions, Genetic; Saccharomyces cerevisiae; Signal Transduction; Transcription, Genetic

2010
Nfat1 regulates adult articular chondrocyte function through its age-dependent expression mediated by epigenetic histone methylation.
    Journal of bone and mineral research : the official journal of the American Society for Bone and Mineral Research, 2011, Volume: 26, Issue:8

    Topics: Aging; Animals; Base Sequence; Cartilage, Articular; Chondrocytes; Chromatin Immunoprecipitation; Epigenesis, Genetic; Gene Knockdown Techniques; Histone Demethylases; Histones; Jumonji Domain-Containing Histone Demethylases; Lysine; Methylation; Mice; Molecular Sequence Data; NFATC Transcription Factors; Osteoarthritis; Oxidoreductases, N-Demethylating; Promoter Regions, Genetic; RNA Interference; RNA, Small Interfering; Up-Regulation

2011
Genome-wide analysis reveals novel molecular features of mouse recombination hotspots.
    Nature, 2011, Apr-21, Volume: 472, Issue:7343

    Topics: Animals; Chromosome Mapping; Chromosome Segregation; Chromosomes, Mammalian; Consensus Sequence; Crossing Over, Genetic; DNA Breaks, Double-Stranded; Genetic Markers; Genome; Genomics; Histones; Lysine; Male; Meiosis; Methylation; Mice; Mice, Inbred C57BL; Molecular Sequence Data; Nucleosomes; Organ Specificity; Recombination, Genetic; Sister Chromatid Exchange; Testis; Transcription, Genetic

2011
Functional nuclear organization of transcription and DNA replication: a topographical marriage between chromatin domains and the interchromatin compartment.
    Cold Spring Harbor symposia on quantitative biology, 2010, Volume: 75

    Topics: Animals; Cell Compartmentation; Chromatin; DNA; DNA Replication; Fibroblasts; HeLa Cells; Histones; Humans; Lysine; Methylation; Microscopy; Nuclear Matrix; Protein Processing, Post-Translational; RNA; RNA Polymerase II; RNA Splicing; Transcription, Genetic

2010
H3 lysine 4 is acetylated at active gene promoters and is regulated by H3 lysine 4 methylation.
    PLoS genetics, 2011, Volume: 7, Issue:3

    Topics: Acetylation; Euchromatin; Gene Expression Regulation, Enzymologic; Gene Regulatory Networks; Heterochromatin; Histone Acetyltransferases; Histone-Lysine N-Methyltransferase; Histones; Lysine; Methylation; Promoter Regions, Genetic; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins; Silent Information Regulator Proteins, Saccharomyces cerevisiae; Sirtuin 2

2011
Structural basis of SETD6-mediated regulation of the NF-kB network via methyl-lysine signaling.
    Nucleic acids research, 2011, Volume: 39, Issue:15

    Topics: Amino Acid Sequence; Ankyrin Repeat; Cell Line; Gene Expression Regulation; Histone-Lysine N-Methyltransferase; Humans; Lysine; Methylation; Models, Molecular; Molecular Sequence Data; NF-kappa B; Protein Methyltransferases; Signal Transduction; Structural Homology, Protein; Transcription Factor RelA

2011
Caenorhabditis elegans chromatin-associated proteins SET-2 and ASH-2 are differentially required for histone H3 Lys 4 methylation in embryos and adult germ cells.
    Proceedings of the National Academy of Sciences of the United States of America, 2011, May-17, Volume: 108, Issue:20

    Topics: Animals; Caenorhabditis elegans; Caenorhabditis elegans Proteins; Embryo, Nonmammalian; Germ Cells; Histone-Lysine N-Methyltransferase; Histones; Lysine; Methylation; Nuclear Proteins; Saccharomyces cerevisiae Proteins

2011
Evolution from XIST-independent to XIST-controlled X-chromosome inactivation: epigenetic modifications in distantly related mammals.
    PloS one, 2011, Apr-25, Volume: 6, Issue:4

    Topics: Animals; Epigenesis, Genetic; Evolution, Molecular; Female; Fluorescent Antibody Technique; Heterochromatin; Histones; Humans; Lysine; Male; Mammals; Marsupialia; Methylation; Mice; Models, Genetic; Phylogeny; RNA, Long Noncoding; RNA, Untranslated; Transcription, Genetic; X Chromosome; X Chromosome Inactivation

2011
Prediction and analysis of protein methylarginine and methyllysine based on Multisequence features.
    Biopolymers, 2011, Volume: 95, Issue:11

    Topics: Arginine; Lysine; Methylation; Models, Biological

2011
Inhibition of histone lysine methylation enhances cancer-testis antigen expression in lung cancer cells: implications for adoptive immunotherapy of cancer.
    Cancer research, 2011, Jun-15, Volume: 71, Issue:12

    Topics: Antigens, Neoplasm; Cell Line, Tumor; Chromatin; DNA Methylation; Enzyme Inhibitors; Gene Expression Profiling; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Histones; Humans; Immunotherapy, Adoptive; Lung Neoplasms; Lysine; Melanoma-Specific Antigens; Membrane Proteins; Methylation; Neoplasm Proteins

2011
Histone methylation by PRC2 is inhibited by active chromatin marks.
    Molecular cell, 2011, May-06, Volume: 42, Issue:3

    Topics: Amino Acid Sequence; Animals; Blotting, Western; Cell Line; Chromatin; Crystallography, X-Ray; Drosophila; Drosophila Proteins; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation; Mice; Models, Molecular; Molecular Sequence Data; Mutation; Polycomb Repressive Complex 2; Polycomb-Group Proteins; Protein Binding; Protein Structure, Tertiary; Repressor Proteins; Retinoblastoma-Binding Protein 4; Transcription, Genetic

2011
Genome-wide remodeling of the epigenetic landscape during myogenic differentiation.
    Proceedings of the National Academy of Sciences of the United States of America, 2011, May-31, Volume: 108, Issue:22

    Topics: Animals; Cell Differentiation; Chromatin; Embryonic Stem Cells; Epigenesis, Genetic; Genome-Wide Association Study; Histones; Humans; Lysine; Methylation; Mice; Muscle Development; Muscles; Phenotype; Polycomb-Group Proteins; Repressor Proteins; Transcription, Genetic

2011
A modulated empirical Bayes model for identifying topological and temporal estrogen receptor α regulatory networks in breast cancer.
    BMC systems biology, 2011, May-09, Volume: 5

    Topics: Bayes Theorem; Breast Neoplasms; Cell Line, Tumor; Drug Resistance, Neoplasm; Epigenesis, Genetic; Estrogen Receptor alpha; Gene Regulatory Networks; Genomics; Histones; Humans; Lysine; Methylation; Models, Genetic; Reproducibility of Results; RNA Polymerase II; Tamoxifen; Time Factors

2011
Tracking epigenetic histone modifications in single cells using Fab-based live endogenous modification labeling.
    Nucleic acids research, 2011, Volume: 39, Issue:15

    Topics: Acetylation; Animals; Antibodies, Monoclonal; Blastocyst; Cells, Cultured; Chromosomes, Human, X; Epigenesis, Genetic; Female; Fluorescence Recovery After Photobleaching; Fluorescent Dyes; Histone Deacetylase Inhibitors; Histones; Humans; Hydroxamic Acids; Immunoglobulin Fab Fragments; Lysine; Male; Methylation; Mice; Microscopy, Confocal; Protein Processing, Post-Translational; Single-Cell Analysis

2011
Differentiation-independent fluctuation of pluripotency-related transcription factors and other epigenetic markers in embryonic stem cell colonies.
    Stem cells and development, 2012, Mar-20, Volume: 21, Issue:5

    Topics: Animals; Blotting, Western; Cell Differentiation; Cell Nucleus; Cells, Cultured; Embryonic Stem Cells; Epigenesis, Genetic; Fluorescence Recovery After Photobleaching; G2 Phase; Green Fluorescent Proteins; Histones; Homeodomain Proteins; Ki-67 Antigen; Lysine; Methylation; Mice; Microscopy, Confocal; Nanog Homeobox Protein; Octamer Transcription Factor-3; Pluripotent Stem Cells; Proto-Oncogene Proteins c-myc; Stem Cell Niche

2012
Modeling a new water channel that allows SET9 to dimethylate p53.
    PloS one, 2011, Volume: 6, Issue:5

    Topics: Catalysis; Crystallography, X-Ray; Histone-Lysine N-Methyltransferase; Humans; Lysine; Methylation; Models, Molecular; Molecular Dynamics Simulation; Protein Binding; Protein Conformation; S-Adenosylhomocysteine; S-Adenosylmethionine; Substrate Specificity; Tumor Suppressor Protein p53; Water

2011
Investigating the cationic side chains of the antimicrobial peptide tritrpticin: hydrogen bonding properties govern its membrane-disruptive activities.
    Biochimica et biophysica acta, 2011, Volume: 1808, Issue:9

    Topics: Anti-Bacterial Agents; Antimicrobial Cationic Peptides; Arginine; Bacillus subtilis; Cations; Erythrocytes; Escherichia coli; Guanidine; Hemolysis; Humans; Hydrogen Bonding; Lysine; Membranes; Methylation; Oligopeptides; Peptides; Spectrometry, Fluorescence; Staphylococcus aureus

2011
Loss of H3K4 methylation destabilizes gene expression patterns and physiological functions in adult murine cardiomyocytes.
    The Journal of clinical investigation, 2011, Volume: 121, Issue:7

    Topics: Animals; Calcium; Carrier Proteins; DNA-Binding Proteins; Epigenesis, Genetic; Gene Expression; Histones; Humans; Kv Channel-Interacting Proteins; Lysine; Methylation; Mice; Mice, Knockout; Myocytes, Cardiac; Nuclear Proteins; Ventricular Premature Complexes

2011
ChIP-seq analysis reveals distinct H3K27me3 profiles that correlate with transcriptional activity.
    Nucleic acids research, 2011, Sep-01, Volume: 39, Issue:17

    Topics: Animals; Cells, Cultured; Chromatin Immunoprecipitation; Cluster Analysis; Histones; Lysine; Methylation; Mice; Mice, Inbred C57BL; Promoter Regions, Genetic; Sequence Analysis, DNA; Transcription Initiation Site; Transcription, Genetic

2011
The requirement for pre-TCR during thymic differentiation enforces a developmental pause that is essential for V-DJβ rearrangement.
    PloS one, 2011, Volume: 6, Issue:6

    Topics: Animals; B7-2 Antigen; CD28 Antigens; Cell Differentiation; DNA-Binding Proteins; Gene Expression Regulation; Gene Rearrangement, alpha-Chain T-Cell Antigen Receptor; Gene Rearrangement, beta-Chain T-Cell Antigen Receptor; Histones; Lysine; Membrane Glycoproteins; Methylation; Mice; Mice, Transgenic; Receptors, Antigen, T-Cell, alpha-beta; T-Lymphocytes; Thymus Gland; Transcription, Genetic

2011
The RNA helicase Rm62 cooperates with SU(VAR)3-9 to re-silence active transcription in Drosophila melanogaster.
    PloS one, 2011, Volume: 6, Issue:6

    Topics: Animals; Drosophila melanogaster; Histones; HSP70 Heat-Shock Proteins; Lysine; Methylation; Methyltransferases; Protein Binding; RNA Helicases; RNA Interference; Transcription, Genetic

2011
Histone H2B ubiquitylation and H3 lysine 4 methylation prevent ectopic silencing of euchromatic loci important for the cellular response to heat.
    Molecular biology of the cell, 2011, Aug-01, Volume: 22, Issue:15

    Topics: Cell Wall; Euchromatin; Gene Expression Regulation, Fungal; Gene Silencing; Genetic Loci; Genome, Fungal; Heterochromatin; Histones; Hot Temperature; Lysine; Methylation; Plasmids; Protein Processing, Post-Translational; RNA, Messenger; Saccharomyces cerevisiae; Sequence Analysis, DNA; Silent Information Regulator Proteins, Saccharomyces cerevisiae; Site-Specific DNA-Methyltransferase (Adenine-Specific); Transcription, Genetic; Transfection; Ubiquitination

2011
Role of yeast JmjC-domain containing histone demethylases in actively transcribed regions.
    Biochemical and biophysical research communications, 2011, Jul-08, Volume: 410, Issue:3

    Topics: Chromatin Immunoprecipitation; Gene Expression Regulation, Fungal; Histone Demethylases; Histones; Jumonji Domain-Containing Histone Demethylases; Lysine; Methylation; Repressor Proteins; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins; Transcription, Genetic

2011
Drosophila Set1 is the major histone H3 lysine 4 trimethyltransferase with role in transcription.
    The EMBO journal, 2011, Jun-21, Volume: 30, Issue:14

    Topics: Animals; Blotting, Western; Chromatin Assembly and Disassembly; Chromatin Immunoprecipitation; Drosophila melanogaster; Drosophila Proteins; Gene Expression Regulation; Heat-Shock Proteins; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Histones; Immunoprecipitation; Lysine; Methylation; Promoter Regions, Genetic; Reverse Transcriptase Polymerase Chain Reaction; RNA Polymerase II; RNA, Messenger; Transcription, Genetic

2011
H3K4 trimethylation by Set1 promotes efficient termination by the Nrd1-Nab3-Sen1 pathway.
    Molecular and cellular biology, 2011, Volume: 31, Issue:17

    Topics: Acetylation; Blotting, Northern; Chromatin Immunoprecipitation; DNA Helicases; Histone Deacetylases; Histone-Lysine N-Methyltransferase; Histones; Lysine; Methylation; Mutation; Nuclear Proteins; Plasmids; Protein Binding; Reverse Transcriptase Polymerase Chain Reaction; RNA Helicases; RNA Polymerase II; RNA-Binding Proteins; RNA, Small Nucleolar; Saccharomyces cerevisiae Proteins; Signal Transduction; Transcription, Genetic

2011
Structural and histone binding ability characterizations of human PWWP domains.
    PloS one, 2011, Volume: 6, Issue:6

    Topics: Amino Acid Sequence; Crystallography, X-Ray; Histones; Humans; Lysine; Magnetic Resonance Spectroscopy; Methylation; Models, Molecular; Molecular Sequence Data; Mutation; Peptides; Protein Binding; Protein Structure, Tertiary; Proteins; Sequence Alignment; Structural Homology, Protein; Titrimetry

2011
Coordination of DNA replication and histone modification by the Rik1-Dos2 complex.
    Nature, 2011, Jul-03, Volume: 475, Issue:7355

    Topics: Cdc20 Proteins; Cell Cycle; Cell Cycle Proteins; Chromosomal Proteins, Non-Histone; Chromosomes, Fungal; DNA Replication; Epigenesis, Genetic; Gene Expression Regulation, Fungal; Gene Silencing; Heterochromatin; Histones; Lysine; Methylation; Multiprotein Complexes; RNA Interference; RNA Polymerase II; RNA, Small Interfering; Schizosaccharomyces; Schizosaccharomyces pombe Proteins; Transcription Factors; Transcription, Genetic

2011
The von Hippel-Lindau tumor suppressor protein regulates gene expression and tumor growth through histone demethylase JARID1C.
    Oncogene, 2012, Feb-09, Volume: 31, Issue:6

    Topics: Animals; Basic Helix-Loop-Helix Transcription Factors; Blotting, Western; Carcinoma, Renal Cell; Cell Line, Tumor; Cell Proliferation; Collagen Type VI; Gene Expression Regulation, Neoplastic; HEK293 Cells; Histone Demethylases; Histones; Humans; Hypoxia-Inducible Factor 1, alpha Subunit; Insulin-Like Growth Factor Binding Protein 3; Kidney Neoplasms; Lysine; Methylation; Mice; Mice, Nude; Mutation; Oxidoreductases, N-Demethylating; Reverse Transcriptase Polymerase Chain Reaction; RNA Interference; Transplantation, Heterologous; Tumor Burden; Von Hippel-Lindau Tumor Suppressor Protein

2012
H3K27me3 protein is a promising predictive biomarker of patients' survival and chemoradioresistance in human nasopharyngeal carcinoma.
    Molecular medicine (Cambridge, Mass.), 2011, Volume: 17, Issue:11-12

    Topics: Biomarkers, Tumor; Blotting, Western; Carcinoma; Cell Line, Tumor; Drug Resistance, Neoplasm; Female; Histones; Humans; Immunohistochemistry; Lysine; Male; Methylation; Middle Aged; Models, Biological; Multivariate Analysis; Nasopharyngeal Carcinoma; Nasopharyngeal Neoplasms; Neoplasm Metastasis; Predictive Value of Tests; Prognosis; Radiation Tolerance; ROC Curve; Survival Analysis; Treatment Outcome

2011
An acetylation-mono-ubiquitination switch on lysine 120 of H2B.
    Epigenetics, 2011, Volume: 6, Issue:5

    Topics: Acetylation; Chromatin; Gene Expression Regulation; HCT116 Cells; Hep G2 Cells; Histones; Humans; Lysine; Methylation; Nucleosomes; Protein Processing, Post-Translational; Ubiquitin-Protein Ligases; Ubiquitination

2011
Chromatin and transcriptional signatures for Nodal signaling during endoderm formation in hESCs.
    Developmental biology, 2011, Sep-15, Volume: 357, Issue:2

    Topics: Chromatin; Embryonic Stem Cells; Endoderm; Forkhead Transcription Factors; Gene Expression Profiling; Gene Expression Regulation, Developmental; Genome, Human; Histones; Humans; Jumonji Domain-Containing Histone Demethylases; Lysine; Methylation; Nodal Protein; Oligonucleotide Array Sequence Analysis; Organ Specificity; Protein Binding; Reproducibility of Results; Signal Transduction; Smad Proteins; Time Factors; Transcription, Genetic

2011
Selective killing of mixed lineage leukemia cells by a potent small-molecule DOT1L inhibitor.
    Cancer cell, 2011, Jul-12, Volume: 20, Issue:1

    Topics: Animals; Cell Death; Cell Differentiation; Cell Line, Tumor; Cell Proliferation; Dose-Response Relationship, Drug; Enzyme Inhibitors; Gene Expression Profiling; Gene Expression Regulation, Leukemic; Gene Rearrangement; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Histones; Humans; Leukemia, Biphenotypic, Acute; Lysine; Methylation; Methyltransferases; Mice; Myeloid-Lymphoid Leukemia Protein; Oncogene Proteins, Fusion; Small Molecule Libraries; Xenograft Model Antitumor Assays

2011
MLL-rearranged leukemia is dependent on aberrant H3K79 methylation by DOT1L.
    Cancer cell, 2011, Jul-12, Volume: 20, Issue:1

    Topics: Animals; Apoptosis; Cell Cycle; Cell Differentiation; Cell Transformation, Neoplastic; Gene Rearrangement; Genetic Loci; Hematopoiesis; Histone-Lysine N-Methyltransferase; Histones; Homeodomain Proteins; Humans; Lysine; Methylation; Methyltransferases; Mice; Myeloid Ecotropic Viral Integration Site 1 Protein; Myeloid Progenitor Cells; Myeloid-Lymphoid Leukemia Protein; Neoplasm Proteins; Oncogene Proteins, Fusion; Protein Processing, Post-Translational

2011
SPR-5 is a histone H3K4 demethylase with a role in meiotic double-strand break repair.
    Proceedings of the National Academy of Sciences of the United States of America, 2011, Aug-02, Volume: 108, Issue:31

    Topics: Animals; Animals, Genetically Modified; Antineoplastic Agents, Phytogenic; Apoptosis; Blotting, Western; Caenorhabditis elegans; Caenorhabditis elegans Proteins; Camptothecin; DNA Breaks, Double-Stranded; DNA Repair; Gene Expression Profiling; Germ Cells; Green Fluorescent Proteins; Histones; Lysine; Meiosis; Methylation; Microscopy, Fluorescence; Mutation; Oligonucleotide Array Sequence Analysis; Oxidoreductases, N-Demethylating; Rad51 Recombinase; Reverse Transcriptase Polymerase Chain Reaction; RNA Interference

2011
Wolf-Hirschhorn syndrome candidate 1 is involved in the cellular response to DNA damage.
    Proceedings of the National Academy of Sciences of the United States of America, 2011, Aug-09, Volume: 108, Issue:32

    Topics: Cell Line, Tumor; Checkpoint Kinase 2; DNA Damage; DNA Replication; Enzyme Activation; Gene Silencing; Histone-Lysine N-Methyltransferase; Histones; Humans; Hydroxyurea; Intracellular Signaling Peptides and Proteins; Lysine; Methylation; Phosphorylation; Protein Serine-Threonine Kinases; Protein Transport; Replication Protein A; Repressor Proteins; Stress, Physiological; Tumor Suppressor p53-Binding Protein 1; Wolf-Hirschhorn Syndrome

2011
Splicing enhances recruitment of methyltransferase HYPB/Setd2 and methylation of histone H3 Lys36.
    Nature structural & molecular biology, 2011, Jul-26, Volume: 18, Issue:9

    Topics: Animals; Cell Line; Chromatin Immunoprecipitation; Epigenesis, Genetic; HeLa Cells; Histone-Lysine N-Methyltransferase; Histones; Humans; Introns; Lysine; Methylation; Mice; Models, Genetic; RNA Splicing; Sequence Analysis, RNA

2011
Histone H3 trimethylation at lysine 36 is associated with constitutive and facultative heterochromatin.
    Genome research, 2011, Volume: 21, Issue:9

    Topics: Animals; Chromosomes, Mammalian; Epigenomics; Female; Gene Expression Regulation; Gene Silencing; Heterochromatin; Histones; Lysine; Male; Methylation; Mice; Mice, Inbred C57BL; Nuclear Proteins; Transcription, Genetic

2011
Structural framework for the modulation of the activity of the hybrid antibiotic peptide cecropin A-melittin [CA(1-7)M(2-9)] by Nε-lysine trimethylation.
    Chembiochem : a European journal of chemical biology, 2011, Sep-19, Volume: 12, Issue:14

    Topics: Amino Acid Sequence; Antimicrobial Cationic Peptides; Lysine; Magnetic Resonance Spectroscopy; Methylation; Micelles; Models, Molecular; Protein Conformation; Protein Stability; Sodium Dodecyl Sulfate; Structure-Activity Relationship

2011
Histone crosstalk directed by H2B ubiquitination is required for chromatin boundary integrity.
    PLoS genetics, 2011, Volume: 7, Issue:7

    Topics: Acetylation; Amino Acid Sequence; Animals; Avian Proteins; beta-Globins; Blotting, Western; Cell Line, Tumor; Chick Embryo; Chickens; Chromatin; Folate Receptor 1; Heterochromatin; Histone Code; Histones; Insulator Elements; Lysine; Methylation; Molecular Sequence Data; Protein Binding; Regulatory Sequences, Nucleic Acid; RNA Interference; RNA Polymerase II; Sequence Homology, Amino Acid; Ubiquitin-Protein Ligases; Ubiquitination

2011
Stage-specific histone modification profiles reveal global transitions in the Xenopus embryonic epigenome.
    PloS one, 2011, Volume: 6, Issue:7

    Topics: Animals; Blastula; Blotting, Western; Cell Differentiation; Chromatography, Liquid; Embryo, Nonmammalian; Embryonic Stem Cells; Epigenomics; Gene Expression Profiling; Histones; Lysine; Methylation; Mice; Mice, Inbred ICR; Protein Processing, Post-Translational; Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization; Xenopus laevis

2011
Genome-wide epigenetic analysis of human pluripotent stem cells by ChIP and ChIP-Seq.
    Methods in molecular biology (Clifton, N.J.), 2011, Volume: 767

    Topics: Animals; Chromatin; Chromatin Immunoprecipitation; DNA; Epigenesis, Genetic; Gene Library; Genome, Human; Histones; Humans; Lysine; Methylation; Mice; Organic Chemicals; Pluripotent Stem Cells; Polymerase Chain Reaction; Proteins; Sequence Analysis, DNA

2011
Fasting of 3-day-old chicks leads to changes in histone H3 methylation status.
    Physiology & behavior, 2012, Jan-18, Volume: 105, Issue:2

    Topics: Animals; Animals, Newborn; Chickens; Corticotropin-Releasing Hormone; Fasting; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Histones; Hypothalamus; Iodide Peroxidase; Iodothyronine Deiodinase Type II; Lysine; Male; Methylation; RNA, Messenger; Thyrotropin-Releasing Hormone

2012
Regulation of p53 function by lysine methylation.
    Epigenomics, 2011, Volume: 3, Issue:3

    Topics: Epigenesis, Genetic; Histocompatibility Antigens; Histone Demethylases; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation; Models, Biological; Signal Transduction; Tumor Suppressor Protein p53

2011
Pairing of lacO tandem repeats in Arabidopsis thaliana nuclei requires the presence of hypermethylated, large arrays at two chromosomal positions, but does not depend on H3-lysine-9-dimethylation.
    Chromosoma, 2011, Volume: 120, Issue:6

    Topics: Arabidopsis; Cell Nucleus; Chromosome Pairing; Chromosomes, Plant; DNA Methylation; Heterochromatin; Histones; Lysine; Methylation; Plant Proteins; Tandem Repeat Sequences

2011
Recent transcription-induced histone H3 lysine 4 (H3K4) methylation inhibits gene reactivation.
    The Journal of biological chemistry, 2011, Oct-07, Volume: 286, Issue:40

    Topics: Adenosine Triphosphatases; Epigenesis, Genetic; Fungal Proteins; Galactokinase; Galactose; Gene Deletion; Gene Expression Regulation, Fungal; Histones; Kinetics; Lysine; Methylation; RNA Polymerase II; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins; Transcription, Genetic

2011
The Y641C mutation of EZH2 alters substrate specificity for histone H3 lysine 27 methylation states.
    FEBS letters, 2011, Oct-03, Volume: 585, Issue:19

    Topics: Animals; Base Sequence; Cell Line; Cysteine; DNA-Binding Proteins; Enhancer of Zeste Homolog 2 Protein; Histones; Humans; Lysine; Methylation; Molecular Sequence Data; Mutation; Polycomb Repressive Complex 2; Sequence Analysis, DNA; Substrate Specificity; Transcription Factors

2011
High-throughput TR-FRET assays for identifying inhibitors of LSD1 and JMJD2C histone lysine demethylases.
    Journal of biomolecular screening, 2012, Volume: 17, Issue:1

    Topics: Amino Acid Sequence; Enzyme Inhibitors; Fluorescence Resonance Energy Transfer; High-Throughput Screening Assays; Histone Demethylases; Immunoassay; Jumonji Domain-Containing Histone Demethylases; Lysine; Methylation; Molecular Sequence Data; Peptides

2012
Effects of novel C-methylated spermidine analogs on cell growth via hypusination of eukaryotic translation initiation factor 5A.
    Amino acids, 2012, Volume: 42, Issue:2-3

    Topics: Blotting, Western; Cell Division; Cell Line, Tumor; Eukaryotic Translation Initiation Factor 5A; Humans; Lysine; Male; Methylation; Peptide Initiation Factors; RNA-Binding Proteins; Spermidine

2012
Coordinated methyl-lysine erasure: structural and functional linkage of a Jumonji demethylase domain and a reader domain.
    Current opinion in structural biology, 2011, Volume: 21, Issue:6

    Topics: 5-Methylcytosine; Cytosine; DNA; Histone Demethylases; Jumonji Domain-Containing Histone Demethylases; Lysine; Methylation; Structure-Activity Relationship

2011
MAGE I transcription factors regulate KAP1 and KRAB domain zinc finger transcription factor mediated gene repression.
    PloS one, 2011, Volume: 6, Issue:8

    Topics: Antigens, Neoplasm; Binding Sites; DNA-Binding Proteins; Gene Expression Regulation; Genes, Reporter; HEK293 Cells; Histones; Humans; Inhibitor of Differentiation Protein 1; Lysine; Methylation; Models, Biological; Mutant Proteins; Neoplasm Proteins; Protein Binding; Protein Structure, Tertiary; Repressor Proteins; Reproducibility of Results; Transcription Factors; Tripartite Motif-Containing Protein 28; Ubiquitination; Zinc Fingers

2011
Structure of human SMYD2 protein reveals the basis of p53 tumor suppressor methylation.
    The Journal of biological chemistry, 2011, Nov-04, Volume: 286, Issue:44

    Topics: Calorimetry; Cell Line, Tumor; Crystallography, X-Ray; Genes, Tumor Suppressor; Histone-Lysine N-Methyltransferase; Histones; Humans; Kinetics; Lysine; Methylation; Molecular Conformation; Neoplasms; Protein Binding; Transcription, Genetic; Tumor Suppressor Protein p53

2011
Identification of protein methylation sites by coupling improved ant colony optimization algorithm and support vector machine.
    Analytica chimica acta, 2011, Oct-10, Volume: 703, Issue:2

    Topics: Algorithms; Arginine; Databases, Protein; Lysine; Methylation; Proteins; Support Vector Machine

2011
Histone modifications and expression of DAM6 gene in peach are modulated during bud dormancy release in a cultivar-dependent manner.
    The New phytologist, 2012, Volume: 193, Issue:1

    Topics: Abscisic Acid; Acetylation; Chromatin Immunoprecipitation; Ecotype; Expressed Sequence Tags; Flowers; Gene Expression Regulation, Plant; Genes, Plant; Histones; Lysine; Methylation; Models, Biological; Oligonucleotide Array Sequence Analysis; Plant Proteins; Principal Component Analysis; Protein Processing, Post-Translational; Prunus; Real-Time Polymerase Chain Reaction; Reproducibility of Results

2012
The centromeric heterochromatin of Costus spiralis: poorly methylated and transiently acetylated during meiosis.
    Cytogenetic and genome research, 2011, Volume: 135, Issue:2

    Topics: 5-Methylcytosine; Acetylation; Centromere; Chromatin; Chromosomes, Plant; Costus; Euchromatin; Fluorescent Dyes; Heterochromatin; Histones; Immunohistochemistry; Indoles; Lysine; Methylation; Pachytene Stage; Serine

2011
Structural cooperativity in histone H3 tail modifications.
    Protein science : a publication of the Protein Society, 2011, Volume: 20, Issue:12

    Topics: Acetylation; Animals; Histones; Humans; Lysine; Methylation; Models, Molecular; Protein Processing, Post-Translational

2011
Structure-guided design of a methyl donor cofactor that controls a viral histone H3 lysine 27 methyltransferase activity.
    Journal of medicinal chemistry, 2011, Nov-10, Volume: 54, Issue:21

    Topics: Chlorella; Coenzymes; Histone-Lysine N-Methyltransferase; Histones; Lysine; Methylation; Models, Molecular; Mutation; Paramecium; Protein Conformation; S-Adenosylhomocysteine; Stereoisomerism; Structure-Activity Relationship; Viral Proteins

2011
Facile synthesis and altered ionization efficiency of diverse Nε-alkyllysine-containing peptides.
    Chemical communications (Cambridge, England), 2012, Feb-01, Volume: 48, Issue:10

    Topics: Lysine; Methylation; Molecular Structure; Peptides

2012
Nucleolar protein Spindlin1 recognizes H3K4 methylation and stimulates the expression of rRNA genes.
    EMBO reports, 2011, Oct-28, Volume: 12, Issue:11

    Topics: Animals; Cell Cycle Proteins; Fibroblasts; Gene Expression Regulation; Genetic Loci; HeLa Cells; Histones; Humans; Lysine; Methylation; Mice; Microtubule-Associated Proteins; Multiprotein Complexes; Nuclear Proteins; Nucleophosmin; Phosphoproteins; Protein Binding; Protein Subunits; Protein Transport; Repetitive Sequences, Nucleic Acid; RNA, Ribosomal

2011
Jumonji/ARID1 B (JARID1B) protein promotes breast tumor cell cycle progression through epigenetic repression of microRNA let-7e.
    The Journal of biological chemistry, 2011, Nov-25, Volume: 286, Issue:47

    Topics: Breast Neoplasms; Cell Cycle; Cell Line, Tumor; Cyclin D1; Epigenesis, Genetic; Female; Gene Silencing; Histones; Humans; Jumonji Domain-Containing Histone Demethylases; Lysine; Methylation; MicroRNAs; Nuclear Proteins; Repressor Proteins

2011
Quantitative assessment of protein interaction with methyl-lysine analogues by hybrid computational and experimental approaches.
    ACS chemical biology, 2012, Jan-20, Volume: 7, Issue:1

    Topics: Binding Sites; Computer Simulation; Cysteine; Escherichia coli; Ligands; Lysine; Methylation; Models, Molecular; Molecular Mimicry; Peptides; Protein Binding; Protein Structure, Tertiary; Recombinant Proteins; Thermodynamics

2012
Regulation of DCC localization by HTZ-1/H2A.Z and DPY-30 does not correlate with H3K4 methylation levels.
    PloS one, 2011, Volume: 6, Issue:10

    Topics: Animals; Caenorhabditis elegans; Caenorhabditis elegans Proteins; Chromatin; Dosage Compensation, Genetic; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Histones; Lysine; Male; Methylation; Nuclear Proteins; X Chromosome

2011
Corepressor protein CDYL functions as a molecular bridge between polycomb repressor complex 2 and repressive chromatin mark trimethylated histone lysine 27.
    The Journal of biological chemistry, 2011, Dec-09, Volume: 286, Issue:49

    Topics: Animals; Catalytic Domain; Cell Line, Tumor; Chromatin; Co-Repressor Proteins; Epigenesis, Genetic; Gene Expression Regulation; Histones; Humans; Hydro-Lyases; Lysine; Methylation; Methyltransferases; Nucleosomes; Polycomb-Group Proteins; Proteins; Repressor Proteins; Xenopus

2011
The ability of MLL to bind RUNX1 and methylate H3K4 at PU.1 regulatory regions is impaired by MDS/AML-associated RUNX1/AML1 mutations.
    Blood, 2011, Dec-15, Volume: 118, Issue:25

    Topics: Acute Disease; Blotting, Western; Cell Line; Cell Line, Tumor; Chromatin Immunoprecipitation; Core Binding Factor Alpha 2 Subunit; Core Binding Factor beta Subunit; Gene Expression; HEK293 Cells; Histone-Lysine N-Methyltransferase; Histones; Humans; Leukemia, Myeloid; Lysine; Methylation; Mutation; Myelodysplastic Syndromes; Myeloid-Lymphoid Leukemia Protein; Protein Binding; Proto-Oncogene Proteins; Regulatory Sequences, Nucleic Acid; Reverse Transcriptase Polymerase Chain Reaction; Trans-Activators

2011
Structural basis for specific binding of human MPP8 chromodomain to histone H3 methylated at lysine 9.
    PloS one, 2011, Volume: 6, Issue:10

    Topics: Amino Acid Sequence; Chromosomal Proteins, Non-Histone; Crystallography, X-Ray; DNA Methyltransferase 3A; Drosophila Proteins; Histones; Humans; Lysine; Methylation; Models, Molecular; Molecular Sequence Data; Peptides; Phosphoproteins; Polycomb-Group Proteins; Protein Binding; Protein Structure, Tertiary; Repressor Proteins; Structural Homology, Protein; Structure-Activity Relationship

2011
Proteomic analyses of the SMYD family interactomes identify HSP90 as a novel target for SMYD2.
    Journal of molecular cell biology, 2011, Volume: 3, Issue:5

    Topics: HEK293 Cells; Histone Demethylases; Histone-Lysine N-Methyltransferase; HSP90 Heat-Shock Proteins; Humans; Isoenzymes; Lysine; Methylation; Models, Molecular; Multiprotein Complexes; Protein Conformation; Protein Interaction Maps; Proteome

2011
Tumor suppressor protein p53 recruits human Sin3B/HDAC1 complex for down-regulation of its target promoters in response to genotoxic stress.
    PloS one, 2011, Volume: 6, Issue:10

    Topics: Animals; Cell Cycle Proteins; Cell Line, Tumor; DNA Damage; Down-Regulation; Doxorubicin; Gene Silencing; Histone Deacetylase 1; Histones; HSC70 Heat-Shock Proteins; Humans; Lysine; Methylation; Mice; Nuclear Proteins; Phosphorylation; Promoter Regions, Genetic; Protein Structure, Tertiary; Repressor Proteins; Tumor Suppressor Protein p53; zeta-Crystallins

2011
Dual modification of Alzheimer's disease PHF-tau protein by lysine methylation and ubiquitylation: a mass spectrometry approach.
    Acta neuropathologica, 2012, Volume: 123, Issue:1

    Topics: Aged; Aged, 80 and over; Alzheimer Disease; Amino Acid Sequence; Female; Humans; Lysine; Male; Methylation; Middle Aged; Molecular Sequence Data; Neurofibrillary Tangles; Phosphorylation; Protein Processing, Post-Translational; Tandem Mass Spectrometry; tau Proteins; Ubiquitination

2012
Tuning HP1α chromodomain selectivity for di- and trimethyllysine.
    Chembiochem : a European journal of chemical biology, 2011, Dec-16, Volume: 12, Issue:18

    Topics: Animals; Circular Dichroism; Drosophila; Fluorescence Polarization; Histones; Lysine; Methylation; Models, Molecular

2011
A model for mitotic inheritance of histone lysine methylation.
    EMBO reports, 2011, Dec-23, Volume: 13, Issue:1

    Topics: Cell Cycle; Cell Cycle Checkpoints; Epigenesis, Genetic; HeLa Cells; Histones; Humans; Hydroxyurea; Lysine; Methylation; Mitosis; Models, Biological

2011
A bacteria colony-based screen for optimal linker combinations in genetically encoded biosensors.
    BMC biotechnology, 2011, Nov-10, Volume: 11

    Topics: Amino Acid Sequence; Animals; Biosensing Techniques; Escherichia coli; Fluorescence Resonance Energy Transfer; Fluorescent Dyes; High-Throughput Screening Assays; Histones; Lysine; Methylation; Mice; Models, Molecular; Molecular Probe Techniques; Molecular Probes; Molecular Sequence Data; Peptide Library; Small Molecule Libraries

2011
The global histone modification pattern correlates with overall survival in metachronous liver metastasis of colorectal cancer.
    Oncology reports, 2012, Volume: 27, Issue:3

    Topics: Acetylation; Colorectal Neoplasms; Female; Histones; Humans; Immunohistochemistry; Liver Neoplasms; Lysine; Male; Methylation; Middle Aged; Neoplasms, Second Primary; Prognosis; Protein Processing, Post-Translational; Retrospective Studies; Survival Rate

2012
Recognition of enhancer element-specific histone methylation by TIP60 in transcriptional activation.
    Nature structural & molecular biology, 2011, Nov-13, Volume: 18, Issue:12

    Topics: Amino Acid Sequence; Cell Line; Chromatin Assembly and Disassembly; DNA Helicases; Enhancer Elements, Genetic; Estrogen Receptor alpha; Estrogens; Histone Acetyltransferases; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Lysine Acetyltransferase 5; Methylation; Molecular Sequence Data; Myeloid-Lymphoid Leukemia Protein; Nuclear Proteins; Protein Interaction Mapping; Sequence Alignment; Transcription Factors; Transcriptional Activation

2011
A cell-based high-throughput screening assay to measure cellular histone h3 lys27 trimethylation with a modified dissociation-enhanced lanthanide fluorescent immunoassay.
    Journal of biomolecular screening, 2012, Volume: 17, Issue:1

    Topics: Cell Line, Tumor; Cell Survival; Dose-Response Relationship, Drug; Enzyme Inhibitors; Fluorescent Antibody Technique; High-Throughput Screening Assays; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Histones; Humans; Lanthanoid Series Elements; Lysine; Male; Methylation; Prostatic Neoplasms

2012
NSD2 links dimethylation of histone H3 at lysine 36 to oncogenic programming.
    Molecular cell, 2011, Nov-18, Volume: 44, Issue:4

    Topics: Animals; Cell Transformation, Neoplastic; Chromatin; Gene Expression Profiling; Gene Expression Regulation; Genome-Wide Association Study; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation; Mice; Mice, SCID; Multiple Myeloma; Recombinant Proteins; Repressor Proteins; Signal Transduction; Transcription, Genetic; Translocation, Genetic; Xenograft Model Antitumor Assays

2011
Nuclear RNAi maintains heritable gene silencing in Caenorhabditis elegans.
    Proceedings of the National Academy of Sciences of the United States of America, 2011, Dec-06, Volume: 108, Issue:49

    Topics: Animals; Animals, Genetically Modified; Caenorhabditis elegans; Caenorhabditis elegans Proteins; Cell Nucleus; Female; Gene Expression Regulation, Developmental; Green Fluorescent Proteins; Histones; Inheritance Patterns; Lysine; Male; Methylation; Microscopy, Fluorescence; Mutation; Recombinant Fusion Proteins; Reverse Transcriptase Polymerase Chain Reaction; RNA Interference; RNA-Binding Proteins; RNA, Small Interfering

2011
Clustered ChIP-Seq-defined transcription factor binding sites and histone modifications map distinct classes of regulatory elements.
    BMC biology, 2011, Nov-24, Volume: 9

    Topics: Binding Sites; Cell Line; Chromatin; Chromatin Immunoprecipitation; High-Throughput Nucleotide Sequencing; Histones; Humans; Lysine; Methylation; Multigene Family; Protein Binding; Regulatory Sequences, Nucleic Acid; Transcription Factors

2011
Global mapping of H3K4me1 and H3K4me3 reveals the chromatin state-based cell type-specific gene regulation in human Treg cells.
    PloS one, 2011, Volume: 6, Issue:11

    Topics: CD4 Antigens; Cell Lineage; Cell Proliferation; Cell Separation; Chromatin; Chromatin Immunoprecipitation; Enhancer Elements, Genetic; Forkhead Transcription Factors; Gene Expression Regulation; Genome, Human; Histones; Humans; Interleukin-2 Receptor alpha Subunit; Lysine; Methylation; Organ Specificity; Promoter Regions, Genetic; Protein Processing, Post-Translational; Reproducibility of Results; Sequence Analysis, DNA; T-Lymphocytes, Regulatory

2011
H3K36 methylation is critical for brassinosteroid-regulated plant growth and development in rice.
    The Plant journal : for cell and molecular biology, 2012, Volume: 70, Issue:2

    Topics: Brassinosteroids; Chromatin Immunoprecipitation; Gene Expression Profiling; Gene Expression Regulation, Plant; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Histones; Luminescent Proteins; Lysine; Methylation; Microscopy, Confocal; Oligonucleotide Array Sequence Analysis; Oryza; Plant Growth Regulators; Plant Proteins; Protein Binding; Reverse Transcriptase Polymerase Chain Reaction; RNA Interference

2012
X-chromosome hyperactivation in mammals via nonlinear relationships between chromatin states and transcription.
    Nature structural & molecular biology, 2011, Dec-04, Volume: 19, Issue:1

    Topics: Animals; Cell Line; Chromatin; Chromosomes, Mammalian; DNA Polymerase II; Dosage Compensation, Genetic; Female; Gene Expression Profiling; Genes, X-Linked; Histones; Lysine; Male; Methylation; Mice; Mice, 129 Strain; Models, Genetic; Oligonucleotide Array Sequence Analysis; Promoter Regions, Genetic; Transcription Initiation Site; Transcription, Genetic; X Chromosome

2011
Dual function of histone H3 lysine 36 methyltransferase ASH1 in regulation of Hox gene expression.
    PloS one, 2011, Volume: 6, Issue:11

    Topics: Biocatalysis; DNA-Binding Proteins; Gene Expression Regulation, Leukemic; Gene Knockdown Techniques; HeLa Cells; Hematopoiesis; Histone-Lysine N-Methyltransferase; Histones; Homeodomain Proteins; Humans; K562 Cells; Lysine; Methylation; Myeloid-Lymphoid Leukemia Protein; Promoter Regions, Genetic; Protein Binding; Repressor Proteins; Transcription Factors

2011
Quantification of protein isoforms in mesenchymal stem cells by reductive dimethylation of lysines in intact proteins.
    Proteomics, 2012, Volume: 12, Issue:3

    Topics: Animals; Cells, Cultured; Cytoplasm; Gene Expression; Isotope Labeling; Lysine; Mass Spectrometry; Mesenchymal Stem Cells; Methylation; Mice; Nuclear Proteins; Protein Isoforms; Stromal Cells

2012
Druggability of methyl-lysine binding sites.
    Journal of computer-aided molecular design, 2011, Volume: 25, Issue:12

    Topics: Binding Sites; Drug Design; Histones; Humans; Lysine; Methylation; Models, Molecular; Protein Structure, Tertiary; Small Molecule Libraries

2011
Solution structure of the Pdp1 PWWP domain reveals its unique binding sites for methylated H4K20 and DNA.
    The Biochemical journal, 2012, Mar-15, Volume: 442, Issue:3

    Topics: Amino Acid Motifs; Amino Acid Sequence; Binding Sites; DNA; Electrophoretic Mobility Shift Assay; Histones; Lysine; Methylation; Models, Molecular; Molecular Sequence Data; Protein Conformation; Protein Structure, Tertiary; Schizosaccharomyces; Schizosaccharomyces pombe Proteins; Solutions

2012
Interaction between γ-radiation and dietary folate starvation metabolically reprograms global hepatic histone H3 methylation at lysine 4 and lysine 27 residues.
    Food and chemical toxicology : an international journal published for the British Industrial Biological Research Association, 2012, Volume: 50, Issue:3-4

    Topics: Animals; Enzyme Induction; Folic Acid; Gamma Rays; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Histones; Liver; Lysine; Male; Methylation; Mice

2012
Comparative epigenetic analysis of Oct4 regulatory region in RA-induced differentiated NT2 cells under adherent and non-adherent culture conditions.
    Molecular and cellular biochemistry, 2012, Volume: 363, Issue:1-2

    Topics: Acetylation; Carcinoma, Embryonal; Cell Adhesion; Cell Culture Techniques; Cell Differentiation; Cell Line, Tumor; Chromatin Immunoprecipitation; Down-Regulation; Epigenesis, Genetic; Gene Expression Regulation, Neoplastic; Histones; Humans; Lysine; Methylation; Octamer Transcription Factor-3; Real-Time Polymerase Chain Reaction; Regulatory Sequences, Nucleic Acid; Time Factors; Tretinoin

2012
Bioinformatic analysis and post-translational modification crosstalk prediction of lysine acetylation.
    PloS one, 2011, Volume: 6, Issue:12

    Topics: Acetylation; Animals; Cell Cycle; Computational Biology; DNA Repair; Gene Expression Regulation; Humans; Lysine; Methylation; Mice; Models, Biological; Phosphorylation; Protein Conformation; Protein Processing, Post-Translational; Protein Structure, Secondary; Protein Structure, Tertiary; Proteomics; Ubiquitin

2011
GmPHD5 acts as an important regulator for crosstalk between histone H3K4 di-methylation and H3K14 acetylation in response to salinity stress in soybean.
    BMC plant biology, 2011, Dec-15, Volume: 11

    Topics: Acetylation; Cloning, Molecular; Gene Expression Regulation, Plant; Glycine max; Histones; Homeodomain Proteins; Lysine; Methylation; Protein Processing, Post-Translational; Salinity; Soybean Proteins; Stress, Physiological

2011
Minimization of side reactions during Lys Tag derivatization of C-terminal lysine peptides.
    Analytica chimica acta, 2012, Jan-27, Volume: 712

    Topics: Chromatography, High Pressure Liquid; Databases, Protein; Hydrogen-Ion Concentration; Hydrolysis; Imidazoles; Lysine; Methylation; Nanotechnology; Peptides; Proteomics; Spectrometry, Mass, Electrospray Ionization; Tandem Mass Spectrometry; Temperature

2012
Deficiency of H3K79 histone methyltransferase Dot1-like protein (DOT1L) inhibits cell proliferation.
    The Journal of biological chemistry, 2012, Feb-17, Volume: 287, Issue:8

    Topics: Cell Line, Tumor; Cell Proliferation; Chromosomal Instability; G1 Phase Cell Cycle Checkpoints; Gene Knockdown Techniques; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation; Methyltransferases; RNA, Small Interfering

2012
Lysine methyltransferase G9a methylates the transcription factor MyoD and regulates skeletal muscle differentiation.
    Proceedings of the National Academy of Sciences of the United States of America, 2012, Jan-17, Volume: 109, Issue:3

    Topics: Amino Acid Sequence; Animals; Cell Differentiation; Cell Line; Histone-Lysine N-Methyltransferase; Humans; Lysine; Methylation; Mice; Molecular Sequence Data; Muscle Development; Muscle, Skeletal; MyoD Protein; Protein Binding

2012
Compensatory functions of histone deacetylase 1 (HDAC1) and HDAC2 regulate transcription and apoptosis during mouse oocyte development.
    Proceedings of the National Academy of Sciences of the United States of America, 2012, Feb-21, Volume: 109, Issue:8

    Topics: Acetylation; Animals; Apoptosis; DNA-Binding Proteins; Female; Gene Deletion; Gene Expression Regulation, Developmental; Gene Targeting; Histone Deacetylase 1; Histone Deacetylase 2; Histones; Hydroxamic Acids; Infertility, Female; Jumonji Domain-Containing Histone Demethylases; Lysine; Methylation; Mice; Oocytes; Oogenesis; Organ Size; Ovarian Follicle; RNA Interference; RNA, Messenger; Transcription, Genetic; Transcriptome; Tumor Suppressor Protein p53

2012
RNA polymerase II phosphorylation at serine 2 and histone H3 tri-methylation at lysine 36 are key steps for thyroid hormone receptor β gene activation by thyroid hormone in Rana catesbeiana tadpole liver.
    Biochemical and biophysical research communications, 2012, Jan-20, Volume: 417, Issue:3

    Topics: Animals; Gene Expression Regulation, Developmental; Histones; Larva; Liver; Lysine; Methylation; Rana catesbeiana; RNA Polymerase II; Serine; Thyroid Hormone Receptors beta; Transcriptional Activation; Triiodothyronine

2012
Amplification of siRNA in Caenorhabditis elegans generates a transgenerational sequence-targeted histone H3 lysine 9 methylation footprint.
    Nature genetics, 2012, Jan-08, Volume: 44, Issue:2

    Topics: Animals; Base Sequence; Caenorhabditis elegans; Caenorhabditis elegans Proteins; Chromatin; Gene Expression Profiling; Genetic Loci; Histones; Lysine; Methylation; Molecular Sequence Data; RNA, Double-Stranded; RNA, Small Interfering; Sequence Analysis, DNA

2012
Smyd2 controls cytoplasmic lysine methylation of Hsp90 and myofilament organization.
    Genes & development, 2012, Jan-15, Volume: 26, Issue:2

    Topics: Animals; Chick Embryo; Connectin; Cytoplasm; Histone-Lysine N-Methyltransferase; HSP90 Heat-Shock Proteins; Humans; Lysine; Methylation; Muscle Proteins; Muscle, Skeletal; Myocardium; Myofibrils; Protein Kinases; Recombinant Proteins; Zebrafish

2012
Amyloid fibrillation in native and chemically-modified forms of carbonic anhydrase II: role of surface hydrophobicity.
    Biochimica et biophysica acta, 2012, Volume: 1824, Issue:3

    Topics: Acetylation; Amyloid; Animals; Apoenzymes; Carbonic Anhydrase II; Cattle; Cell Survival; Circular Dichroism; Holoenzymes; Hydrogen-Ion Concentration; Hydrophobic and Hydrophilic Interactions; Kinetics; Lysine; Methylation; PC12 Cells; Protein Folding; Rats; Solutions; Static Electricity; Temperature

2012
Polycomb repressive complex 2 targets murine cytomegalovirus chromatin for modification and associates with viral replication centers.
    PloS one, 2012, Volume: 7, Issue:1

    Topics: Blotting, Western; Cell Line; Chromatin; Embryo, Mammalian; Enhancer of Zeste Homolog 2 Protein; Fibroblasts; Fluorescent Antibody Technique; Histone-Lysine N-Methyltransferase; Histones; Host-Pathogen Interactions; Lysine; Methylation; Muromegalovirus; Polycomb Repressive Complex 2; Polycomb-Group Proteins; Protein Binding; Repressor Proteins; Time Factors; Virus Replication

2012
Methylation of nuclear proteins of Novikoff hepatoma.
    Carcinogenesis, 1980, Volume: 1, Issue:2

    Topics: Animals; Cell Nucleus; Histones; Kinetics; Liver; Liver Neoplasms, Experimental; Lysine; Male; Methylation; Nuclear Proteins; Rats; Rats, Sprague-Dawley; S-Adenosylmethionine

1980
Jumonji domain-containing protein 3 regulates histone 3 lysine 27 methylation during bovine preimplantation development.
    Proceedings of the National Academy of Sciences of the United States of America, 2012, Feb-14, Volume: 109, Issue:7

    Topics: Animals; Blastocyst; Cattle; Histones; Jumonji Domain-Containing Histone Demethylases; Lysine; Methylation

2012
CpG array analysis of histone H3 lysine 4 trimethylation by chromatin immunoprecipitation linked to microarrays analysis in peripheral blood mononuclear cells of IgA nephropathy patients.
    Yonsei medical journal, 2012, Volume: 53, Issue:2

    Topics: Adult; Case-Control Studies; Chromatin Immunoprecipitation; Female; Glomerulonephritis, IGA; Histones; Humans; Leukocytes, Mononuclear; Lysine; Male; Methylation; Oligonucleotide Array Sequence Analysis; Real-Time Polymerase Chain Reaction; Young Adult

2012
Mutation of A677 in histone methyltransferase EZH2 in human B-cell lymphoma promotes hypertrimethylation of histone H3 on lysine 27 (H3K27).
    Proceedings of the National Academy of Sciences of the United States of America, 2012, Feb-21, Volume: 109, Issue:8

    Topics: Alanine; Amino Acid Sequence; Base Sequence; Binding Sites; Cell Line, Tumor; DNA Mutational Analysis; DNA-Binding Proteins; Enhancer of Zeste Homolog 2 Protein; Gene Expression Regulation, Neoplastic; Glycine; Heterozygote; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Histones; Humans; Lymphoma, B-Cell; Lysine; Methylation; Molecular Sequence Data; Mutant Proteins; Mutation; Polycomb Repressive Complex 2; Substrate Specificity; Transcription Factors

2012
Methylation of H4 lysines 5, 8 and 12 by yeast Set5 calibrates chromatin stress responses.
    Nature structural & molecular biology, 2012, Feb-19, Volume: 19, Issue:3

    Topics: Calibration; Chromatin; Histone-Lysine N-Methyltransferase; Histones; Lysine; Methylation; Saccharomyces cerevisiae; Stress, Physiological

2012
Azalysine analogues as probes for protein lysine deacetylation and demethylation.
    Journal of the American Chemical Society, 2012, Mar-21, Volume: 134, Issue:11

    Topics: Acetylation; Aza Compounds; Fluorescent Dyes; Histone Deacetylases; Histone Demethylases; Lysine; Methylation; Molecular Structure; Peptides

2012
RNF8- and RNF168-dependent degradation of KDM4A/JMJD2A triggers 53BP1 recruitment to DNA damage sites.
    The EMBO journal, 2012, Apr-18, Volume: 31, Issue:8

    Topics: Amino Acid Sequence; Cell Line; DNA; DNA Damage; DNA Repair; DNA-Binding Proteins; Histones; Humans; Intracellular Signaling Peptides and Proteins; Jumonji Domain-Containing Histone Demethylases; Lysine; Methylation; Models, Biological; Molecular Sequence Data; Protein Binding; Signal Transduction; Tumor Suppressor p53-Binding Protein 1; Ubiquitin-Protein Ligases

2012
Histone H3 lysine 56 methylation regulates DNA replication through its interaction with PCNA.
    Molecular cell, 2012, Apr-13, Volume: 46, Issue:1

    Topics: DNA Replication; G1 Phase; HEK293 Cells; HeLa Cells; Histones; Humans; Lysine; Methylation; Nucleosomes; Proliferating Cell Nuclear Antigen; Protein Processing, Post-Translational

2012
The BAH domain of ORC1 links H4K20me2 to DNA replication licensing and Meier-Gorlin syndrome.
    Nature, 2012, Mar-07, Volume: 484, Issue:7392

    Topics: Animals; Carrier Proteins; Cell Cycle; Cell Line; Chromatin; Congenital Microtia; Crystallography, X-Ray; Disease Models, Animal; DNA Replication; Dwarfism; Ear; Growth Disorders; Histones; Humans; Lysine; Methylation; Micrognathism; Models, Molecular; Origin Recognition Complex; Patella; Protein Structure, Tertiary; Replication Origin; Zebrafish; Zebrafish Proteins

2012
A short Gfi-1B isoform controls erythroid differentiation by recruiting the LSD1-CoREST complex through the dimethylation of its SNAG domain.
    Journal of cell science, 2012, Feb-15, Volume: 125, Issue:Pt 4

    Topics: Alternative Splicing; Amino Acid Motifs; Cell Line; Co-Repressor Proteins; Erythropoiesis; Erythropoietin; Gene Expression Regulation, Developmental; Histone Demethylases; Humans; Lysine; Methylation; Molecular Weight; Nerve Tissue Proteins; Promoter Regions, Genetic; Protein Binding; Protein Isoforms; Protein Structure, Tertiary; Proto-Oncogene Proteins; Repressor Proteins; Zinc Fingers

2012
Lysine methylation of FOXO3 regulates oxidative stress-induced neuronal cell death.
    EMBO reports, 2012, Volume: 13, Issue:4

    Topics: Amino Acid Sequence; Animals; Cell Death; DNA; Forkhead Box Protein O3; Forkhead Transcription Factors; Histone-Lysine N-Methyltransferase; Humans; Lysine; Methylation; Mice; Molecular Sequence Data; Neurons; Oxidative Stress; Protein Binding; Transcription, Genetic

2012
PLMLA: prediction of lysine methylation and lysine acetylation by combining multiple features.
    Molecular bioSystems, 2012, Volume: 8, Issue:5

    Topics: Acetylation; Algorithms; Amino Acid Sequence; Computational Biology; Databases, Protein; Internet; Lysine; Methylation; Models, Molecular; Molecular Sequence Data; Protein Structure, Secondary; Proteins

2012
Smyd3 regulates cancer cell phenotypes and catalyzes histone H4 lysine 5 methylation.
    Epigenetics, 2012, Volume: 7, Issue:4

    Topics: Animals; Blotting, Western; Chromatin; Enzyme Activation; Fibroblasts; Gene Expression Regulation, Neoplastic; Genetic Complementation Test; HeLa Cells; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation; Mice; Mice, Inbred C57BL; Mice, Knockout; Mutagenesis, Site-Directed; Peptide Library; Phenotype; Plasmids; Recombinant Proteins; RNA, Small Interfering; Substrate Specificity

2012
Maternal low-protein diet causes epigenetic deregulation of HMGCR and CYP7α1 in the liver of weaning piglets.
    The Journal of nutritional biochemistry, 2012, Volume: 23, Issue:12

    Topics: 3' Untranslated Regions; Animals; Body Weight; Cholesterol; Cholesterol 7-alpha-Hydroxylase; Diet, Protein-Restricted; Epigenesis, Genetic; Female; Gene Expression Regulation, Developmental; Histones; Hydroxymethylglutaryl CoA Reductases; Lactation; Liver; Lysine; Maternal Nutritional Physiological Phenomena; Methylation; MicroRNAs; Organ Size; Pregnancy; Prenatal Exposure Delayed Effects; Promoter Regions, Genetic; Receptors, LDL; Sterol Regulatory Element Binding Protein 2; Swine; Weaning

2012
Maturation-related histone modifications in the PU.1 promoter regulate Th9-cell development.
    Blood, 2012, May-17, Volume: 119, Issue:20

    Topics: Adult; CD4-Positive T-Lymphocytes; Cell Differentiation; Cells, Cultured; Epigenesis, Genetic; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Histones; Humans; Infant, Newborn; Interleukin-9; Lysine; Methylation; Promoter Regions, Genetic; Protein Processing, Post-Translational; Proto-Oncogene Proteins; T-Lymphocytes, Helper-Inducer; Trans-Activators

2012
CHD3 protein recognizes and regulates methylated histone H3 lysines 4 and 27 over a subset of targets in the rice genome.
    Proceedings of the National Academy of Sciences of the United States of America, 2012, Apr-10, Volume: 109, Issue:15

    Topics: Amino Acid Sequence; Down-Regulation; Gene Expression Regulation, Plant; Genes, Plant; Genome, Plant; Histones; Lysine; Methylation; Molecular Sequence Data; Mutation; Oryza; Phenotype; Plant Proteins; Protein Binding; Protein Structure, Tertiary; Repressor Proteins; Transcription Factors

2012
The CHD3 remodeler PICKLE associates with genes enriched for trimethylation of histone H3 lysine 27.
    Plant physiology, 2012, Volume: 159, Issue:1

    Topics: Actins; Arabidopsis; Arabidopsis Proteins; Chromatin Assembly and Disassembly; Chromatin Immunoprecipitation; DNA Helicases; Gene Expression Regulation, Developmental; Gene Expression Regulation, Plant; Genes, Plant; Genetic Loci; Germination; Histones; Lysine; Methylation; Plant Leaves; Plant Shoots; Polycomb Repressive Complex 2; Polyubiquitin; Repressor Proteins; Seeds

2012
Gene expression profile in the liver of Rana catesbeiana tadpoles exposed to low temperature in the presence of thyroid hormone.
    Biochemical and biophysical research communications, 2012, Apr-20, Volume: 420, Issue:4

    Topics: Acetylation; Animals; Body Temperature Regulation; CCAAT-Enhancer-Binding Proteins; Chromatin; Cold Temperature; Gene Expression Profiling; Histones; Larva; Liver; Lysine; Methylation; Rana catesbeiana; Thyroid Hormone Receptors beta; Transcriptional Activation; Triiodothyronine

2012
Mallory-Denk bodies form when EZH2/H3K27me3 fails to methylate DNA in the nuclei of human and mice liver cells.
    Experimental and molecular pathology, 2012, Volume: 92, Issue:3

    Topics: Animals; Blotting, Western; Carcinoma, Hepatocellular; Cell Cycle Checkpoints; Cell Nucleus; Cyclin D1; Cyclin-Dependent Kinase Inhibitor p27; DNA Methylation; DNA-Binding Proteins; Enhancer of Zeste Homolog 2 Protein; Hepatitis, Alcoholic; Hepatocytes; Histones; Humans; Immunohistochemistry; Liver; Liver Neoplasms; Lysine; Mallory Bodies; Methylation; Mice; Microscopy, Electron; Polycomb Repressive Complex 2; Proliferating Cell Nuclear Antigen; Pyridines; Reverse Transcriptase Polymerase Chain Reaction; S-Adenosylmethionine; Transcription Factors

2012
Yin Yang 1 deficiency in skeletal muscle protects against rapamycin-induced diabetic-like symptoms through activation of insulin/IGF signaling.
    Cell metabolism, 2012, Apr-04, Volume: 15, Issue:4

    Topics: Animals; Diabetes Mellitus, Experimental; Enhancer of Zeste Homolog 2 Protein; Gene Expression Regulation; Histone-Lysine N-Methyltransferase; Histones; Humans; Insulin; Insulin Resistance; Insulin-Like Growth Factor I; Lipid Metabolism; Liver; Lysine; Methylation; Mice; Mice, Knockout; Models, Biological; Muscle, Skeletal; Organ Specificity; Polycomb Repressive Complex 2; Polycomb-Group Proteins; Promoter Regions, Genetic; Protein Binding; Repressor Proteins; Signal Transduction; Sirolimus; YY1 Transcription Factor

2012
Lysyl oxidase-like 2 deaminates lysine 4 in histone H3.
    Molecular cell, 2012, 05-11, Volume: 46, Issue:3

    Topics: Amino Acid Oxidoreductases; Antigens, CD; Cadherins; Cell Line, Tumor; Deamination; Gene Expression Regulation; Histones; Humans; Lysine; Methylation

2012
Significance of calcium binding, tyrosine phosphorylation, and lysine trimethylation for the essential function of calmodulin in vertebrate cells analyzed in a novel gene replacement system.
    The Journal of biological chemistry, 2012, May-25, Volume: 287, Issue:22

    Topics: Animals; Calcium; Calmodulin; Cell Line; Chickens; Gene Deletion; Lysine; Methylation; Phosphorylation; Protein Binding; Tyrosine

2012
Transition of chromatin status during the process of recovery from drought stress in Arabidopsis thaliana.
    Plant & cell physiology, 2012, Volume: 53, Issue:5

    Topics: Acetylation; Arabidopsis; Arabidopsis Proteins; Chromatin; Chromatin Immunoprecipitation; Droughts; Gene Expression Regulation, Plant; Gene Silencing; Genes, Plant; Histones; Lysine; Methylation; Models, Biological; Nucleosomes; RNA Polymerase II; RNA, Messenger; Stress, Physiological

2012
Site-specific mapping and time-resolved monitoring of lysine methylation by high-resolution NMR spectroscopy.
    Journal of the American Chemical Society, 2012, May-09, Volume: 134, Issue:18

    Topics: Acetylation; HeLa Cells; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Magnetic Resonance Spectroscopy; Methylation; Nuclear Magnetic Resonance, Biomolecular; Protein Processing, Post-Translational

2012
Binding of the three-repeat domain of tau to phospholipid membranes induces an aggregated-like state of the protein.
    Biochimica et biophysica acta, 2012, Volume: 1818, Issue:9

    Topics: Alzheimer Disease; Amino Acid Sequence; Benzothiazoles; Biophysics; Circular Dichroism; Humans; Lipid Bilayers; Lipids; Liposomes; Lysine; Magnetic Resonance Spectroscopy; Methylation; Molecular Sequence Data; Phosphatidylcholines; Phosphatidylserines; Phospholipids; Protein Binding; Protein Conformation; Protein Structure, Secondary; Protein Structure, Tertiary; Static Electricity; tau Proteins; Thiazoles; Unilamellar Liposomes

2012
Methylation of translation-associated proteins in Saccharomyces cerevisiae: Identification of methylated lysines and their methyltransferases.
    Proteomics, 2012, Volume: 12, Issue:7

    Topics: Amino Acid Sequence; Chromatography, Affinity; Humans; Lysine; Methylation; Methyltransferases; Molecular Sequence Data; Peptide Elongation Factors; Proteome; Proteomics; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins; Sequence Alignment; Tandem Mass Spectrometry

2012
Methylation of FoxO3 regulates neuronal cell death.
    Acta pharmacologica Sinica, 2012, Volume: 33, Issue:5

    Topics: Animals; Apoptosis; Forkhead Box Protein O3; Forkhead Transcription Factors; Gene Expression Regulation; Histone-Lysine N-Methyltransferase; Lysine; Methylation; Neurons; Oxidative Stress; Protein Processing, Post-Translational; Transcription, Genetic

2012
Histone lysine methyltransferase SETD8 promotes carcinogenesis by deregulating PCNA expression.
    Cancer research, 2012, Jul-01, Volume: 72, Issue:13

    Topics: Aged; Cell Line, Tumor; Cell Transformation, Neoplastic; DNA Damage; DNA Replication; Female; Histone-Lysine N-Methyltransferase; Humans; Lysine; Male; Methylation; Middle Aged; Proliferating Cell Nuclear Antigen; Real-Time Polymerase Chain Reaction; RNA, Small Interfering

2012
Comparative expression analysis of the H3K27 demethylases, JMJD3 and UTX, with the H3K27 methylase, EZH2, in Xenopus.
    The International journal of developmental biology, 2012, Volume: 56, Issue:4

    Topics: Amino Acid Sequence; Animals; Chlorocebus aethiops; COS Cells; Embryo, Nonmammalian; Gene Expression Regulation, Developmental; Green Fluorescent Proteins; Histone-Lysine N-Methyltransferase; Histones; In Situ Hybridization; Jumonji Domain-Containing Histone Demethylases; Lysine; Methylation; Microscopy, Confocal; Molecular Sequence Data; Phylogeny; Reverse Transcriptase Polymerase Chain Reaction; Sequence Homology, Amino Acid; Xenopus; Xenopus Proteins

2012
Epigenetic reprogramming of embryos derived from sperm frozen at -20°C.
    Science China. Life sciences, 2012, Volume: 55, Issue:4

    Topics: Animals; Blastocyst; Cryopreservation; DNA Methylation; Embryo, Mammalian; Embryonic Development; Epigenesis, Genetic; Female; Fertilization in Vitro; Fluorescent Antibody Technique; Histones; Humans; Karyotyping; Lysine; Male; Methylation; Mice; Mice, Inbred C57BL; Mice, Inbred ICR; Sperm Injections, Intracytoplasmic; Spermatozoa; Time Factors

2012
The SET8 H4K20 protein lysine methyltransferase has a long recognition sequence covering seven amino acid residues.
    Biochimie, 2012, Volume: 94, Issue:11

    Topics: Amino Acid Motifs; Amino Acid Sequence; HEK293 Cells; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation; Models, Molecular; Molecular Sequence Data; Peptide Fragments; Protein Unfolding; Tumor Suppressor Protein p53

2012
Dynamic acetylation of lysine-4-trimethylated histone H3 and H3 variant biology in a simple multicellular eukaryote.
    Nucleic acids research, 2012, Volume: 40, Issue:15

    Topics: Acetylation; Amino Acid Substitution; Dictyostelium; Gene Deletion; Gene Expression; Histone-Lysine N-Methyltransferase; Histones; Hydroxamic Acids; Lysine; Methylation

2012
Histone monoubiquitylation position determines specificity and direction of enzymatic cross-talk with histone methyltransferases Dot1L and PRC2.
    The Journal of biological chemistry, 2012, Jul-06, Volume: 287, Issue:28

    Topics: Animals; Blotting, Western; Electrophoresis, Polyacrylamide Gel; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation; Methyltransferases; Models, Molecular; Mutation; Nucleosomes; Protein Binding; Protein Structure, Tertiary; Ubiquitination; Xenopus laevis

2012
PHD finger of the SUMO ligase Siz/PIAS family in rice reveals specific binding for methylated histone H3 at lysine 4 and arginine 2.
    FEBS letters, 2012, Jun-21, Volume: 586, Issue:13

    Topics: Arginine; Binding Sites; Histones; Ligases; Lysine; Methylation; Models, Molecular; Oryza; Plant Proteins; Protein Conformation; Sumoylation

2012
Cortical spreading depression differentially affects lysine methylation of H3 histone at neuroprotective genes and retrotransposon sequences.
    Brain research, 2012, Jul-27, Volume: 1467

    Topics: Animals; Cell Nucleus; Centrifugation, Density Gradient; Chloral Hydrate; Chromatin Immunoprecipitation; Cortical Spreading Depression; Histones; Hypnotics and Sedatives; Hypoxia-Inducible Factor 1; Lysine; Male; Methylation; Nitric Oxide Synthase Type II; Rats; Rats, Wistar; Real-Time Polymerase Chain Reaction; Retroelements

2012
New marks on the block: Set5 methylates H4 lysines 5, 8 and 12.
    Nucleus (Austin, Tex.), 2012, Jul-01, Volume: 3, Issue:4

    Topics: Histone-Lysine N-Methyltransferase; Histones; Lysine; Methylation; Saccharomyces cerevisiae

2012
A facile method to synthesize histones with posttranslational modification mimics.
    Biochemistry, 2012, Jul-03, Volume: 51, Issue:26

    Topics: Acetylation; Histones; Immunoprecipitation; Lysine; Methylation; Molecular Structure; Phosphorylation; Protein Processing, Post-Translational; Serine

2012
Vitrification of pig oocytes induces changes in histone H4 acetylation and histone H3 lysine 9 methylation (H3K9).
    Veterinary research communications, 2012, Volume: 36, Issue:3

    Topics: Acetylation; Animals; Chromatin; Cryopreservation; Epigenesis, Genetic; Female; Fluorescent Antibody Technique; Histones; Lysine; Methylation; Oocytes; Swine; Vitrification

2012
High levels of glucose induce "metabolic memory" in cardiomyocyte via epigenetic histone H3 lysine 9 methylation.
    Molecular biology reports, 2012, Volume: 39, Issue:9

    Topics: Cell Line; Cells, Cultured; Cytokines; Epigenesis, Genetic; Gene Expression Regulation; Glucose; Histones; Humans; Inflammation; Inflammation Mediators; Interleukin-6; Lysine; Methylation; Myocytes, Cardiac; Promoter Regions, Genetic

2012
Global levels of H3K27me3 track with differentiation in vivo and are deregulated by MYC in prostate cancer.
    The American journal of pathology, 2012, Volume: 181, Issue:2

    Topics: Animals; Cell Compartmentation; Cell Differentiation; Cell Line, Tumor; Enhancer of Zeste Homolog 2 Protein; Histones; Humans; Immunohistochemistry; Inflammation; Lysine; Male; Methylation; Mice; Organ Specificity; Polycomb Repressive Complex 2; Prostate; Prostatectomy; Prostatic Neoplasms; Protein Processing, Post-Translational; Proto-Oncogene Proteins c-myc; RNA, Small Interfering; Stem Cells; Tissue Array Analysis

2012
The histone H3 Lys 27 demethylase JMJD3 regulates gene expression by impacting transcriptional elongation.
    Genes & development, 2012, Jun-15, Volume: 26, Issue:12

    Topics: Binding Sites; Cell Cycle Proteins; Cell Differentiation; Gene Expression Regulation, Neoplastic; Histones; HL-60 Cells; Humans; Jumonji Domain-Containing Histone Demethylases; Lysine; Macrophages; Methylation; Models, Biological; Phenotype; RNA Polymerase II; Tetradecanoylphorbol Acetate; Transcription Factors; Transcription, Genetic

2012
Histone H3R2 symmetric dimethylation and histone H3K4 trimethylation are tightly correlated in eukaryotic genomes.
    Cell reports, 2012, Feb-23, Volume: 1, Issue:2

    Topics: Animals; Arginine; Conserved Sequence; Eukaryota; Evolution, Molecular; Genetic Loci; Genome; Histone-Lysine N-Methyltransferase; Histones; Lysine; Methylation; Mice; Receptors, Antigen; Recombination, Genetic; RNA, Small Interfering; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins

2012
PGC7 binds histone H3K9me2 to protect against conversion of 5mC to 5hmC in early embryos.
    Nature, 2012, Jun-03, Volume: 486, Issue:7403

    Topics: 5-Methylcytosine; Animals; Chromatin; Chromosomal Proteins, Non-Histone; Cytosine; Dioxygenases; DNA Methylation; DNA-Binding Proteins; Embryo, Mammalian; Embryonic Development; Female; Genomic Imprinting; Histones; Lysine; Male; Methylation; Mice; Protein Binding; Proto-Oncogene Proteins; ras-GRF1; Repressor Proteins; RNA, Long Noncoding; RNA, Untranslated; Spermatozoa

2012
Embryonic stem cell potency fluctuates with endogenous retrovirus activity.
    Nature, 2012, Jul-05, Volume: 487, Issue:7405

    Topics: Animals; Cell Dedifferentiation; Cell Lineage; Chimera; Chromatin; Embryo, Mammalian; Embryonic Stem Cells; Endogenous Retroviruses; Epigenesis, Genetic; Female; Gene Expression Regulation, Developmental; Genes, Reporter; Histones; Induced Pluripotent Stem Cells; Lysine; Methylation; Mice; Phenotype; Pluripotent Stem Cells; Terminal Repeat Sequences; Totipotent Stem Cells; Transcriptome

2012
The cation-π interaction at protein-protein interaction interfaces: developing and learning from synthetic mimics of proteins that bind methylated lysines.
    Accounts of chemical research, 2013, Apr-16, Volume: 46, Issue:4

    Topics: Arginine; Calixarenes; Cations; Humans; Hydrogen Bonding; Lysine; Methylation; Phenols; Protein Interaction Maps; Proteins

2013
Histone H3 lysine 36 methylation targets the Isw1b remodeling complex to chromatin.
    Molecular and cellular biology, 2012, Volume: 32, Issue:17

    Topics: Adenosine Triphosphatases; Amino Acid Sequence; Chromatin; DNA-Binding Proteins; Genes, Fungal; Histones; Lysine; Methylation; Molecular Sequence Data; Protein Structure, Tertiary; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins; Transcriptional Activation

2012
Histone H3 lysine 4 methylation marks postreplicative human cytomegalovirus chromatin.
    Journal of virology, 2012, Volume: 86, Issue:18

    Topics: Base Sequence; Cell Line; Chromatin; Cytomegalovirus; DNA Replication; DNA, Viral; Epigenesis, Genetic; Euchromatin; Genome, Viral; Heterochromatin; Histones; Humans; Lysine; Methylation; Virus Replication

2012
Genome-wide bovine H3K27me3 modifications and the regulatory effects on genes expressions in peripheral blood lymphocytes.
    PloS one, 2012, Volume: 7, Issue:6

    Topics: Animals; Cattle; Chromatin Immunoprecipitation; DNA; Female; Gene Expression Regulation; Genome; Histones; Lactation; Lymphocytes; Lysine; Methylation; Oligonucleotide Array Sequence Analysis; Promoter Regions, Genetic; Real-Time Polymerase Chain Reaction; Sequence Analysis, DNA; Transcription Initiation Site; Transcription, Genetic

2012
The association between H3K4me3 and antisense transcription.
    Genomics, proteomics & bioinformatics, 2012, Volume: 10, Issue:2

    Topics: Animals; Arabidopsis; Binding Sites; Cerebrum; Drosophila; Epigenesis, Genetic; Histones; Humans; Lysine; Male; Methylation; Mice; RNA Polymerase II; RNA, Antisense; Testis; Transcription Initiation Site; Transcription, Genetic; Transcriptional Activation

2012
Nuclear dynamics of histone H3 trimethylated on lysine 9 and/or phosphorylated on serine 10 in mouse cloned embryos as new markers of reprogramming?
    Cellular reprogramming, 2012, Volume: 14, Issue:4

    Topics: Animals; Antigens, Differentiation; Cell Dedifferentiation; Cloning, Organism; Embryo, Mammalian; Epigenesis, Genetic; Gene Expression Regulation, Developmental; Heterochromatin; Histones; Lysine; Methylation; Mice; Phosphorylation; Serine

2012
IVMBIX-01294, an inhibitor of the histone methyltransferase EHMT2, disrupts histone H3 lysine 9 (H3K9) dimethylation in the cleavage-stage porcine embryo.
    Reproduction, fertility, and development, 2012, Volume: 24, Issue:6

    Topics: Animals; Azepines; Cleavage Stage, Ovum; Dose-Response Relationship, Drug; Embryo Culture Techniques; Embryo Transfer; Embryo, Mammalian; Embryonic Development; Enzyme Inhibitors; Female; Fertilization in Vitro; Gene Expression Regulation, Developmental; Histone-Lysine N-Methyltransferase; Histones; Lysine; Methylation; Pregnancy; Pregnancy Rate; Quinazolines; RNA, Messenger; Swine; Time Factors; Transcription, Genetic

2012
Prediction of protein methylation sites using conditional random field.
    Protein and peptide letters, 2013, Volume: 20, Issue:1

    Topics: Arginine; Lysine; Markov Chains; Methylation; Protein Processing, Post-Translational; Proteins; ROC Curve; Sequence Analysis, Protein

2013
A method to distinguish between lysine acetylation and lysine methylation from protein sequences.
    Journal of theoretical biology, 2012, Oct-07, Volume: 310

    Topics: Acetylation; Amino Acid Sequence; Amino Acids; Databases, Protein; Lysine; Methylation; Molecular Sequence Data; Position-Specific Scoring Matrices; Protein Structure, Secondary; Proteins; Sequence Analysis, Protein; Support Vector Machine

2012
Quantitative modulation of polycomb silencing underlies natural variation in vernalization.
    Science (New York, N.Y.), 2012, Aug-03, Volume: 337, Issue:6094

    Topics: Arabidopsis; Arabidopsis Proteins; Chromatin; Chromatin Immunoprecipitation; Cold Temperature; DNA-Binding Proteins; Enhancer Elements, Genetic; Flowers; Gene Expression Regulation, Plant; Gene Silencing; Histones; Lysine; MADS Domain Proteins; Methylation; Polycomb Repressive Complex 2; Polycomb-Group Proteins; Polymorphism, Genetic; Repressor Proteins; Seasons

2012
Identification of a novel function for the chromatin remodeling protein ING2 in muscle differentiation.
    PloS one, 2012, Volume: 7, Issue:7

    Topics: Amino Acid Motifs; Animals; Binding Sites; Cell Differentiation; Chromatin Assembly and Disassembly; Gene Knockdown Techniques; Histones; Homeodomain Proteins; Humans; Leucine Zippers; Lysine; Methylation; Mice; Muscle Cells; Muscle Development; Muscle, Skeletal; Myoblasts; Protein Binding; Protein Structure, Tertiary; Tumor Suppressor Proteins

2012
Methylation of lysine 9 in histone H3 directs alternative modes of highly dynamic interaction of heterochromatin protein hHP1β with the nucleosome.
    The Journal of biological chemistry, 2012, Sep-28, Volume: 287, Issue:40

    Topics: Biotinylation; Calorimetry; Chromatin; Chromobox Protein Homolog 5; Chromosomal Proteins, Non-Histone; DNA; Epigenesis, Genetic; Histones; Humans; Lysine; Magnetic Resonance Spectroscopy; Methylation; Nucleosomes; Protein Binding; Protein Structure, Tertiary; Schizosaccharomyces

2012
Methylation of histone H3 at lysine 4 and expression of the maltase-glucoamylase gene are reduced by dietary resistant starch.
    The Journal of nutritional biochemistry, 2013, Volume: 24, Issue:3

    Topics: Acetylation; alpha-Glucosidases; Animals; Body Weight; Diet; Dietary Carbohydrates; Digestion; Gene Expression Regulation, Enzymologic; Genetic Loci; Histones; Jejunum; Lysine; Male; Methylation; Promoter Regions, Genetic; Rats; Rats, Wistar; RNA, Messenger; Starch; Transcription Factors

2013
NEDDylation regulates E2F-1-dependent transcription.
    EMBO reports, 2012, Volume: 13, Issue:9

    Topics: Cell Line, Tumor; Cell Proliferation; E2F1 Transcription Factor; Humans; Lysine; Methylation; NEDD8 Protein; Protein Stability; Transcription, Genetic; Ubiquitination; Ubiquitins

2012
A selective jumonji H3K27 demethylase inhibitor modulates the proinflammatory macrophage response.
    Nature, 2012, Aug-16, Volume: 488, Issue:7411

    Topics: Amino Acid Sequence; Animals; Biocatalysis; Catalytic Domain; Cells, Cultured; Enzyme Inhibitors; Evolution, Molecular; Histones; Humans; Inhibitory Concentration 50; Jumonji Domain-Containing Histone Demethylases; Lysine; Macrophages; Methylation; Mice; Models, Molecular; Substrate Specificity; Tumor Necrosis Factor-alpha

2012
Histone methylation analysis and pathway predictions in chickens after MDV infection.
    PloS one, 2012, Volume: 7, Issue:7

    Topics: Animals; Chickens; Chromatin Immunoprecipitation; Disease Resistance; Disease Susceptibility; Genomics; Histones; Lysine; Marek Disease; Methylation; MicroRNAs; Poultry Diseases; Sequence Analysis, DNA; Species Specificity; Spleen; Transcriptome

2012
Carm1 regulates Pax7 transcriptional activity through MLL1/2 recruitment during asymmetric satellite stem cell divisions.
    Cell stem cell, 2012, Sep-07, Volume: 11, Issue:3

    Topics: Amino Acid Motifs; Amino Acid Sequence; Animals; Arginine; Cell Division; DNA; HEK293 Cells; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation; Mice; Molecular Sequence Data; Myeloid-Lymphoid Leukemia Protein; Myogenic Regulatory Factor 5; PAX7 Transcription Factor; Promoter Regions, Genetic; Protein Binding; Protein Structure, Tertiary; Protein-Arginine N-Methyltransferases; Satellite Cells, Skeletal Muscle; Stem Cells; Substrate Specificity; Transcription, Genetic

2012
PHF20 is an effector protein of p53 double lysine methylation that stabilizes and activates p53.
    Nature structural & molecular biology, 2012, Volume: 19, Issue:9

    Topics: Antigens, Neoplasm; Biomarkers, Tumor; Cell Line; Cell Line, Tumor; Crystallography, X-Ray; DNA Damage; DNA-Binding Proteins; Gene Knockdown Techniques; Humans; Lysine; Methylation; Models, Molecular; Protein Multimerization; Protein Stability; Protein Structure, Tertiary; Transcription Factors; Tumor Suppressor Protein p53; Ubiquitination; Up-Regulation

2012
Total kinetic analysis reveals how combinatorial methylation patterns are established on lysines 27 and 36 of histone H3.
    Proceedings of the National Academy of Sciences of the United States of America, 2012, Aug-21, Volume: 109, Issue:34

    Topics: Biochemistry; Cell Line; Combinatorial Chemistry Techniques; Epigenomics; Histone-Lysine N-Methyltransferase; Histones; Humans; Kinetics; Lysine; Mass Spectrometry; Methylation; Methyltransferases; Repressor Proteins

2012
Rhythmic oscillation of histone acetylation and methylation at the Arabidopsis central clock loci.
    Molecules and cells, 2012, Volume: 34, Issue:3

    Topics: Acetylation; Arabidopsis; Arabidopsis Proteins; Circadian Clocks; Circadian Rhythm; DNA-Binding Proteins; Gene Expression Regulation, Plant; Histones; Lysine; Methylation; Transcription Factors

2012
Mechanisms of histone H3 lysine 27 trimethylation remodeling during early mammalian development.
    Epigenetics, 2012, Volume: 7, Issue:9

    Topics: Animals; Cattle; Cellular Reprogramming; Chromatin Assembly and Disassembly; Embryonic Development; Gene Expression Regulation, Developmental; Histones; Lysine; Methylation; Mice; Protein Processing, Post-Translational; Swine

2012
A method to site-specifically incorporate methyl-lysine analogues into recombinant proteins.
    Methods in enzymology, 2012, Volume: 512

    Topics: Buffers; Dithiothreitol; Histones; Lysine; Methylation; Oxidation-Reduction; Recombinant Proteins; Reducing Agents; Staining and Labeling; Xenopus Proteins

2012
Set2 methylation of histone H3 lysine 36 suppresses histone exchange on transcribed genes.
    Nature, 2012, Sep-20, Volume: 489, Issue:7416

    Topics: Acetylation; Cell Cycle Proteins; Genes, Fungal; Histones; Lysine; Methylation; Methyltransferases; Molecular Chaperones; Open Reading Frames; Phenotype; RNA Polymerase II; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins; Transcription, Genetic

2012
Dense chromatin activates Polycomb repressive complex 2 to regulate H3 lysine 27 methylation.
    Science (New York, N.Y.), 2012, Aug-24, Volume: 337, Issue:6097

    Topics: Amino Acid Sequence; Animals; CD4-Positive T-Lymphocytes; Chromatin Immunoprecipitation; Cytochrome P-450 Enzyme System; Drosophila melanogaster; Drosophila Proteins; Embryonic Stem Cells; Gene Silencing; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation; Mice; Molecular Sequence Data; Mutagenesis; Nucleosomes; Peptide Fragments; Polycomb Repressive Complex 2; Polycomb-Group Proteins; Repressor Proteins; Retinoic Acid 4-Hydroxylase; Transcription, Genetic

2012
Lysine methylation of VCP by a member of a novel human protein methyltransferase family.
    Nature communications, 2012, Volume: 3

    Topics: Adenosine Triphosphatases; Amino Acid Motifs; Amino Acid Sequence; Cell Cycle Proteins; Cell Line; Humans; Lysine; Methylation; Methyltransferases; Molecular Sequence Data; Multigene Family; Sequence Alignment; Valosin Containing Protein

2012
Mouse oocyte meiosis is disturbed by knockdown of Suv4-20h.
    Reproduction, fertility, and development, 2013, Volume: 25, Issue:3

    Topics: Animals; Centromere; Epigenesis, Genetic; Female; Gene Expression Regulation, Developmental; Heterochromatin; Histone-Lysine N-Methyltransferase; Histones; Isoenzymes; Lysine; Meiosis; Metaphase; Methylation; Mice; Oocytes; Oogenesis; Polar Bodies; Protein Processing, Post-Translational; RNA Interference; RNA, Messenger

2013
Histone H3 lysine 4 monomethylation (H3K4me1) and H3 lysine 9 monomethylation (H3K9me1): distribution and their association in regulating gene expression under hyperglycaemic/hyperinsulinemic conditions in 3T3 cells.
    Biochimie, 2012, Volume: 94, Issue:12

    Topics: 3T3 Cells; Acetylation; Animals; Chromatin Assembly and Disassembly; Chromatin Immunoprecipitation; Cluster Analysis; Gene Expression; Gene Expression Profiling; Histone Acetyltransferases; Histone Deacetylases; Histone Demethylases; Histones; Hyperglycemia; Hyperinsulinism; Hypoglycemic Agents; Insulin; Jumonji Domain-Containing Histone Demethylases; Lysine; Methylation; Mice; Oligonucleotide Array Sequence Analysis; Oxidoreductases, N-Demethylating

2012
Chromatin structure of ribosomal RNA genes in dipterans and its relationship to the location of nucleolar organizers.
    PloS one, 2012, Volume: 7, Issue:8

    Topics: Animals; Chironomidae; Chromatin; Diptera; DNA, Ribosomal; Drosophila melanogaster; Electrophoretic Mobility Shift Assay; Histones; Lysine; Methylation; Nucleolus Organizer Region; Repetitive Sequences, Nucleic Acid; RNA, Ribosomal

2012
Study of methylation of histone H3 lysine 9 and H3 lysine 27 during X chromosome inactivation in three types of cells.
    Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology, 2012, Volume: 20, Issue:6

    Topics: Cell Line; Chromatin Immunoprecipitation; DNA Primers; Fluorescent Antibody Technique, Indirect; HeLa Cells; Histones; Humans; Lysine; Methylation; Polymerase Chain Reaction; X Chromosome Inactivation

2012
The cellular level of histone H3 lysine 4 dimethylation correlates with response to adjuvant gemcitabine in Japanese pancreatic cancer patients treated with surgery.
    European journal of surgical oncology : the journal of the European Society of Surgical Oncology and the British Association of Surgical Oncology, 2012, Volume: 38, Issue:11

    Topics: Adult; Aged; Aged, 80 and over; Antimetabolites, Antineoplastic; Chemotherapy, Adjuvant; Deoxycytidine; Disease-Free Survival; Female; Gemcitabine; Histones; Humans; Immunohistochemistry; Lysine; Male; Methylation; Middle Aged; Pancreatic Neoplasms

2012
Lysine methylation strategies for characterizing protein conformations by NMR.
    Journal of biomolecular NMR, 2012, Volume: 54, Issue:2

    Topics: Carbon Isotopes; Hydrogen-Ion Concentration; Kinetics; Lysine; Methylation; Nuclear Magnetic Resonance, Biomolecular; Protein Conformation; Proteins

2012
Argonaute proteins couple chromatin silencing to alternative splicing.
    Nature structural & molecular biology, 2012, Volume: 19, Issue:10

    Topics: Alternative Splicing; Animals; Argonaute Proteins; Chromatin; Chromosomal Proteins, Non-Histone; DEAD-box RNA Helicases; Eukaryotic Initiation Factors; Fibroblasts; HeLa Cells; Histones; Humans; Hyaluronan Receptors; Lysine; Methylation; Mice; Ribonuclease III; RNA Precursors; RNA, Small Interfering; Spliceosomes

2012
Epigenetic regulation of cell adhesion and communication by enhancer of zeste homolog 2 in human endothelial cells.
    Hypertension (Dallas, Tex. : 1979), 2012, Volume: 60, Issue:5

    Topics: Cell Adhesion; Cell Communication; Cell Movement; Cells, Cultured; Chromatin Immunoprecipitation; Enhancer of Zeste Homolog 2 Protein; Epigenomics; Gene Expression Profiling; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Histones; Human Umbilical Vein Endothelial Cells; Humans; Lysine; Methylation; Neovascularization, Physiologic; Oligonucleotide Array Sequence Analysis; Polycomb Repressive Complex 2; RNA Interference

2012
Epigenetic modifications and mRNA levels of the imprinted gene Grb10 in serially passaged fibroblast cells.
    Biochimie, 2012, Volume: 94, Issue:12

    Topics: 5-Methylcytosine; Acetylation; Animals; Cell Proliferation; Chromatin Immunoprecipitation; CpG Islands; DNA Methylation; Epigenesis, Genetic; Fibroblasts; Gene Expression; Genomic Imprinting; GRB10 Adaptor Protein; Histones; Immunohistochemistry; Lysine; Methylation; Mice; Reverse Transcriptase Polymerase Chain Reaction; RNA, Messenger; Sequence Analysis, DNA; Time Factors

2012
LC2 and OsVIL2 promote rice flowering by photoperoid-induced epigenetic silencing of OsLF.
    Molecular plant, 2013, Volume: 6, Issue:2

    Topics: Flowers; Gene Silencing; Histones; Light; Lysine; Methylation; Oryza; Photoperiod; Plant Proteins; Promoter Regions, Genetic; Repressor Proteins

2013
Induction of aberrant trimethylation of histone H3 lysine 27 by inflammation in mouse colonic epithelial cells.
    Carcinogenesis, 2012, Volume: 33, Issue:12

    Topics: Aging; Animals; Apoptosis Regulatory Proteins; Calcium-Calmodulin-Dependent Protein Kinases; Colitis; Colon; Death-Associated Protein Kinases; Dextran Sulfate; Epithelial Cells; Gene Expression; Histones; Intestinal Mucosa; Lysine; Male; Methylation; Mice; Mice, Inbred BALB C; Neoplasms

2012
A transcription factor-based mechanism for mouse heterochromatin formation.
    Nature structural & molecular biology, 2012, Volume: 19, Issue:10

    Topics: Animals; Base Sequence; Binding Sites; Cell Cycle; Chromosome Segregation; DNA, Satellite; Fibroblasts; Genome; Heterochromatin; Histones; Lysine; Methylation; Methyltransferases; Mice; Mice, Mutant Strains; Molecular Sequence Data; Paired Box Transcription Factors; PAX3 Transcription Factor; PAX5 Transcription Factor; PAX7 Transcription Factor; PAX9 Transcription Factor; Repressor Proteins

2012
Enhanced HSP70 lysine methylation promotes proliferation of cancer cells through activation of Aurora kinase B.
    Nature communications, 2012, Volume: 3

    Topics: Animals; Aurora Kinase B; Aurora Kinases; Blotting, Western; Cell Line, Tumor; Cell Proliferation; Chlorocebus aethiops; COS Cells; HSP70 Heat-Shock Proteins; Humans; Immunohistochemistry; Immunoprecipitation; Lysine; Methylation; Protein Binding; Protein Serine-Threonine Kinases; Tissue Array Analysis

2012
Cell signaling, post-translational protein modifications and NMR spectroscopy.
    Journal of biomolecular NMR, 2012, Volume: 54, Issue:3

    Topics: Acetylation; Acylation; Alkylation; Amino Acids; Arginine; Cell Communication; Eukaryotic Cells; Glycosylation; Histidine; Lysine; Magnetic Resonance Spectroscopy; Methylation; Phosphorylation; Protein Processing, Post-Translational; Proteins; Serine; Threonine; Tyrosine

2012
Small-molecule histone methyltransferase inhibitors display rapid antimalarial activity against all blood stage forms in Plasmodium falciparum.
    Proceedings of the National Academy of Sciences of the United States of America, 2012, Oct-09, Volume: 109, Issue:41

    Topics: Amino Acid Sequence; Animals; Antimalarials; Azepines; Blotting, Western; Cells, Cultured; Dose-Response Relationship, Drug; Erythrocytes; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Histones; Humans; Life Cycle Stages; Lysine; Malaria; Methylation; Mice; Mice, Inbred C57BL; Molecular Sequence Data; Parasitemia; Plasmodium berghei; Plasmodium falciparum; Quinazolines; Sequence Homology, Amino Acid

2012
H3K9 trimethylation precedes DNA methylation during sheep oogenesis: HDAC1, SUV39H1, G9a, HP1, and Dnmts are involved in these epigenetic events.
    The journal of histochemistry and cytochemistry : official journal of the Histochemistry Society, 2013, Volume: 61, Issue:1

    Topics: Animals; Chromobox Protein Homolog 5; Chromosomal Proteins, Non-Histone; Computer Simulation; DNA (Cytosine-5-)-Methyltransferases; DNA Methylation; DNA Methyltransferase 3A; Epigenesis, Genetic; Histone Deacetylase 1; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Histones; Immunohistochemistry; Lysine; Methylation; Oogenesis; Sheep

2013
A selective inhibitor of EZH2 blocks H3K27 methylation and kills mutant lymphoma cells.
    Nature chemical biology, 2012, Volume: 8, Issue:11

    Topics: Antineoplastic Agents; Cell Cycle; Cell Death; Cell Proliferation; Dose-Response Relationship, Drug; Enhancer of Zeste Homolog 2 Protein; Enzyme Inhibitors; Histones; Humans; Indazoles; Lymphoma; Lysine; Methylation; Molecular Structure; Point Mutation; Polycomb Repressive Complex 2; Pyridones; Structure-Activity Relationship

2012
Acute stress and hippocampal histone H3 lysine 9 trimethylation, a retrotransposon silencing response.
    Proceedings of the National Academy of Sciences of the United States of America, 2012, Oct-23, Volume: 109, Issue:43

    Topics: Animals; Chromatin Immunoprecipitation; Corticosterone; DNA; Gene Silencing; Hippocampus; Histones; Lysine; Male; Methylation; Rats; Rats, Sprague-Dawley; Receptors, Glucocorticoid; Retroelements; Stress, Physiological

2012
Neonatal isolation decreases cued fear conditioning and frontal cortical histone 3 lysine 9 methylation in adult female rats.
    European journal of pharmacology, 2012, Dec-15, Volume: 697, Issue:1-3

    Topics: Acoustic Stimulation; Age Factors; Animals; Animals, Newborn; Azacitidine; Behavior, Animal; Cerebral Cortex; Conditioning, Psychological; Corticosterone; Cues; Decitabine; DNA Modification Methylases; Dose-Response Relationship, Drug; Down-Regulation; Estradiol; Fear; Female; Histone Deacetylase Inhibitors; Histones; Light; Lysine; Maternal Deprivation; Methylation; Photic Stimulation; Rats; Rats, Sprague-Dawley; Reflex, Startle; Stress, Psychological; Valproic Acid

2012
Stage and gene specific signatures defined by histones H3K4me2 and H3K27me3 accompany mammalian retina maturation in vivo.
    PloS one, 2012, Volume: 7, Issue:10

    Topics: Animals; Cell Lineage; Chromatin Immunoprecipitation; Epigenesis, Genetic; Genomics; Histones; Lysine; Methylation; Mice; Organogenesis; Retina; Retinal Rod Photoreceptor Cells; Transcriptome

2012
New partners in regulation of gene expression: the enhancer of Trithorax and Polycomb Corto interacts with methylated ribosomal protein l12 via its chromodomain.
    PLoS genetics, 2012, Volume: 8, Issue:10

    Topics: Amino Acid Sequence; Animals; Animals, Genetically Modified; Chromatin; Chromosomal Proteins, Non-Histone; DNA-Binding Proteins; Drosophila melanogaster; Drosophila Proteins; Gene Expression; Gene Expression Profiling; Gene Expression Regulation; Genome-Wide Association Study; HSP70 Heat-Shock Proteins; Lysine; Methylation; Molecular Sequence Data; Phenotype; Polycomb Repressive Complex 1; Polytene Chromosomes; Protein Binding; Protein Interaction Domains and Motifs; Ribosomal Proteins; Sequence Alignment; Transcription, Genetic; Transcriptome

2012
Loss of LSD1 (lysine-specific demethylase 1) suppresses growth and alters gene expression of human colon cancer cells in a p53- and DNMT1(DNA methyltransferase 1)-independent manner.
    The Biochemical journal, 2013, Jan-15, Volume: 449, Issue:2

    Topics: Animals; Blotting, Western; Cell Proliferation; Cluster Analysis; Colonic Neoplasms; DNA (Cytosine-5-)-Methyltransferase 1; DNA (Cytosine-5-)-Methyltransferases; DNA Methylation; Female; Gene Expression Profiling; Gene Expression Regulation, Neoplastic; Gene Knockout Techniques; HCT116 Cells; Histone Demethylases; Histones; Humans; Lysine; Methylation; Mice; Mice, Nude; Neoplasms, Experimental; Oligonucleotide Array Sequence Analysis; Transplantation, Heterologous; Tumor Suppressor Protein p53

2013
Distinct mode of methylated lysine-4 of histone H3 recognition by tandem tudor-like domains of Spindlin1.
    Proceedings of the National Academy of Sciences of the United States of America, 2012, Oct-30, Volume: 109, Issue:44

    Topics: Amino Acid Sequence; Cell Cycle Proteins; Crystallography, X-Ray; Histones; Lysine; Methylation; Microtubule-Associated Proteins; Models, Molecular; Molecular Sequence Data; Phosphoproteins; Sequence Homology, Amino Acid

2012
G9a mediates Sharp-1-dependent inhibition of skeletal muscle differentiation.
    Molecular biology of the cell, 2012, Volume: 23, Issue:24

    Topics: Animals; Blotting, Western; Cell Differentiation; Cell Line; Gene Expression Regulation; HEK293 Cells; Histone-Lysine N-Methyltransferase; Histones; Humans; Luciferases; Lysine; Methylation; Mice; Microscopy, Fluorescence; Muscle, Skeletal; Mutation; Myoblasts; MyoD Protein; Myogenin; NIH 3T3 Cells; Promoter Regions, Genetic; Protein Binding; RNA Interference; Transcription Factors

2012
Histone H3K4 demethylation is negatively regulated by histone H3 acetylation in Saccharomyces cerevisiae.
    Proceedings of the National Academy of Sciences of the United States of America, 2012, Nov-06, Volume: 109, Issue:45

    Topics: Acetylation; Gene Expression Regulation, Fungal; Histone Acetyltransferases; Histones; Jumonji Domain-Containing Histone Demethylases; Lysine; Methylation; Models, Biological; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins; Substrate Specificity

2012
Coordinated repression of cell cycle genes by KDM5A and E2F4 during differentiation.
    Proceedings of the National Academy of Sciences of the United States of America, 2012, Nov-06, Volume: 109, Issue:45

    Topics: Animals; Cell Differentiation; Chromatin Immunoprecipitation; E2F4 Transcription Factor; Embryonic Stem Cells; Genes, cdc; Histones; Humans; Lysine; Methylation; Mice; Mice, Inbred C57BL; Multiprotein Complexes; Protein Binding; Repressor Proteins; Retinoblastoma-Binding Protein 2; U937 Cells

2012
Lamin B receptor recognizes specific modifications of histone H4 in heterochromatin formation.
    The Journal of biological chemistry, 2012, Dec-14, Volume: 287, Issue:51

    Topics: Amino Acid Sequence; HEK293 Cells; HeLa Cells; Heterochromatin; Histones; Humans; Lamin B Receptor; Lamin Type B; Lysine; Methylation; Models, Biological; Molecular Sequence Data; Nuclear Envelope; Protein Binding; Protein Multimerization; Protein Processing, Post-Translational; Protein Structure, Tertiary; Receptors, Cytoplasmic and Nuclear; Repressor Proteins; Transcription, Genetic

2012
Hinge and chromoshadow of HP1α participate in recognition of K9 methylated histone H3 in nucleosomes.
    Journal of molecular biology, 2013, Jan-09, Volume: 425, Issue:1

    Topics: Amino Acid Sequence; Chromobox Protein Homolog 5; Chromosomal Proteins, Non-Histone; Electrophoretic Mobility Shift Assay; Escherichia coli; Heterochromatin; Histones; Humans; Lysine; Methylation; Models, Molecular; Neurospora crassa; Nucleosomes; Protein Binding; Protein Structure, Tertiary; Recombinant Fusion Proteins; Sequence Deletion; Substrate Specificity

2013
Identification and characterization of an epi-allele of FIE1 reveals a regulatory linkage between two epigenetic marks in rice.
    The Plant cell, 2012, Volume: 24, Issue:11

    Topics: Alleles; DNA Methylation; Epigenetic Repression; Flowers; Gene Expression; Gene Expression Regulation, Plant; Genes, Dominant; Genomic Imprinting; Heterochromatin; Histones; Lysine; Methylation; Mutation; Oryza; Phenotype; Plant Proteins; Polycomb Repressive Complex 2; Seedlings; Two-Hybrid System Techniques

2012
The COMPASS subunit Spp1 links histone methylation to initiation of meiotic recombination.
    Science (New York, N.Y.), 2013, Jan-11, Volume: 339, Issue:6116

    Topics: Chromatin; Chromosomes, Fungal; DNA Breaks, Double-Stranded; DNA-Binding Proteins; Endodeoxyribonucleases; Histones; Lysine; Meiosis; Methylation; Protein Subunits; Recombination, Genetic; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins

2013
Structural insight into coordinated recognition of trimethylated histone H3 lysine 9 (H3K9me3) by the plant homeodomain (PHD) and tandem tudor domain (TTD) of UHRF1 (ubiquitin-like, containing PHD and RING finger domains, 1) protein.
    The Journal of biological chemistry, 2013, Jan-11, Volume: 288, Issue:2

    Topics: Binding Sites; CCAAT-Enhancer-Binding Proteins; Crystallization; Fluorescence Resonance Energy Transfer; Histones; Humans; Lysine; Methylation; Protein Conformation; RING Finger Domains; Ubiquitin-Protein Ligases; Ubiquitination

2013
Histone H3K9 methyltransferase G9a represses PPARγ expression and adipogenesis.
    The EMBO journal, 2013, Jan-09, Volume: 32, Issue:1

    Topics: 3T3-L1 Cells; Adipocytes, Brown; Adipogenesis; Animals; CCAAT-Enhancer-Binding Protein-beta; Cell Differentiation; Chromatin; Chromatin Immunoprecipitation; Epigenesis, Genetic; Female; Histone Demethylases; Histone-Lysine N-Methyltransferase; Histones; Lysine; Male; Methylation; Mice; Mice, Knockout; Nerve Tissue Proteins; PPAR gamma; Promoter Regions, Genetic; Sequence Analysis, DNA; Sequence Deletion; Wnt Proteins

2013
Aberrant patterns of H3K4 and H3K27 histone lysine methylation occur across subgroups in medulloblastoma.
    Acta neuropathologica, 2013, Volume: 125, Issue:3

    Topics: Base Sequence; Cerebellar Neoplasms; Cohort Studies; DNA-Binding Proteins; Female; Genetic Predisposition to Disease; Genome; Histone Demethylases; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Humans; Lysine; Male; Medulloblastoma; Methylation; Mutation; Neoplasm Proteins; Nuclear Proteins; Polymorphism, Single Nucleotide

2013
Epigenetic regulation of CXCR4 expression by the ocular microenvironment.
    Investigative ophthalmology & visual science, 2013, Jan-09, Volume: 54, Issue:1

    Topics: Animals; Anterior Chamber; Antimetabolites, Antineoplastic; Azacitidine; Cecum; Cell Line, Tumor; Decitabine; Down-Regulation; Epigenesis, Genetic; Flow Cytometry; Gene Expression; Gene Expression Regulation, Neoplastic; Histone Deacetylase Inhibitors; Histone Deacetylases; Histones; Hydroxamic Acids; Injections; Injections, Subcutaneous; Lysine; Methylation; Mice; Mice, Inbred BALB C; Neoplasm Transplantation; Promoter Regions, Genetic; Receptors, CXCR4; Reverse Transcriptase Polymerase Chain Reaction; Spleen; Up-Regulation

2013
The histone H3K27 methylation mark regulates intestinal epithelial cell density-dependent proliferation and the inflammatory response.
    Journal of cellular biochemistry, 2013, Volume: 114, Issue:5

    Topics: Animals; beta Catenin; Cell Count; Cell Differentiation; Cell Line; Cell Proliferation; Enhancer of Zeste Homolog 2 Protein; Epithelial Cells; Gene Expression Regulation; Histones; Inflammation; Interleukin-1beta; Intestinal Mucosa; Intestines; Lysine; Methylation; Mice; Microvilli; Neurons; Polycomb Repressive Complex 2; Rats; Signal Transduction; STAT3 Transcription Factor

2013
Gene regulation by the lysine demethylase KDM4A in Drosophila.
    Developmental biology, 2013, Jan-15, Volume: 373, Issue:2

    Topics: Alleles; Animals; Chromobox Protein Homolog 5; Chromosomal Proteins, Non-Histone; Drosophila melanogaster; Drosophila Proteins; Gene Expression Regulation, Developmental; Histone Demethylases; Histones; Lysine; Male; Methylation

2013
Selective molecular recognition of methylated lysines and arginines by cucurbit[6]uril and cucurbit[7]uril in aqueous solution.
    Organic & biomolecular chemistry, 2013, Jan-21, Volume: 11, Issue:3

    Topics: Arginine; Bridged-Ring Compounds; Imidazoles; Lysine; Methylation; Molecular Structure; Solutions; Water

2013
Impact of histone H4 lysine 20 methylation on 53BP1 responses to chromosomal double strand breaks.
    PloS one, 2012, Volume: 7, Issue:11

    Topics: Animals; Cell Line; Chromatin; Chromosomal Proteins, Non-Histone; DNA Breaks, Double-Stranded; DNA Repair; DNA-Binding Proteins; Histone-Lysine N-Methyltransferase; Histones; Humans; Kinetics; Lasers; Lysine; Methylation; Mice; Protein Transport; Tumor Suppressor p53-Binding Protein 1; Ubiquitin-Protein Ligases

2012
Utilization of lysine ¹³C-methylation NMR for protein-protein interaction studies.
    Journal of biomolecular NMR, 2013, Volume: 55, Issue:1

    Topics: Carbon Isotopes; Endopeptidases; Humans; Lysine; Methylation; Molecular Docking Simulation; Nuclear Magnetic Resonance, Biomolecular; Protein Binding; Protein Conformation; Protein Interaction Mapping; Proteins; Ubiquitin

2013
Ordered changes in histone modifications at the core of the Arabidopsis circadian clock.
    Proceedings of the National Academy of Sciences of the United States of America, 2012, Dec-26, Volume: 109, Issue:52

    Topics: Arabidopsis; Arabidopsis Proteins; Circadian Clocks; Gene Expression Regulation, Plant; Genes, Plant; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Histones; Lysine; Methylation; Protein Binding; Protein Processing, Post-Translational; Repressor Proteins

2012
H3K36 methylation is involved in promoting rice flowering.
    Molecular plant, 2013, Volume: 6, Issue:3

    Topics: Flowers; Gene Expression Regulation, Plant; Gene Knockdown Techniques; Histones; Lysine; Methylation; Mutation; Oryza; Phenotype; Plant Proteins

2013
G9a co-localized with histone H3 lysine 9 monomethylation but not dimethylation in a nuclear membrane-dependent manner during mouse preimplantation embryo development.
    Journal of assisted reproduction and genetics, 2013, Volume: 30, Issue:3

    Topics: Animals; Blastocyst; Embryonic Development; Female; Gene Expression Regulation, Developmental; Histone-Lysine N-Methyltransferase; Histones; Lysine; Methylation; Mice; Nuclear Envelope; Nuclear Localization Signals; Pregnancy

2013
Natural variation of H3K27me3 distribution between two Arabidopsis accessions and its association with flanking transposable elements.
    Genome biology, 2012, Dec-19, Volume: 13, Issue:12

    Topics: Arabidopsis; Chromatin; DNA Transposable Elements; Epigenesis, Genetic; Gene Expression; Gene Expression Regulation, Plant; Genes, Plant; Genetic Variation; Genome, Plant; Histones; Lysine; Methylation

2012
LSD2/KDM1B and its cofactor NPAC/GLYR1 endow a structural and molecular model for regulation of H3K4 demethylation.
    Molecular cell, 2013, Feb-07, Volume: 49, Issue:3

    Topics: Alcohol Oxidoreductases; Amino Acid Sequence; Coenzymes; Crystallography, X-Ray; Enzyme Stability; HeLa Cells; Histones; Humans; Lysine; Methylation; Models, Molecular; Molecular Sequence Data; Oxidoreductases, N-Demethylating; Peptides; Protein Binding; Substrate Specificity

2013
The conserved PHD1-PHD2 domain of ZFP-1/AF10 is a discrete functional module essential for viability in Caenorhabditis elegans.
    Molecular and cellular biology, 2013, Volume: 33, Issue:5

    Topics: Amino Acid Sequence; Animals; Caenorhabditis elegans; Caenorhabditis elegans Proteins; Chromatin; Gene Expression Regulation, Developmental; Histones; Lysine; Methylation; Molecular Sequence Data; Promoter Regions, Genetic; Protein Isoforms; Protein Multimerization; RNA Interference; Sequence Alignment; Transcription Factors; Zinc Fingers

2013
An H3K36 methylation-engaging Tudor motif of polycomb-like proteins mediates PRC2 complex targeting.
    Molecular cell, 2013, Feb-07, Volume: 49, Issue:3

    Topics: Amino Acid Motifs; Animals; Calorimetry; Carrier Proteins; Cell Differentiation; Cell Nucleus; Conserved Sequence; DNA-Binding Proteins; Genetic Complementation Test; Genetic Loci; Histones; Humans; Lysine; Methylation; Mice; Models, Molecular; Nuclear Proteins; Peptides; Pluripotent Stem Cells; Polycomb Repressive Complex 2; Polycomb-Group Proteins; Protein Binding; Protein Transport; Structure-Activity Relationship; Thermodynamics; Transcription Factors

2013
Prediction of methylation sites using the composition of K-spaced amino acid pairs.
    Protein and peptide letters, 2013, Volume: 20, Issue:8

    Topics: Amino Acids; Arginine; Computational Biology; Lysine; Methylation; Protein Processing, Post-Translational; Proteins; Sensitivity and Specificity; Support Vector Machine

2013
Examining post-translational modification-mediated protein-protein interactions using a chemical proteomics approach.
    Protein science : a publication of the Protein Society, 2013, Volume: 22, Issue:3

    Topics: Biomarkers; Cell Division; Chromobox Protein Homolog 5; Chromosomal Proteins, Non-Histone; HeLa Cells; Histones; Humans; Inhibitor of Apoptosis Proteins; Kinesins; Lysine; Methylation; Molecular Probe Techniques; Peptide Fragments; Phosphorylation; Protein Interaction Domains and Motifs; Protein Processing, Post-Translational; Proteomics; Recombinant Proteins; Survivin; Threonine; Yeasts

2013
Transcriptional regulation of 15-lipoxygenase expression by histone h3 lysine 4 methylation/demethylation.
    PloS one, 2012, Volume: 7, Issue:12

    Topics: Arachidonate 15-Lipoxygenase; Cell Line; Chromatin Assembly and Disassembly; Gene Expression Regulation; Histone Demethylases; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation; Models, Biological; Oxidoreductases, N-Demethylating; Promoter Regions, Genetic; Protein Binding; STAT6 Transcription Factor; Transcription, Genetic; Transcriptional Activation

2012
Crystal structure of the human SUV39H1 chromodomain and its recognition of histone H3K9me2/3.
    PloS one, 2012, Volume: 7, Issue:12

    Topics: Amino Acid Sequence; Crystallization; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation; Methyltransferases; Models, Molecular; Molecular Sequence Data; Protein Binding; Protein Interaction Domains and Motifs; Protein Interaction Maps; Protein Structure, Secondary; Repressor Proteins; Sequence Homology, Amino Acid

2012
Decoupling epigenetic and genetic effects through systematic analysis of gene position.
    Cell reports, 2013, Jan-31, Volume: 3, Issue:1

    Topics: Acetylation; Chromatin; Chromosomal Position Effects; Chromosomes, Fungal; Diploidy; Epigenesis, Genetic; Gene Deletion; Gene Expression Regulation, Fungal; Gene Knockout Techniques; Gene Library; Gene Order; Genes, Fungal; Genetic Markers; Heterozygote; Histones; Lysine; Methylation; Mutagenesis, Insertional; Promoter Regions, Genetic; Protein Binding; Protein Processing, Post-Translational; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins; Signal Transduction

2013
[Investigation of histone H3 methylation during long term memory formation].
    Rossiiskii fiziologicheskii zhurnal imeni I.M. Sechenova, 2012, Volume: 98, Issue:9

    Topics: Animals; Appetitive Behavior; Blotting, Western; Central Nervous System; Chromatin Assembly and Disassembly; Epigenesis, Genetic; Helix, Snails; Histones; Lysine; Memory, Long-Term; Methylation; Protein Processing, Post-Translational; Transcription, Genetic

2012
Lysyl 5-hydroxylation, a novel histone modification, by Jumonji domain containing 6 (JMJD6).
    The Journal of biological chemistry, 2013, Mar-01, Volume: 288, Issue:9

    Topics: Acetylation; Animals; Chromosomes, Mammalian; HEK293 Cells; Histones; Humans; Hydroxylation; Jumonji Domain-Containing Histone Demethylases; Lysine; Male; Methylation; Mice; Mice, Knockout; Organ Specificity; Protein Processing, Post-Translational; Testis; Transcription, Genetic

2013
Alteration of histone H3 lysine 4 trimethylation on putative lytic gene promoters by human Set1 complex during reactivation of Kaposi's sarcoma-associated herpesvirus.
    Intervirology, 2013, Volume: 56, Issue:2

    Topics: Cell Line; Gene Expression Regulation, Viral; Herpesvirus 8, Human; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation; Promoter Regions, Genetic; Up-Regulation; Viral Proteins; Virus Activation; Virus Latency

2013
Detection of histone modifications at specific gene loci in single cells in histological sections.
    Nature methods, 2013, Volume: 10, Issue:2

    Topics: Animals; Atherosclerosis; Cell Lineage; Chromatin Immunoprecipitation; Epigenesis, Genetic; Fixatives; Formaldehyde; Histones; Humans; In Situ Hybridization; Lysine; Male; Methylation; Mice; Myocytes, Smooth Muscle; Myosin Heavy Chains; Paraffin Embedding

2013
Chd5 requires PHD-mediated histone 3 binding for tumor suppression.
    Cell reports, 2013, Jan-31, Volume: 3, Issue:1

    Topics: Amino Acid Sequence; Animals; Cell Differentiation; Cell Proliferation; Cell Transformation, Neoplastic; DNA Helicases; Genetic Loci; Genome; Histones; Homeodomain Proteins; Humans; Lysine; Methylation; Mice; Models, Molecular; Molecular Sequence Data; Mutation; Neoplasms; Neuroblastoma; Peptides; Protein Binding; Structure-Activity Relationship

2013
The proteomic investigation of chromatin functional domains reveals novel synergisms among distinct heterochromatin components.
    Molecular & cellular proteomics : MCP, 2013, Volume: 12, Issue:3

    Topics: Adenosine Triphosphatases; Animals; Blotting, Western; Chromatin; Chromatin Immunoprecipitation; DNA Damage; HeLa Cells; Heterochromatin; Histones; Humans; Isotope Labeling; Lysine; Methylation; Mice; NIH 3T3 Cells; Phosphorylation; Protein Processing, Post-Translational; Proteome; Proteomics; Tandem Mass Spectrometry; Transcription Factors; Tyrosine

2013
Aqp5 is a new transcriptional target of Dot1a and a regulator of Aqp2.
    PloS one, 2013, Volume: 8, Issue:1

    Topics: Amino Acid Sequence; Animals; Aquaporin 2; Aquaporin 5; Base Sequence; Cell Nucleus; Chromatin Immunoprecipitation; Diabetic Nephropathies; Endoplasmic Reticulum; Golgi Apparatus; Histone-Lysine N-Methyltransferase; Histones; Humans; Kidney; Lysine; Methylation; Methyltransferases; Mice; Molecular Sequence Data; Oligonucleotide Array Sequence Analysis; Polyuria; Protein Binding; Protein Transport; Regulatory Sequences, Nucleic Acid; RNA, Messenger; Transcription, Genetic; Up-Regulation

2013
Induction of the BCMO1 gene during the suckling-weaning transition in rats is associated with histone H3 K4 methylation and subsequent coactivator binding and histone H3 acetylation to the gene.
    Journal of nutritional science and vitaminology, 2012, Volume: 58, Issue:5

    Topics: Acetylation; Animals; Animals, Suckling; beta-Carotene 15,15'-Monooxygenase; Chromatin Immunoprecipitation; Gene Expression Regulation; Histones; Jejunum; Lysine; Methylation; Promoter Regions, Genetic; Rats; Rats, Sprague-Dawley; RNA, Messenger; Thyroid Hormone Receptors alpha; Transcription Factors; Weaning

2012
Histone modification mapping in human brain reveals aberrant expression of histone H3 lysine 79 dimethylation in neural tube defects.
    Neurobiology of disease, 2013, Volume: 54

    Topics: Animals; Blotting, Western; Chromatin Immunoprecipitation; Female; Fetus; Histones; Humans; Lysine; Male; Methylation; Mice; Neural Tube Defects; Protein Processing, Post-Translational; Tandem Mass Spectrometry

2013
Dot1-dependent histone H3K79 methylation promotes activation of the Mek1 meiotic checkpoint effector kinase by regulating the Hop1 adaptor.
    PLoS genetics, 2013, Volume: 9, Issue:1

    Topics: Chromatin Assembly and Disassembly; DNA Breaks, Double-Stranded; DNA-Binding Proteins; Gene Expression Regulation; Histone-Lysine N-Methyltransferase; Histones; Lysine; MAP Kinase Kinase 1; Meiosis; Methylation; Mutation; Nuclear Proteins; Recombination, Genetic; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins

2013
Role of STAT3 and vitamin D receptor in EZH2-mediated invasion of human colorectal cancer.
    The Journal of pathology, 2013, Volume: 230, Issue:3

    Topics: Animals; Base Sequence; Cell Line, Tumor; Colorectal Neoplasms; Down-Regulation; Enhancer of Zeste Homolog 2 Protein; Gene Expression Regulation, Neoplastic; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Matrix Metalloproteinase 2; Matrix Metalloproteinase 9; Methylation; Mice; Mice, Inbred BALB C; Mice, Nude; Molecular Sequence Data; Neoplasm Invasiveness; Polycomb Repressive Complex 2; Receptors, Calcitriol; Recombinant Fusion Proteins; RNA Interference; Signal Transduction; STAT3 Transcription Factor

2013
H3K56me3 is a novel, conserved heterochromatic mark that largely but not completely overlaps with H3K9me3 in both regulation and localization.
    PloS one, 2013, Volume: 8, Issue:2

    Topics: Animals; Cell Cycle; Cell Line; Chromatin; DNA Methylation; HeLa Cells; Heterochromatin; Histones; Humans; Lysine; Methylation; Mice; Microscopy, Fluorescence; Polymerase Chain Reaction

2013
H3K4me3 interactions with TAF3 regulate preinitiation complex assembly and selective gene activation.
    Cell, 2013, Feb-28, Volume: 152, Issue:5

    Topics: Cell Line, Tumor; Histone Code; Histones; Humans; Lysine; Methylation; p300-CBP Transcription Factors; TATA Box; TATA-Binding Protein Associated Factors; Transcription Factor TFIID; Transcription Initiation, Genetic; Transcriptional Activation; Tumor Suppressor Protein p53

2013
Protein-coding cis-natural antisense transcripts have high and broad expression in Arabidopsis.
    Plant physiology, 2013, Volume: 161, Issue:4

    Topics: Acetylation; Arabidopsis; Chromosomes, Plant; Gene Expression Regulation, Plant; Gene Silencing; Genes, Plant; Histones; Lysine; Methylation; Mutation; Open Reading Frames; RNA, Antisense; RNA, Plant; Transcription, Genetic

2013
Quantitative analysis of histone modifications: formaldehyde is a source of pathological n(6)-formyllysine that is refractory to histone deacetylases.
    PLoS genetics, 2013, Volume: 9, Issue:2

    Topics: Acetylation; Formaldehyde; Gene Expression; Histone Deacetylases; Histones; Humans; Lysine; Methylation; Protein Processing, Post-Translational; Respiratory Hypersensitivity

2013
Assembling a COMPASS.
    Epigenetics, 2013, Volume: 8, Issue:4

    Topics: Animals; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation; Microscopy, Electron; Multienzyme Complexes; Protein Conformation; Protein Multimerization; Protein Subunits; Saccharomyces cerevisiae Proteins

2013
SDG2-mediated H3K4 methylation is required for proper Arabidopsis root growth and development.
    PloS one, 2013, Volume: 8, Issue:2

    Topics: Arabidopsis; Arabidopsis Proteins; Chromatin Assembly and Disassembly; Chromatin Assembly Factor-1; Comet Assay; DNA Damage; Fluorescent Antibody Technique; Genomic Instability; Histones; Indoleacetic Acids; Lysine; Methylation; Methyltransferases; Microscopy, Confocal; Plant Roots

2013
Global histone modification of H3K27 correlates with the outcomes in patients with metachronous liver metastasis of colorectal cancer.
    European journal of surgical oncology : the journal of the European Society of Surgical Oncology and the British Association of Surgical Oncology, 2013, Volume: 39, Issue:6

    Topics: Adenocarcinoma; Adult; Aged; Colorectal Neoplasms; DNA Methylation; Enhancer of Zeste Homolog 2 Protein; Female; Gene Expression Regulation, Enzymologic; Gene Expression Regulation, Neoplastic; Histones; Humans; Immunohistochemistry; Kaplan-Meier Estimate; Liver Neoplasms; Lysine; Male; Methylation; Middle Aged; Multivariate Analysis; Neoplasms, Second Primary; Polycomb Repressive Complex 2; Prognosis; Retrospective Studies; Risk Factors; Tissue Array Analysis

2013
Regional control of histone H3 lysine 27 methylation in Neurospora.
    Proceedings of the National Academy of Sciences of the United States of America, 2013, Apr-09, Volume: 110, Issue:15

    Topics: Catalytic Domain; Cluster Analysis; Computational Biology; Epigenesis, Genetic; Gene Deletion; Gene Expression Regulation, Fungal; Genome, Fungal; Histones; Lysine; Markov Chains; Methylation; Neurospora; Sequence Analysis, DNA

2013
Inhibition of PRC2 activity by a gain-of-function H3 mutation found in pediatric glioblastoma.
    Science (New York, N.Y.), 2013, May-17, Volume: 340, Issue:6134

    Topics: Amino Acid Substitution; Animals; Brain Neoplasms; Child; Enhancer of Zeste Homolog 2 Protein; Epigenesis, Genetic; Glioblastoma; HEK293 Cells; Histones; Humans; Lysine; Methionine; Methylation; Mice; Mutation, Missense; Polycomb Repressive Complex 2; Transgenes

2013
Cancer-associated upregulation of histone H3 lysine 9 trimethylation promotes cell motility in vitro and drives tumor formation in vivo.
    Cancer science, 2013, Volume: 104, Issue:7

    Topics: Aged; Aged, 80 and over; Animals; Breast Neoplasms; Carcinogenesis; Cell Line, Tumor; Cell Movement; Colorectal Neoplasms; Epigenesis, Genetic; Female; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Histones; Humans; Lymph Nodes; Lymphatic Metastasis; Lysine; Male; Methylation; Methyltransferases; Mice; Mice, Inbred BALB C; Mice, Nude; Middle Aged; Neoplasm Invasiveness; Repressor Proteins; Up-Regulation

2013
Menin mediates epigenetic regulation via histone H3 lysine 9 methylation.
    Cell death & disease, 2013, Apr-11, Volume: 4

    Topics: Animals; Cell Transformation, Neoplastic; Chromatin Assembly and Disassembly; Epigenesis, Genetic; Fibroblasts; HEK293 Cells; Histones; Homeodomain Proteins; Humans; Lysine; Methylation; Methyltransferases; Mice; Mutation; Protein Transport; Proto-Oncogene Proteins; Repressor Proteins; Signal Transduction

2013
A general molecular affinity strategy for global detection and proteomic analysis of lysine methylation.
    Molecular cell, 2013, May-09, Volume: 50, Issue:3

    Topics: Animals; Cell Line; HEK293 Cells; Humans; Insecta; Lysine; Methylation; Protein Structure, Tertiary; Proteome; Proteomics; Sf9 Cells; Sirtuin 1

2013
Integration of genome-wide approaches identifies lncRNAs of adult neural stem cells and their progeny in vivo.
    Cell stem cell, 2013, May-02, Volume: 12, Issue:5

    Topics: Adult Stem Cells; Alternative Splicing; Animals; Cell Differentiation; Cell Lineage; Cerebral Ventricles; Embryonic Stem Cells; Gene Expression Regulation, Developmental; Genome; Histones; Humans; Lysine; Male; Methylation; Mice; Mice, Inbred C57BL; Neural Stem Cells; Neurogenesis; Neurons; Protein Isoforms; Protein Processing, Post-Translational; Reproducibility of Results; RNA, Long Noncoding; RNA, Messenger; Time Factors

2013
Single-molecule analysis of combinatorial epigenomic states in normal and tumor cells.
    Proceedings of the National Academy of Sciences of the United States of America, 2013, May-07, Volume: 110, Issue:19

    Topics: Animals; Cell Line; Cell Line, Tumor; Chromatin; Cytosine; Epigenesis, Genetic; Epigenomics; Fibroblasts; Gene Expression Regulation, Neoplastic; Gene Silencing; Histones; Humans; Lysine; Methylation; Mice; Protein Binding

2013
Max is a repressor of germ cell-related gene expression in mouse embryonic stem cells.
    Nature communications, 2013, Volume: 4

    Topics: Animals; Basic Helix-Loop-Helix Leucine Zipper Transcription Factors; Biomarkers; Cell Line; DEAD-box RNA Helicases; Embryonic Stem Cells; Flow Cytometry; Gene Expression Regulation, Developmental; Gene Knockdown Techniques; Genes, Reporter; Germ Cells; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Histones; Lysine; Meiosis; Methylation; Mice; Mice, Inbred C57BL; Oligonucleotide Array Sequence Analysis; Promoter Regions, Genetic; Protein Binding; Repressor Proteins; RNA Interference; Spermatogenesis; Time Factors; Up-Regulation

2013
BRCA1 is a negative modulator of the PRC2 complex.
    The EMBO journal, 2013, May-29, Volume: 32, Issue:11

    Topics: Animals; BRCA1 Protein; Cell Differentiation; Cell Line, Tumor; Cell Movement; Embryonic Stem Cells; Enhancer of Zeste Homolog 2 Protein; Female; Gene Expression Regulation, Neoplastic; Histones; Humans; Lysine; Methylation; Mice; Polycomb Repressive Complex 2; Protein Binding; RNA, Untranslated

2013
The dynamics of histone H3 modifications is species-specific in plant meiosis.
    Planta, 2013, Volume: 238, Issue:1

    Topics: Acetylation; Arabidopsis; Chromosomes, Plant; Heterochromatin; Histones; Lysine; Meiosis; Methylation; Mitosis; Phosphorylation; Plants; Poaceae; Secale; Serine; Species Specificity

2013
EMBRYONIC FLOWER1 and ULTRAPETALA1 Act Antagonistically on Arabidopsis Development and Stress Response.
    Plant physiology, 2013, Volume: 162, Issue:2

    Topics: Arabidopsis; Arabidopsis Proteins; Epigenesis, Genetic; Flowers; Gene Expression Regulation, Plant; Histones; Lysine; Methylation; Mutation; Phenotype; Plant Leaves; Plants, Genetically Modified; Seeds; Stress, Physiological; Transcription Factors

2013
Large-scale global identification of protein lysine methylation in vivo.
    Epigenetics, 2013, Volume: 8, Issue:5

    Topics: Antibodies; HeLa Cells; Humans; Lysine; Methylation; Protein Transport; Proteins; Subcellular Fractions

2013
Chromatin remodeling of human subtelomeres and TERRA promoters upon cellular senescence: commonalities and differences between chromosomes.
    Epigenetics, 2013, Volume: 8, Issue:5

    Topics: Biomarkers; Cellular Senescence; Chromatin Assembly and Disassembly; Chromosomes, Human; Euchromatin; Fibroblasts; Heterochromatin; Histones; Humans; Lysine; Methylation; Phenotype; Promoter Regions, Genetic; Repetitive Sequences, Nucleic Acid; RNA; Telomere; Telomere Shortening; Transcription, Genetic

2013
Lysine trimethylation of EF-Tu mimics platelet-activating factor to initiate Pseudomonas aeruginosa pneumonia.
    mBio, 2013, May-07, Volume: 4, Issue:3

    Topics: Adhesins, Bacterial; Animals; Bacterial Adhesion; Female; Lysine; Male; Methylation; Methyltransferases; Mice; Mice, Inbred BALB C; Peptide Elongation Factor Tu; Platelet Activating Factor; Pneumonia, Bacterial; Protein Processing, Post-Translational; Pseudomonas aeruginosa; Virulence Factors

2013
De novo mutations in histone-modifying genes in congenital heart disease.
    Nature, 2013, Jun-13, Volume: 498, Issue:7453

    Topics: Adult; Case-Control Studies; Child; Chromatin; DNA Mutational Analysis; Enhancer Elements, Genetic; Exome; Female; Genes, Developmental; Heart Diseases; Histones; Humans; Lysine; Male; Methylation; Mutation; Odds Ratio; Promoter Regions, Genetic

2013
ALKBH4-dependent demethylation of actin regulates actomyosin dynamics.
    Nature communications, 2013, Volume: 4

    Topics: Actins; Actomyosin; AlkB Homolog 4, Lysine Demethylase; Animals; Carboxy-Lyases; Cell Line; Cell Movement; Cytokinesis; Dioxygenases; Embryo Loss; Gene Deletion; Genetic Complementation Test; Humans; Lysine; Methylation; Mice; Models, Biological; Protein Binding

2013
Convergent evolution of chromatin modification by structurally distinct enzymes: comparative enzymology of histone H3 Lys²⁷ methylation by human polycomb repressive complex 2 and vSET.
    The Biochemical journal, 2013, Jul-15, Volume: 453, Issue:2

    Topics: Amino Acid Sequence; Biocatalysis; Chromatin; Histones; Humans; Lysine; Methylation; Methyltransferases; Molecular Sequence Data; Polycomb Repressive Complex 2; Protein Conformation; Sequence Homology, Amino Acid

2013
Genetic identification of a novel locus, ACCELERATED FLOWERING 1 that controls chromatin modification associated with histone H3 lysine 27 trimethylation in Arabidopsis thaliana.
    Plant science : an international journal of experimental plant biology, 2013, Volume: 208

    Topics: Arabidopsis; Arabidopsis Proteins; Chromatin; Epistasis, Genetic; Flowers; Gene Expression Regulation, Plant; Genes, Plant; Genetic Loci; Genetic Pleiotropy; Histones; Homeodomain Proteins; Lysine; Methylation; Mutation; Phenotype; Physical Chromosome Mapping

2013
Regulation of transcription of nucleotide-binding leucine-rich repeat-encoding genes SNC1 and RPP4 via H3K4 trimethylation.
    Plant physiology, 2013, Volume: 162, Issue:3

    Topics: Arabidopsis; Arabidopsis Proteins; Cloning, Molecular; Gene Expression Regulation, Plant; Histones; Leucine-Rich Repeat Proteins; Lysine; Methylation; Methyltransferases; Mutation; Nuclear Proteins; Oomycetes; Plants, Genetically Modified; Promoter Regions, Genetic; Proteins; Repetitive Sequences, Amino Acid

2013
Depleting the methyltransferase Suv39h1 improves DNA repair and extends lifespan in a progeria mouse model.
    Nature communications, 2013, Volume: 4

    Topics: Animals; Disease Models, Animal; DNA Damage; DNA Repair; Enzyme Stability; Fibroblasts; HEK293 Cells; Heterochromatin; Histones; Humans; Lamin Type A; Longevity; Lysine; Methylation; Methyltransferases; Mice; Nuclear Proteins; Progeria; Protein Binding; Protein Precursors; Protein Processing, Post-Translational; Repressor Proteins

2013
Dynamic methylation of Numb by Set8 regulates its binding to p53 and apoptosis.
    Molecular cell, 2013, May-23, Volume: 50, Issue:4

    Topics: Amino Acid Sequence; Antibiotics, Antineoplastic; Apoptosis; Binding Sites; Cell Line; Cell Line, Tumor; Doxorubicin; HeLa Cells; Histone-Lysine N-Methyltransferase; Humans; Immunoblotting; Lysine; MCF-7 Cells; Membrane Proteins; Methylation; Microscopy, Confocal; Mutation; Nerve Tissue Proteins; Protein Binding; RNA Interference; Signal Transduction; Tumor Suppressor Protein p53

2013
Multiple epigenetic mechanisms and the piRNA pathway enforce LINE1 silencing during adult spermatogenesis.
    Molecular cell, 2013, May-23, Volume: 50, Issue:4

    Topics: Age Factors; Animals; Argonaute Proteins; Blotting, Western; DNA Methylation; Epigenesis, Genetic; Gene Expression; Gene Silencing; Histones; Long Interspersed Nucleotide Elements; Lysine; Male; Methylation; Mice; Mice, Inbred C57BL; Mice, Knockout; Microscopy, Confocal; Mitosis; Reverse Transcriptase Polymerase Chain Reaction; RNA, Small Interfering; Signal Transduction; Spermatocytes; Spermatogenesis; Testis

2013
A method for systematic mapping of protein lysine methylation identifies functions for HP1β in DNA damage response.
    Molecular cell, 2013, Jun-06, Volume: 50, Issue:5

    Topics: Catalytic Domain; Chromobox Protein Homolog 5; Chromosomal Proteins, Non-Histone; DNA Breaks, Double-Stranded; DNA Damage; DNA-Activated Protein Kinase; High-Throughput Screening Assays; Humans; Lysine; Methylation; Mutation; Protein Processing, Post-Translational; Proteins; Reproducibility of Results

2013
KAT5 tyrosine phosphorylation couples chromatin sensing to ATM signalling.
    Nature, 2013, Jun-06, Volume: 498, Issue:7452

    Topics: Amino Acid Sequence; Animals; Ataxia Telangiectasia Mutated Proteins; Cell Cycle Checkpoints; Cell Cycle Proteins; Cell Line; Cell Survival; Chromatin; DNA Damage; DNA-Binding Proteins; Enzyme Activation; HeLa Cells; Histone Acetyltransferases; Histones; Humans; Lysine; Lysine Acetyltransferase 5; Methylation; Molecular Sequence Data; Phosphorylation; Phosphotyrosine; Protein Serine-Threonine Kinases; Proto-Oncogene Mas; Proto-Oncogene Proteins c-abl; Signal Transduction; Tumor Suppressor Proteins

2013
Kdm4b histone demethylase is a DNA damage response protein and confers a survival advantage following γ-irradiation.
    The Journal of biological chemistry, 2013, Jul-19, Volume: 288, Issue:29

    Topics: Animals; Ataxia Telangiectasia Mutated Proteins; Cell Line, Tumor; Cell Survival; DNA Breaks, Double-Stranded; DNA Damage; DNA Repair; DNA-Activated Protein Kinase; Fluorescence Recovery After Photobleaching; Gamma Rays; Green Fluorescent Proteins; Histones; Humans; Jumonji Domain-Containing Histone Demethylases; Lasers; Lysine; Methylation; Mice; Poly(ADP-ribose) Polymerases; Protein Transport; Recombinant Fusion Proteins

2013
Mass spectrometry-based identification and characterisation of lysine and arginine methylation in the human proteome.
    Molecular bioSystems, 2013, Volume: 9, Issue:9

    Topics: Arginine; Humans; Lysine; Mass Spectrometry; Methylation; Proteome; Proteomics

2013
The Tudor protein survival motor neuron (SMN) is a chromatin-binding protein that interacts with methylated lysine 79 of histone H3.
    Journal of cell science, 2013, Aug-15, Volume: 126, Issue:Pt 16

    Topics: Carrier Proteins; Centromere; Chromatin; HeLa Cells; Histones; Humans; Lysine; Methylation; Microscopy, Confocal; Nuclear Proteins; SMN Complex Proteins; Transfection

2013
Application of reductive ¹³C-methylation of lysines to enhance the sensitivity of conventional NMR methods.
    Molecules (Basel, Switzerland), 2013, Jun-18, Volume: 18, Issue:6

    Topics: Calmodulin; Carbon Isotopes; Humans; Lysine; Methylation; Models, Molecular; Nuclear Magnetic Resonance, Biomolecular; Oxidation-Reduction; Prenylation; Protein Binding; Protein Conformation; Proto-Oncogene Proteins p21(ras); Sensitivity and Specificity

2013
A small molecule modulates Jumonji histone demethylase activity and selectively inhibits cancer growth.
    Nature communications, 2013, Volume: 4

    Topics: Aminopyridines; Animals; Antineoplastic Agents; Cell Line, Tumor; Cell Proliferation; Cell Survival; Dose-Response Relationship, Drug; Drug Screening Assays, Antitumor; Enzyme Inhibitors; Epigenesis, Genetic; Histones; Humans; Hydrazones; Inhibitory Concentration 50; Isomerism; Jumonji Domain-Containing Histone Demethylases; Lysine; Methylation; Mice; Neoplasms; Small Molecule Libraries; Survival Analysis; Transcription, Genetic

2013
PHF20 regulates NF-κB signalling by disrupting recruitment of PP2A to p65.
    Nature communications, 2013, Volume: 4

    Topics: Antigens, Neoplasm; Biomarkers, Tumor; Brain Neoplasms; DNA-Binding Proteins; Glioma; HEK293 Cells; HeLa Cells; Humans; Immunohistochemistry; Lysine; Methylation; Models, Biological; Phosphorylation; Protein Binding; Protein Phosphatase 2; Signal Transduction; Transcription Factor RelA; Transcription Factors; Tumor Necrosis Factor-alpha

2013
Histone methylation at H3K9: evidence for a restrictive epigenome in schizophrenia.
    Schizophrenia research, 2013, Volume: 149, Issue:1-3

    Topics: Adult; Cerebral Cortex; Epigenomics; Female; Gene Expression Regulation; Histone-Lysine N-Methyltransferase; Histones; Humans; Linear Models; Lymphocytes; Lysine; Male; Methylation; Middle Aged; Postmortem Changes; Protein Methyltransferases; Psychiatric Status Rating Scales; RNA, Messenger; Schizophrenia

2013
MicroRNA-323-3p regulates the activity of polycomb repressive complex 2 (PRC2) via targeting the mRNA of embryonic ectoderm development (Eed) gene in mouse embryonic stem cells.
    The Journal of biological chemistry, 2013, Aug-16, Volume: 288, Issue:33

    Topics: 3' Untranslated Regions; Animals; Base Sequence; Embryo, Mammalian; Embryonic Stem Cells; Fibroblasts; Gene Expression Regulation, Developmental; Genes, Reporter; Hep G2 Cells; Histones; Humans; Induced Pluripotent Stem Cells; Luciferases; Lysine; Methylation; Mice; MicroRNAs; Molecular Sequence Data; Polycomb Repressive Complex 2; RNA, Messenger

2013
PfSETvs methylation of histone H3K36 represses virulence genes in Plasmodium falciparum.
    Nature, 2013, Jul-11, Volume: 499, Issue:7457

    Topics: DNA-Binding Proteins; Drosophila Proteins; Erythrocytes; Gene Silencing; Genes, Protozoan; Histones; Introns; Lysine; Malaria Vaccines; Methylation; Plasmodium falciparum; Promoter Regions, Genetic; Protozoan Proteins; RNA, Long Noncoding; Transcription Factors; Transcription Initiation Site; Virulence; Virulence Factors

2013
CpG islands under selective pressure are enriched with H3K4me3, H3K27ac and H3K36me3 histone modifications.
    BMC evolutionary biology, 2013, Jul-10, Volume: 13

    Topics: Acetylation; Cell Line; Chromatin; Computational Biology; CpG Islands; Epigenesis, Genetic; Evolution, Molecular; Histones; Humans; Lysine; Methylation; Promoter Regions, Genetic; Selection, Genetic

2013
Identification of methyllysine peptides binding to chromobox protein homolog 6 chromodomain in the human proteome.
    Molecular & cellular proteomics : MCP, 2013, Volume: 12, Issue:10

    Topics: Chromosomal Proteins, Non-Histone; Humans; Lysine; Methylation; Models, Molecular; Peptides; Protein Processing, Post-Translational; Protein Structure, Tertiary; Proteome

2013
Posttranslational modifications of the histone 3 tail and their impact on the activity of histone lysine demethylases in vitro.
    PloS one, 2013, Volume: 8, Issue:7

    Topics: Acetylation; Amino Acid Sequence; Enzyme Assays; Epigenesis, Genetic; Histone Demethylases; Histones; Humans; Kinetics; Lysine; Methylation; Molecular Docking Simulation; Molecular Dynamics Simulation; Molecular Sequence Data; Phosphorylation; Protein Processing, Post-Translational; Protein Structure, Tertiary; Recombinant Proteins; Signal Transduction; Substrate Specificity

2013
Spt6 prevents transcription-coupled loss of posttranslationally modified histone H3.
    Scientific reports, 2013, Volume: 3

    Topics: Acetylation; Cell Cycle Proteins; Gene Order; Heterochromatin; Histone Chaperones; Histone Deacetylases; Histones; Lysine; Methylation; Models, Biological; Molecular Sequence Data; Mutation; Nucleosomes; Protein Processing, Post-Translational; Schizosaccharomyces; Schizosaccharomyces pombe Proteins; Transcription, Genetic

2013
Chorion formation in panoistic ovaries requires windei and trimethylation of histone 3 lysine 9.
    Experimental cell research, 2014, Jan-01, Volume: 320, Issue:1

    Topics: Animals; Chorion; Cloning, Molecular; Cockroaches; Drosophila melanogaster; Drosophila Proteins; Female; Histones; Lysine; Methylation; Ovary

2014
Targeting H3K4 trimethylation in Huntington disease.
    Proceedings of the National Academy of Sciences of the United States of America, 2013, Aug-06, Volume: 110, Issue:32

    Topics: Animals; Animals, Genetically Modified; Blotting, Western; Brain; Brain-Derived Neurotrophic Factor; Cells, Cultured; Drosophila melanogaster; Female; Gene Expression Profiling; Histone Demethylases; Histones; Humans; Huntingtin Protein; Huntington Disease; Lysine; Male; Methylation; Mice; Mice, Inbred C57BL; Mice, Inbred CBA; Nerve Tissue Proteins; Neurons; Oxidoreductases, N-Demethylating; Promoter Regions, Genetic; Reverse Transcriptase Polymerase Chain Reaction; RNA Interference

2013
Systemic lupus erythematosus patients contain significantly less igm against mono-methylated lysine than healthy subjects.
    PloS one, 2013, Volume: 8, Issue:7

    Topics: Adolescent; Child; Child, Preschool; Female; Histones; Humans; Immunoglobulin G; Immunoglobulin M; Lupus Erythematosus, Systemic; Lysine; Male; Methylation

2013
Id2 complexes with the SNAG domain of Snai1 inhibiting Snai1-mediated repression of integrin β4.
    Molecular and cellular biology, 2013, Volume: 33, Issue:19

    Topics: Animals; Base Sequence; Binding Sites; Cadherins; Cell Line; Epithelial-Mesenchymal Transition; Gene Expression Profiling; Gene Expression Regulation; Histones; Humans; Inhibitor of Differentiation Protein 2; Integrin beta4; Lysine; MCF-7 Cells; Methylation; Mice; Molecular Sequence Data; Oligonucleotide Array Sequence Analysis; Promoter Regions, Genetic; Protein Binding; Reverse Transcriptase Polymerase Chain Reaction; RNA Interference; Sequence Homology, Nucleic Acid; Snail Family Transcription Factors; Transcription Factors; Transforming Growth Factor beta1

2013
The CaMV 35S enhancer has a function to change the histone modification state at insertion loci in Arabidopsis thaliana.
    Journal of plant research, 2013, Volume: 126, Issue:6

    Topics: Acetylation; Arabidopsis; Caulimovirus; Chromatin; Chromatin Immunoprecipitation; Enhancer Elements, Genetic; Epigenomics; Gene Expression Regulation, Plant; Gene Silencing; Genes, Reporter; Histones; Lysine; Methylation; Mutation; Plant Leaves; Plants, Genetically Modified

2013
Folate polyglutamylation is involved in chromatin silencing by maintaining global DNA methylation and histone H3K9 dimethylation in Arabidopsis.
    The Plant cell, 2013, Volume: 25, Issue:7

    Topics: Arabidopsis; Arabidopsis Proteins; Base Sequence; Chromatin; Chromosomes, Plant; DNA Methylation; DNA-Binding Proteins; Folic Acid; Gene Expression Regulation, Plant; Gene Silencing; Genetic Complementation Test; Histones; Immunoblotting; Kanamycin Kinase; Lysine; Methylation; Microscopy, Confocal; Molecular Sequence Data; Mutation; Nuclear Proteins; Peptide Synthases; Plants, Genetically Modified; Polyglutamic Acid; Promoter Regions, Genetic; Reverse Transcriptase Polymerase Chain Reaction; Transcription Factors

2013
Effects of lysine methylation on gramicidin A channel folding in lipid membranes.
    Biopolymers, 2013, Volume: 100, Issue:6

    Topics: Amino Acid Sequence; Gramicidin; Hydrogen Bonding; Lipid Bilayers; Lysine; Methylation

2013
BGDB: a database of bivalent genes.
    Database : the journal of biological databases and curation, 2013, Volume: 2013

    Topics: Animals; Chromosomes, Human; Databases, Genetic; Embryonic Stem Cells; Genes; Histones; Humans; Lysine; Methylation; Mice; Molecular Sequence Annotation; PubMed

2013
A dual role for SAGA-associated factor 29 (SGF29) in ER stress survival by coordination of both histone H3 acetylation and histone H3 lysine-4 trimethylation.
    PloS one, 2013, Volume: 8, Issue:7

    Topics: Acetylation; Acetyltransferases; Bone Neoplasms; Cell Line, Tumor; Cell Survival; Endoplasmic Reticulum Chaperone BiP; Endoplasmic Reticulum Stress; Gene Knockdown Techniques; Histones; Humans; Lysine; Methylation; Osteosarcoma; Promoter Regions, Genetic; Transcription Factor CHOP; Transcription, Genetic

2013
DNMT1 is regulated by ATP-citrate lyase and maintains methylation patterns during adipocyte differentiation.
    Molecular and cellular biology, 2013, Volume: 33, Issue:19

    Topics: 3T3-L1 Cells; Adipocytes; Animals; ATP Citrate (pro-S)-Lyase; Blotting, Western; Cell Differentiation; Cell Line; DNA (Cytosine-5-)-Methyltransferase 1; DNA (Cytosine-5-)-Methyltransferases; DNA Methylation; Gene Expression; HEK293 Cells; Histones; Humans; Lysine; Methylation; Mice; MicroRNAs; Mitosis; Reverse Transcriptase Polymerase Chain Reaction; RNA Interference

2013
Role of lysine methylation of NF-κB in differential gene regulation.
    Proceedings of the National Academy of Sciences of the United States of America, 2013, Aug-13, Volume: 110, Issue:33

    Topics: Blotting, Western; Chromatin Immunoprecipitation; Cytokines; DNA Primers; F-Box Proteins; Gene Expression Regulation; HEK293 Cells; Humans; Interleukin-1beta; Jumonji Domain-Containing Histone Demethylases; Lysine; Methylation; Microarray Analysis; Mutagenesis, Site-Directed; Mutation; NF-kappa B; Oxidoreductases, N-Demethylating; Real-Time Polymerase Chain Reaction; Reverse Transcriptase Polymerase Chain Reaction; Sequence Analysis, DNA

2013
PHD domain from human SHPRH.
    Journal of biomolecular NMR, 2013, Volume: 56, Issue:4

    Topics: Amino Acid Motifs; Amino Acid Sequence; Chromatin Assembly and Disassembly; DNA Helicases; Histones; Humans; Lysine; Methylation; Molecular Sequence Data; Nuclear Magnetic Resonance, Biomolecular; Protein Structure, Tertiary; Thermodynamics; Ubiquitin-Protein Ligases

2013
H4K20 methylation regulates quiescence and chromatin compaction.
    Molecular biology of the cell, 2013, Volume: 24, Issue:19

    Topics: Cell Cycle; Cell Proliferation; Chromatin; DNA Replication; Fibroblasts; Gene Knockdown Techniques; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation; Mitosis; Primary Cell Culture

2013
Tissue-specific epigenetic modifications in root apical meristem cells of Hordeum vulgare.
    PloS one, 2013, Volume: 8, Issue:7

    Topics: Acetylation; Cell Nucleus; Cytoplasm; DNA Methylation; Epigenesis, Genetic; Histones; Hordeum; Immunohistochemistry; Lysine; Meristem; Methylation; Microscopy, Confocal; Plant Epidermis; Plant Proteins; Plant Roots; Plant Vascular Bundle

2013
Telomeric repeats facilitate CENP-A(Cnp1) incorporation via telomere binding proteins.
    PloS one, 2013, Volume: 8, Issue:7

    Topics: Blotting, Western; Centromere; Chromatin; Chromosomal Proteins, Non-Histone; Chromosomes, Fungal; DNA, Ribosomal; Gene Expression Profiling; Gene Expression Regulation, Fungal; Heterochromatin; Histones; Lysine; Methylation; Repetitive Sequences, Nucleic Acid; Schizosaccharomyces; Schizosaccharomyces pombe Proteins; Telomere; Telomere-Binding Proteins

2013
Role of histone lysine methyltransferases SUV39H1 and SETDB1 in gliomagenesis: modulation of cell proliferation, migration, and colony formation.
    Neuromolecular medicine, 2014, Volume: 16, Issue:1

    Topics: Apoptosis; Astrocytoma; Biomarkers, Tumor; Brain Neoplasms; Cell Division; Cell Line, Tumor; Cell Movement; Enzyme Induction; Glioblastoma; Histone-Lysine N-Methyltransferase; Humans; Lysine; Methylation; Methyltransferases; Neoplasm Grading; Neoplasm Proteins; Protein Methyltransferases; Protein Processing, Post-Translational; Repressor Proteins; RNA Interference; RNA, Small Interfering; Tumor Stem Cell Assay; Up-Regulation

2014
Automethylation of protein arginine methyltransferase 8 (PRMT8) regulates activity by impeding S-adenosylmethionine sensitivity.
    The Journal of biological chemistry, 2013, Sep-27, Volume: 288, Issue:39

    Topics: Catalysis; HeLa Cells; Humans; Lysine; Membrane Proteins; Methylation; Mutagenesis, Site-Directed; Mutation; Phenylalanine; Protein Binding; Protein Processing, Post-Translational; Protein Structure, Tertiary; Protein-Arginine N-Methyltransferases; S-Adenosylmethionine

2013
The Tudor domain of the PHD finger protein 1 is a dual reader of lysine trimethylation at lysine 36 of histone H3 and lysine 27 of histone variant H3t.
    Journal of molecular biology, 2014, Apr-17, Volume: 426, Issue:8

    Topics: Amino Acid Sequence; Binding Sites; DNA-Binding Proteins; Genetic Variation; HEK293 Cells; Histones; Humans; Lysine; Methylation; Molecular Sequence Data; Mutagenesis, Site-Directed; Polycomb Repressive Complex 2; Polycomb-Group Proteins; Protein Binding; Protein Interaction Domains and Motifs; Recombinant Proteins; Sequence Homology, Amino Acid; Transcription Factors

2014
PINK1 regulates histone H3 trimethylation and gene expression by interaction with the polycomb protein EED/WAIT1.
    Proceedings of the National Academy of Sciences of the United States of America, 2013, Sep-03, Volume: 110, Issue:36

    Topics: Animals; Antineoplastic Agents; Binding Sites; Cell Differentiation; Cell Line, Tumor; Chlorocebus aethiops; COS Cells; Gene Expression Regulation; HEK293 Cells; Histones; Humans; Immunoblotting; Lysine; Methylation; Mitochondria; Neuroblastoma; Phosphorylation; Polycomb Repressive Complex 2; Protein Binding; Protein Kinases; Protein Transport; Reverse Transcriptase Polymerase Chain Reaction; RNA Interference; Tretinoin; Two-Hybrid System Techniques

2013
SUMOylation negatively modulates target gene occupancy of the KDM5B, a histone lysine demethylase.
    Epigenetics, 2013, Volume: 8, Issue:11

    Topics: Animals; Cell Line; Histones; Humans; Jumonji Domain-Containing Histone Demethylases; Lysine; Methylation; Mice; Neoplasm Proteins; Nuclear Proteins; Protein Processing, Post-Translational; Repressor Proteins; Small Ubiquitin-Related Modifier Proteins; Sumoylation

2013
Investigation of lysine side chain interactions of interleukin-8 with heparin and other glycosaminoglycans studied by a methylation-NMR approach.
    Glycobiology, 2013, Volume: 23, Issue:11

    Topics: Amino Acid Substitution; Animals; Chlorocebus aethiops; COS Cells; Glycosaminoglycans; Heparin; Interleukin-8; Lysine; Magnetic Resonance Spectroscopy; Methylation; Molecular Dynamics Simulation; Oxidation-Reduction; Protein Binding; Receptors, Interleukin-8A; Signal Transduction; Solutions

2013
Functional specificity of CpG DNA-binding CXXC domains in mixed lineage leukemia.
    The Journal of biological chemistry, 2013, Oct-11, Volume: 288, Issue:41

    Topics: Amino Acid Sequence; Animals; Binding Sites; Cell Line; Cells, Cultured; Chromatin Immunoprecipitation; CpG Islands; DNA; DNA (Cytosine-5-)-Methyltransferase 1; DNA (Cytosine-5-)-Methyltransferases; DNA Methylation; DNA-Binding Proteins; Histone-Lysine N-Methyltransferase; Histones; Homeodomain Proteins; Humans; Leukemia, Experimental; Lysine; Methylation; Mice; Molecular Sequence Data; Myeloid-Lymphoid Leukemia Protein; Oncogene Proteins, Fusion; Protein Binding; Sequence Homology, Amino Acid; Transcription Factors

2013
Substrate-induced transcriptional activation of the MoCel7C cellulase gene is associated with methylation of histone H3 at lysine 4 in the rice blast fungus Magnaporthe oryzae.
    Applied and environmental microbiology, 2013, Volume: 79, Issue:21

    Topics: Base Sequence; Blotting, Western; Cellulase; Chromatin Immunoprecipitation; DNA Primers; Gene Knockout Techniques; Genes, Fungal; Genetic Vectors; Green Fluorescent Proteins; Histones; Lysine; Magnaporthe; Methylation; Molecular Sequence Data; Real-Time Polymerase Chain Reaction; Sequence Analysis, DNA; Transcriptional Activation

2013
[Identification of methylation at lysine 27 and 36 sites in histone H3].
    Se pu = Chinese journal of chromatography, 2013, Volume: 31, Issue:6

    Topics: Chromatography, Liquid; Histones; Lysine; Methylation; Tandem Mass Spectrometry

2013
N-alpha-terminal acetylation of histone H4 regulates arginine methylation and ribosomal DNA silencing.
    PLoS genetics, 2013, Volume: 9, Issue:9

    Topics: Acetylation; Acetyltransferases; Arginine; Chromatin; DNA, Ribosomal; Gene Silencing; Histones; Lysine; Methylation; Mutation; Protein Processing, Post-Translational; Saccharomyces cerevisiae; Substrate Specificity

2013
Modulation of lysine methylation in myocyte enhancer factor 2 during skeletal muscle cell differentiation.
    Nucleic acids research, 2014, Volume: 42, Issue:1

    Topics: Animals; Cell Differentiation; Cell Line; Chromatin; HEK293 Cells; Histone Demethylases; Histone-Lysine N-Methyltransferase; Humans; Lysine; MEF2 Transcription Factors; Methylation; Mice; Myoblasts, Skeletal; Oxidoreductases, N-Demethylating; Protein Processing, Post-Translational; Transcription, Genetic

2014
The signal transducers Stat1 and Stat3 and their novel target Jmjd3 drive the expression of inflammatory genes in microglia.
    Journal of molecular medicine (Berlin, Germany), 2014, Volume: 92, Issue:3

    Topics: Animals; Cells, Cultured; Chromatin Immunoprecipitation; Cytokines; Gene Expression Regulation; Gene Silencing; Histones; Inflammation; Jumonji Domain-Containing Histone Demethylases; Lipopolysaccharides; Lysine; Methylation; Microglia; Phosphorylation; Polymerase Chain Reaction; Promoter Regions, Genetic; Rats; Rats, Wistar; STAT1 Transcription Factor; STAT3 Transcription Factor

2014
Regulation of estrogen receptor α by histone methyltransferase SMYD2-mediated protein methylation.
    Proceedings of the National Academy of Sciences of the United States of America, 2013, Oct-22, Volume: 110, Issue:43

    Topics: Acetylation; Amino Acid Sequence; Blotting, Western; Cell Line, Tumor; Chromatin; Estradiol; Estrogen Receptor alpha; Estrogens; Gene Expression Regulation, Neoplastic; Histone Demethylases; Histone-Lysine N-Methyltransferase; Humans; Lysine; MCF-7 Cells; Methylation; Mutation; p300-CBP Transcription Factors; Reverse Transcriptase Polymerase Chain Reaction; RNA Interference; Sequence Homology, Amino Acid

2013
Dynamics of DOT1L localization and H3K79 methylation during meiotic prophase I in mouse spermatocytes.
    Chromosoma, 2014, Volume: 123, Issue:1-2

    Topics: Animals; Cell Nucleus; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Male; Meiotic Prophase I; Methylation; Methyltransferases; Mice; Mice, Inbred C57BL; Models, Biological; Mutation; Protein Transport; Sex Chromosomes; Spermatocytes; Time Factors

2014
EZH2 and KDM6A act as an epigenetic switch to regulate mesenchymal stem cell lineage specification.
    Stem cells (Dayton, Ohio), 2014, Volume: 32, Issue:3

    Topics: Adipocytes; Adipogenesis; Adolescent; Adult; Animals; Cell Lineage; Cells, Cultured; Enhancer of Zeste Homolog 2 Protein; Epigenesis, Genetic; Gene Expression Regulation; Gene Knockdown Techniques; Histone Demethylases; Histones; Humans; Lysine; Mesenchymal Stem Cells; Methylation; Mice; Mice, SCID; Nuclear Proteins; Osteoblasts; Osteogenesis; Polycomb Repressive Complex 2; Promoter Regions, Genetic; Transcription, Genetic; Young Adult

2014
Immunoaffinity enrichment and mass spectrometry analysis of protein methylation.
    Molecular & cellular proteomics : MCP, 2014, Volume: 13, Issue:1

    Topics: Amino Acid Motifs; Animals; Arginine; Brain; Chromatography, Liquid; HCT116 Cells; Humans; Lysine; Methylation; Mice; Protein Processing, Post-Translational; Tandem Mass Spectrometry

2014
Negative regulation of interferon-induced transmembrane protein 3 by SET7-mediated lysine monomethylation.
    The Journal of biological chemistry, 2013, Dec-06, Volume: 288, Issue:49

    Topics: Amino Acid Sequence; Animals; Cell Line; Chlorocebus aethiops; Gene Knockdown Techniques; HEK293 Cells; Histone-Lysine N-Methyltransferase; Humans; Influenza A virus; Interferon Type I; Lysine; Membrane Proteins; Methylation; Molecular Sequence Data; Protein Processing, Post-Translational; RNA-Binding Proteins; Signal Transduction; Vero Cells; Vesiculovirus; Virus Diseases

2013
H3K4 demethylase activities repress proliferative and postmitotic aging.
    Aging cell, 2014, Volume: 13, Issue:2

    Topics: Animals; Caenorhabditis elegans; Caenorhabditis elegans Proteins; Cell Proliferation; Cellular Senescence; Fertility; Germ Cells; Heterozygote; Histone Demethylases; Histones; Longevity; Lysine; Methylation; Mitosis; Mutation; Phenotype; Retinoblastoma-Binding Protein 2; Temperature

2014
Epigenetic upregulation of CCL2 and CCL3 via histone modifications in infiltrating macrophages after peripheral nerve injury.
    Cytokine, 2013, Volume: 64, Issue:3

    Topics: Acetylation; Animals; Bone Marrow Transplantation; Chemokine CCL2; Chemokine CCL3; Epigenesis, Genetic; Histones; Immunohistochemistry; Lysine; Macrophages; Male; Methylation; Mice; Mice, Inbred C57BL; Mice, Inbred ICR; Mice, Transgenic; Neuralgia; Peripheral Nerve Injuries; Receptors, CCR1; Receptors, CCR2; Receptors, CCR5; Reverse Transcriptase Polymerase Chain Reaction; Sciatic Nerve; Time Factors; Up-Regulation

2013
The effect of N-acetylation and N-methylation of lysine residue of Tat peptide on its interaction with HIV-1 TAR RNA.
    PloS one, 2013, Volume: 8, Issue:10

    Topics: Acetylation; Amino Acid Sequence; Base Sequence; Circular Dichroism; HIV Long Terminal Repeat; HIV-1; Humans; Kinetics; Lysine; Methylation; Peptides; Protein Binding; RNA, Viral; tat Gene Products, Human Immunodeficiency Virus; Thermodynamics

2013
High-resolution Xist binding maps reveal two-step spreading during X-chromosome inactivation.
    Nature, 2013, Dec-19, Volume: 504, Issue:7480

    Topics: Animals; Chromatin; Embryonic Stem Cells; Female; Fibroblasts; Gene Silencing; Genes; Histone-Lysine N-Methyltransferase; Histones; Lysine; Methylation; Mice; Models, Genetic; RNA, Long Noncoding; X Chromosome; X Chromosome Inactivation

2013
In situ histone landscape of nephrogenesis.
    Epigenetics, 2014, Volume: 9, Issue:2

    Topics: Animals; Arginine; Cell Differentiation; Chromatin; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Histones; Kidney; Lysine; Methylation; Mice; Nephrons; Organogenesis; Stem Cells

2014
LSD1 regulates pluripotency of embryonic stem/carcinoma cells through histone deacetylase 1-mediated deacetylation of histone H4 at lysine 16.
    Molecular and cellular biology, 2014, Volume: 34, Issue:2

    Topics: Acetylation; Animals; Cell Proliferation; Co-Repressor Proteins; Embryonal Carcinoma Stem Cells; Embryonic Stem Cells; Epigenesis, Genetic; G1 Phase Cell Cycle Checkpoints; Gene Expression; HCT116 Cells; HeLa Cells; Histone Acetyltransferases; Histone Deacetylase 1; Histone Demethylases; Histones; Humans; Lysine; Methylation; Mice; Nerve Tissue Proteins; NIH 3T3 Cells; Octamer Transcription Factor-3; Protein Processing, Post-Translational; Repressor Proteins; Sirtuin 1; SOXB1 Transcription Factors

2014
Latrunculin A treatment prevents abnormal chromosome segregation for successful development of cloned embryos.
    PloS one, 2013, Volume: 8, Issue:10

    Topics: Actins; Animals; Azepines; Bridged Bicyclo Compounds, Heterocyclic; Chromosome Segregation; Cloning, Organism; Embryo, Mammalian; Embryonic Development; Epigenesis, Genetic; Female; Fertilization in Vitro; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Histones; Lysine; Methylation; Mice; Mice, Inbred C57BL; Mice, Inbred DBA; Nuclear Transfer Techniques; Oocytes; Quinazolines; Thiazolidines

2013
Automethylation activities within the mixed lineage leukemia-1 (MLL1) core complex reveal evidence supporting a "two-active site" model for multiple histone H3 lysine 4 methylation.
    The Journal of biological chemistry, 2014, Jan-10, Volume: 289, Issue:2

    Topics: Amino Acid Substitution; Animals; Binding Sites; Cysteine; DNA-Binding Proteins; Electrophoresis, Polyacrylamide Gel; Histone-Lysine N-Methyltransferase; Histones; Humans; Intracellular Signaling Peptides and Proteins; Kinetics; Lysine; Mass Spectrometry; Methylation; Models, Molecular; Mutation; Myeloid-Lymphoid Leukemia Protein; Nuclear Proteins; Protein Structure, Tertiary; Transcription Factors

2014
Ash1l methylates Lys36 of histone H3 independently of transcriptional elongation to counteract polycomb silencing.
    PLoS genetics, 2013, Volume: 9, Issue:11

    Topics: Animals; Chromatin; Dichlororibofuranosylbenzimidazole; DNA-Binding Proteins; Drosophila melanogaster; Drosophila Proteins; Gene Silencing; Histone Acetyltransferases; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation; Nuclear Proteins; Polycomb-Group Proteins; Positive Transcriptional Elongation Factor B; RNA Polymerase II; Transcription Factors; Transcription, Genetic; Transcriptional Elongation Factors

2013
Mammalian protein arginine methyltransferase 7 (PRMT7) specifically targets RXR sites in lysine- and arginine-rich regions.
    The Journal of biological chemistry, 2013, Dec-27, Volume: 288, Issue:52

    Topics: Amino Acid Motifs; Animals; Arginine; Histones; Humans; Lysine; Methylation; Mice; Protein Processing, Post-Translational; Protein-Arginine N-Methyltransferases; Recombinant Proteins; Sf9 Cells; Spodoptera; Substrate Specificity

2013
Mammary-specific gene activation is defined by progressive recruitment of STAT5 during pregnancy and the establishment of H3K4me3 marks.
    Molecular and cellular biology, 2014, Volume: 34, Issue:3

    Topics: Animals; Animals, Newborn; Chromatin; Epithelium; Female; Gene Expression Regulation, Developmental; Gene Ontology; Histones; Lysine; Mammary Glands, Animal; Methylation; Mice; Oligonucleotide Array Sequence Analysis; Phosphorylation; Pregnancy; Promoter Regions, Genetic; Protein Binding; STAT5 Transcription Factor; Transcriptional Activation; Transcriptome

2014
Jumonji C domain protein JMJ705-mediated removal of histone H3 lysine 27 trimethylation is involved in defense-related gene activation in rice.
    The Plant cell, 2013, Volume: 25, Issue:11

    Topics: Gene Expression Regulation, Plant; Histones; Jumonji Domain-Containing Histone Demethylases; Lysine; Methylation; Oryza; Plants, Genetically Modified; Xanthomonas

2013
Lysine methylation promotes VEGFR-2 activation and angiogenesis.
    Science signaling, 2013, Dec-03, Volume: 6, Issue:304

    Topics: Animals; Cell Line, Tumor; HEK293 Cells; Heterografts; Humans; Lysine; Methylation; Mice; Neoplasm Proteins; Neoplasm Transplantation; Neoplasms; Neovascularization, Pathologic; Protein Processing, Post-Translational; Vascular Endothelial Growth Factor Receptor-2; Zebrafish; Zebrafish Proteins

2013
Proteome-wide enrichment of proteins modified by lysine methylation.
    Nature protocols, 2014, Volume: 9, Issue:1

    Topics: Chromatography, Liquid; Escherichia coli; Lysine; Methylation; Proteins; Proteomics; Tandem Mass Spectrometry

2014
A novel microscopy-based high-throughput screening method to identify proteins that regulate global histone modification levels.
    Journal of biomolecular screening, 2014, Volume: 19, Issue:2

    Topics: Cell Line; Chromatin; Epigenesis, Genetic; High-Throughput Screening Assays; Histones; Humans; Lysine; Methylation; Microscopy; Protein Binding; Protein Processing, Post-Translational; Proteins

2014
Hairless is a histone H3K9 demethylase.
    FASEB journal : official publication of the Federation of American Societies for Experimental Biology, 2014, Volume: 28, Issue:4

    Topics: Basic Helix-Loop-Helix Transcription Factors; Binding Sites; Blotting, Western; Caspase 14; Cells, Cultured; Chromatin Immunoprecipitation; Gene Expression Regulation; HEK293 Cells; HeLa Cells; Histone Demethylases; Histones; Humans; Jumonji Domain-Containing Histone Demethylases; Lysine; Methylation; Models, Molecular; Mutation; Promoter Regions, Genetic; Protein Structure, Tertiary; Reverse Transcriptase Polymerase Chain Reaction; Sequence Analysis, DNA; Transcription Factors; Tumor Suppressor Proteins

2014
ChIP-seq analysis of histone H3K9 trimethylation in peripheral blood mononuclear cells of membranous nephropathy patients.
    Brazilian journal of medical and biological research = Revista brasileira de pesquisas medicas e biologicas, 2014, Volume: 47, Issue:1

    Topics: Adult; Case-Control Studies; Chromatin Immunoprecipitation; Female; Glomerulonephritis, Membranous; Histones; Humans; Leukocytes, Mononuclear; Lysine; Male; Methylation

2014
PPARβ interprets a chromatin signature of pluripotency to promote embryonic differentiation at gastrulation.
    PloS one, 2013, Volume: 8, Issue:12

    Topics: Animals; Base Sequence; Blastula; Cell Differentiation; Chromatin; Epigenesis, Genetic; Gastrulation; Gene Knockdown Techniques; Histones; Lysine; Methylation; PPAR-beta; RNA, Messenger; Transcriptome; Xenopus laevis

2013
An epigenetic profile of early T-cell development from multipotent progenitors to committed T-cell descendants.
    European journal of immunology, 2014, Volume: 44, Issue:4

    Topics: Animals; Cell Differentiation; Cell Lineage; Cells, Cultured; Cluster Analysis; Epigenesis, Genetic; Epigenomics; Hematopoietic Stem Cells; Histones; Lysine; Methylation; Mice; Mice, Inbred BALB C; Mice, Inbred C57BL; Mice, Knockout; Multipotent Stem Cells; Oligonucleotide Array Sequence Analysis; Precursor Cells, T-Lymphoid; T-Lymphocytes

2014
Quantitative proteomics reveals histone modifications in crosstalk with H3 lysine 27 methylation.
    Molecular & cellular proteomics : MCP, 2014, Volume: 13, Issue:3

    Topics: Acetylation; DNA Damage; DNA, Ribosomal; Electrophoresis, Polyacrylamide Gel; Epigenesis, Genetic; Histones; Lysine; Methylation; Mutation; Protein Processing, Post-Translational; Protein Structure, Tertiary; Proteomics; Protozoan Proteins; Reproducibility of Results; Stress, Physiological; Tetrahymena

2014
Context dependency of Set1/COMPASS-mediated histone H3 Lys4 trimethylation.
    Genes & development, 2014, Jan-15, Volume: 28, Issue:2

    Topics: Histone-Lysine N-Methyltransferase; Histones; Lysine; Membrane Proteins; Methylation; Phosphoric Monoester Hydrolases; Protein Stability; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins

2014
Substrate specificity analysis and novel substrates of the protein lysine methyltransferase NSD1.
    Chemistry & biology, 2014, Feb-20, Volume: 21, Issue:2

    Topics: Amino Acid Sequence; HEK293 Cells; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Histones; Humans; Intracellular Signaling Peptides and Proteins; Lysine; Methylation; Nuclear Proteins; Peptides; Protein Structure, Tertiary; Recombinant Fusion Proteins; Substrate Specificity

2014
Lysine methylation of progesterone receptor at activation function 1 regulates both ligand-independent activity and ligand sensitivity of the receptor.
    The Journal of biological chemistry, 2014, Feb-28, Volume: 289, Issue:9

    Topics: Amino Acid Substitution; Animals; Chlorocebus aethiops; COS Cells; Humans; Ligands; Lysine; Methylation; Mutation, Missense; Nuclear Receptor Co-Repressor 1; Phosphorylation; Protein Isoforms; Receptors, Progesterone

2014
Mll2 is required for H3K4 trimethylation on bivalent promoters in embryonic stem cells, whereas Mll1 is redundant.
    Development (Cambridge, England), 2014, Volume: 141, Issue:3

    Topics: Animals; Binding Sites; Cell Differentiation; Chromosomes, Artificial, Bacterial; Embryonic Stem Cells; Gene Expression Profiling; Gene Expression Regulation, Developmental; Genome; Histone-Lysine N-Methyltransferase; Histones; Homeodomain Proteins; Lysine; Methylation; Mice; Models, Biological; Myeloid-Lymphoid Leukemia Protein; Promoter Regions, Genetic; Protein Binding; Transgenes; Tretinoin

2014
On form and function: does chromatin packing regulate the cell cycle?
    Physiological genomics, 2014, Mar-15, Volume: 46, Issue:6

    Topics: Cell Cycle; Cell Proliferation; Chromatin; Epigenesis, Genetic; Fibroblasts; Gene Expression; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation; Models, Genetic; RNA Interference; Signal Transduction

2014
The lysine-specific demethylase 1 is a novel substrate of protein kinase CK2.
    Biochimica et biophysica acta, 2014, Volume: 1844, Issue:4

    Topics: Amino Acid Sequence; Animals; Casein Kinase II; Cell Line, Tumor; Drosophila melanogaster; Epigenesis, Genetic; Escherichia coli; Histone Demethylases; Histones; Humans; Lysine; Methylation; Molecular Sequence Data; Mutation; Neurons; Phosphorylation; Protein Structure, Tertiary; Protein Subunits; Recombinant Proteins; Serine; Signal Transduction

2014
The methyltransferase WBSCR22/Merm1 enhances glucocorticoid receptor function and is regulated in lung inflammation and cancer.
    The Journal of biological chemistry, 2014, Mar-28, Volume: 289, Issue:13

    Topics: B-Lymphocytes; Bronchi; CD8-Positive T-Lymphocytes; Cell Line, Tumor; Chromatin Assembly and Disassembly; Epithelium; Gene Expression Regulation, Neoplastic; Glucocorticoids; Histones; Humans; Inflammation; Interferon-gamma; Lung Neoplasms; Lysine; Methylation; Methyltransferases; Protein Binding; Protein Kinases; Protein Structure, Tertiary; Receptors, Glucocorticoid; RNA, Messenger; Signal Transduction; Transcriptional Activation; Tumor Necrosis Factor-alpha; Ubiquitination

2014
Broad shifts in gene expression during early postnatal life are associated with shifts in histone methylation patterns.
    PloS one, 2014, Volume: 9, Issue:1

    Topics: Aging; Animals; Animals, Newborn; Cell Cycle; Cell Differentiation; Chromatin Immunoprecipitation; Gene Expression Profiling; Gene Expression Regulation, Developmental; Gene Ontology; Histones; Kidney; Lung; Lysine; Male; Methylation; Mice, Inbred C57BL; Neurons; Protein Processing, Post-Translational; Reproducibility of Results; Reverse Transcriptase Polymerase Chain Reaction; Time Factors

2014
Multimethylation of Rickettsia OmpB catalyzed by lysine methyltransferases.
    The Journal of biological chemistry, 2014, Mar-14, Volume: 289, Issue:11

    Topics: Amino Acid Motifs; Bacterial Outer Membrane Proteins; Cell Membrane; Chromatography, Liquid; Kinetics; Lysine; Methylation; Methyltransferases; Plasmids; Protein Structure, Tertiary; Rickettsia prowazekii; Rickettsia typhi; Tandem Mass Spectrometry; Virulence

2014
Loss of histone H3 methylation at lysine 4 triggers apoptosis in Saccharomyces cerevisiae.
    PLoS genetics, 2014, Volume: 10, Issue:1

    Topics: Apoptosis; Cell Survival; DNA Damage; Histone-Lysine N-Methyltransferase; Histones; Jumonji Domain-Containing Histone Demethylases; Lysine; Methylation; Nuclear Proteins; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins; Ubiquitination

2014
Arsenite induces premature senescence via p53/p21 pathway as a result of DNA damage in human malignant glioblastoma cells.
    BMB reports, 2014, Volume: 47, Issue:10

    Topics: Arsenites; Cell Line, Tumor; Cell Proliferation; Cell Survival; Cellular Senescence; Cyclin-Dependent Kinase Inhibitor p21; DNA Damage; Glioblastoma; Histones; Humans; Lysine; Methylation; Signal Transduction; Tumor Suppressor Protein p53

2014
Tomato GOLDEN2-LIKE transcription factors reveal molecular gradients that function during fruit development and ripening.
    The Plant cell, 2014, Volume: 26, Issue:2

    Topics: Carotenoids; Chlorophyll; Chloroplasts; Ethylenes; Fruit; Gene Expression Profiling; Gene Expression Regulation, Developmental; Gene Expression Regulation, Plant; Genes, Plant; Histones; Lysine; Methylation; Mutation; Organ Specificity; Phenotype; Photosynthesis; Plant Leaves; Plant Proteins; Plants, Genetically Modified; Solanum lycopersicum; Transcription Factors

2014
Stoichiometry of Saccharomyces cerevisiae lysine methylation: insights into non-histone protein lysine methyltransferase activity.
    Journal of proteome research, 2014, Mar-07, Volume: 13, Issue:3

    Topics: Amino Acid Sequence; Lysine; Methylation; Methyltransferases; Molecular Sequence Data; Peptide Elongation Factor 1; Peptide Elongation Factor 2; Protein Processing, Post-Translational; Ribosomal Proteins; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins

2014
Protein methylation and interaction with the antiproliferative gene, BTG2/TIS21/Pc3.
    Yonsei medical journal, 2014, Volume: 55, Issue:2

    Topics: Animals; Apoptosis; Arginine; Biochemistry; Cell Differentiation; DNA Damage; History, 20th Century; Humans; Immediate-Early Proteins; Lysine; Methylation; Neurites; Protein-Arginine N-Methyltransferases; Proteins; Repressor Proteins; Tumor Suppressor Proteins

2014
Identification and characterization of lysine-methylated sites on histones and non-histone proteins.
    Computational biology and chemistry, 2014, Volume: 50

    Topics: Animals; Databases, Protein; Humans; Lysine; Methylation; Mice; Protein Processing, Post-Translational; Proteins; Support Vector Machine

2014
Histone H3K9 and H3K27 methylation regulates fungal alkaloid biosynthesis in a fungal endophyte-plant symbiosis.
    Molecular microbiology, 2014, Volume: 92, Issue:2

    Topics: Alkaloids; Chromatin Immunoprecipitation; DNA, Fungal; Endophytes; Epichloe; Gene Deletion; Gene Expression Profiling; Gene Expression Regulation, Fungal; Histones; Lolium; Lysine; Methylation; Methyltransferases; Molecular Sequence Data; Protein Processing, Post-Translational; Real-Time Polymerase Chain Reaction; Sequence Analysis, DNA; Symbiosis; Transcription, Genetic

2014
Inhibition of histone binding by supramolecular hosts.
    The Biochemical journal, 2014, May-01, Volume: 459, Issue:3

    Topics: Autoantigens; Calixarenes; Chromatin Assembly and Disassembly; Chromosomal Proteins, Non-Histone; Drug Design; Epigenesis, Genetic; HEK293 Cells; Histones; Homeodomain Proteins; Humans; Hypoxia-Inducible Factor-Proline Dioxygenases; Indicators and Reagents; Lysine; Methylation; Mi-2 Nucleosome Remodeling and Deacetylase Complex; Models, Molecular; Peptide Fragments; Protein Interaction Domains and Motifs; Protein Processing, Post-Translational; Protein Subunits; Recombinant Proteins

2014
Statistical mechanics model for the dynamics of collective epigenetic histone modification.
    Physical review letters, 2014, Feb-14, Volume: 112, Issue:6

    Topics: Epigenomics; Histones; Lysine; Methylation; Models, Genetic; Models, Statistical; Nucleosomes; Octamer Transcription Factor-3; Stochastic Processes; Thermodynamics

2014
ZMYND11 links histone H3.3K36me3 to transcription elongation and tumour suppression.
    Nature, 2014, Apr-10, Volume: 508, Issue:7495

    Topics: Amino Acid Sequence; Animals; Breast Neoplasms; Carrier Proteins; Cell Cycle Proteins; Chromatin; Co-Repressor Proteins; Crystallography, X-Ray; Disease-Free Survival; DNA-Binding Proteins; Female; Gene Expression Regulation, Neoplastic; Histones; Humans; Lysine; Methylation; Mice; Mice, Nude; Models, Molecular; Molecular Sequence Data; Oncogenes; Prognosis; Protein Binding; Protein Conformation; Protein Structure, Tertiary; RNA Polymerase II; Substrate Specificity; Transcription Elongation, Genetic

2014
Structural insights into estrogen receptor α methylation by histone methyltransferase SMYD2, a cellular event implicated in estrogen signaling regulation.
    Journal of molecular biology, 2014, Oct-09, Volume: 426, Issue:20

    Topics: Amino Acid Sequence; Binding Sites; Crystallography, X-Ray; Electrophoresis, Polyacrylamide Gel; Estrogen Receptor alpha; Estrogens; Ethylene Glycol; Histone-Lysine N-Methyltransferase; Humans; Lysine; Methylation; Models, Molecular; Mutation; Protein Binding; Protein Structure, Tertiary; Sequence Homology, Amino Acid; Signal Transduction; Substrate Specificity

2014
Concurrent activation of acetylation and tri-methylation of H3K27 in a subset of hepatocellular carcinoma with aggressive behavior.
    PloS one, 2014, Volume: 9, Issue:3

    Topics: Acetylation; beta Catenin; Carcinoma, Hepatocellular; Fluorescent Antibody Technique; Hepatectomy; Histones; Humans; Kaplan-Meier Estimate; Liver Neoplasms; Lysine; Methylation; Multivariate Analysis; Neoplasm Invasiveness; Treatment Outcome; Tumor Suppressor Protein p53

2014
Lysine methylation mapping of crenarchaeal DNA-directed RNA polymerases by collision-induced and electron-transfer dissociation mass spectrometry.
    Journal of proteome research, 2014, May-02, Volume: 13, Issue:5

    Topics: Acetylation; Amino Acid Sequence; Archaeal Proteins; Binding Sites; Chromatography, Liquid; DNA-Directed RNA Polymerases; Electron Transport; Electrophoresis, Polyacrylamide Gel; Lysine; Mass Spectrometry; Methylation; Molecular Sequence Data; Protein Subunits; Sequence Homology, Amino Acid; Species Specificity; Sulfolobus; Sulfolobus acidocaldarius

2014
Histone H3 lysine 4 trimethylation regulates cotranscriptional H2A variant exchange by Tip60 complexes to maximize gene expression.
    Proceedings of the National Academy of Sciences of the United States of America, 2014, Apr-01, Volume: 111, Issue:13

    Topics: Acetylation; Animals; DNA Polymerase II; DNA-Binding Proteins; Drosophila melanogaster; Drosophila Proteins; Gene Expression Regulation; Genetic Loci; Heat Shock Transcription Factors; Histone Acetyltransferases; Histone-Lysine N-Methyltransferase; Histones; HSP70 Heat-Shock Proteins; Lysine; Methylation; Models, Biological; Multiprotein Complexes; Nucleosomes; Promoter Regions, Genetic; Protein Binding; RNA, Messenger; Transcription Factors; Transcription Initiation Site; Transcription, Genetic; Transcriptional Activation

2014
The localization of histone H3K27me3 demethylase Jmjd3 is dynamically regulated.
    Epigenetics, 2014, Volume: 9, Issue:6

    Topics: Active Transport, Cell Nucleus; Animals; Catalytic Domain; Cell Nucleus; Cells, Cultured; Fatty Acids, Unsaturated; Histones; Humans; Jumonji Domain-Containing Histone Demethylases; Karyopherins; Lysine; Methylation; Mice; Nuclear Localization Signals

2014
Arabidopsis guard cell integrity involves the epigenetic stabilization of the FLP and FAMA transcription factor genes.
    The Plant journal : for cell and molecular biology, 2014, Volume: 78, Issue:4

    Topics: Arabidopsis; Arabidopsis Proteins; Basic Helix-Loop-Helix Transcription Factors; Cell Lineage; Epigenesis, Genetic; Gene Expression Regulation, Plant; Green Fluorescent Proteins; Histones; Homeodomain Proteins; Lysine; Methylation; Microscopy, Confocal; Phenotype; Plant Stomata; Plants, Genetically Modified; Reverse Transcriptase Polymerase Chain Reaction; Stem Cells; Transcription Factors

2014
Acetylation of histone H3 at lysine 64 regulates nucleosome dynamics and facilitates transcription.
    eLife, 2014, Mar-25, Volume: 3

    Topics: Acetylation; Animals; Chromatin Assembly and Disassembly; Embryonic Stem Cells; Histones; Humans; Kinetics; Lysine; Male; Methylation; Mice; Neural Stem Cells; NIH 3T3 Cells; Nucleic Acid Conformation; Nucleosomes; p300-CBP Transcription Factors; Protein Conformation; Protein Processing, Post-Translational; Protein Stability; Transcription, Genetic; Transcriptional Activation; Transfection; Xenopus laevis; Xenopus Proteins

2014
Uncoupling transcription from covalent histone modification.
    PLoS genetics, 2014, Volume: 10, Issue:4

    Topics: Acetylation; Heterochromatin; Histones; HSP90 Heat-Shock Proteins; Lysine; Methylation; Nucleosomes; Promoter Regions, Genetic; RNA Polymerase II; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins; Transcription, Genetic; Transcriptional Activation

2014
The histone methyltransferase SMYD2 methylates PARP1 and promotes poly(ADP-ribosyl)ation activity in cancer cells.
    Neoplasia (New York, N.Y.), 2014, Volume: 16, Issue:3

    Topics: Amino Acid Sequence; DNA Damage; HeLa Cells; Histone-Lysine N-Methyltransferase; Humans; Hydrogen Peroxide; Lysine; Methylation; Molecular Sequence Data; Poly (ADP-Ribose) Polymerase-1; Poly Adenosine Diphosphate Ribose; Poly(ADP-ribose) Polymerases; Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization

2014
CtBP and associated LSD1 are required for transcriptional activation by NeuroD1 in gastrointestinal endocrine cells.
    Molecular and cellular biology, 2014, Volume: 34, Issue:12

    Topics: Acetylation; Alcohol Oxidoreductases; Animals; Basic Helix-Loop-Helix Transcription Factors; Cell Line; DNA-Binding Proteins; Enteroendocrine Cells; Histone Demethylases; Histones; Humans; Lysine; Methylation; Models, Biological; Nerve Tissue Proteins; p300-CBP Transcription Factors; Promoter Regions, Genetic; Protein Binding; Secretin; Transcription Factors; Transcription, Genetic; Transcriptional Activation

2014
Domains of genome-wide gene expression dysregulation in Down's syndrome.
    Nature, 2014, Apr-17, Volume: 508, Issue:7496

    Topics: Animals; Cells, Cultured; Chromatin; Chromosomes, Human, Pair 21; Chromosomes, Mammalian; DNA Replication Timing; Down Syndrome; Female; Fetus; Fibroblasts; Gene Expression Regulation; Genome; Histones; Humans; Induced Pluripotent Stem Cells; Lysine; Male; Methylation; Mice; Transcriptome; Twins, Monozygotic

2014
Transcriptional regulation of the albumin gene depends on the removal of histone methylation marks by the FAD-dependent monoamine oxidase lysine-specific demethylase 1 in HepG2 human hepatocarcinoma cells.
    The Journal of nutrition, 2014, Volume: 144, Issue:7

    Topics: Biomarkers; Epigenetic Repression; Flavin-Adenine Dinucleotide; Glutathione; Glutathione Reductase; Hep G2 Cells; Hepatocytes; Histone Demethylases; Histones; Humans; Lysine; Methylation; Monoamine Oxidase; Osmolar Concentration; Promoter Regions, Genetic; Protein Processing, Post-Translational; Riboflavin; RNA, Messenger; Serum Albumin; Serum Albumin, Human; Transcriptional Activation

2014
Gene-specific methylation control of H3K9 and H3K36 on neurotrophic BDNF versus astroglial GFAP genes by KDM4A/C regulates neural stem cell differentiation.
    Journal of molecular biology, 2014, Oct-09, Volume: 426, Issue:20

    Topics: Animals; Astrocytes; Brain-Derived Neurotrophic Factor; Cell Differentiation; Cells, Cultured; Gene Expression Regulation; Glial Fibrillary Acidic Protein; Histones; Immunoblotting; Jumonji Domain-Containing Histone Demethylases; Lysine; Methylation; Mice; Microscopy, Fluorescence; Neural Stem Cells; Promoter Regions, Genetic; Rats; Reverse Transcriptase Polymerase Chain Reaction; RNA Interference; RNA Polymerase II

2014
Triplication of a 21q22 region contributes to B cell transformation through HMGN1 overexpression and loss of histone H3 Lys27 trimethylation.
    Nature genetics, 2014, Volume: 46, Issue:6

    Topics: Animals; B-Lymphocytes; Bone Marrow Transplantation; Cell Proliferation; Chromosomes, Human, Pair 21; DNA Methylation; Female; Fusion Proteins, bcr-abl; Gene Duplication; Histones; HMGN1 Protein; Humans; Lysine; Male; Methylation; Mice; Mice, Inbred C57BL; Nucleosomes; Phenotype; Promoter Regions, Genetic

2014
Uncovering the protein lysine and arginine methylation network in Arabidopsis chloroplasts.
    PloS one, 2014, Volume: 9, Issue:4

    Topics: Amino Acid Motifs; Arabidopsis; Arabidopsis Proteins; Arginine; Chloroplasts; Databases, Protein; Intracellular Space; Lysine; Mass Spectrometry; Methylation; Methyltransferases; Models, Molecular; Protein Conformation; Protein Transport; Recombinant Proteins

2014
The histone methyltransferase ESET is required for the survival of spermatogonial stem/progenitor cells in mice.
    Cell death & disease, 2014, Apr-24, Volume: 5

    Topics: Animals; Apoptosis; Cell Survival; Cells, Cultured; DNA Methylation; Electron Transport Complex IV; Fluorescent Antibody Technique; Histone-Lysine N-Methyltransferase; Histones; Lysine; Male; Methylation; Mice, Inbred C57BL; Models, Biological; Phenotype; RNA Interference; Spermatogonia; Stem Cell Transplantation; Stem Cells; Testis; Transduction, Genetic

2014
Quiescence-induced LncRNAs trigger H4K20 trimethylation and transcriptional silencing.
    Molecular cell, 2014, May-22, Volume: 54, Issue:4

    Topics: Animals; Cell Proliferation; Chromatin; Gene Expression Regulation; Gene Silencing; Genes, Intracisternal A-Particle; Genes, rRNA; Genetic Loci; Histone-Lysine N-Methyltransferase; Histones; Lysine; Methylation; Mice; NIH 3T3 Cells; RNA, Long Noncoding; Telomere

2014
The relationship between lysine 4 on histone H3 methylation levels of alcohol tolerance genes and changes of ethanol tolerance in Saccharomyces cerevisiae.
    Microbial biotechnology, 2014, Volume: 7, Issue:4

    Topics: Culture Media; Drug Tolerance; Epigenesis, Genetic; Ethanol; Gene Expression Profiling; Gene Expression Regulation, Fungal; Histones; Lysine; Methylation; Protein Processing, Post-Translational; Saccharomyces cerevisiae; Serial Passage

2014
A role for WDR5 in integrating threonine 11 phosphorylation to lysine 4 methylation on histone H3 during androgen signaling and in prostate cancer.
    Molecular cell, 2014, May-22, Volume: 54, Issue:4

    Topics: Androgens; Cell Line, Tumor; Cell Proliferation; Chromatin; Epigenesis, Genetic; Gene Expression Regulation, Neoplastic; Gene Knockdown Techniques; HeLa Cells; Histone-Lysine N-Methyltransferase; Histones; Humans; Intracellular Signaling Peptides and Proteins; Lysine; Male; Methylation; Myeloid-Lymphoid Leukemia Protein; Phosphorylation; Prostatic Neoplasms; Protein Kinase C; Receptors, Androgen; Signal Transduction; Threonine

2014
Human UTY(KDM6C) is a male-specific Nϵ-methyl lysyl demethylase.
    The Journal of biological chemistry, 2014, Jun-27, Volume: 289, Issue:26

    Topics: Amino Acid Sequence; Crystallography, X-Ray; Histones; Humans; Lysine; Male; Methylation; Minor Histocompatibility Antigens; Models, Molecular; Molecular Sequence Data; Nuclear Proteins; Protein Structure, Tertiary; Sequence Alignment; Species Specificity

2014
A transgenic mouse model demonstrating the oncogenic role of mutations in the polycomb-group gene EZH2 in lymphomagenesis.
    Blood, 2014, Jun-19, Volume: 123, Issue:25

    Topics: Animals; B-Lymphocytes; Blotting, Western; Bone Marrow Cells; Cell Proliferation; Cell Transformation, Neoplastic; Disease Models, Animal; Female; Flow Cytometry; Gene Expression Profiling; Histones; Humans; Kaplan-Meier Estimate; Lymphoma; Lymphoma, B-Cell; Lysine; Male; Methylation; Mice; Mice, Inbred C57BL; Mice, Transgenic; Mutation; Polycomb Repressive Complex 2; Proto-Oncogene Proteins c-myc; Spleen

2014
Imprinting in rice: the role of DNA and histone methylation in modulating parent-of-origin specific expression and determining transcript start sites.
    The Plant journal : for cell and molecular biology, 2014, Volume: 79, Issue:2

    Topics: Genomic Imprinting; Histones; Lysine; Methylation; Oryza; Promoter Regions, Genetic

2014
A region of euchromatin coincides with an extensive tandem repeat on the mouse (Mus musculus) inactive X chromosome.
    Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology, 2014, Volume: 22, Issue:3

    Topics: Animals; Chromosomes, Mammalian; Euchromatin; Female; Heterochromatin; Histones; Humans; Lysine; Male; Methylation; Mice; Mice, Inbred C57BL; NIH 3T3 Cells; Short Interspersed Nucleotide Elements; Species Specificity; Tandem Repeat Sequences; X Chromosome; X Chromosome Inactivation; Y Chromosome

2014
Multiplexed parallel reaction monitoring targeting histone modifications on the QExactive mass spectrometer.
    Analytical chemistry, 2014, Jun-03, Volume: 86, Issue:11

    Topics: Acetylation; Histones; Lysine; Mass Spectrometry; Methylation; Peptides; Propionates; Trypsin

2014
Site-specific human histone H3 methylation stability: fast K4me3 turnover.
    Proteomics, 2014, Volume: 14, Issue:19

    Topics: Chromatin; Gene Expression Regulation; HeLa Cells; Histones; Humans; Isotope Labeling; Lysine; Methylation; Protein Stability

2014
Histone methyltransferase G9a and H3K9 dimethylation inhibit the self-renewal of glioma cancer stem cells.
    Molecular and cellular biochemistry, 2014, Volume: 394, Issue:1-2

    Topics: AC133 Antigen; Antigens, CD; Azepines; Brain Neoplasms; Cell Line, Tumor; Cell Proliferation; Enzyme Inhibitors; Gene Expression Regulation, Neoplastic; Glioma; Glycoproteins; Histocompatibility Antigens; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation; Neoplastic Stem Cells; Peptides; Promoter Regions, Genetic; Quinazolines; Signal Transduction; SOXB1 Transcription Factors; Transfection

2014
Histone lysine methyltransferase SDG8 is involved in brassinosteroid-regulated gene expression in Arabidopsis thaliana.
    Molecular plant, 2014, Volume: 7, Issue:8

    Topics: Arabidopsis; Arabidopsis Proteins; Brassinosteroids; DNA-Binding Proteins; Gene Expression Regulation, Plant; Gene Knockout Techniques; Genomics; Histone-Lysine N-Methyltransferase; Histones; Lysine; Methylation; Mutation; Nuclear Proteins; Phenotype; Protein Transport; Signal Transduction; Transcription Factors

2014
SMYD3 links lysine methylation of MAP3K2 to Ras-driven cancer.
    Nature, 2014, Jun-12, Volume: 510, Issue:7504

    Topics: Adenocarcinoma; Adenocarcinoma of Lung; Animals; Cell Line, Tumor; Cell Transformation, Neoplastic; Disease Models, Animal; Histone-Lysine N-Methyltransferase; Humans; Lung Neoplasms; Lysine; MAP Kinase Kinase Kinase 2; MAP Kinase Kinase Kinases; Methylation; Mice; Mitogen-Activated Protein Kinases; Oncogene Protein p21(ras); Pancreatic Neoplasms; Protein Phosphatase 2; Proto-Oncogene Proteins A-raf; Signal Transduction

2014
Genome-wide quantitative analysis of histone H3 lysine 4 trimethylation in wild house mouse liver: environmental change causes epigenetic plasticity.
    PloS one, 2014, Volume: 9, Issue:5

    Topics: Animals; Animals, Wild; Epigenesis, Genetic; Female; Genomics; Histones; Liver; Lysine; Male; Methylation; Mice; Protein Stability

2014
Chromatin organisation in duckweed interphase nuclei in relation to the nuclear DNA content.
    Plant biology (Stuttgart, Germany), 2015, Volume: 17 Suppl 1

    Topics: Arabidopsis; Araceae; Chromatin; DNA, Plant; Epigenesis, Genetic; Euchromatin; Heterochromatin; Histones; Interphase; Lysine; Methylation; Phylogeny; Species Specificity

2015
Lysine methylation is an endogenous post-translational modification of tau protein in human brain and a modulator of aggregation propensity.
    The Biochemical journal, 2014, Aug-15, Volume: 462, Issue:1

    Topics: Amino Acid Sequence; Humans; Lysine; Male; Methylation; Microtubules; Middle Aged; Phosphorylation; Protein Processing, Post-Translational; Protein Structure, Quaternary; Tandem Mass Spectrometry; tau Proteins; Tubulin

2014
RLIM is dispensable for X-chromosome inactivation in the mouse embryonic epiblast.
    Nature, 2014, Jul-03, Volume: 511, Issue:7507

    Topics: Animals; Down-Regulation; Embryo Implantation; Embryo, Mammalian; Female; Germ Layers; Histones; In Situ Hybridization, Fluorescence; Lysine; Methylation; Mice; Mice, Knockout; RNA, Long Noncoding; Ubiquitin-Protein Ligases; X Chromosome Inactivation

2014
Lysine-specific demethylase 1-mediated demethylation of histone H3 lysine 9 contributes to interleukin 1β-induced microsomal prostaglandin E synthase 1 expression in human osteoarthritic chondrocytes.
    Arthritis research & therapy, 2014, May-16, Volume: 16, Issue:3

    Topics: Adult; Aged; Aged, 80 and over; Blotting, Western; Cells, Cultured; Chondrocytes; Gene Expression; Histone Demethylases; Histones; Humans; Interleukin-1beta; Intramolecular Oxidoreductases; Lysine; Methylation; Middle Aged; Monoamine Oxidase Inhibitors; Osteoarthritis; Pargyline; Promoter Regions, Genetic; Prostaglandin-E Synthases; Protein Binding; Reverse Transcriptase Polymerase Chain Reaction; RNA Interference; Tranylcypromine

2014
EZH2 represses target genes through H3K27-dependent and H3K27-independent mechanisms in hepatocellular carcinoma.
    Molecular cancer research : MCR, 2014, Volume: 12, Issue:10

    Topics: Animals; Carcinoma, Hepatocellular; Cell Movement; Cell Proliferation; Enhancer of Zeste Homolog 2 Protein; Gene Expression Regulation, Neoplastic; Gene Knockdown Techniques; Histones; Humans; Liver Neoplasms; Lysine; Methylation; Mice, Nude; Polycomb Repressive Complex 2; Repressor Proteins; Signal Transduction; Transcription, Genetic; Tumor Suppressor Protein p53; Xenograft Model Antitumor Assays

2014
Changes in histone H3 lysine 36 methylation in porcine oocytes and preimplantation embryos.
    PloS one, 2014, Volume: 9, Issue:6

    Topics: Animals; Blastocyst; Cells, Cultured; Cloning, Organism; Embryonic Development; Female; Fertilization in Vitro; Gene Expression Regulation, Developmental; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Histones; Lysine; Methylation; Nuclear Transfer Techniques; Oocytes; Parthenogenesis; Pregnancy; Protein Processing, Post-Translational; Swine

2014
DNA double-strand breaks promote methylation of histone H3 on lysine 9 and transient formation of repressive chromatin.
    Proceedings of the National Academy of Sciences of the United States of America, 2014, Jun-24, Volume: 111, Issue:25

    Topics: Ataxia Telangiectasia Mutated Proteins; Chromatin; Chromatin Assembly and Disassembly; DNA Breaks, Double-Stranded; HEK293 Cells; HeLa Cells; Histone Acetyltransferases; Histones; Humans; Lysine; Lysine Acetyltransferase 5; Methylation; Methyltransferases; Phosphorylation; Protein Structure, Tertiary; Repressor Proteins; Tripartite Motif-Containing Protein 28

2014
The polycomb group protein EZH2 inhibits lung cancer cell growth by repressing the transcription factor Nrf2.
    FEBS letters, 2014, Aug-25, Volume: 588, Issue:17

    Topics: Carcinoma, Non-Small-Cell Lung; Cell Line, Tumor; Cell Proliferation; Disease Progression; Enhancer of Zeste Homolog 2 Protein; Epigenesis, Genetic; Female; Histones; Humans; Lung Neoplasms; Lysine; Male; Methylation; Middle Aged; NF-E2-Related Factor 2; Polycomb Repressive Complex 2; Survival Analysis

2014
One-pot native chemical ligation of peptide hydrazides enables total synthesis of modified histones.
    Organic & biomolecular chemistry, 2014, Aug-07, Volume: 12, Issue:29

    Topics: Amino Acid Sequence; Chemistry, Organic; Histones; Hydrazines; Lysine; Mass Spectrometry; Methylation; Molecular Sequence Data; Peptides; Protein Multimerization; Protein Processing, Post-Translational

2014
The PHD1 finger of KDM5B recognizes unmodified H3K4 during the demethylation of histone H3K4me2/3 by KDM5B.
    Protein & cell, 2014, Volume: 5, Issue:11

    Topics: Binding Sites; Crystallography, X-Ray; Gene Expression Regulation; HEK293 Cells; Histones; Humans; Jumonji Domain-Containing Histone Demethylases; Lysine; Magnetic Resonance Spectroscopy; Methylation; Microscopy, Fluorescence; Models, Molecular; Mutation; Nuclear Proteins; Peptides; Protein Binding; Protein Structure, Tertiary; Repressor Proteins

2014
[Effects of ceruloplasmin/PTEN on histone modifications induced by silica].
    Wei sheng yan jiu = Journal of hygiene research, 2014, Volume: 43, Issue:3

    Topics: Acetylation; Ceruloplasmin; Fibroblasts; Histones; Humans; Lysine; Methylation; Oxidation-Reduction; Proteins; PTEN Phosphohydrolase; Silicon Dioxide

2014
A scintillation proximity assay for histone demethylases.
    Analytical biochemistry, 2014, Oct-15, Volume: 463

    Topics: Enzyme Assays; Enzyme Inhibitors; Histone Demethylases; Humans; Jumonji Domain-Containing Histone Demethylases; Kinetics; Lysine; Methylation; Protein Binding; Protein Methyltransferases

2014
Human METTL20 methylates lysine residues adjacent to the recognition loop of the electron transfer flavoprotein in mitochondria.
    The Journal of biological chemistry, 2014, Aug-29, Volume: 289, Issue:35

    Topics: Amino Acid Sequence; Base Sequence; Cell Line, Tumor; Chromatography, Affinity; DNA Primers; Electron Transport; Flavoproteins; Humans; Lysine; Mass Spectrometry; Methylation; Methyltransferases; Mitochondria; Molecular Sequence Data

2014
Lysine methylation-dependent binding of 53BP1 to the pRb tumor suppressor.
    Proceedings of the National Academy of Sciences of the United States of America, 2014, Aug-05, Volume: 111, Issue:31

    Topics: Animals; Binding Sites; Cell Line, Tumor; Cellular Senescence; Chromatin; Chromosomal Proteins, Non-Histone; DNA Repair; DNA-Binding Proteins; Humans; Intracellular Signaling Peptides and Proteins; Lysine; Methylation; Mice; Models, Molecular; Peptides; Protein Binding; Protein Structure, Tertiary; Retinoblastoma Protein; Tumor Suppressor p53-Binding Protein 1

2014
Changes in histone methylation and acetylation during microspore reprogramming to embryogenesis occur concomitantly with Bn HKMT and Bn HAT expression and are associated with cell totipotency, proliferation, and differentiation in Brassica napus.
    Cytogenetic and genome research, 2014, Volume: 143, Issue:1-3

    Topics: Acetylation; Brassica napus; Cell Differentiation; Cell Proliferation; Haploidy; Histone Acetyltransferases; Histone-Lysine N-Methyltransferase; Histones; Lysine; Methylation; Pollen; Seeds; Totipotent Stem Cells

2014
EZH2-induced H3K27me3 is associated with epigenetic repression of the ARHI tumor-suppressor gene in ovarian cancer.
    Cell biochemistry and biophysics, 2015, Volume: 71, Issue:1

    Topics: Adenosine; Carcinogenesis; Carcinoma, Ovarian Epithelial; Cell Line, Tumor; Cell Proliferation; Enhancer of Zeste Homolog 2 Protein; Epigenetic Repression; Female; Gene Knockdown Techniques; Histones; Humans; Lysine; Methylation; Neoplasms, Glandular and Epithelial; Ovarian Neoplasms; Polycomb Repressive Complex 2; rho GTP-Binding Proteins; RNA, Small Interfering; Survival Analysis; Tumor Suppressor Proteins

2015
Elongation factor methyltransferase 3--a novel eukaryotic lysine methyltransferase.
    Biochemical and biophysical research communications, 2014, Aug-22, Volume: 451, Issue:2

    Topics: Amino Acid Sequence; Gene Knockout Techniques; Genes, Fungal; Humans; Lysine; Methylation; Methyltransferases; Models, Molecular; Molecular Sequence Data; Peptide Elongation Factor 2; Peptide Fragments; Protein Conformation; Recombinant Proteins; Ribosome Subunits, Small, Eukaryotic; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins; Sequence Homology, Amino Acid; Structural Homology, Protein; Substrate Specificity

2014
Histone h4 modification during mouse spermatogenesis.
    The Journal of reproduction and development, 2014, Volume: 60, Issue:5

    Topics: Acetylation; Animals; Arginine; Histones; Immunohistochemistry; Lysine; Male; Meiosis; Methylation; Mice; Mice, Inbred C57BL; Spermatogenesis

2014
Matrix softness regulates plasticity of tumour-repopulating cells via H3K9 demethylation and Sox2 expression.
    Nature communications, 2014, Aug-06, Volume: 5

    Topics: Animals; Biosensing Techniques; Cell Line, Tumor; Cell Proliferation; Disease Progression; DNA Methylation; Female; Fibrin; Fluorescence Resonance Energy Transfer; Gene Silencing; Histone-Lysine N-Methyltransferase; Histones; Integrin beta1; Lysine; Melanoma; Melanoma, Experimental; Methylation; Mice; Mice, Inbred C57BL; Neoplasm Metastasis; Neoplasm Transplantation; Neoplastic Stem Cells; Promoter Regions, Genetic; RNA, Small Interfering; Skin Neoplasms; SOXB1 Transcription Factors; Time Factors

2014
Jarid2 is induced by TCR signalling and controls iNKT cell maturation.
    Nature communications, 2014, Aug-08, Volume: 5

    Topics: Animals; Antigens, CD; Antigens, Differentiation, T-Lymphocyte; Bone Marrow Cells; CD4-Positive T-Lymphocytes; CD8-Positive T-Lymphocytes; Cell Differentiation; Cell Separation; Female; Flow Cytometry; Histones; Interleukin-4; Killer Cells, Natural; Kruppel-Like Transcription Factors; Lectins, C-Type; Lysine; Male; Methylation; Mice; Mice, Inbred C57BL; Mice, Transgenic; MicroRNAs; Polycomb Repressive Complex 2; Promoter Regions, Genetic; Promyelocytic Leukemia Zinc Finger Protein; Receptors, Antigen, T-Cell; Signal Transduction; Thymus Gland; Up-Regulation; Zinc Fingers

2014
The gene silencing transcription factor REST represses miR-132 expression in hippocampal neurons destined to die.
    Journal of molecular biology, 2014, Oct-09, Volume: 426, Issue:20

    Topics: Animals; Blotting, Western; CA1 Region, Hippocampal; Cell Death; Gene Expression Regulation; HEK293 Cells; Histones; Humans; Ischemia; Lysine; Male; Methylation; MicroRNAs; Neurons; Primary Cell Culture; Promoter Regions, Genetic; Rats, Sprague-Dawley; Repressor Proteins; Reverse Transcriptase Polymerase Chain Reaction; RNA Interference

2014
Transdifferentiation. Sequential histone-modifying activities determine the robustness of transdifferentiation.
    Science (New York, N.Y.), 2014, Aug-15, Volume: 345, Issue:6198

    Topics: Amino Acid Sequence; Animals; Animals, Genetically Modified; Caenorhabditis elegans; Caenorhabditis elegans Proteins; Cell Dedifferentiation; Cell Nucleus; Cell Transdifferentiation; Digestive System; Histone Demethylases; Histone-Lysine N-Methyltransferase; Histones; Lysine; Methylation; Models, Biological; Molecular Sequence Data; Motor Neurons; Transcription Factors

2014
Inhibition of H3K4me2 Demethylation Protects Auditory Hair Cells from Neomycin-Induced Apoptosis.
    Molecular neurobiology, 2015, Volume: 52, Issue:1

    Topics: Aminoglycosides; Animals; Apoptosis; Benzamidines; Caspase 3; Cyclopropanes; Cytoprotection; Disease Models, Animal; Hair Cells, Auditory; Histone Demethylases; Histones; Lysine; Methylation; Mice, Inbred C57BL; Neomycin; Organ of Corti; Phenyl Ethers; Piperazines

2015
Contrasting roles of histone 3 lysine 27 demethylases in acute lymphoblastic leukaemia.
    Nature, 2014, Oct-23, Volume: 514, Issue:7523

    Topics: Animals; Benzazepines; Epigenesis, Genetic; Histone Demethylases; Histones; Jumonji Domain-Containing Histone Demethylases; Lysine; Methylation; Mice; Precursor Cell Lymphoblastic Leukemia-Lymphoma; Pyrimidines; Tumor Suppressor Proteins

2014
Polycomb protein EED is required for silencing of pluripotency genes upon ESC differentiation.
    Stem cell reviews and reports, 2015, Volume: 11, Issue:1

    Topics: Animals; Blotting, Western; Cell Differentiation; Cell Line; Cells, Cultured; Embryoid Bodies; Embryonic Stem Cells; Gene Expression Profiling; Histones; Homeodomain Proteins; Lysine; Methylation; Mice, Knockout; Microscopy, Fluorescence; Nanog Homeobox Protein; Octamer Transcription Factor-3; Polycomb Repressive Complex 2; Promoter Regions, Genetic; Protein Binding; Reverse Transcriptase Polymerase Chain Reaction; RNA Interference; SOXB1 Transcription Factors

2015
Traceless semisynthesis of a set of histone 3 species bearing specific lysine methylation marks.
    Chembiochem : a European journal of chemical biology, 2014, Sep-22, Volume: 15, Issue:14

    Topics: Amino Acid Sequence; HeLa Cells; Histones; Humans; Lysine; Methylation; Molecular Sequence Data; Nucleosomes; Protein Binding; Protein Processing, Post-Translational

2014
Histone H3 lysine-to-methionine mutants as a paradigm to study chromatin signaling.
    Science (New York, N.Y.), 2014, Aug-29, Volume: 345, Issue:6200

    Topics: Amino Acid Substitution; Animals; Chromatin; Disease Models, Animal; Drosophila melanogaster; Drosophila Proteins; Gene Silencing; Glioma; Heterochromatin; Histone-Lysine N-Methyltransferase; Histones; Jumonji Domain-Containing Histone Demethylases; Lysine; Methionine; Methylation; Mutation; Signal Transduction

2014
Acetyltransferase p300/CBP associated Factor (PCAF) regulates crosstalk-dependent acetylation of histone H3 by distal site recognition.
    ACS chemical biology, 2015, Jan-16, Volume: 10, Issue:1

    Topics: Acetylation; Arginine; Binding Sites; Epigenesis, Genetic; Escherichia coli; Histones; Humans; Kinetics; Lysine; Methylation; Models, Molecular; Nucleosomes; p300-CBP Transcription Factors; Peptide Library; Plasmids; Protein Processing, Post-Translational; Recombinant Proteins; Substrate Specificity

2015
PHD finger protein 2 (PHF2) represses ribosomal RNA gene transcription by antagonizing PHF finger protein 8 (PHF8) and recruiting methyltransferase SUV39H1.
    The Journal of biological chemistry, 2014, Oct-24, Volume: 289, Issue:43

    Topics: Cell Nucleolus; Genes, rRNA; HEK293 Cells; HeLa Cells; Histone Demethylases; Histones; Homeodomain Proteins; Humans; Kruppel-Like Factor 4; Lysine; Methylation; Methyltransferases; Models, Biological; Promoter Regions, Genetic; Protein Binding; Protein Structure, Tertiary; Protein Transport; Repressor Proteins; Transcription Factors; Transcription, Genetic

2014
Developmental enhancers are marked independently of zygotic Nodal signals in Xenopus.
    Developmental biology, 2014, Nov-01, Volume: 395, Issue:1

    Topics: Acylation; Animals; Base Sequence; Benzamides; Blastula; Dioxoles; Enhancer Elements, Genetic; Gastrula; Gene Expression Regulation, Developmental; Histones; Lysine; Methylation; Molecular Sequence Data; Nodal Protein; Oligonucleotide Array Sequence Analysis; Sequence Homology, Nucleic Acid; Signal Transduction; Smad2 Protein; Smad3 Protein; Time Factors; Xenopus; Xenopus Proteins; Zygote

2014
Association of H3K9me3 and H3K27me3 repressive histone marks with breast cancer subtypes in the Nurses' Health Study.
    Breast cancer research and treatment, 2014, Volume: 147, Issue:3

    Topics: Adult; Breast Neoplasms; Epidemiologic Studies; Estrogen Receptor alpha; Female; Histones; Humans; Life Style; Lysine; Methylation; Middle Aged; Multivariate Analysis; Receptor, ErbB-2; Receptors, Progesterone; Reproductive History; Risk Factors; United States

2014
Resveratrol affects histone 3 lysine 27 methylation of vessels and blood biomarkers in DOCA salt-induced hypertension.
    Molecular biology reports, 2015, Volume: 42, Issue:1

    Topics: Animals; Antioxidants; Arginine; Biomarkers; Blood Pressure; Blood Vessels; Desoxycorticosterone Acetate; Endothelium, Vascular; Fluorescent Antibody Technique; Histones; Hydrogen Sulfide; Hypertension; Lysine; Male; Methylation; Nitrites; Rats, Wistar; Renal Artery; Resveratrol; Stilbenes; Systole; Vasodilation

2015
Molecular dynamics for computational proteomics of methylated histone H3.
    Biochimica et biophysica acta, 2015, Volume: 1850, Issue:5

    Topics: Animals; Binding Sites; Energy Transfer; Histones; Humans; Lysine; Methylation; Molecular Dynamics Simulation; Protein Binding; Protein Interaction Mapping; Protein Processing, Post-Translational; Protein Structure, Tertiary; Proteomics; Reproducibility of Results; Transcription Factors

2015
A natural antisense transcript regulates acetylcholinesterase gene expression via epigenetic modification in Hepatocellular Carcinoma.
    The international journal of biochemistry & cell biology, 2014, Volume: 55

    Topics: Acetylcholinesterase; Antineoplastic Agents; Apoptosis; Blotting, Western; Carcinoma, Hepatocellular; Cell Line; Cell Line, Tumor; Cisplatin; DNA Methylation; Epigenesis, Genetic; Gene Expression Regulation, Neoplastic; Hep G2 Cells; Histones; Humans; Liver Neoplasms; Lysine; Methylation; Mitomycin; Poly(ADP-ribose) Polymerases; Promoter Regions, Genetic; Reverse Transcriptase Polymerase Chain Reaction; RNA Interference; RNA, Antisense

2014
Epigenetic dysregulation by nickel through repressive chromatin domain disruption.
    Proceedings of the National Academy of Sciences of the United States of America, 2014, Oct-07, Volume: 111, Issue:40

    Topics: Acetylation; Amino Acid Sequence; Binding Sites; Blotting, Western; Bronchi; CCCTC-Binding Factor; Cell Line; Chromatin; Epigenesis, Genetic; Epithelial Cells; Gene Expression Profiling; Genome, Human; Histones; Humans; Lysine; Methylation; Nickel; Oligonucleotide Array Sequence Analysis; Promoter Regions, Genetic; Protein Binding; Repressor Proteins; RNA Interference

2014
Regulation of S-adenosylhomocysteine hydrolase by lysine acetylation.
    The Journal of biological chemistry, 2014, Nov-07, Volume: 289, Issue:45

    Topics: Acetylation; Adenosylhomocysteinase; Amino Acid Sequence; Catalysis; Crystallography, X-Ray; Humans; Hydrogen Bonding; Lysine; Methylation; Models, Molecular; Molecular Sequence Data; Mutagenesis, Site-Directed; NAD; Plasmids; Protein Binding; Protein Processing, Post-Translational; Protein Structure, Tertiary; Recombinant Proteins; Sequence Homology, Amino Acid; Structure-Activity Relationship

2014
Yeast histone H3 lysine 4 demethylase Jhd2 regulates mitotic rDNA condensation.
    BMC biology, 2014, Sep-24, Volume: 12

    Topics: Adenosine Triphosphatases; DNA-Binding Proteins; DNA, Ribosomal; Gene Silencing; Histones; Jumonji Domain-Containing Histone Demethylases; Lysine; Methylation; Mitosis; Multiprotein Complexes; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins

2014
Polycomb- and REST-associated histone deacetylases are independent pathways toward a mature neuronal phenotype.
    eLife, 2014, Sep-24, Volume: 3

    Topics: Animals; Cell Differentiation; Chromatin; Embryonic Stem Cells; Gene Expression Regulation; Histone Deacetylases; Histones; Lysine; Methylation; Mice; Neurons; Phenotype; Polycomb Repressive Complex 2; Promoter Regions, Genetic; Repressor Proteins

2014
A687V EZH2 is a driver of histone H3 lysine 27 (H3K27) hypertrimethylation.
    Molecular cancer therapeutics, 2014, Volume: 13, Issue:12

    Topics: Amino Acid Sequence; Amino Acid Substitution; Binding Sites; Cell Line, Tumor; Cluster Analysis; Enhancer of Zeste Homolog 2 Protein; Gene Expression; Gene Expression Profiling; Gene Silencing; Heterozygote; Histones; Humans; Lysine; Methylation; Models, Molecular; Molecular Sequence Data; Mutation; Polycomb Repressive Complex 2; Precursor B-Cell Lymphoblastic Leukemia-Lymphoma; Protein Conformation; Sequence Alignment; Substrate Specificity; Transcriptional Activation

2014
Expression of histone H3 lysine 4 methylation and its demethylases in the developing mouse testis.
    Cell and tissue research, 2014, Volume: 358, Issue:3

    Topics: Animals; Blotting, Western; Gene Expression Regulation, Enzymologic; Histone Demethylases; Histones; Immunohistochemistry; Lysine; Male; Methylation; Mice; Real-Time Polymerase Chain Reaction; RNA, Messenger; Testis

2014
Chromatin-dependent repression of the Arabidopsis floral integrator genes involves plant specific PHD-containing proteins.
    The Plant cell, 2014, Volume: 26, Issue:10

    Topics: Acetylation; Amino Acid Sequence; Arabidopsis; Arabidopsis Proteins; Chromatin; Flowers; Gene Expression Regulation, Developmental; Gene Expression Regulation, Plant; Histone Deacetylases; Histones; Homeodomain Proteins; Lysine; MADS Domain Proteins; Methylation; Molecular Sequence Data; Mutation; Nuclear Proteins; Photoperiod; Protein Binding; Reverse Transcriptase Polymerase Chain Reaction; Sequence Homology, Amino Acid; Time Factors

2014
Application of histone modification-specific interaction domains as an alternative to antibodies.
    Genome research, 2014, Volume: 24, Issue:11

    Topics: Amino Acid Sequence; Antibodies; Binding Sites; Blotting, Western; Chromatin Immunoprecipitation; DNA (Cytosine-5-)-Methyltransferases; DNA Methyltransferase 3A; HEK293 Cells; Histones; Humans; Lysine; Methylation; Peptides; Polycomb Repressive Complex 1; Protein Array Analysis; Protein Binding; Protein Interaction Mapping; Protein Processing, Post-Translational; Reproducibility of Results

2014
NuA4 links methylation of histone H3 lysines 4 and 36 to acetylation of histones H4 and H3.
    The Journal of biological chemistry, 2014, Nov-21, Volume: 289, Issue:47

    Topics: Acetylation; Blotting, Western; Histone Acetyltransferases; Histone Deacetylases; Histones; Lysine; Methylation; Mutation; Nucleosomes; Protein Binding; Protein Subunits; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins; Trans-Activators

2014
Mixed lineage leukaemia histone methylases 1 collaborate with ERα to regulate HOXA10 expression in AML.
    Bioscience reports, 2014, Dec-08, Volume: 34, Issue:6

    Topics: Acute Disease; Apoptosis; Blotting, Western; Cell Line, Tumor; Estradiol; Estrogen Receptor alpha; Estrogen Receptor beta; Estrogens; Gene Expression Regulation, Leukemic; Gene Knockdown Techniques; Histone-Lysine N-Methyltransferase; Histones; HL-60 Cells; Homeobox A10 Proteins; Homeodomain Proteins; Humans; Leukemia, Myeloid; Lysine; Methylation; Myeloid-Lymphoid Leukemia Protein; Promoter Regions, Genetic; Protein Binding; Response Elements; Reverse Transcriptase Polymerase Chain Reaction

2014
A nonpyrrolysine member of the widely distributed trimethylamine methyltransferase family is a glycine betaine methyltransferase.
    Proceedings of the National Academy of Sciences of the United States of America, 2014, Oct-28, Volume: 111, Issue:43

    Topics: Betaine; Chromatography, Thin Layer; Desulfitobacterium; Genes, Bacterial; Glycine N-Methyltransferase; Humans; Lysine; Methylamines; Methylation; Phylogeny; Real-Time Polymerase Chain Reaction

2014
High resolution is not a strict requirement for characterization and quantification of histone post-translational modifications.
    Journal of proteome research, 2014, Dec-05, Volume: 13, Issue:12

    Topics: Acetylation; Amino Acid Sequence; Chromatography, Liquid; HeLa Cells; Histones; Humans; Lysine; Mass Spectrometry; Methylation; Peptides; Protein Processing, Post-Translational; Proteomics; Reproducibility of Results; Tandem Mass Spectrometry

2014
Role of choline and glycine betaine in the formation of N,N-dimethylpiperidinium (mepiquat) under Maillard reaction conditions.
    Food additives & contaminants. Part A, Chemistry, analysis, control, exposure & risk assessment, 2014, Volume: 31, Issue:12

    Topics: Alkaloids; Betaine; Carbon Radioisotopes; Choline; Chromatography, High Pressure Liquid; Deuterium; Hot Temperature; Kinetics; Lysine; Maillard Reaction; Methylation; Models, Chemical; Molecular Structure; Molecular Weight; Piperidines; Spectrometry, Mass, Electrospray Ionization; Tandem Mass Spectrometry

2014
Knockdown of protein tyrosine phosphatase receptor U inhibits growth and motility of gastric cancer cells.
    International journal of clinical and experimental pathology, 2014, Volume: 7, Issue:9

    Topics: beta Catenin; Cell Adhesion; Cell Line, Tumor; Cell Movement; Cell Proliferation; Gene Expression Regulation, Neoplastic; Gene Knockdown Techniques; Histones; Humans; Lysine; Methylation; Neoplasm Invasiveness; Phosphorylation; Receptor-Like Protein Tyrosine Phosphatases, Class 2; RNA Interference; Signal Transduction; Stomach Neoplasms; Time Factors; Transcription, Genetic; Transfection; Tyrosine

2014
Regulation of Wnt signaling target gene expression by the histone methyltransferase DOT1L.
    ACS chemical biology, 2015, Jan-16, Volume: 10, Issue:1

    Topics: Adenosine; Cell Line, Tumor; Enzyme Inhibitors; Gene Expression; HEK293 Cells; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation; Methyltransferases; Phenylurea Compounds; Wnt Signaling Pathway

2015
Small ubiquitin-like modifier (SUMO)-mediated repression of the Xenopus Oocyte 5 S rRNA genes.
    The Journal of biological chemistry, 2014, Dec-19, Volume: 289, Issue:51

    Topics: Animals; Blotting, Western; Cell Nucleus; Embryo, Nonmammalian; Gene Expression Regulation, Developmental; Histones; Immunohistochemistry; Lysine; Methylation; Microscopy, Confocal; Oocytes; Protein Binding; RNA, Ribosomal, 5S; Sumoylation; Transcription Factor TFIIIA; Two-Hybrid System Techniques; Xenopus laevis; Xenopus Proteins

2014
Bivalent histone modifications during tooth development.
    International journal of oral science, 2014, Volume: 6, Issue:4

    Topics: Animals; Cell Differentiation; Dental Papilla; DNA-Binding Proteins; Embryo, Mammalian; Enamel Organ; Enhancer of Zeste Homolog 2 Protein; Epigenesis, Genetic; Gene Expression Regulation, Developmental; Histone-Lysine N-Methyltransferase; Histones; Jumonji Domain-Containing Histone Demethylases; Lysine; Methylation; Mice; Mice, Inbred BALB C; Odontogenesis; Polycomb Repressive Complex 2; Protein Processing, Post-Translational; Tooth Germ

2014
dRYBP counteracts chromatin-dependent activation and repression of transcription.
    PloS one, 2014, Volume: 9, Issue:11

    Topics: Animals; Blotting, Western; Cell Line; Chromatin; Drosophila melanogaster; Drosophila Proteins; Epistasis, Genetic; Gene Expression Regulation; Histones; Lysine; Methylation; Models, Genetic; Mutation; Polycomb Repressive Complex 1; Protein Binding; Repressor Proteins; RNA Interference; Ubiquitin; Ubiquitin-Protein Ligases; Ubiquitinated Proteins

2014
Human METTL20 is a mitochondrial lysine methyltransferase that targets the β subunit of electron transfer flavoprotein (ETFβ) and modulates its activity.
    The Journal of biological chemistry, 2015, Jan-02, Volume: 290, Issue:1

    Topics: Acyl-CoA Dehydrogenases; Amino Acid Sequence; Electron-Transferring Flavoproteins; Escherichia coli; Gene Expression; Glutaryl-CoA Dehydrogenase; HEK293 Cells; HeLa Cells; Humans; Lysine; Methylation; Methyltransferases; Mitochondria; Mitochondrial Proteins; Models, Molecular; Molecular Sequence Data; Protein Processing, Post-Translational; Protein Structure, Secondary; Protein Structure, Tertiary; Protein Subunits; Recombinant Proteins; S-Adenosylmethionine; Sequence Alignment

2015
FMR1 epigenetic silencing commonly occurs in undifferentiated fragile X-affected embryonic stem cells.
    Stem cell reports, 2014, Nov-11, Volume: 3, Issue:5

    Topics: 5' Untranslated Regions; Blotting, Western; Cell Line; DNA Methylation; Embryonic Stem Cells; Epigenesis, Genetic; Fragile X Mental Retardation Protein; Fragile X Syndrome; Gene Expression; Gene Silencing; Histones; Humans; Lysine; Methylation; Octamer Transcription Factor-3; Reverse Transcriptase Polymerase Chain Reaction; Sequence Analysis, DNA; SOXB1 Transcription Factors; Trinucleotide Repeat Expansion; X Chromosome Inactivation

2014
Quantitative ChIP-Seq normalization reveals global modulation of the epigenome.
    Cell reports, 2014, Nov-06, Volume: 9, Issue:3

    Topics: Animals; Benzimidazoles; Chromatin Immunoprecipitation; Drosophila melanogaster; Epigenesis, Genetic; High-Throughput Nucleotide Sequencing; Histones; Humans; Jurkat Cells; Lysine; Methylation; Reference Standards

2014
Contributions of pocket depth and electrostatic interactions to affinity and selectivity of receptors for methylated lysine in water.
    Organic & biomolecular chemistry, 2015, Mar-21, Volume: 13, Issue:11

    Topics: Combinatorial Chemistry Techniques; Lysine; Methylation; Models, Molecular; Molecular Structure; Static Electricity; Water

2015
Activity and specificity of the human SUV39H2 protein lysine methyltransferase.
    Biochimica et biophysica acta, 2015, Volume: 1849, Issue:1

    Topics: Amino Acid Sequence; Circular Dichroism; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation; Mutant Proteins; Phosphorylation; Protein Conformation; Substrate Specificity

2015
Asymmetric histone 3 methylation pattern between paternal and maternal pronuclei in equine zygotes.
    Analytical biochemistry, 2015, Feb-15, Volume: 471

    Topics: Animals; Fathers; Female; Fertilization; Histones; Horses; Lysine; Male; Methylation; Mothers; Zygote

2015
Fine-tuning of histone H3 Lys4 methylation during pseudohyphal differentiation by the CDK submodule of RNA polymerase II.
    Genetics, 2015, Volume: 199, Issue:2

    Topics: Culture Media; Cyclin-Dependent Kinases; Fungal Proteins; Gene Expression Regulation, Fungal; Histones; Hyphae; Lysine; Methylation; Mutation; Phenotype; Promoter Regions, Genetic; RNA Polymerase II; Transcription Factors; Transcription, Genetic; Yeasts

2015
The visualization of large organized chromatin domains enriched in the H3K9me2 mark within a single chromosome in a single cell.
    Epigenetics, 2014, Volume: 9, Issue:11

    Topics: Chromatin; Chromosomes, Human, Pair 11; DNA Probes; Genetic Techniques; HCT116 Cells; Histones; Humans; Image Processing, Computer-Assisted; Lysine; Methylation; Microscopy, Confocal; Single-Cell Analysis

2014
Critical role of lysine 134 methylation on histone H2AX for γ-H2AX production and DNA repair.
    Nature communications, 2014, Dec-09, Volume: 5

    Topics: Animals; Cell Separation; Chlorocebus aethiops; Chromatin; COS Cells; DNA Breaks, Double-Stranded; DNA Damage; DNA Repair; Fibroblasts; Flow Cytometry; Gamma Rays; Gene Expression Regulation; Genes, Dominant; HeLa Cells; Histones; Humans; Immunohistochemistry; Lung Neoplasms; Lysine; Methylation; Mice; Mutation; Phosphorylation; RNA, Small Interfering; Tissue Array Analysis

2014
Degron protease blockade sensor to image epigenetic histone protein methylation in cells and living animals.
    ACS chemical biology, 2015, Jan-16, Volume: 10, Issue:1

    Topics: Animals; Biosensing Techniques; Cell Line, Tumor; Drug Evaluation, Preclinical; Epigenesis, Genetic; Histone-Lysine N-Methyltransferase; Histones; Humans; Leucine; Lysine; Methylation; Mice; Optical Imaging; Pluripotent Stem Cells; Protease Inhibitors; Recombinant Fusion Proteins; RNA, Small Interfering

2015
Specificity analysis of protein lysine methyltransferases using SPOT peptide arrays.
    Journal of visualized experiments : JoVE, 2014, Nov-29, Issue:93

    Topics: Amino Acid Sequence; Histone-Lysine N-Methyltransferase; Histones; Lysine; Methylation; Oligopeptides; Protein Array Analysis; Substrate Specificity

2014
In vitro histone lysine methylation by NSD1, NSD2/MMSET/WHSC1 and NSD3/WHSC1L.
    BMC structural biology, 2014, Dec-12, Volume: 14

    Topics: Catalytic Domain; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Histones; Humans; In Vitro Techniques; Intracellular Signaling Peptides and Proteins; Lysine; Methylation; Models, Molecular; Nuclear Proteins; Protein Structure, Secondary; Repressor Proteins

2014
A chemical proteomics approach for global analysis of lysine monomethylome profiling.
    Molecular & cellular proteomics : MCP, 2015, Volume: 14, Issue:2

    Topics: Amino Acid Sequence; Antibodies; Cell Line; Computational Biology; Humans; Isotope Labeling; Lysine; Methylation; Molecular Sequence Data; Peptides; Proteome; Proteomics; Reproducibility of Results

2015
Genetically encoded molecular biosensors to image histone methylation in living animals.
    Analytical chemistry, 2015, Jan-20, Volume: 87, Issue:2

    Topics: Acetylation; Animals; Biosensing Techniques; Enzyme Inhibitors; HEK293 Cells; HeLa Cells; Hep G2 Cells; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Histones; Humans; Image Processing, Computer-Assisted; Lysine; Methylation; Protein Processing, Post-Translational

2015
Epigenetic silencing of microRNA-218 via EZH2-mediated H3K27 trimethylation is involved in malignant transformation of HBE cells induced by cigarette smoke extract.
    Archives of toxicology, 2016, Volume: 90, Issue:2

    Topics: Bronchi; Cell Line; Cell Transformation, Neoplastic; Enhancer of Zeste Homolog 2 Protein; Epigenesis, Genetic; Epithelial Cells; Gene Expression Regulation, Neoplastic; Histones; Humans; Lung Neoplasms; Lysine; Methylation; MicroRNAs; Mitogen-Activated Protein Kinase 7; Smoking

2016
Mitotic accumulation of dimethylated lysine 79 of histone H3 is important for maintaining genome integrity during mitosis in human cells.
    Genetics, 2015, Volume: 199, Issue:2

    Topics: Cell Cycle; Cell Line; Cytoplasm; Gene Expression; Gene Silencing; Genome, Human; Genomic Instability; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation; Methyltransferases; Mitosis; Protein Transport; RNA Interference; RNA, Small Interfering; Ubiquitin-Protein Ligases

2015
Complex coding of endogenous siRNA, transcriptional silencing and H3K9 methylation on native targets of germline nuclear RNAi in C. elegans.
    BMC genomics, 2014, Dec-22, Volume: 15

    Topics: Animals; Argonaute Proteins; Caenorhabditis elegans; Chromatin; Gene Expression Profiling; Histones; Lysine; Methylation; Retroelements; RNA Interference; RNA Polymerase II; RNA, Small Interfering; Transcription, Genetic

2014
Persistence of furan-induced epigenetic aberrations in the livers of F344 rats.
    Toxicological sciences : an official journal of the Society of Toxicology, 2015, Volume: 144, Issue:2

    Topics: Acetylation; Animals; DNA Damage; Epigenesis, Genetic; Furans; Gene Expression Profiling; Histones; Liver; Lysine; Male; Methylation; Rats; Rats, Inbred F344

2015
Terminal epidermal differentiation is regulated by the interaction of Fra-2/AP-1 with Ezh2 and ERK1/2.
    Genes & development, 2015, Jan-15, Volume: 29, Issue:2

    Topics: Animals; Cell Differentiation; Cells, Cultured; Embryo, Mammalian; Enhancer of Zeste Homolog 2 Protein; Fos-Related Antigen-2; Gene Expression Regulation, Developmental; Keratinocytes; Lysine; Methylation; Mice; Mitogen-Activated Protein Kinase 1; Phosphorylation; Polycomb Repressive Complex 2; Transcription Factor AP-1

2015
Directed targeting of chromatin to the nuclear lamina is mediated by chromatin state and A-type lamins.
    The Journal of cell biology, 2015, Jan-05, Volume: 208, Issue:1

    Topics: Active Transport, Cell Nucleus; Animals; Binding Sites; Chromatin; Chromatin Assembly and Disassembly; DNA-Binding Proteins; Fibroblasts; Gene Expression Regulation; Histones; Lamin Type A; Lysine; Methylation; Mice; Mice, Inbred C57BL; Mice, Transgenic; Molecular Sequence Data; NIH 3T3 Cells; Nuclear Lamina; Nucleic Acid Conformation; Protein Conformation; RNA Interference; Time Factors; Transfection; YY1 Transcription Factor

2015
The proximal J kappa germline-transcript promoter facilitates receptor editing through control of ordered recombination.
    PloS one, 2015, Volume: 10, Issue:1

    Topics: Animals; B-Lymphocytes; Cells, Cultured; Female; Flow Cytometry; Gene Expression; Germ Cells; Histones; Immunoglobulin Joining Region; Immunoglobulin kappa-Chains; Immunoglobulin Variable Region; Lysine; Male; Methylation; Mice, Inbred C57BL; Mice, Knockout; Promoter Regions, Genetic; Receptors, Antigen, B-Cell; Reverse Transcriptase Polymerase Chain Reaction; V(D)J Recombination

2015
Biochemical reconstitution and phylogenetic comparison of human SET1 family core complexes involved in histone methylation.
    The Journal of biological chemistry, 2015, Mar-06, Volume: 290, Issue:10

    Topics: Amino Acid Substitution; Crystallography, X-Ray; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation; Multiprotein Complexes; Myeloid-Lymphoid Leukemia Protein; Nuclear Proteins; Phylogeny; Protein Binding; Transcription Factors

2015
Lysine demethylase KDM4A associates with translation machinery and regulates protein synthesis.
    Cancer discovery, 2015, Volume: 5, Issue:3

    Topics: Aminopyridines; Drug Resistance; Humans; Hydrazones; Jumonji Domain-Containing Histone Demethylases; Lysine; Methylation; Peptide Chain Initiation, Translational; Peptide Initiation Factors; Protein Binding; Protein Biosynthesis; Protein Kinase Inhibitors; Ribosomal Proteins; TOR Serine-Threonine Kinases

2015
Histone methylation patterns in astrocytes are influenced by age following ischemia.
    Epigenetics, 2015, Volume: 10, Issue:2

    Topics: Acetylation; Acetyltransferases; Aging; Animals; Astrocytes; Brain Ischemia; Cerebral Cortex; Female; Histones; Lysine; Methylation; Methyltransferases; Rats, Sprague-Dawley

2015
A tight control of Rif1 by Oct4 and Smad3 is critical for mouse embryonic stem cell stability.
    Cell death & disease, 2015, Jan-08, Volume: 6

    Topics: Animals; Cell Differentiation; Cell Movement; Cell Proliferation; DNA Repair; Embryonic Stem Cells; Gene Expression Profiling; Gene Expression Regulation, Developmental; Gene Knockdown Techniques; Histones; Lysine; Methylation; Mice; Models, Biological; Octamer Transcription Factor-3; Promoter Regions, Genetic; Protein Binding; RNA, Messenger; RNA, Small Interfering; Smad3 Protein; Telomere-Binding Proteins; Teratoma; Ultraviolet Rays

2015
The requirement of histone modification by PRDM12 and Kdm4a for the development of pre-placodal ectoderm and neural crest in Xenopus.
    Developmental biology, 2015, Mar-01, Volume: 399, Issue:1

    Topics: Amino Acid Sequence; Animals; Animals, Genetically Modified; Blotting, Western; Carrier Proteins; Ectoderm; Embryo, Nonmammalian; Gene Expression Regulation, Developmental; Gene Knockdown Techniques; Histone Demethylases; Histones; In Situ Hybridization; Lysine; Methylation; Molecular Sequence Data; Nerve Tissue Proteins; Neural Crest; Promoter Regions, Genetic; Protein Binding; Reverse Transcriptase Polymerase Chain Reaction; Sequence Homology, Amino Acid; Xenopus laevis; Xenopus Proteins

2015
Global and specific responses of the histone acetylome to systematic perturbation.
    Molecular cell, 2015, Feb-05, Volume: 57, Issue:3

    Topics: Acetylation; Animals; Cell Line; Drosophila melanogaster; Drosophila Proteins; Histone Acetyltransferases; Histone Deacetylases; Histones; Humans; Lysine; Mass Spectrometry; Methylation; Proteomics

2015
The histone methyltransferase Smyd2 is a negative regulator of macrophage activation by suppressing interleukin 6 (IL-6) and tumor necrosis factor α (TNF-α) production.
    The Journal of biological chemistry, 2015, Feb-27, Volume: 290, Issue:9

    Topics: Animals; Blotting, Western; Cell Differentiation; Cell Line; Cells, Cultured; Flow Cytometry; Gene Expression Regulation; Histone-Lysine N-Methyltransferase; Histones; Interleukin-6; Lysine; Macrophage Activation; Macrophages; MAP Kinase Signaling System; Methylation; Mice, Inbred C57BL; Mutation; NF-kappa B; Reverse Transcriptase Polymerase Chain Reaction; RNA Interference; T-Lymphocytes, Regulatory; Th17 Cells; Tumor Necrosis Factor-alpha

2015
Conservation of complete trimethylation of lysine-43 in the rotor ring of c-subunits of metazoan adenosine triphosphate (ATP) synthases.
    Molecular & cellular proteomics : MCP, 2015, Volume: 14, Issue:4

    Topics: Amino Acid Sequence; Animals; Conserved Sequence; Humans; Invertebrates; Lysine; Methylation; Molecular Sequence Data; Molecular Weight; Peptides; Phylogeny; Protein Processing, Post-Translational; Protein Subunits; Proton-Translocating ATPases; Spectrometry, Mass, Electrospray Ionization; Tandem Mass Spectrometry

2015
NF-κB-dependent and -independent epigenetic modulation using the novel anti-cancer agent DMAPT.
    Cell death & disease, 2015, Jan-22, Volume: 6

    Topics: Animals; Apoptosis Regulatory Proteins; Bcl-2-Like Protein 11; Biomarkers, Tumor; Breast Neoplasms; Cell Line, Tumor; Epigenesis, Genetic; Female; Gene Expression Regulation, Neoplastic; Genome, Human; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Histones; Humans; I-kappa B Proteins; Intracellular Signaling Peptides and Proteins; Lysine; Membrane Proteins; Methylation; Mice; NF-kappa B; NF-KappaB Inhibitor alpha; Nuclear Proteins; Prognosis; Protein Processing, Post-Translational; Proto-Oncogene Proteins; Sesquiterpenes; Transcription Factor RelA; Urinary Bladder Neoplasms

2015
Jarid2 Methylation via the PRC2 Complex Regulates H3K27me3 Deposition during Cell Differentiation.
    Molecular cell, 2015, Mar-05, Volume: 57, Issue:5

    Topics: Animals; Cell Differentiation; Cell Line; Chromatin; Drosophila melanogaster; Drosophila Proteins; Embryonic Stem Cells; Enhancer of Zeste Homolog 2 Protein; Female; HEK293 Cells; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation; Mice, Knockout; Models, Genetic; Mutation; Polycomb Repressive Complex 2; RNA Interference

2015
Lysine-specific demethylase 2 suppresses lipid influx and metabolism in hepatic cells.
    Molecular and cellular biology, 2015, Volume: 35, Issue:7

    Topics: Animals; Down-Regulation; Hep G2 Cells; Hepatocytes; Histone Demethylases; Histones; Humans; Lipid Metabolism; Lipids; Liver; Lysine; Male; Methylation; Mice, Inbred C57BL; Proto-Oncogene Proteins c-jun

2015
13C NMR detects conformational change in the 100-kD membrane transporter ClC-ec1.
    Journal of biomolecular NMR, 2015, Volume: 61, Issue:3-4

    Topics: Antiporters; Carbon Radioisotopes; Carbon-13 Magnetic Resonance Spectroscopy; Chloride-Bicarbonate Antiporters; Crystallography, X-Ray; Cysteine; Escherichia coli; Escherichia coli Proteins; Lysine; Methionine; Methylation; Models, Molecular; Nuclear Magnetic Resonance, Biomolecular; Protein Conformation; Protein Structure, Tertiary

2015
ROW1 maintains quiescent centre identity by confining WOX5 expression to specific cells.
    Nature communications, 2015, Jan-29, Volume: 6

    Topics: Arabidopsis; Arabidopsis Proteins; Gene Expression Regulation, Plant; Genetic Complementation Test; Histones; Homeodomain Proteins; Lysine; Meristem; Methylation; Mutation; Phenotype; Plant Cells; Promoter Regions, Genetic; Protein Binding; Repressor Proteins; RNA Interference; RNA, Messenger

2015
Small-molecule modulators of methyl-lysine binding for the CBX7 chromodomain.
    Chemistry & biology, 2015, Feb-19, Volume: 22, Issue:2

    Topics: Binding Sites; Cell Line, Tumor; Cyclin-Dependent Kinase Inhibitor p16; Fluorescein-5-isothiocyanate; Histones; Humans; Lysine; Methylation; Polycomb Repressive Complex 1; Protein Binding; Protein Structure, Tertiary; Small Molecule Libraries; Static Electricity; Suramin

2015
Nanogrooved substrate promotes direct lineage reprogramming of fibroblasts to functional induced dopaminergic neurons.
    Biomaterials, 2015, Volume: 45

    Topics: Animals; Biomarkers; Cell Differentiation; Cell Lineage; Cell Shape; Cellular Reprogramming; Cytoskeleton; Dopaminergic Neurons; Embryo, Mammalian; Fibroblasts; Gene Expression Regulation; Histones; Lysine; Methylation; Mice; Nanoparticles; Phenotype; Proto-Oncogene Proteins c-met

2015
Cadmium induces histone H3 lysine methylation by inhibiting histone demethylase activity.
    Toxicological sciences : an official journal of the Society of Toxicology, 2015, Volume: 145, Issue:1

    Topics: Animals; Cadmium; Cattle; Cell Line; Enzyme Inhibitors; Histone Demethylases; Histones; Lysine; Methylation

2015
DNA double strand break repair pathway choice: a chromatin based decision?
    Nucleus (Austin, Tex.), 2015, Volume: 6, Issue:2

    Topics: Chromatin; DNA Breaks, Double-Stranded; DNA Repair; Genomic Instability; Histones; Homologous Recombination; Lysine; Methylation; Models, Biological

2015
DEFORMED FLORAL ORGAN1 (DFO1) regulates floral organ identity by epigenetically repressing the expression of OsMADS58 in rice (Oryza sativa).
    The New phytologist, 2015, Volume: 206, Issue:4

    Topics: Chromatin; Cloning, Molecular; Epigenesis, Genetic; Flowers; Gene Expression Regulation, Plant; Genes, Plant; Histones; Lysine; Methylation; Mutation; Nuclear Proteins; Organ Specificity; Organogenesis; Oryza; Phenotype; Plant Proteins; Polycomb-Group Proteins; Protein Binding; Real-Time Polymerase Chain Reaction; Repressor Proteins

2015
Mass spectrometric quantification of histone post-translational modifications by a hybrid chemical labeling method.
    Molecular & cellular proteomics : MCP, 2015, Volume: 14, Issue:4

    Topics: Chromatography, Liquid; Gene Knockdown Techniques; HEK293 Cells; HeLa Cells; Histone Demethylases; Histones; Humans; Lysine; Mass Spectrometry; Methylation; Peptides; Propionates; Protein Processing, Post-Translational; Reference Standards; RNA, Small Interfering; Staining and Labeling; Trypsin

2015
A specific LSD1/KDM1A isoform regulates neuronal differentiation through H3K9 demethylation.
    Molecular cell, 2015, Mar-19, Volume: 57, Issue:6

    Topics: Alternative Splicing; Cell Differentiation; Cell Movement; Gene Expression Regulation; Gene Knockdown Techniques; HeLa Cells; Histone Demethylases; Histones; Humans; Lysine; Membrane Proteins; Methylation; Microfilament Proteins; Neurons; Promoter Regions, Genetic; Protein Isoforms

2015
Coupling of T cell receptor specificity to natural killer T cell development by bivalent histone H3 methylation.
    The Journal of experimental medicine, 2015, Mar-09, Volume: 212, Issue:3

    Topics: Animals; CD4 Antigens; CD8-Positive T-Lymphocytes; Chromatin; Enhancer of Zeste Homolog 2 Protein; Histone Demethylases; Histones; Jumonji Domain-Containing Histone Demethylases; Kruppel-Like Transcription Factors; Lysine; Methylation; Mice, Inbred C57BL; Mice, Transgenic; Natural Killer T-Cells; Polycomb Repressive Complex 2; Promoter Regions, Genetic; Promyelocytic Leukemia Zinc Finger Protein; Receptors, Antigen, T-Cell; T-Cell Antigen Receptor Specificity

2015
Histone lysine methyltransferase Ezh1 promotes TLR-triggered inflammatory cytokine production by suppressing Tollip.
    Journal of immunology (Baltimore, Md. : 1950), 2015, Mar-15, Volume: 194, Issue:6

    Topics: Animals; Blotting, Western; Cells, Cultured; Cytokines; Dendritic Cells; Histones; Immunity, Innate; Inflammation Mediators; Intracellular Signaling Peptides and Proteins; Lipopolysaccharides; Lysine; Macrophages; Methylation; Mice, Inbred C57BL; Oligodeoxyribonucleotides; Poly I-C; Polycomb Repressive Complex 2; Promoter Regions, Genetic; Protein Binding; Reverse Transcriptase Polymerase Chain Reaction; RNA Interference; Toll-Like Receptors; Transcriptome

2015
Epigenetic remodeling in B-cell acute lymphoblastic leukemia occurs in two tracks and employs embryonic stem cell-like signatures.
    Nucleic acids research, 2015, Mar-11, Volume: 43, Issue:5

    Topics: Alcohol Oxidoreductases; B-Lymphocytes; Child; Co-Repressor Proteins; CpG Islands; DNA Methylation; Embryonic Stem Cells; Epigenomics; Gene Expression Profiling; Histones; Humans; Lysine; Methylation; Neoplasm Proteins; Nerve Tissue Proteins; Oligonucleotide Array Sequence Analysis; Polycomb Repressive Complex 2; Precursor Cell Lymphoblastic Leukemia-Lymphoma; Precursor Cells, B-Lymphoid; Signal Transduction; Transcription Factors

2015
DNA methylation and histone modification patterns during the late embryonic and early postnatal development of chickens.
    Poultry science, 2015, Volume: 94, Issue:4

    Topics: Acetylation; Animals; Apoptosis; Avian Proteins; Caspase 3; Cell Proliferation; Chick Embryo; Chickens; DNA Methylation; Gene Expression; Histones; Jejunum; Liver; Lysine; Methylation; Pectoralis Muscles; Proliferating Cell Nuclear Antigen

2015
A linear time algorithm for detecting long genomic regions enriched with a specific combination of epigenetic states.
    BMC genomics, 2015, Volume: 16 Suppl 2

    Topics: Algorithms; Animals; Computational Biology; Epigenesis, Genetic; Epigenomics; Genomics; Histones; Humans; Internet; Lysine; Methylation; Oryzias; Reproducibility of Results; Software

2015
H3K4me3 demethylation by the histone demethylase KDM5C/JARID1C promotes DNA replication origin firing.
    Nucleic acids research, 2015, Mar-11, Volume: 43, Issue:5

    Topics: Cell Cycle; Cell Cycle Proteins; Chromatin; DNA Replication; HeLa Cells; Histone Demethylases; Histones; Humans; Immunoblotting; Lysine; Methylation; Oxidoreductases, N-Demethylating; Proliferating Cell Nuclear Antigen; Protein Binding; Replication Origin; RNA Interference; Time Factors

2015
KdmA, a histone H3 demethylase with bipartite function, differentially regulates primary and secondary metabolism in Aspergillus nidulans.
    Molecular microbiology, 2015, Volume: 96, Issue:4

    Topics: Aspergillus nidulans; Co-Repressor Proteins; Gene Expression Profiling; Gene Expression Regulation, Fungal; Genome, Fungal; Histone Demethylases; Histones; Light; Lysine; Mass Spectrometry; Methylation; Models, Molecular; Phenotype; Phylogeny; Secondary Metabolism; Sequence Deletion

2015
Transcriptional activity of the islet β cell factor Pdx1 is augmented by lysine methylation catalyzed by the methyltransferase Set7/9.
    The Journal of biological chemistry, 2015, Apr-10, Volume: 290, Issue:15

    Topics: Amino Acid Sequence; Animals; Cell Line, Tumor; HEK293 Cells; Histone-Lysine N-Methyltransferase; Homeodomain Proteins; Humans; Immunoblotting; Insulin-Secreting Cells; Lysine; Methylation; Mice; Mice, Inbred C57BL; Mice, Knockout; Molecular Sequence Data; NIH 3T3 Cells; Protein Binding; Reverse Transcriptase Polymerase Chain Reaction; Tandem Mass Spectrometry; Trans-Activators; Transcription, Genetic

2015
Neighboring Genes Show Correlated Evolution in Gene Expression.
    Molecular biology and evolution, 2015, Volume: 32, Issue:7

    Topics: 5-Methylcytosine; Animals; Cerebellum; Chromosomes, Human, Pair 2; Computer Simulation; Cytosine; Evolution, Molecular; Female; Gene Expression Regulation; Genes; Histones; Humans; Lysine; Male; Methylation; Monte Carlo Method; Organ Specificity; Primates; Statistics, Nonparametric; Up-Regulation

2015
Lysine methylation modulates the protein-protein interactions of yeast cytochrome C Cyc1p.
    Proteomics, 2015, Volume: 15, Issue:13

    Topics: Blotting, Western; Cytochromes c; Escherichia coli; Lysine; Mass Spectrometry; Methylation; Protein Binding; Two-Hybrid System Techniques

2015
The PHD-finger module of the Arabidopsis thaliana defense regulator EDM2 can recognize triply modified histone H3 peptides.
    Plant signaling & behavior, 2014, Volume: 9, Issue:7

    Topics: Amino Acid Sequence; Arabidopsis; Arabidopsis Proteins; Disease Resistance; Escherichia coli; Gene Expression Regulation, Plant; Histones; Lysine; Methylation; Peptides; Protein Binding; Protein Processing, Post-Translational; Transcription Factors; Transcription, Genetic; Zinc Fingers

2014
The zinc finger proteins ZNF644 and WIZ regulate the G9a/GLP complex for gene repression.
    eLife, 2015, Mar-19, Volume: 4

    Topics: Base Sequence; Binding Sites; Blotting, Western; Cell Line, Tumor; Chromatin; Gene Expression Profiling; Gene Expression Regulation; HEK293 Cells; Histocompatibility Antigens; Histone-Lysine N-Methyltransferase; Histones; Humans; Kruppel-Like Transcription Factors; Lysine; Methylation; Multiprotein Complexes; Oligonucleotide Array Sequence Analysis; Protein Binding; Reverse Transcriptase Polymerase Chain Reaction; RNA Interference; Transcription Factors; Zinc Fingers

2015
Overexpression of JMJD3 may contribute to demethylation of H3K27me3 in CD4+ T cells from patients with systemic sclerosis.
    Clinical immunology (Orlando, Fla.), 2015, Volume: 161, Issue:2

    Topics: Adult; Blotting, Western; CD4-Positive T-Lymphocytes; Female; Gene Expression; Histones; Humans; Jumonji Domain-Containing Histone Demethylases; Lysine; Male; Methylation; Middle Aged; Reverse Transcriptase Polymerase Chain Reaction; Scleroderma, Systemic

2015
The TALE transcription factor homothorax functions to assemble heterochromatin during Drosophila embryogenesis.
    PloS one, 2015, Volume: 10, Issue:3

    Topics: Animals; Base Sequence; Binding Sites; Cell Nucleolus; Deoxyribonuclease I; DNA Breaks; DNA, Ribosomal; DNA, Satellite; Drosophila melanogaster; Drosophila Proteins; Embryo, Nonmammalian; Embryonic Development; Female; Heterochromatin; Histones; Homeodomain Proteins; Lysine; Methylation; Molecular Sequence Data; Mutation; Nucleic Acid Conformation; Protein Binding; RNA, Ribosomal; Transcription Factors; Transcription, Genetic

2015
H3K27me3 is an Epigenetic Mark of Relevance in Endometriosis.
    Reproductive sciences (Thousand Oaks, Calif.), 2015, Volume: 22, Issue:9

    Topics: Adolescent; Adult; Blotting, Western; Cell Line; Cell Proliferation; Endometriosis; Endometrium; Enhancer of Zeste Homolog 2 Protein; Epigenesis, Genetic; Epithelial Cells; Female; Histones; Humans; Immunohistochemistry; Lysine; Methylation; Middle Aged; Polycomb Repressive Complex 2; Progesterone; Protein Processing, Post-Translational; Tissue Array Analysis; Young Adult

2015
Unrestricted modification search reveals lysine methylation as major modification induced by tissue formalin fixation and paraffin embedding.
    Proteomics, 2015, Volume: 15, Issue:15

    Topics: Amino Acid Sequence; Chromatography, Liquid; Cluster Analysis; Fixatives; Formaldehyde; Frozen Sections; Humans; Kidney; Lysine; Methylation; Paraffin Embedding; Proteome; Proteomics; Reproducibility of Results; Tandem Mass Spectrometry; Tissue Fixation

2015
Clustering of mammalian Hox genes with other H3K27me3 targets within an active nuclear domain.
    Proceedings of the National Academy of Sciences of the United States of America, 2015, Apr-14, Volume: 112, Issue:15

    Topics: Animals; Cells, Cultured; Chromosomes, Mammalian; Embryo, Mammalian; Embryonic Stem Cells; Female; Gene Expression Profiling; Gene Expression Regulation, Developmental; Histones; Homeodomain Proteins; Lamin Type B; Lysine; Male; Methylation; Mice; Models, Genetic; Multigene Family; Nuclear Proteins; Oligonucleotide Array Sequence Analysis; Polycomb-Group Proteins; Protein Binding

2015
Epigenetics. Restricted epigenetic inheritance of H3K9 methylation.
    Science (New York, N.Y.), 2015, Apr-03, Volume: 348, Issue:6230

    Topics: Cell Cycle Proteins; Epigenesis, Genetic; Heterochromatin; Histone-Lysine N-Methyltransferase; Histones; Lysine; Methylation; Methyltransferases; Mutation; Nuclear Proteins; Protein Processing, Post-Translational; Schizosaccharomyces; Schizosaccharomyces pombe Proteins

2015
Trimethylation of Lys36 on H3 restricts gene expression change during aging and impacts life span.
    Genes & development, 2015, Apr-01, Volume: 29, Issue:7

    Topics: Aging; Animals; Caenorhabditis elegans; Drosophila melanogaster; Gene Expression Regulation; Histones; Longevity; Lysine; Methylation

2015
Release of human cytomegalovirus from latency by a KAP1/TRIM28 phosphorylation switch.
    eLife, 2015, Apr-07, Volume: 4

    Topics: Antigens, CD34; Chromobox Protein Homolog 5; Chromosomal Proteins, Non-Histone; Cytomegalovirus; Genome, Viral; Hematopoietic Stem Cells; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation; Monocytes; NF-kappa B; Phosphorylation; Protein Methyltransferases; Repressor Proteins; TOR Serine-Threonine Kinases; Tripartite Motif-Containing Protein 28; Virus Latency; Virus Replication

2015
MORF-RELATED GENE702, a Reader Protein of Trimethylated Histone H3 Lysine 4 and Histone H3 Lysine 36, Is Involved in Brassinosteroid-Regulated Growth and Flowering Time Control in Rice.
    Plant physiology, 2015, Volume: 168, Issue:4

    Topics: Brassinosteroids; Chromatin; Down-Regulation; Flowers; Gene Expression Regulation, Developmental; Gene Expression Regulation, Plant; Gene Knockdown Techniques; Genes, Reporter; Histone-Lysine N-Methyltransferase; Histones; Lysine; Methylation; Oryza; Phenotype; Phylogeny; Plant Proteins; Protein Binding; Time Factors

2015
The basal transcription complex component TAF3 transduces changes in nuclear phosphoinositides into transcriptional output.
    Molecular cell, 2015, May-07, Volume: 58, Issue:3

    Topics: Amino Acid Sequence; Animals; Cell Differentiation; Cell Line; Cell Nucleus; Electrophoresis, Polyacrylamide Gel; Gene Expression Profiling; Histones; Homeodomain Proteins; Lysine; Methylation; Mice; Minor Histocompatibility Antigens; Molecular Sequence Data; Mutation; Myoblasts; Oligonucleotide Array Sequence Analysis; Phosphatidylinositols; Phosphotransferases (Alcohol Group Acceptor); Protein Binding; RNA Interference; Sequence Homology, Amino Acid; TATA-Binding Protein Associated Factors; Transcription Factor TFIID; Transcription, Genetic; Zebrafish

2015
Repression of hypoxia-inducible factor α signaling by Set7-mediated methylation.
    Nucleic acids research, 2015, May-26, Volume: 43, Issue:10

    Topics: Animals; Basic Helix-Loop-Helix Transcription Factors; Cell Hypoxia; Cell Line; Cells, Cultured; Gene Expression Regulation; Glucose; Histone-Lysine N-Methyltransferase; Humans; Hypoxia-Inducible Factor 1, alpha Subunit; Lysine; Methylation; Mice; Signal Transduction; Transcription, Genetic

2015
Dysregulation of AKT Pathway by SMYD2-Mediated Lysine Methylation on PTEN.
    Neoplasia (New York, N.Y.), 2015, Volume: 17, Issue:4

    Topics: Acetylation; Cell Line, Tumor; Genes, Tumor Suppressor; HEK293 Cells; HeLa Cells; Histone-Lysine N-Methyltransferase; Humans; Lysine; Methylation; Phosphatidylinositol 3-Kinases; Phosphorylation; Protein Processing, Post-Translational; Proto-Oncogene Proteins c-akt; PTEN Phosphohydrolase

2015
Paternal H3K4 methylation is required for minor zygotic gene activation and early mouse embryonic development.
    EMBO reports, 2015, Volume: 16, Issue:7

    Topics: Animals; Embryonic Development; Epigenesis, Genetic; Fathers; Female; Fertilization; Fertilization in Vitro; Histones; Lysine; Male; Methylation; Mice; Mutation; Pregnancy; Spermatozoa; Transcriptional Activation; Zygote

2015
Immunolabelling of human metaphase chromosomes reveals the same banded distribution of histone H3 isoforms methylated at lysine 4 in primary lymphocytes and cultured cell lines.
    BMC genetics, 2015, Apr-29, Volume: 16

    Topics: Cell Line; Chromosome Banding; Chromosomes, Human; Histones; Humans; Lymphocytes; Lysine; Metaphase; Methylation; Protein Isoforms

2015
ChREBP binding and histone modifications modulate hepatic expression of the Fasn gene in a metabolic syndrome rat model.
    Nutrition (Burbank, Los Angeles County, Calif.), 2015, Volume: 31, Issue:6

    Topics: Acetylation; Animals; Basic Helix-Loop-Helix Leucine Zipper Transcription Factors; Epigenesis, Genetic; Fatty Acid Synthases; Histone Code; Histones; Insulin; Insulin Resistance; Lipogenesis; Liver; Lysine; Male; Metabolic Syndrome; Methylation; Promoter Regions, Genetic; Protein Processing, Post-Translational; Rats; Rats, Inbred SHR; RNA, Messenger

2015
Genome-wide mapping of histone H3 lysine 4 trimethylation in Eucalyptus grandis developing xylem.
    BMC plant biology, 2015, May-10, Volume: 15

    Topics: Cell Wall; Chromatin Immunoprecipitation; Chromosome Mapping; Eucalyptus; Gene Expression Regulation, Plant; Genes, Plant; Genetic Association Studies; Genome, Plant; Histones; Lysine; Methylation; Promoter Regions, Genetic; Real-Time Polymerase Chain Reaction; Reproducibility of Results; Sequence Analysis, DNA; Wood; Xylem

2015
Chromatin-Mediated Reversible Silencing of Sense-Antisense Gene Pairs in Embryonic Stem Cells Is Consolidated upon Differentiation.
    Molecular and cellular biology, 2015, Volume: 35, Issue:14

    Topics: Animals; Cell Differentiation; Cells, Cultured; Chromatin; CpG Islands; DNA Methylation; DNA, Antisense; Doxycycline; Embryonic Stem Cells; Flow Cytometry; Gene Expression; Gene Silencing; Green Fluorescent Proteins; Histones; Lysine; Methylation; Mice, 129 Strain; Mice, Transgenic; Models, Genetic; Promoter Regions, Genetic

2015
Alternation of histone and DNA methylation in human atherosclerotic carotid plaques.
    Thrombosis and haemostasis, 2015, Volume: 114, Issue:2

    Topics: Aged; Blood Cells; Carotid Arteries; Carotid Artery Diseases; Disease Progression; DNA (Cytosine-5-)-Methyltransferase 1; DNA (Cytosine-5-)-Methyltransferases; DNA Methylation; DNA-Binding Proteins; Enzyme Induction; Female; Histocompatibility Antigens; Histone-Lysine N-Methyltransferase; Humans; Inflammation; Leukocytes; Long Interspersed Nucleotide Elements; Lysine; Macrophages; Male; Methylation; Middle Aged; Mixed Function Oxygenases; Muscle, Smooth, Vascular; Myocytes, Smooth Muscle; Neoplasm Proteins; Plaque, Atherosclerotic; Protein Processing, Post-Translational; Proto-Oncogene Proteins; Real-Time Polymerase Chain Reaction

2015
SET7/9 Enzyme Regulates Cytokine-induced Expression of Inducible Nitric-oxide Synthase through Methylation of Lysine 4 at Histone 3 in the Islet β Cell.
    The Journal of biological chemistry, 2015, Jul-03, Volume: 290, Issue:27

    Topics: Animals; Apoptosis; Histone-Lysine N-Methyltransferase; Histones; Insulin-Secreting Cells; Interferon-gamma; Interleukin-1; Interleukin-1beta; Islets of Langerhans; Lysine; Methylation; Mice; Mice, Knockout; Nitric Oxide Synthase Type II; Protein Methyltransferases; Tumor Necrosis Factor-alpha

2015
Synthesis of histone proteins by CPE ligation using a recombinant peptide as the C-terminal building block.
    Journal of biochemistry, 2015, Volume: 158, Issue:5

    Topics: Automation, Laboratory; Chromatography, High Pressure Liquid; Chromatography, Reverse-Phase; Combinatorial Chemistry Techniques; Cysteine; Dipeptides; Histones; Humans; Japan; Lysine; Methylation; Models, Molecular; Oligopeptides; Peptide Fragments; Protein Processing, Post-Translational; Recombinant Proteins; Solid-Phase Synthesis Techniques; Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization

2015
Global quantification of heterochromatin-associated histone methylations in cell lines with differential sensitivity to ionizing radiation.
    Acta biochimica Polonica, 2015, Volume: 62, Issue:2

    Topics: DNA Damage; Dose-Response Relationship, Radiation; HeLa Cells; Heterochromatin; Histones; Humans; Lysine; MCF-7 Cells; Methylation; Radiation Tolerance; Radiation, Ionizing; Tumor Suppressor Protein p53

2015
The Arabidopsis GAGA-Binding Factor BASIC PENTACYSTEINE6 Recruits the POLYCOMB-REPRESSIVE COMPLEX1 Component LIKE HETEROCHROMATIN PROTEIN1 to GAGA DNA Motifs.
    Plant physiology, 2015, Volume: 168, Issue:3

    Topics: Arabidopsis; Arabidopsis Proteins; Carrier Proteins; Chromosomal Proteins, Non-Histone; DNA-Binding Proteins; Gene Expression Regulation, Plant; Genetic Loci; Genetic Pleiotropy; Histones; Lysine; Methylation; Models, Biological; Mutation; Nuclear Proteins; Nucleotide Motifs; Polycomb-Group Proteins; Protein Binding; Protein Multimerization; Protein Structure, Tertiary

2015
High-resolution profiling of histone h3 lysine 36 trimethylation in metastatic renal cell carcinoma.
    Oncogene, 2016, Mar-24, Volume: 35, Issue:12

    Topics: Carcinoma, Renal Cell; Chromatin Immunoprecipitation; Cohort Studies; Histones; Humans; Kidney Neoplasms; Lysine; Methylation; Neoplasm Metastasis

2016
Kisspeptin Induces Dynamic Chromatin Modifications to Control GnRH Gene Expression.
    Molecular neurobiology, 2016, Volume: 53, Issue:5

    Topics: Acetylation; Animals; Cell Line; Chromatin; Enhancer Elements, Genetic; Gene Expression Regulation; Gonadotropin-Releasing Hormone; Histones; Kisspeptins; Lysine; Methylation; Mice; Models, Biological; Nucleic Acid Conformation; Phosphorylation; Phosphoserine; Response Elements; RNA Polymerase II; Transcription, Genetic

2016
Genome-Wide H3K4me3 Analysis in Angus Cattle with Divergent Tenderness.
    PloS one, 2015, Volume: 10, Issue:6

    Topics: Animals; Cattle; Gene Expression Profiling; Genomics; Histones; Lysine; Male; Methylation; Molecular Sequence Annotation; Muscle, Skeletal; Promoter Regions, Genetic; Red Meat

2015
Osmotic stress induces phosphorylation of histone H3 at threonine 3 in pericentromeric regions of Arabidopsis thaliana.
    Proceedings of the National Academy of Sciences of the United States of America, 2015, Jul-07, Volume: 112, Issue:27

    Topics: Arabidopsis; Arabidopsis Proteins; Centromere; Chromosomes, Plant; Gene Expression Regulation, Plant; Heterochromatin; Histones; Immunoblotting; Lysine; Methylation; Mutation; Osmotic Pressure; Phosphorylation; Plants, Genetically Modified; Protein Serine-Threonine Kinases; Reverse Transcriptase Polymerase Chain Reaction; Sodium Chloride; Threonine

2015
The histone methyltransferase SETDB1 represses endogenous and exogenous retroviruses in B lymphocytes.
    Proceedings of the National Academy of Sciences of the United States of America, 2015, Jul-07, Volume: 112, Issue:27

    Topics: Animals; B-Lymphocytes; Blotting, Western; Bone Marrow Cells; Cells, Cultured; DNA Methylation; Endogenous Retroviruses; Epigenesis, Genetic; Flow Cytometry; Gene Expression Profiling; Histone-Lysine N-Methyltransferase; Histones; Host-Pathogen Interactions; Lysine; Methylation; Mice, Inbred C57BL; Mice, Inbred CBA; Mice, Knockout; Mice, Transgenic; Oligonucleotide Array Sequence Analysis; Precursor Cells, B-Lymphoid; Retroviridae; Reverse Transcriptase Polymerase Chain Reaction; Terminal Repeat Sequences; Virus Activation

2015
BEND3 represses rDNA transcription by stabilizing a NoRC component via USP21 deubiquitinase.
    Proceedings of the National Academy of Sciences of the United States of America, 2015, Jul-07, Volume: 112, Issue:27

    Topics: Blotting, Western; Cell Line, Tumor; Cell Nucleolus; Chromosomal Proteins, Non-Histone; DNA, Ribosomal; Gene Expression Regulation, Neoplastic; Histones; Humans; Lysine; Methylation; Microscopy, Fluorescence; Promoter Regions, Genetic; Protein Binding; Repressor Proteins; Reverse Transcriptase Polymerase Chain Reaction; RNA Interference; Sumoylation; Ubiquitin Thiolesterase

2015
A new kinetochore component CENP-W interacts with the polycomb-group protein EZH2 to promote gene silencing.
    Biochemical and biophysical research communications, 2015, Aug-14, Volume: 464, Issue:1

    Topics: Chromatin; Chromosomal Proteins, Non-Histone; Enhancer of Zeste Homolog 2 Protein; Gene Silencing; Genes, Reporter; HEK293 Cells; HeLa Cells; Histones; Humans; Kinetochores; Luciferases; Lysine; Methylation; Neoplasm Proteins; Plasmids; Polycomb Repressive Complex 2; Promoter Regions, Genetic; Protein Binding; Protein Stability; Signal Transduction; Transcription Factors; Transfection

2015
Saccharomyces cerevisiae Eukaryotic Elongation Factor 1A (eEF1A) Is Methylated at Lys-390 by a METTL21-Like Methyltransferase.
    PloS one, 2015, Volume: 10, Issue:6

    Topics: Amino Acid Sequence; DNA Modification Methylases; Humans; Lysine; Methylation; Methyltransferases; Models, Molecular; Molecular Sequence Data; Organisms, Genetically Modified; Peptide Elongation Factor 1; Protein Processing, Post-Translational; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins

2015
JMJ24 binds to RDR2 and is required for the basal level transcription of silenced loci in Arabidopsis.
    The Plant journal : for cell and molecular biology, 2015, Volume: 83, Issue:5

    Topics: Arabidopsis; Arabidopsis Proteins; DNA Methylation; Gene Expression Regulation, Plant; Gene Silencing; Jumonji Domain-Containing Histone Demethylases; Lysine; Methylation; Mutation; Nuclear Proteins; Phylogeny; Plants, Genetically Modified; RNA-Dependent RNA Polymerase; Schizosaccharomyces pombe Proteins; Terminal Repeat Sequences; Transcription, Genetic

2015
Molecular Mechanisms Mediating the Adaptive Regulation of Intestinal Riboflavin Uptake Process.
    PloS one, 2015, Volume: 10, Issue:6

    Topics: Adaptation, Physiological; Cell Line; Cell Membrane; Dietary Supplements; Enterocytes; Gene Expression Regulation; Histones; Humans; Intestinal Mucosa; Lysine; Membrane Transport Proteins; Methylation; Promoter Regions, Genetic; Real-Time Polymerase Chain Reaction; Riboflavin; RNA, Messenger; Substrate Specificity; Transcription, Genetic

2015
Histone H2B Monoubiquitination Mediated by HISTONE MONOUBIQUITINATION1 and HISTONE MONOUBIQUITINATION2 Is Involved in Anther Development by Regulating Tapetum Degradation-Related Genes in Rice.
    Plant physiology, 2015, Volume: 168, Issue:4

    Topics: Arabidopsis Proteins; Epigenesis, Genetic; Flowers; Gene Expression Regulation, Plant; Histone Code; Histones; Lysine; Methylation; Models, Biological; Mutation; Oryza; Phenotype; Plant Proteins; Seeds; Ubiquitin-Protein Ligases; Ubiquitination

2015
Phosphatidylinositol-4-phosphate 5-Kinase 1α Modulates Ribosomal RNA Gene Silencing through Its Interaction with Histone H3 Lysine 9 Trimethylation and Heterochromatin Protein HP1-α.
    The Journal of biological chemistry, 2015, Aug-21, Volume: 290, Issue:34

    Topics: Cell Cycle; Cell Line, Tumor; Cell Nucleolus; Chromobox Protein Homolog 5; Chromosomal Proteins, Non-Histone; DNA, Ribosomal; Epigenesis, Genetic; Gene Silencing; HEK293 Cells; Heterochromatin; Histones; Humans; Lysine; MCF-7 Cells; Methylation; Phosphatidylinositol 4,5-Diphosphate; Phosphotransferases (Alcohol Group Acceptor); Signal Transduction; Sumoylation

2015
The H3K4-Methyl Epigenome Regulates Leukemia Stem Cell Oncogenic Potential.
    Cancer cell, 2015, Aug-10, Volume: 28, Issue:2

    Topics: Animals; Cell Line, Tumor; Cell Transformation, Neoplastic; Cells, Cultured; Epigenesis, Genetic; Gene Expression Profiling; Gene Expression Regulation, Leukemic; HEK293 Cells; Histone-Lysine N-Methyltransferase; Histones; Humans; Interleukin Receptor Common gamma Subunit; Jumonji Domain-Containing Histone Demethylases; Leukemia; Lysine; Methylation; Mice, Inbred C57BL; Mice, Inbred NOD; Mice, Knockout; Mice, SCID; Myeloid-Lymphoid Leukemia Protein; Neoplastic Stem Cells; Nuclear Proteins; Oligonucleotide Array Sequence Analysis; Repressor Proteins; Reverse Transcriptase Polymerase Chain Reaction; RNA Interference; Transplantation, Heterologous

2015
Homocysteine Induces Collagen I Expression by Downregulating Histone Methyltransferase G9a.
    PloS one, 2015, Volume: 10, Issue:7

    Topics: Animals; Base Sequence; Cell Line; Collagen Type I; Collagen Type I, alpha 1 Chain; Down-Regulation; Histocompatibility Antigens; Histone-Lysine N-Methyltransferase; Histones; Homocysteine; Humans; Liver; Lysine; Male; Methylation; Mice; Mice, Inbred C57BL; Promoter Regions, Genetic; Repressor Proteins

2015
The Xist RNA-PRC2 complex at 20-nm resolution reveals a low Xist stoichiometry and suggests a hit-and-run mechanism in mouse cells.
    Proceedings of the National Academy of Sciences of the United States of America, 2015, Aug-04, Volume: 112, Issue:31

    Topics: Animals; Embryo, Mammalian; Embryonic Stem Cells; Enhancer of Zeste Homolog 2 Protein; Epitopes; Female; Fibroblasts; Histones; Imaging, Three-Dimensional; In Situ Hybridization, Fluorescence; Lysine; Methylation; Mice; Polycomb Repressive Complex 2; RNA, Long Noncoding; X Chromosome; X Chromosome Inactivation

2015
Identification of a functional hotspot on ubiquitin required for stimulation of methyltransferase activity on chromatin.
    Proceedings of the National Academy of Sciences of the United States of America, 2015, Aug-18, Volume: 112, Issue:33

    Topics: Amino Acid Sequence; Chromatin; Epigenesis, Genetic; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation; Methyltransferases; Mutation; Nucleosomes; Protein Binding; Protein Engineering; Protein Processing, Post-Translational; Sequence Homology, Amino Acid; Software; Structure-Activity Relationship; Surface Properties; Ubiquitin; Ubiquitination

2015
Exposure of Human Prostaspheres to Bisphenol A Epigenetically Regulates SNORD Family Noncoding RNAs via Histone Modification.
    Endocrinology, 2015, Volume: 156, Issue:11

    Topics: Benzhydryl Compounds; Cluster Analysis; CpG Islands; DNA Methylation; Dose-Response Relationship, Drug; Epigenesis, Genetic; Epithelial Cells; Estradiol; Estrogens; Estrogens, Non-Steroidal; Histone Code; Histones; Humans; Lysine; Male; Methylation; Phenols; Prostate; Prostatic Neoplasms; Reverse Transcriptase Polymerase Chain Reaction; RNA, Untranslated; Stem Cells; Transcriptome

2015
Leg regeneration is epigenetically regulated by histone H3K27 methylation in the cricket Gryllus bimaculatus.
    Development (Cambridge, England), 2015, Sep-01, Volume: 142, Issue:17

    Topics: Amino Acid Sequence; Amputation, Surgical; Animals; Body Patterning; Cell Dedifferentiation; Epigenesis, Genetic; Extremities; Genes, Insect; Gryllidae; Histones; Insect Proteins; Joints; Lysine; Methylation; Models, Biological; Molecular Sequence Data; Phenotype; Regeneration; Sequence Homology, Amino Acid; Tibia

2015
iLM-2L: A two-level predictor for identifying protein lysine methylation sites and their methylation degrees by incorporating K-gap amino acid pairs into Chou׳s general PseAAC.
    Journal of theoretical biology, 2015, Nov-21, Volume: 385

    Topics: Algorithms; Amino Acids; Animals; Computational Biology; Lysine; Methylation; Models, Biological; Protein Processing, Post-Translational; Support Vector Machine

2015
Unabridged Analysis of Human Histone H3 by Differential Top-Down Mass Spectrometry Reveals Hypermethylated Proteoforms from MMSET/NSD2 Overexpression.
    Molecular & cellular proteomics : MCP, 2016, Volume: 15, Issue:3

    Topics: Cell Line, Tumor; Epigenesis, Genetic; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Mass Spectrometry; Methylation; Multiple Myeloma; Proteome; Repressor Proteins; Up-Regulation

2016
Polycomb recruitment at the Class II transactivator gene.
    Molecular immunology, 2015, Volume: 67, Issue:2 Pt B

    Topics: Enhancer of Zeste Homolog 2 Protein; Gene Expression Regulation; Gene Knockdown Techniques; HeLa Cells; Histones; Humans; Interferon-gamma; Lysine; Methylation; Nuclear Proteins; Polycomb Repressive Complex 2; Polycomb-Group Proteins; Promoter Regions, Genetic; Protein Binding; RNA, Messenger; Trans-Activators; Transcription, Genetic; YY1 Transcription Factor

2015
Histone H3K4me3 and H3K27me3 regulatory genes control stable transmission of an epimutation in rice.
    Scientific reports, 2015, Aug-19, Volume: 5

    Topics: Alleles; DNA Methylation; DNA, Bacterial; Gene Expression Regulation, Plant; Genes, Plant; Histones; Inheritance Patterns; Lysine; Methylation; Mutation; Oryza; Plant Proteins; Plants, Genetically Modified; Tissue Culture Techniques

2015
Growth Inhibition Accompanied by MOB1 Upregulation in Human Acute Lymphoid Leukemia Cells by 3-Deazaneplanocin A.
    Biochemical genetics, 2015, Volume: 53, Issue:9-10

    Topics: Adenosine; Cell Line, Tumor; Cell Proliferation; Chemokine CXCL10; CpG Islands; Histones; Humans; Lysine; Methylation; Precursor Cell Lymphoblastic Leukemia-Lymphoma; Promoter Regions, Genetic; Up-Regulation

2015
DOT1L Activity Promotes Proliferation and Protects Cortical Neural Stem Cells from Activation of ATF4-DDIT3-Mediated ER Stress In Vitro.
    Stem cells (Dayton, Ohio), 2016, Volume: 34, Issue:1

    Topics: Activating Transcription Factor 4; Animals; Benzimidazoles; Cell Differentiation; Cell Proliferation; Cell Survival; Cells, Cultured; Cerebral Cortex; Endoplasmic Reticulum; Endoplasmic Reticulum Stress; Gene Expression Regulation; Histone-Lysine N-Methyltransferase; Histones; Lysine; Methylation; Methyltransferases; Mice; Neural Stem Cells; Neuroprotection; Transcription Factor CHOP; Transcription, Genetic

2016
Histone variant H3.3 provides the heterochromatic H3 lysine 9 tri-methylation mark at telomeres.
    Nucleic acids research, 2015, Dec-02, Volume: 43, Issue:21

    Topics: Animals; Cells, Cultured; DNA Damage; Gene Deletion; Heterochromatin; Histone Code; Histones; Lysine; Methylation; Mice; Sister Chromatid Exchange; Telomere; Transcription, Genetic

2015
The Histone Demethylase UTX Promotes Brown Adipocyte Thermogenic Program Via Coordinated Regulation of H3K27 Demethylation and Acetylation.
    The Journal of biological chemistry, 2015, Oct-09, Volume: 290, Issue:41

    Topics: Acetylation; Adipocytes, Brown; Animals; Cell Differentiation; Cell Line; Cold Temperature; CREB-Binding Protein; Enhancer of Zeste Homolog 2 Protein; Gene Expression Regulation, Enzymologic; Histone Demethylases; Histones; Ion Channels; Lipid Metabolism; Lysine; Male; Membrane Potential, Mitochondrial; Methylation; Mice; Mitochondrial Proteins; Peroxisome Proliferator-Activated Receptor Gamma Coactivator 1-alpha; Polycomb Repressive Complex 2; Promoter Regions, Genetic; Thermogenesis; Transcription Factors; Uncoupling Protein 1

2015
Epigenetic reprogramming in solid tumors: therapeutic implications of EZH2 gain-of-function mutations.
    Epigenomics, 2015, Volume: 7, Issue:5

    Topics: Enhancer of Zeste Homolog 2 Protein; Enzyme Inhibitors; Epigenesis, Genetic; Gene Expression Regulation, Enzymologic; Gene Expression Regulation, Neoplastic; Histones; Humans; Lysine; Methylation; Molecular Targeted Therapy; Mutation; Neoplasms; Polycomb Repressive Complex 2

2015
Nucleosome compaction facilitates HP1γ binding to methylated H3K9.
    Nucleic acids research, 2015, Dec-02, Volume: 43, Issue:21

    Topics: Chromobox Protein Homolog 5; Chromosomal Proteins, Non-Histone; Histones; Humans; Lysine; Magnesium; Methylation; Nucleosomes; Protein Binding; Protein Isoforms; Protein Multimerization

2015
Hepatitis B virus X protein induces the histone H3 lysine 9 trimethylation on the promoter of p16 gene in hepatocarcinogenesis.
    Experimental and molecular pathology, 2015, Volume: 99, Issue:3

    Topics: Carcinoma, Hepatocellular; Cell Line, Tumor; Cell Proliferation; Cell Transformation, Neoplastic; Genes, p16; Hepatitis B virus; Histones; Humans; Liver Neoplasms; Lysine; Methylation; Promoter Regions, Genetic; Trans-Activators; Viral Regulatory and Accessory Proteins

2015
All-trans retinoic acid and rapamycin normalize Hutchinson Gilford progeria fibroblast phenotype.
    Oncotarget, 2015, Oct-06, Volume: 6, Issue:30

    Topics: Antineoplastic Agents; Blotting, Western; Cell Cycle; Cell Proliferation; Cells, Cultured; DNA-Binding Proteins; Drug Synergism; Fibroblasts; Gene Expression; Histones; Humans; Lamin Type A; Lysine; Membrane Proteins; Methylation; Microscopy, Electron, Transmission; Microscopy, Fluorescence; Nuclear Proteins; Phenotype; Poly (ADP-Ribose) Polymerase-1; Poly(ADP-ribose) Polymerases; Progeria; Reverse Transcriptase Polymerase Chain Reaction; Sirolimus; Tretinoin

2015
RETRACTED: The inner centromere-shugoshin network prevents chromosomal instability.
    Science (New York, N.Y.), 2015, 09-11, Volume: 349, Issue:6253

    Topics: BRCA1 Protein; Carcinogenesis; Cell Cycle Proteins; Centromere; Chromatids; Chromatin; Chromosomal Instability; Chromosomal Proteins, Non-Histone; Chromosome Segregation; Cohesins; HeLa Cells; Histones; Humans; Kinetochores; Lysine; Methylation; Microtubules; Retinoblastoma Protein

2015
The Nrde Pathway Mediates Small-RNA-Directed Histone H3 Lysine 27 Trimethylation in Caenorhabditis elegans.
    Current biology : CB, 2015, Sep-21, Volume: 25, Issue:18

    Topics: Animals; Caenorhabditis elegans; Caenorhabditis elegans Proteins; Histones; Lysine; Methylation; RNA Interference; RNA-Binding Proteins; RNA, Double-Stranded; RNA, Helminth; RNA, Small Interfering

2015
Histone H3 Lysine 36 Trimethylation Is Established over the Xist Promoter by Antisense Tsix Transcription and Contributes to Repressing Xist Expression.
    Molecular and cellular biology, 2015, Volume: 35, Issue:22

    Topics: Animals; Cell Line; Down-Regulation; Female; Histones; Lysine; Male; Methylation; Mice; Mutation; Promoter Regions, Genetic; RNA, Long Noncoding; Transcription, Genetic; X Chromosome Inactivation

2015
Late stage modification of receptors identified from dynamic combinatorial libraries.
    Organic & biomolecular chemistry, 2015, Nov-28, Volume: 13, Issue:44

    Topics: Arginine; Binding Sites; Biotinylation; Combinatorial Chemistry Techniques; Glycine; Lysine; Magnetic Resonance Spectroscopy; Methylation; Models, Molecular; Peptides; Protein Processing, Post-Translational; Small Molecule Libraries

2015
The DNA methylation landscape of human melanoma.
    Genomics, 2015, Volume: 106, Issue:6

    Topics: Cell Differentiation; DNA Methylation; Gene Expression Profiling; High-Throughput Nucleotide Sequencing; Histones; Humans; Immunity; Lysine; Melanocytes; Melanoma; Methylation; Transcription Initiation Site

2015
Early enhancer establishment and regulatory locus complexity shape transcriptional programs in hematopoietic differentiation.
    Nature genetics, 2015, Volume: 47, Issue:11

    Topics: Animals; Cell Differentiation; Cell Lineage; Enhancer Elements, Genetic; Gene Expression Regulation; Hematopoiesis; Hematopoietic Stem Cells; Histones; Humans; Lysine; Methylation; Models, Genetic; Promoter Regions, Genetic; Regression Analysis; Time Factors

2015
Nucleosome competition reveals processive acetylation by the SAGA HAT module.
    Proceedings of the National Academy of Sciences of the United States of America, 2015, Oct-06, Volume: 112, Issue:40

    Topics: Acetylation; Blotting, Western; Histone Acetyltransferases; Histones; Kinetics; Lysine; Methylation; Models, Biological; Nucleosomes; Promoter Regions, Genetic; Protein Binding; Protein Subunits; Schizosaccharomyces pombe Proteins

2015
Dot1l deficiency leads to increased intercalated cells and upregulation of V-ATPase B1 in mice.
    Experimental cell research, 2016, 06-10, Volume: 344, Issue:2

    Topics: Animals; Anion Exchange Protein 1, Erythrocyte; Aquaporin 2; Aquaporin 3; Down-Regulation; Fluorescent Antibody Technique; Histone-Lysine N-Methyltransferase; Histones; Kidney; Lysine; Methylation; Methyltransferases; Mice; Promoter Regions, Genetic; RNA, Messenger; Up-Regulation; Vacuolar Proton-Translocating ATPases

2016
Methylation of histone H3 lysine 9 occurs during translation.
    Nucleic acids research, 2015, Oct-30, Volume: 43, Issue:19

    Topics: HeLa Cells; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation; Protein Biosynthesis; Protein Methyltransferases; Protein Processing, Post-Translational; Ribosomes

2015
Changes in tri-methylation profile of lysines 4 and 27 of histone H3 in bovine blastocysts after cryopreservation.
    Cryobiology, 2015, Volume: 71, Issue:3

    Topics: Animals; Blastocyst; Cattle; Cryopreservation; Embryo Transfer; Embryo, Mammalian; Ethylene Glycol; Female; Fertilization in Vitro; Freezing; Histones; Lysine; Methylation; Pregnancy

2015
Histone lysine methylation exhibits a distinct distribution during spermatogenesis in pigs.
    Theriogenology, 2015, Volume: 84, Issue:9

    Topics: Animals; Epigenesis, Genetic; Gene Expression Regulation; Histones; Lysine; Male; Methylation; Spermatogenesis; Spermatogonia; Swine; Testis

2015
Partitioning heritability by functional annotation using genome-wide association summary statistics.
    Nature genetics, 2015, Volume: 47, Issue:11

    Topics: Algorithms; Computer Simulation; Disease; Female; Gene Frequency; Genetic Predisposition to Disease; Genome-Wide Association Study; Histones; Humans; Inheritance Patterns; Lysine; Male; Methylation; Models, Genetic; Polymorphism, Single Nucleotide

2015
The Role of Electrostatic Interactions in Binding of Histone H3K4me2/3 to the Sgf29 Tandem Tudor Domain.
    PloS one, 2015, Volume: 10, Issue:9

    Topics: Acetyltransferases; Aspartic Acid; Histones; Lysine; Methylation; Models, Molecular; Protein Binding; Protein Structure, Tertiary; Static Electricity; Thermodynamics

2015
Regulation of Retinal Development via the Epigenetic Modification of Histone H3.
    Advances in experimental medicine and biology, 2016, Volume: 854

    Topics: Animals; Enhancer of Zeste Homolog 2 Protein; Epigenesis, Genetic; Gene Expression Regulation, Developmental; Histone Demethylases; Histones; Jumonji Domain-Containing Histone Demethylases; Lysine; Methylation; Mice, Inbred ICR; Polycomb Repressive Complex 2; Retina; Reverse Transcriptase Polymerase Chain Reaction; RNA Interference

2016
The SET Domain Is Essential for Metnase Functions in Replication Restart and the 5' End of SS-Overhang Cleavage.
    PloS one, 2015, Volume: 10, Issue:10

    Topics: Base Sequence; DNA Damage; DNA End-Joining Repair; DNA Replication; DNA, Single-Stranded; HEK293 Cells; Histone-Lysine N-Methyltransferase; Histones; Humans; Hydroxyurea; Lysine; Methylation; Molecular Sequence Data; Oxidoreductases, N-Demethylating; Protein Processing, Post-Translational; Protein Structure, Tertiary; Recombinant Fusion Proteins; Sequence Deletion

2015
The PZP Domain of AF10 Senses Unmodified H3K27 to Regulate DOT1L-Mediated Methylation of H3K79.
    Molecular cell, 2015, Oct-15, Volume: 60, Issue:2

    Topics: Binding Sites; Carcinogenesis; Cell Line, Tumor; Chromatin; Crystallography, X-Ray; Gene Expression Regulation, Leukemic; Histone-Lysine N-Methyltransferase; Histones; Humans; Hydrogen Bonding; Leukocytes; Lysine; Methylation; Methyltransferases; Models, Molecular; Protein Binding; Protein Interaction Domains and Motifs; Signal Transduction; Transcription Factors

2015
Inhibition of H3K9 histone methyltransferase G9a attenuates renal fibrosis and retains klotho expression.
    Kidney international, 2016, Volume: 89, Issue:1

    Topics: Actins; Animals; Antibodies, Neutralizing; Azepines; Cell Line; Enzyme Inhibitors; Fibroblasts; Fibronectins; Fibrosis; Glomerulonephritis, IGA; Glucuronidase; Histocompatibility Antigens; Histone-Lysine N-Methyltransferase; Histones; Humans; Kidney; Klotho Proteins; Lysine; Male; Methylation; Mice; Quinazolines; Rats; RNA, Messenger; RNA, Small Interfering; Transforming Growth Factor beta1; Ureteral Obstruction

2016
Alternative transcription initiation leads to expression of a novel ALK isoform in cancer.
    Nature, 2015, Oct-15, Volume: 526, Issue:7573

    Topics: Alleles; Anaplastic Lymphoma Kinase; Animals; Cell Line, Tumor; Cell Proliferation; Cell Transformation, Neoplastic; Female; Gene Expression Regulation, Neoplastic; HEK293 Cells; Histones; Humans; Introns; Isoenzymes; Lysine; Methylation; Mice; Molecular Sequence Data; Molecular Weight; Neoplasms; NIH 3T3 Cells; Oncogenes; Protein Structure, Tertiary; Receptor Protein-Tyrosine Kinases; RNA Polymerase II; RNA, Messenger; Signal Transduction; Transcription Initiation, Genetic

2015
Hsp70 (HSPA1) Lysine Methylation Status as a Potential Prognostic Factor in Metastatic High-Grade Serous Carcinoma.
    PloS one, 2015, Volume: 10, Issue:10

    Topics: Adult; Aged; Aged, 80 and over; Biomarkers, Tumor; Breast Neoplasms; Female; HSP70 Heat-Shock Proteins; Humans; Kaplan-Meier Estimate; Lysine; Methylation; Middle Aged; Neoplasm Grading; Neoplasms, Cystic, Mucinous, and Serous; Ovarian Neoplasms; Prognosis; Proportional Hazards Models; Protein Processing, Post-Translational

2015
Sulforaphane modulates telomerase activity via epigenetic regulation in prostate cancer cell lines.
    Biochemistry and cell biology = Biochimie et biologie cellulaire, 2016, Volume: 94, Issue:1

    Topics: Acetylation; Cell Line, Tumor; Chromatin; Chromatin Immunoprecipitation; Epigenesis, Genetic; Histone Deacetylase Inhibitors; Histones; Humans; Isothiocyanates; Lysine; Male; Methyl-CpG-Binding Protein 2; Methylation; Nucleosomes; Phytochemicals; Promoter Regions, Genetic; Prostatic Neoplasms; Protein Processing, Post-Translational; Sulfoxides; Telomerase; Transcription, Genetic

2016
H3K23me2 is a new heterochromatic mark in Caenorhabditis elegans.
    Nucleic acids research, 2015, Nov-16, Volume: 43, Issue:20

    Topics: Acetylation; Animals; Caenorhabditis elegans; Caenorhabditis elegans Proteins; Chromosomal Proteins, Non-Histone; Co-Repressor Proteins; Embryo, Nonmammalian; Embryonic Development; Germ Cells; Heterochromatin; Histone Code; Histone Demethylases; Histones; Lysine; Methylation; Protein Processing, Post-Translational

2015
ZFP57 recognizes multiple and closely spaced sequence motif variants to maintain repressive epigenetic marks in mouse embryonic stem cells.
    Nucleic acids research, 2016, Feb-18, Volume: 44, Issue:3

    Topics: Alleles; Animals; Base Sequence; Cell Line; Chromatin Immunoprecipitation; DNA Methylation; Genomic Imprinting; Histones; Lysine; Methylation; Mice; Mice, Inbred C57BL; Mice, Knockout; Mice, Transgenic; Mouse Embryonic Stem Cells; Mutation; Nuclear Proteins; Nucleotide Motifs; Polymorphism, Single Nucleotide; Protein Binding; Repressor Proteins; Tripartite Motif-Containing Protein 28

2016
LncRNA ontology: inferring lncRNA functions based on chromatin states and expression patterns.
    Oncotarget, 2015, Nov-24, Volume: 6, Issue:37

    Topics: Algorithms; Cell Line; Cell Line, Tumor; Cells, Cultured; Chromatin; Gene Expression Profiling; Gene Ontology; Gene Regulatory Networks; HeLa Cells; Hep G2 Cells; Histones; Humans; K562 Cells; Lysine; Methylation; Models, Genetic; Neoplasms; Promoter Regions, Genetic; RNA, Long Noncoding; RNA, Messenger; Transcription Initiation Site

2015
Natural variation of H3K27me3 modification in two Arabidopsis accessions and their hybrid.
    Journal of integrative plant biology, 2016, Volume: 58, Issue:5

    Topics: Alleles; Arabidopsis; Arabidopsis Proteins; Crosses, Genetic; Ecotype; Gene Expression Regulation, Plant; Genetic Variation; Genome, Plant; Histones; Homeodomain Proteins; Hybridization, Genetic; Lysine; Methylation; Mutation; Transcriptome

2016
Mutual regulation between CHD5 and EZH2 in hepatocellular carcinoma.
    Oncotarget, 2015, Dec-01, Volume: 6, Issue:38

    Topics: Blotting, Western; Carcinoma, Hepatocellular; Cell Line, Tumor; Cell Movement; Chi-Square Distribution; DNA Helicases; Enhancer of Zeste Homolog 2 Protein; Epigenesis, Genetic; Female; Gene Expression Regulation, Neoplastic; Histones; Humans; Kaplan-Meier Estimate; Liver Neoplasms; Lysine; Male; Methylation; Middle Aged; Nerve Tissue Proteins; Polycomb Repressive Complex 2; Promoter Regions, Genetic; Protein Binding; Reverse Transcriptase Polymerase Chain Reaction

2015
Lysine Methylation of the Valosin-Containing Protein (VCP) Is Dispensable for Development and Survival of Mice.
    PloS one, 2015, Volume: 10, Issue:11

    Topics: Adenosine Triphosphatases; Animals; Cell Cycle Proteins; Female; Fertility; Gene Expression Regulation, Developmental; Gene Knockout Techniques; Growth and Development; Humans; Lysine; Male; Methylation; Methyltransferases; Mice; Phenotype; Substrate Specificity; Survival Analysis; Valosin Containing Protein

2015
Novel N-terminal and Lysine Methyltransferases That Target Translation Elongation Factor 1A in Yeast and Human.
    Molecular & cellular proteomics : MCP, 2016, Volume: 15, Issue:1

    Topics: Chromatography, Liquid; Electrophoresis, Polyacrylamide Gel; Lysine; Mass Spectrometry; Methylation; Methyltransferases; Mutation; Peptide Elongation Factor 1; Protein Processing, Post-Translational; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins

2016
Histone chaperone CAF-1 mediates repressive histone modifications to protect preimplantation mouse embryos from endogenous retrotransposons.
    Proceedings of the National Academy of Sciences of the United States of America, 2015, Nov-24, Volume: 112, Issue:47

    Topics: Animals; Blastocyst; Cell Nucleus; Chromatin Assembly Factor-1; Chromatin Immunoprecipitation; Female; Gene Knockdown Techniques; Genes, Dominant; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Histones; Lysine; Male; Methylation; Mice; Mouse Embryonic Stem Cells; Mutation; Promoter Regions, Genetic; Protein Processing, Post-Translational; Retroelements; Reverse Transcriptase Inhibitors; RNA, Messenger; RNA, Small Interfering

2015
Histone methylation levels correlate with TGFBIp and extracellular matrix gene expression in normal and granular corneal dystrophy type 2 corneal fibroblasts.
    BMC medical genomics, 2015, Nov-09, Volume: 8

    Topics: Cornea; Corneal Dystrophies, Hereditary; Extracellular Matrix; Extracellular Matrix Proteins; Fibroblasts; Gene Expression Regulation; Gene Knockdown Techniques; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Histones; Homozygote; Humans; Lysine; Methylation; Myeloid-Lymphoid Leukemia Protein; Protein Transport; Smad3 Protein; Transcription, Genetic; Transforming Growth Factor beta; Transforming Growth Factor beta1

2015
Aberrant intracellular localization of H3k4me3 demonstrates an early epigenetic phenomenon in Alzheimer's disease.
    Neurobiology of aging, 2015, Volume: 36, Issue:12

    Topics: Aged; Aged, 80 and over; Alzheimer Disease; Epigenesis, Genetic; Female; Gene Expression; Histones; Humans; Lysine; Male; Methylation; Middle Aged; Transcription, Genetic; Transcriptional Activation

2015
Analysis of JmjC Demethylase-Catalyzed Demethylation Using Geometrically-Constrained Lysine Analogues.
    ACS chemical biology, 2016, Mar-18, Volume: 11, Issue:3

    Topics: Binding Sites; Catalysis; Jumonji Domain-Containing Histone Demethylases; Lysine; Methylation; Substrate Specificity

2016
Superresolution imaging reveals structurally distinct periodic patterns of chromatin along pachytene chromosomes.
    Proceedings of the National Academy of Sciences of the United States of America, 2015, Nov-24, Volume: 112, Issue:47

    Topics: Animals; Centromere; Chromatin; Chromosomes, Mammalian; Histones; Lysine; Methylation; Mice; Microscopy; Models, Biological; Pachytene Stage; Synaptonemal Complex; Transcription, Genetic

2015
Site-specific methylation and acetylation of lysine residues in the C-terminal domain (CTD) of RNA polymerase II.
    Transcription, 2015, Volume: 6, Issue:5

    Topics: Acetylation; Antibodies, Monoclonal; Cell Line; Gene Expression Regulation; Humans; Lysine; Mass Spectrometry; Methylation; Models, Molecular; Protein Structure, Tertiary; RNA Polymerase II; Transcription Initiation, Genetic

2015
The metabolome regulates the epigenetic landscape during naive-to-primed human embryonic stem cell transition.
    Nature cell biology, 2015, Volume: 17, Issue:12

    Topics: Animals; Blotting, Western; Cell Differentiation; Cells, Cultured; Embryonic Stem Cells; Epigenesis, Genetic; Gas Chromatography-Mass Spectrometry; Gene Expression Profiling; Gene Knockdown Techniques; Histones; Human Embryonic Stem Cells; Humans; Lysine; Mass Spectrometry; Metabolome; Metabolomics; Methylation; Mice; Niacinamide; Nicotinamide N-Methyltransferase; Proteomics; Reverse Transcriptase Polymerase Chain Reaction; S-Adenosylmethionine; Signal Transduction

2015
Cavitands Endow All-Dielectric Beads With Selectivity for Plasmon-Free Enhanced Raman Detection of Nε-Methylated Lysine.
    ACS applied materials & interfaces, 2016, 06-22, Volume: 8, Issue:24

    Topics: Ethers, Cyclic; Lysine; Methylation; Resorcinols; Silicon Dioxide; Spectrum Analysis, Raman

2016
Chemical basis for the recognition of trimethyllysine by epigenetic reader proteins.
    Nature communications, 2015, Nov-18, Volume: 6

    Topics: Acetyltransferases; Amino Acids, Aromatic; Antigens, Nuclear; Calorimetry; Crystallography, X-Ray; Epigenesis, Genetic; Histone Code; Histones; Humans; Jumonji Domain-Containing Histone Demethylases; Lysine; Methylation; Models, Molecular; Molecular Dynamics Simulation; Nerve Tissue Proteins; Quaternary Ammonium Compounds; Retinoblastoma-Binding Protein 2; TATA-Binding Protein Associated Factors; Transcription Factor TFIID; Transcription Factors

2015
Linker histone H1.2 establishes chromatin compaction and gene silencing through recognition of H3K27me3.
    Scientific reports, 2015, Nov-19, Volume: 5

    Topics: Cell Line, Tumor; Cell Proliferation; Chromatin; Enhancer of Zeste Homolog 2 Protein; Gene Silencing; Genetic Loci; Histones; Humans; Lysine; Methylation; Nucleosomes; Polycomb Repressive Complex 2; Protein Binding; Transcription, Genetic

2015
Global mapping of the regulatory interactions of histone residues.
    FEBS letters, 2015, Dec-21, Volume: 589, Issue:24 Pt B

    Topics: Acetylation; Acetyltransferases; Chromatin Assembly and Disassembly; Databases, Nucleic Acid; Gene Expression Profiling; Gene Expression Regulation, Bacterial; Histone-Lysine N-Methyltransferase; Histones; Jumonji Domain-Containing Histone Demethylases; Lysine; Methylation; Methyltransferases; Nucleosomes; Oligonucleotide Array Sequence Analysis; Point Mutation; Protein Interaction Mapping; Protein Processing, Post-Translational; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins; Transcription, Genetic

2015
Inhibiting WEE1 Selectively Kills Histone H3K36me3-Deficient Cancers by dNTP Starvation.
    Cancer cell, 2015, Nov-09, Volume: 28, Issue:5

    Topics: Amino Acid Sequence; Animals; Base Sequence; Blotting, Western; Cell Cycle Proteins; Cell Line, Tumor; Cell Survival; Gene Expression Regulation, Neoplastic; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation; Mice, Inbred BALB C; Mice, Nude; Molecular Sequence Data; Neoplasms; Nuclear Proteins; Nucleotides; Protein-Tyrosine Kinases; Pyrazoles; Pyrimidines; Pyrimidinones; Reverse Transcriptase Polymerase Chain Reaction; Ribonucleoside Diphosphate Reductase; RNA Interference; Sequence Homology, Amino Acid; Sequence Homology, Nucleic Acid; Xenograft Model Antitumor Assays

2015
Quantitative Histone Mass Spectrometry Identifies Elevated Histone H3 Lysine 27 (Lys27) Trimethylation in Melanoma.
    Molecular & cellular proteomics : MCP, 2016, Volume: 15, Issue:3

    Topics: Cadherins; Cell Line, Tumor; Core Binding Factor Alpha 1 Subunit; Enhancer of Zeste Homolog 2 Protein; Epigenesis, Genetic; Gene Expression Regulation, Neoplastic; Histones; Humans; Lysine; Mass Spectrometry; Methylation; Multiple Myeloma; Neoplasm Metastasis; Protein Processing, Post-Translational; Up-Regulation

2016
Dynamically reorganized chromatin is the key for the reprogramming of somatic cells to pluripotent cells.
    Scientific reports, 2015, Dec-07, Volume: 5

    Topics: Animals; Ascorbic Acid; Cellular Reprogramming; Chromatin; CpG Islands; Gene Expression Regulation; Histones; Induced Pluripotent Stem Cells; Lysine; Methylation; Mice; Nucleosomes; Promoter Regions, Genetic; Transcriptome

2015
The Dynamics and Regulatory Mechanism of Pronuclear H3k9me2 Asymmetry in Mouse Zygotes.
    Scientific reports, 2015, Dec-07, Volume: 5

    Topics: Animals; Azepines; Cell Nucleus; Fertilization in Vitro; Histone-Lysine N-Methyltransferase; Histones; Kruppel-Like Transcription Factors; Lysine; Methylation; Mice; Microinjections; Models, Biological; Nerve Tissue Proteins; Quinazolines; RNA, Small Interfering; Zygote

2015
ASXL2 promotes proliferation of breast cancer cells by linking ERα to histone methylation.
    Oncogene, 2016, 07-14, Volume: 35, Issue:28

    Topics: Animals; Biomarkers, Tumor; Blotting, Western; Breast Neoplasms; Cell Proliferation; DNA-Binding Proteins; Estrogen Receptor alpha; Female; Gene Expression Profiling; Gene Expression Regulation, Neoplastic; HEK293 Cells; Histone Demethylases; Histones; Humans; Lysine; MCF-7 Cells; Methylation; Mice, Inbred BALB C; Mice, Nude; Neoplasm Proteins; Prognosis; Protein Binding; Repressor Proteins; Reverse Transcriptase Polymerase Chain Reaction; Transplantation, Heterologous

2016
JMJ704 positively regulates rice defense response against Xanthomonas oryzae pv. oryzae infection via reducing H3K4me2/3 associated with negative disease resistance regulators.
    BMC plant biology, 2015, Dec-09, Volume: 15

    Topics: Blotting, Western; Disease Resistance; Gene Expression Profiling; Gene Expression Regulation, Plant; Gene Knockdown Techniques; Genes, Plant; Histones; Lysine; Methylation; Mutation; Oryza; Plant Diseases; Plant Proteins; Real-Time Polymerase Chain Reaction; Sequence Analysis, RNA; Time Factors; Xanthomonas

2015
Analysis of histone modifications at human ribosomal DNA in liver cancer cell.
    Scientific reports, 2015, Dec-11, Volume: 5

    Topics: Blotting, Western; CCCTC-Binding Factor; Chromatin Immunoprecipitation; DNA, Ribosomal; Gene Expression Regulation, Neoplastic; Hep G2 Cells; Histone Code; Histones; Humans; Liver Neoplasms; Lysine; Methylation; Pol1 Transcription Initiation Complex Proteins; Promoter Regions, Genetic; Protein Processing, Post-Translational; Repressor Proteins; Reverse Transcriptase Polymerase Chain Reaction; RNA Interference

2015
Type 2 cannabinoid receptor contributes to the physiological regulation of spermatogenesis.
    FASEB journal : official publication of the Federation of American Societies for Experimental Biology, 2016, Volume: 30, Issue:4

    Topics: Animals; Blotting, Western; Cannabinoids; Cell Differentiation; Cells, Cultured; Gene Expression; Histone-Lysine N-Methyltransferase; Histones; Indoles; Lysine; Male; Meiosis; Methylation; Mice; Microscopy, Fluorescence; Promoter Regions, Genetic; Receptor, Cannabinoid, CB2; Reverse Transcriptase Polymerase Chain Reaction; Signal Transduction; Spermatogenesis; Spermatogonia; Tretinoin

2016
Pseudomonas aeruginosa EftM Is a Thermoregulated Methyltransferase.
    The Journal of biological chemistry, 2016, Feb-12, Volume: 291, Issue:7

    Topics: Amino Acid Substitution; Bacterial Proteins; Binding Sites; Computational Biology; Enzyme Stability; Isoenzymes; Lysine; Methylation; Models, Molecular; Mutation; Peptide Elongation Factor Tu; Protein Conformation; Protein Methyltransferases; Protein Processing, Post-Translational; Protein Unfolding; Pseudomonas aeruginosa; Recombinant Fusion Proteins; S-Adenosylmethionine; Sequence Homology, Amino Acid; Substrate Specificity; Temperature

2016
Identification of the Post-translational Modifications Present in Centromeric Chromatin.
    Molecular & cellular proteomics : MCP, 2016, Volume: 15, Issue:3

    Topics: Autoantigens; Cell Cycle; Centromere; Centromere Protein A; Chromosomal Proteins, Non-Histone; DNA-Binding Proteins; HeLa Cells; Histones; Humans; Lysine; Methylation; Nucleosomes; Protein Processing, Post-Translational; Serine; Spectrometry, Mass, Electrospray Ionization

2016
Methylation of RNA polymerase II non-consensus Lysine residues marks early transcription in mammalian cells.
    eLife, 2015, Dec-19, Volume: 4

    Topics: Animals; Consensus; Gene Expression Regulation; Lysine; Methylation; Mice; NIH 3T3 Cells; Phosphorylation; Protein Processing, Post-Translational; RNA Polymerase II; Serine; Transcription, Genetic

2015
Myocardin-related transcription factor A (MRTF-A) plays an essential role in hepatic stellate cell activation by epigenetically modulating TGF-β signaling.
    The international journal of biochemistry & cell biology, 2016, Volume: 71

    Topics: Animals; Cell Line; Epigenesis, Genetic; Hepatic Stellate Cells; Histones; Liver Cirrhosis; Lysine; Male; Methylation; Mice; Promoter Regions, Genetic; Rats; Signal Transduction; Trans-Activators; Transcriptional Activation; Transforming Growth Factor beta

2016
Reader interactome of epigenetic histone marks in birds.
    Proteomics, 2016, Volume: 16, Issue:3

    Topics: Amino Acid Sequence; Animals; Avian Proteins; Cell Line; Chickens; Chromatin; Epigenesis, Genetic; Finches; Histone Code; Histones; Humans; Lysine; Methylation; Molecular Sequence Data; Polycomb-Group Proteins; Protein Interaction Mapping; Protein Processing, Post-Translational; Proteomics; Sequence Alignment; Transcription Factors; Transposases; Zinc Fingers

2016
Epigenetic Regulation of Vegetative Phase Change in Arabidopsis.
    The Plant cell, 2016, Volume: 28, Issue:1

    Topics: Acetylation; Arabidopsis; Arabidopsis Proteins; Epigenesis, Genetic; Gene Expression Regulation, Plant; Histones; Lysine; Methylation; MicroRNAs; Nucleosomes; Protein Binding; Repressor Proteins; Transcription, Genetic

2016
SET8 induces epithelial‑mesenchymal transition and enhances prostate cancer cell metastasis by cooperating with ZEB1.
    Molecular medicine reports, 2016, Volume: 13, Issue:2

    Topics: Cadherins; Cell Line, Tumor; Epithelial-Mesenchymal Transition; Gene Expression Regulation, Neoplastic; Gene Knockdown Techniques; Histone-Lysine N-Methyltransferase; Histones; Homeodomain Proteins; Humans; Lysine; Male; Methylation; Neoplasm Metastasis; Prostatic Neoplasms; Protein Binding; Transcription Factors; Transcription, Genetic; Vimentin; Zinc Finger E-box-Binding Homeobox 1

2016
Epigenomic Landscape of Human Fetal Brain, Heart, and Liver.
    The Journal of biological chemistry, 2016, Feb-26, Volume: 291, Issue:9

    Topics: Aborted Fetus; Biomarkers; Brain; China; Chromatin; Databases, Nucleic Acid; Epigenesis, Genetic; Gene Expression Regulation, Developmental; Gene Ontology; Genomic Library; Heart; High-Throughput Nucleotide Sequencing; Histones; Humans; Liver; Lysine; Methylation; Myocardium; Organ Specificity; Protein Processing, Post-Translational; Sequence Analysis, DNA; Species Specificity

2016
HDAC inhibitors induce global changes in histone lysine and arginine methylation and alter expression of lysine demethylases.
    Journal of proteomics, 2016, Feb-05, Volume: 133

    Topics: Arginine; Gene Expression Regulation, Enzymologic; HEK293 Cells; Histone Deacetylase Inhibitors; Histone Demethylases; Histones; Humans; K562 Cells; Lysine; Methylation; Tandem Mass Spectrometry

2016
Regulation of Methyllysine Readers through Phosphorylation.
    ACS chemical biology, 2016, Mar-18, Volume: 11, Issue:3

    Topics: Binding Sites; Chromatin; Epigenesis, Genetic; Histones; Humans; Lysine; Methylation; Models, Molecular; Nuclear Proteins; Phosphorylation; Protein Binding; Protein Conformation; Protein Processing, Post-Translational

2016
Histone Deacetylase 1 (HDAC1) Negatively Regulates Thermogenic Program in Brown Adipocytes via Coordinated Regulation of Histone H3 Lysine 27 (H3K27) Deacetylation and Methylation.
    The Journal of biological chemistry, 2016, Feb-26, Volume: 291, Issue:9

    Topics: Acetylation; Adipocytes, Brown; Adrenergic beta-3 Receptor Agonists; Animals; Cell Line, Transformed; Enhancer of Zeste Homolog 2 Protein; Gene Expression Regulation; Histone Deacetylase 1; Histones; Humans; Ion Channels; Lysine; Methylation; Mice, Inbred Strains; Mitochondrial Proteins; Peroxisome Proliferator-Activated Receptor Gamma Coactivator 1-alpha; Polycomb Repressive Complex 1; Polycomb Repressive Complex 2; Promoter Regions, Genetic; Protein Processing, Post-Translational; Recombinant Proteins; RNA Interference; Thermogenesis; Transcription Factors; Ubiquitin-Protein Ligases; Uncoupling Protein 1

2016
Quantitative Profiling of the Activity of Protein Lysine Methyltransferase SMYD2 Using SILAC-Based Proteomics.
    Molecular & cellular proteomics : MCP, 2016, Volume: 15, Issue:3

    Topics: Amino Acid Motifs; Benzamides; Carcinoma, Squamous Cell; Cell Culture Techniques; Cell Line, Tumor; Esophageal Neoplasms; Esophageal Squamous Cell Carcinoma; Gene Expression Regulation, Neoplastic; Histone-Lysine N-Methyltransferase; Humans; Isotope Labeling; Lysine; Mass Spectrometry; Methylation; Proteome; Proteomics; Pyrrolidines; Substrate Specificity

2016
Genome-wide profiling of histone H3 lysine 27 and lysine 4 trimethylation in multiple myeloma reveals the importance of Polycomb gene targeting and highlights EZH2 as a potential therapeutic target.
    Oncotarget, 2016, Feb-09, Volume: 7, Issue:6

    Topics: Chromatin; Down-Regulation; Enhancer of Zeste Homolog 2 Protein; Enzyme Inhibitors; Gene Expression Profiling; Histones; Humans; Lysine; Methylation; Molecular Targeted Therapy; Multiple Myeloma; Polycomb-Group Proteins

2016
Hypoacetylation, hypomethylation, and dephosphorylation of H2B histones and excessive histone deacetylase activity in DU-145 prostate cancer cells.
    Journal of hematology & oncology, 2016, Jan-12, Volume: 9

    Topics: Acetylation; Amino Acid Sequence; Butyric Acid; Cell Line; Cell Line, Tumor; Chromatography, Liquid; Histone Deacetylase Inhibitors; Histone Deacetylases; Histones; Humans; Lysine; Male; Methylation; Molecular Sequence Data; Phosphorylation; Prostatic Neoplasms; Protein Processing, Post-Translational; Tandem Mass Spectrometry; Threonine

2016
Transition state for the NSD2-catalyzed methylation of histone H3 lysine 36.
    Proceedings of the National Academy of Sciences of the United States of America, 2016, Feb-02, Volume: 113, Issue:5

    Topics: Catalysis; HeLa Cells; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation; Models, Molecular; Repressor Proteins

2016
Yin Yang 1-mediated epigenetic silencing of tumour-suppressive microRNAs activates nuclear factor-κB in hepatocellular carcinoma.
    The Journal of pathology, 2016, Volume: 238, Issue:5

    Topics: Animals; Apoptosis; Binding Sites; Carcinoma, Hepatocellular; Cell Line, Tumor; Cell Proliferation; DNA Methylation; Enhancer of Zeste Homolog 2 Protein; Gene Expression Regulation, Neoplastic; Gene Silencing; Histones; Humans; Liver Neoplasms; Lysine; Methylation; Mice, Nude; Mice, Transgenic; MicroRNAs; NF-kappa B; Polycomb Repressive Complex 2; Promoter Regions, Genetic; RNA Interference; Signal Transduction; Time Factors; Trans-Activators; Transfection; Tumor Burden; Up-Regulation; Viral Regulatory and Accessory Proteins; YY1 Transcription Factor

2016
A Mouse Model of X-linked Intellectual Disability Associated with Impaired Removal of Histone Methylation.
    Cell reports, 2016, Feb-09, Volume: 14, Issue:5

    Topics: Aggression; Animals; Brain; CpG Islands; Dendritic Spines; Disease Models, Animal; Gene Expression Regulation; Genes, X-Linked; Histone Demethylases; Histones; Intellectual Disability; Lysine; Memory; Methylation; Mice, Knockout; Oxidoreductases, N-Demethylating; Promoter Regions, Genetic; Social Behavior; Transcription, Genetic

2016
The H3K4me3/2 histone demethylase RBR-2 controls axon guidance by repressing the actin-remodeling gene wsp-1.
    Development (Cambridge, England), 2016, Mar-01, Volume: 143, Issue:5

    Topics: Actins; Alleles; Animals; Axons; Body Patterning; Caenorhabditis elegans; Caenorhabditis elegans Proteins; Catalysis; Chromatin; Chromosomal Proteins, Non-Histone; Epigenesis, Genetic; Gene Expression Regulation, Developmental; Histone Demethylases; Histones; Lysine; Methylation; Microscopy, Fluorescence; Mutation; Neurons; Protein Structure, Tertiary; Retinoblastoma-Binding Protein 2; Signal Transduction; Transgenes

2016
PAK4 Methylation by SETD6 Promotes the Activation of the Wnt/β-Catenin Pathway.
    The Journal of biological chemistry, 2016, Mar-25, Volume: 291, Issue:13

    Topics: beta Catenin; Cell Line, Tumor; Chromatin; Cloning, Molecular; Escherichia coli; Gene Expression; Gene Knockout Techniques; HEK293 Cells; Humans; Lysine; Methylation; p21-Activated Kinases; Protein Binding; Protein Methyltransferases; Protein Processing, Post-Translational; Recombinant Proteins; Transcription, Genetic; Wnt Signaling Pathway

2016
Dynamic Histone Acetylation of H3K4me3 Nucleosome Regulates MCL1 Pre-mRNA Splicing.
    Journal of cellular physiology, 2016, Volume: 231, Issue:10

    Topics: Acetylation; Cell Line, Tumor; Chromatin; Histone Acetyltransferases; Histone Deacetylases; Histones; Humans; Lysine; Methylation; Myeloid Cell Leukemia Sequence 1 Protein; Nucleosomes; Protein Processing, Post-Translational; RNA Precursors; RNA Splicing

2016
Desensitization and Incomplete Recovery of Hepatic Target Genes After Chronic Thyroid Hormone Treatment and Withdrawal in Male Adult Mice.
    Endocrinology, 2016, Volume: 157, Issue:4

    Topics: Acetylation; Animals; Gene Expression Profiling; Histones; Liver; Lysine; Male; Methylation; Mice, Inbred C57BL; Oligonucleotide Array Sequence Analysis; Reverse Transcriptase Polymerase Chain Reaction; Thyrotropin; Thyroxine; Time Factors; Transcriptome; Triiodothyronine

2016
A Novel Epigenetic Silencing Pathway Involving the Highly Conserved 5'-3' Exoribonuclease Dhp1/Rat1/Xrn2 in Schizosaccharomyces pombe.
    PLoS genetics, 2016, Volume: 12, Issue:2

    Topics: Amino Acid Sequence; Biocatalysis; Centromere; Chromosome Segregation; Conserved Sequence; DNA-Directed RNA Polymerases; Epigenesis, Genetic; Exoribonucleases; Exosomes; Gene Silencing; Genes, Mating Type, Fungal; Genetic Loci; Heterochromatin; Histones; Lysine; Methylation; Molecular Sequence Data; Mutation; Protein Binding; RNA, Messenger; Schizosaccharomyces; Schizosaccharomyces pombe Proteins; Terminator Regions, Genetic

2016
Identification of a small-molecule ligand of the epigenetic reader protein Spindlin1 via a versatile screening platform.
    Nucleic acids research, 2016, 05-19, Volume: 44, Issue:9

    Topics: Cell Cycle Proteins; Cell Line, Tumor; Epigenesis, Genetic; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Histones; HL-60 Cells; Humans; Jumonji Domain-Containing Histone Demethylases; Ligands; Lysine; Methylation; Microtubule-Associated Proteins; Phosphoproteins; Protein Binding; Protein Domains; Protein Processing, Post-Translational

2016
Regulation of Transcription Factor Yin Yang 1 by SET7/9-mediated Lysine Methylation.
    Scientific reports, 2016, Feb-23, Volume: 6

    Topics: Cell Proliferation; CRISPR-Cas Systems; HEK293 Cells; HeLa Cells; Histone-Lysine N-Methyltransferase; Humans; Lysine; Methylation; Plasmids; Protein Domains; Protein Processing, Post-Translational; Recombinant Proteins; RNA, Small Interfering; Transcription, Genetic; Transfection; YY1 Transcription Factor

2016
KMT2D regulates specific programs in heart development via histone H3 lysine 4 di-methylation.
    Development (Cambridge, England), 2016, Mar-01, Volume: 143, Issue:5

    Topics: Animals; Aorta; Cell Cycle; Echocardiography; Electrophysiology; Enhancer Elements, Genetic; Female; Gene Deletion; Gene Expression Profiling; Gene Expression Regulation, Developmental; Heart; Heart Ventricles; Histone-Lysine N-Methyltransferase; Histones; Hypoxia; Lysine; Methylation; Mice; Microscopy, Fluorescence; Myeloid-Lymphoid Leukemia Protein; Myocardium; Myocytes, Cardiac; Oxygen; Promoter Regions, Genetic; Sequence Analysis, RNA

2016
Extended string-like binding of the phosphorylated HP1α N-terminal tail to the lysine 9-methylated histone H3 tail.
    Scientific reports, 2016, Mar-03, Volume: 6

    Topics: Chromobox Protein Homolog 5; Chromosomal Proteins, Non-Histone; Histones; Humans; Lysine; Methylation; Nuclear Magnetic Resonance, Biomolecular; Phosphorylation; Protein Binding; Protein Domains

2016
CURLY LEAF Regulates Gene Sets Coordinating Seed Size and Lipid Biosynthesis.
    Plant physiology, 2016, Volume: 171, Issue:1

    Topics: Arabidopsis; Arabidopsis Proteins; Cell Size; Gene Expression Regulation, Plant; Homeodomain Proteins; Lipids; Lysine; Methylation; Polycomb Repressive Complex 2; Repressor Proteins; Seeds

2016
Uropathogenic E. coli (UPEC) Infection Induces Proliferation through Enhancer of Zeste Homologue 2 (EZH2).
    PloS one, 2016, Volume: 11, Issue:3

    Topics: Cell Line; Cell Proliferation; Enhancer of Zeste Homolog 2 Protein; Epigenesis, Genetic; Escherichia coli Infections; Histones; Humans; Lysine; Methylation; Paracrine Communication; Polycomb Repressive Complex 2; Proto-Oncogene Proteins; Uropathogenic Escherichia coli; Urothelium; Wnt Proteins; Wnt-5a Protein

2016
Pharmacological inhibition of LSD1 for the treatment of MLL-rearranged leukemia.
    Journal of hematology & oncology, 2016, Mar-12, Volume: 9

    Topics: Animals; Blotting, Western; Cell Line, Tumor; Cell Proliferation; Child; Drug Synergism; Enzyme Inhibitors; Gene Expression Regulation, Leukemic; Gene Rearrangement; Histone Demethylases; Histone-Lysine N-Methyltransferase; Histones; Humans; Leukemia; Lysine; MCF-7 Cells; Methylation; Methyltransferases; Mice, Inbred NOD; Mice, SCID; Molecular Structure; Monoamine Oxidase Inhibitors; Myeloid-Lymphoid Leukemia Protein; Reverse Transcriptase Polymerase Chain Reaction; U937 Cells; Xenograft Model Antitumor Assays

2016
Role of annexin gene and its regulation during zebrafish caudal fin regeneration.
    Wound repair and regeneration : official publication of the Wound Healing Society [and] the European Tissue Repair Society, 2016, Volume: 24, Issue:3

    Topics: Amputation, Surgical; Animal Fins; Animals; Annexins; Blotting, Western; Disease Models, Animal; Epigenesis, Genetic; Gene Expression Regulation, Developmental; Histones; Lysine; Methylation; Promoter Regions, Genetic; Real-Time Polymerase Chain Reaction; Regeneration; Zebrafish

2016
Supramolecular Affinity Chromatography for Methylation-Targeted Proteomics.
    Analytical chemistry, 2016, Apr-05, Volume: 88, Issue:7

    Topics: Animals; Calixarenes; Cattle; Chromatography, Affinity; Histones; Lysine; Methylation; Peptides; Proteomics

2016
Regulation of HIF-1α stability by lysine methylation.
    BMB reports, 2016, Volume: 49, Issue:5

    Topics: Animals; Cell Line, Tumor; Embryo, Mammalian; Fibroblasts; Humans; Hypoxia-Inducible Factor 1, alpha Subunit; Lysine; Methylation; Mice; Models, Biological; Protein Stability

2016
A positive role for polycomb in transcriptional regulation via H4K20me1.
    Cell research, 2016, Volume: 26, Issue:5

    Topics: Animals; Base Sequence; Biomarkers; Drosophila melanogaster; Drosophila Proteins; Gene Expression Regulation, Developmental; Histones; Lysine; Methylation; Nuclear Proteins; Polycomb Repressive Complex 1; Repressor Proteins; Transcription Factors; Transcription, Genetic; Wings, Animal

2016
Neuronal activity controls Bdnf expression via Polycomb de-repression and CREB/CBP/JMJD3 activation in mature neurons.
    Nature communications, 2016, Mar-24, Volume: 7

    Topics: Acetylation; Animals; Brain-Derived Neurotrophic Factor; Cell Differentiation; CREB-Binding Protein; Cyclic AMP Response Element-Binding Protein; Enhancer of Zeste Homolog 2 Protein; Epigenesis, Genetic; Gene Expression Regulation, Developmental; Hippocampus; Histones; Jumonji Domain-Containing Histone Demethylases; Long-Term Synaptic Depression; Lysine; Methylation; Models, Biological; N-Methylaspartate; Neurons; Phosphorylation; Polycomb Repressive Complex 2; Polycomb-Group Proteins; Promoter Regions, Genetic; Rats, Wistar

2016
Retrotransposon derepression leads to activation of the unfolded protein response and apoptosis in pro-B cells.
    Development (Cambridge, England), 2016, 05-15, Volume: 143, Issue:10

    Topics: Animals; Apoptosis; Gene Expression Profiling; Gene Silencing; HEK293 Cells; Histone-Lysine N-Methyltransferase; Histones; Humans; Leukemia Virus, Murine; Lysine; Methylation; Mice; Precursor Cells, B-Lymphoid; Repetitive Sequences, Nucleic Acid; Retroelements; Transcription, Genetic; Unfolded Protein Response

2016
LSD1 Mediates Neuronal Differentiation of Human Fetal Neural Stem Cells by Controlling the Expression of a Novel Target Gene, HEYL.
    Stem cells (Dayton, Ohio), 2016, Volume: 34, Issue:7

    Topics: Animals; Basic Helix-Loop-Helix Transcription Factors; Cell Differentiation; Cell Proliferation; Chromatin; Fetus; Gene Expression Regulation; Histone Demethylases; Histones; Humans; Lysine; Methylation; Mice, Inbred ICR; Neocortex; Neural Stem Cells; Neurogenesis; Neurons; Promoter Regions, Genetic; Repressor Proteins

2016
A charge-suppressing strategy for probing protein methylation.
    Chemical communications (Cambridge, England), 2016, Apr-07, Volume: 52, Issue:31

    Topics: Amino Acid Sequence; Arginine; Chromatography, Ion Exchange; Lysine; Mass Spectrometry; Methylation; Peptides; Proteins

2016
Identification and characterization of histone lysine methylation modifiers in Fragaria vesca.
    Scientific reports, 2016, Apr-06, Volume: 6

    Topics: Alternative Splicing; Databases, Protein; Epigenesis, Genetic; Fragaria; Fruit; Gene Expression Regulation, Plant; Genes, Plant; Histone Demethylases; Histones; Jumonji Domain-Containing Histone Demethylases; Lysine; Methylation; Methyltransferases; Phylogeny; Plant Proteins; Proteome; Retroelements; Transcriptome

2016
H3K4me3 Demethylase Kdm5a Is Required for NK Cell Activation by Associating with p50 to Suppress SOCS1.
    Cell reports, 2016, Apr-12, Volume: 15, Issue:2

    Topics: Animals; Base Sequence; Cell Nucleus; Chromatin; Disease Resistance; HEK293 Cells; Histones; Humans; Inflammation; Interleukin-12; Janus Kinase 2; Killer Cells, Natural; Listeria monocytogenes; Listeriosis; Lymphocyte Activation; Lysine; Methylation; Mice; NF-kappa B p50 Subunit; Phosphorylation; Promoter Regions, Genetic; Protein Transport; Retinoblastoma-Binding Protein 2; Signal Transduction; STAT4 Transcription Factor; Suppressor of Cytokine Signaling 1 Protein

2016
Unexpected Distinct Roles of the Related Histone H3 Lysine 9 Methyltransferases G9a and G9a-Like Protein in Myoblasts.
    Journal of molecular biology, 2016, 06-05, Volume: 428, Issue:11

    Topics: Animals; Cell Differentiation; Cell Line; Gene Expression; Gene Expression Profiling; Histone-Lysine N-Methyltransferase; Histones; Lysine; Methylation; Mice; Muscle Development; Myoblasts

2016
Identification and functional characterization of lysine methyltransferases of Entamoeba histolytica.
    Molecular microbiology, 2016, Volume: 101, Issue:2

    Topics: Amino Acid Sequence; Entamoeba histolytica; Epigenesis, Genetic; Histones; Lysine; Methylation; Methyltransferases; Protein Processing, Post-Translational; Trophozoites

2016
Histone H4 lysine 20 acetylation is associated with gene repression in human cells.
    Scientific reports, 2016, Apr-11, Volume: 6

    Topics: Acetylation; Animals; Antibodies, Monoclonal; Binding Sites; Chromatin Immunoprecipitation; Chromatography, High Pressure Liquid; HeLa Cells; Histones; Humans; Lysine; Methylation; Mice; Microscopy, Fluorescence; Peptides; Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization; Transcription Factors; Transcription Initiation Site

2016
Polycomb Ezh2 controls the fate of GABAergic neurons in the embryonic cerebellum.
    Development (Cambridge, England), 2016, 06-01, Volume: 143, Issue:11

    Topics: Animals; Cell Count; Cell Lineage; Cell Proliferation; Cerebellum; Enhancer of Zeste Homolog 2 Protein; GABAergic Neurons; Gene Deletion; Gene Expression Regulation, Developmental; Genetic Loci; Genome; Histones; Interneurons; Lysine; Methylation; Mice, Knockout; PAX7 Transcription Factor; Purkinje Cells; Transcription, Genetic; Tumor Suppressor Proteins

2016
Age-associated de-repression of retrotransposons in the Drosophila fat body, its potential cause and consequence.
    Aging cell, 2016, Volume: 15, Issue:3

    Topics: Aging; Animals; DNA Damage; Drosophila melanogaster; Drosophila Proteins; Fat Body; Gene Expression Regulation, Developmental; Heterochromatin; Histones; Lamins; Lysine; Methylation; Models, Biological; Retroelements

2016
Differential patterns of histone methylase EHMT2 and its catalyzed histone modifications H3K9me1 and H3K9me2 during maturation of central auditory system.
    Cell and tissue research, 2016, Volume: 365, Issue:2

    Topics: Animals; Animals, Newborn; Auditory Cortex; Auditory Pathways; Biocatalysis; Brain Stem; Down-Regulation; Hearing; Histone-Lysine N-Methyltransferase; Histones; Lysine; Methylation; Mice, Inbred C57BL; Neocortex; Neurons

2016
Dynamic and flexible H3K9me3 bridging via HP1β dimerization establishes a plastic state of condensed chromatin.
    Nature communications, 2016, Apr-19, Volume: 7

    Topics: Amino Acid Sequence; Blotting, Western; Cell Line, Tumor; Chromatin; Chromobox Protein Homolog 5; Chromosomal Proteins, Non-Histone; Crystallography, X-Ray; Heterochromatin; Histones; Humans; Kinetics; Lysine; Methylation; Microscopy, Fluorescence; Models, Molecular; Molecular Sequence Data; Nucleosomes; Protein Binding; Protein Multimerization; Sequence Homology, Amino Acid; Static Electricity

2016
Specificity of the SUV4-20H1 and SUV4-20H2 protein lysine methyltransferases and methylation of novel substrates.
    Journal of molecular biology, 2016, 06-05, Volume: 428, Issue:11

    Topics: Cell Line; HEK293 Cells; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation

2016
Engineering of Methylation State Specific 3xMBT Domain Using ELISA Screening.
    PloS one, 2016, Volume: 11, Issue:4

    Topics: Amino Acid Sequence; Biological Assay; Chromosomal Proteins, Non-Histone; Enzyme-Linked Immunosorbent Assay; Escherichia coli; Gene Expression; Humans; Lysine; Maltose-Binding Proteins; Methylation; Models, Molecular; Peptides; Protein Domains; Protein Engineering; Protein Processing, Post-Translational; Recombinant Proteins; Repressor Proteins; Small Molecule Libraries; Tumor Suppressor Proteins

2016
Epigenetic profiles signify cell fate plasticity in unipotent spermatogonial stem and progenitor cells.
    Nature communications, 2016, 04-27, Volume: 7

    Topics: Animals; Cell Differentiation; Cell Plasticity; Cells, Cultured; Embryonic Stem Cells; Epigenomics; Gene Expression Profiling; Histones; Lysine; Male; Methylation; Mice, 129 Strain; Mice, Inbred C57BL; Mice, Transgenic; Multipotent Stem Cells; Spermatogenesis; Spermatogonia

2016
Structural basis of oncogenic histone H3K27M inhibition of human polycomb repressive complex 2.
    Nature communications, 2016, 04-28, Volume: 7

    Topics: Brain Neoplasms; Carcinogenesis; Catalytic Domain; Crystallography, X-Ray; Enhancer of Zeste Homolog 2 Protein; Histones; Humans; Lysine; Methylation; Models, Molecular; Mutation; Oncogenes; Polycomb Repressive Complex 2; Protein Binding; Protein Domains

2016
Targeting EZH2-mediated methylation of H3K27 inhibits proliferation and migration of Synovial Sarcoma in vitro.
    Scientific reports, 2016, 04-29, Volume: 6

    Topics: Cell Line, Tumor; Cell Movement; Cell Proliferation; Enhancer of Zeste Homolog 2 Protein; Gene Knockdown Techniques; Histones; Humans; Lysine; Methylation; Protein Processing, Post-Translational; Sarcoma, Synovial

2016
The EZH1-SUZ12 complex positively regulates the transcription of NF-κB target genes through interaction with UXT.
    Journal of cell science, 2016, 06-15, Volume: 129, Issue:12

    Topics: Apoptosis; Cell Cycle Proteins; Cell Nucleus; Gene Expression Regulation; HCT116 Cells; Histones; Humans; Lysine; Methylation; Molecular Chaperones; Neoplasm Proteins; NF-kappa B; Polycomb Repressive Complex 2; Protein Binding; Protein Transport; RNA Polymerase II; Transcription Factor RelA; Transcription Factors; Transcription, Genetic; Tumor Necrosis Factor-alpha

2016
Multifaceted Histone H3 Methylation and Phosphorylation Readout by the Plant Homeodomain Finger of Human Nuclear Antigen Sp100C.
    The Journal of biological chemistry, 2016, Jun-10, Volume: 291, Issue:24

    Topics: Amino Acid Sequence; Antigens, Nuclear; Autoantigens; Binding Sites; Calorimetry; Crystallography, X-Ray; HeLa Cells; Histones; Humans; Hydrogen Bonding; Lysine; Methylation; Microscopy, Confocal; Models, Molecular; Mutation; Phosphorylation; Protein Binding; Protein Domains; Protein Isoforms; Sequence Homology, Amino Acid

2016
Methylation of histone H4 lysine 20 by PR-Set7 ensures the integrity of late replicating sequence domains in Drosophila.
    Nucleic acids research, 2016, 09-06, Volume: 44, Issue:15

    Topics: Animals; Cell Cycle Checkpoints; Cell Cycle Proteins; Cell Line; DNA Damage; DNA Replication; DNA Replication Timing; Drosophila melanogaster; Drosophila Proteins; Genome, Insect; Genomic Instability; Histone-Lysine N-Methyltransferase; Histones; Lysine; Methylation; Protein Serine-Threonine Kinases; Replication Origin; S Phase

2016
Multi-layered Regulation of SPL15 and Cooperation with SOC1 Integrate Endogenous Flowering Pathways at the Arabidopsis Shoot Meristem.
    Developmental cell, 2016, May-09, Volume: 37, Issue:3

    Topics: Amino Acid Sequence; Arabidopsis; Arabidopsis Proteins; Base Sequence; Flowers; Gibberellins; Histones; Lysine; MADS Domain Proteins; Mediator Complex; Meristem; Methylation; Models, Biological; Protein Binding; Time Factors; Transcription Factors; Transcriptional Activation

2016
Setd1a and NURF mediate chromatin dynamics and gene regulation during erythroid lineage commitment and differentiation.
    Nucleic acids research, 2016, 09-06, Volume: 44, Issue:15

    Topics: Animals; Antigens, Nuclear; Cell Lineage; Cells, Cultured; Chromatin; Chromatin Assembly and Disassembly; Chromatin Immunoprecipitation; Erythroblasts; Erythrocyte Count; Erythrocytes; Erythropoiesis; Female; Gene Expression Regulation; Hemoglobins; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Male; Methylation; Mice; Mice, Knockout; Micrococcal Nuclease; Multiprotein Complexes; Nerve Tissue Proteins; Promoter Regions, Genetic; Spleen; Transcription Factors; Upstream Stimulatory Factors

2016
ASH1L Links Histone H3 Lysine 36 Dimethylation to MLL Leukemia.
    Cancer discovery, 2016, Volume: 6, Issue:7

    Topics: Animals; Cell Line; Cell Transformation, Neoplastic; Chromatin Immunoprecipitation; Disease Models, Animal; DNA-Binding Proteins; F-Box Proteins; Female; Gene Expression Regulation, Leukemic; Heterografts; High-Throughput Nucleotide Sequencing; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Histones; Humans; Intercellular Signaling Peptides and Proteins; Jumonji Domain-Containing Histone Demethylases; Leukemia; Lysine; Methylation; Mice; Myeloid-Lymphoid Leukemia Protein; Nucleosomes; Promoter Regions, Genetic; Protein Binding; Transcription Factors

2016
Homeobox genes gain trimethylation of histone H3 lysine 4 in glioblastoma tissue.
    Bioscience reports, 2016, Volume: 36, Issue:3

    Topics: Brain Neoplasms; Cadherins; Chromatin Immunoprecipitation; DNA Methylation; Epigenesis, Genetic; Female; Gene Expression Regulation, Neoplastic; Genes, Homeobox; Glioblastoma; Histones; Humans; Lysine; Methylation; Middle Aged; Promoter Regions, Genetic

2016
Identification of Novel EZH2 Targets Regulating Osteogenic Differentiation in Mesenchymal Stem Cells.
    Stem cells and development, 2016, 06-15, Volume: 25, Issue:12

    Topics: Adult; Cell Differentiation; Chromatin Immunoprecipitation; Enhancer of Zeste Homolog 2 Protein; Gene Knockdown Techniques; Histones; Humans; Intracellular Signaling Peptides and Proteins; LIM Domain Proteins; Lysine; Mesenchymal Stem Cells; Methylation; Muscle Proteins; Myxovirus Resistance Proteins; Osteoblasts; Osteogenesis; Real-Time Polymerase Chain Reaction; Repressor Proteins; RNA, Small Interfering; Up-Regulation

2016
Development of a DNA-Templated Peptide Probe for Photoaffinity Labeling and Enrichment of the Histone Modification Reader Proteins.
    Angewandte Chemie (International ed. in English), 2016, 07-04, Volume: 55, Issue:28

    Topics: DNA; HeLa Cells; Histone Code; Histones; Humans; Lysine; Methylation; Peptides; Photoaffinity Labels; Photochemical Processes; Protein Processing, Post-Translational; Proteomics

2016
Histone H3K36 mutations promote sarcomagenesis through altered histone methylation landscape.
    Science (New York, N.Y.), 2016, May-13, Volume: 352, Issue:6287

    Topics: Animals; Bone Neoplasms; Carcinogenesis; Child, Preschool; Chondroblastoma; Gene Expression Regulation, Neoplastic; Histones; Humans; Lysine; Mesenchymal Stem Cells; Methionine; Methylation; Methyltransferases; Mice; Mutation; Mutation, Missense; Neoplastic Stem Cells; Nucleosomes; Polycomb Repressive Complex 1; Sarcoma

2016
The Polycomb group protein CLF emerges as a specific tri-methylase of H3K27 regulating gene expression and development in Physcomitrella patens.
    Biochimica et biophysica acta, 2016, Volume: 1859, Issue:7

    Topics: Amino Acid Sequence; Bryopsida; Gene Expression Regulation, Developmental; Gene Expression Regulation, Plant; Genes, Plant; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Histones; Homeodomain Proteins; Lysine; Methylation; Molecular Sequence Data; Plant Leaves; Plants, Genetically Modified; Polycomb-Group Proteins; Sequence Homology, Amino Acid

2016
G9a promotes proliferation and inhibits cell cycle exit during myogenic differentiation.
    Nucleic acids research, 2016, 09-30, Volume: 44, Issue:17

    Topics: Animals; Cell Cycle; Cell Differentiation; Cell Line; Cell Proliferation; E2F1 Transcription Factor; Gene Expression Regulation; Gene Knockdown Techniques; Histone-Lysine N-Methyltransferase; Histones; Lysine; Methylation; Mice, Inbred C57BL; Muscle Development; Myoblasts; MyoD Protein; p300-CBP Transcription Factors; Promoter Regions, Genetic

2016
The histone H3.3K36M mutation reprograms the epigenome of chondroblastomas.
    Science (New York, N.Y.), 2016, Jun-10, Volume: 352, Issue:6291

    Topics: Amino Acid Substitution; Bone Neoplasms; Carcinogenesis; Chondroblastoma; Epigenesis, Genetic; Genes, Neoplasm; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation; Mutation; Repressor Proteins

2016
The HIV-1 Tat Protein Is Monomethylated at Lysine 71 by the Lysine Methyltransferase KMT7.
    The Journal of biological chemistry, 2016, 07-29, Volume: 291, Issue:31

    Topics: Histone-Lysine N-Methyltransferase; HIV-1; Humans; Jurkat Cells; Lysine; Methylation; tat Gene Products, Human Immunodeficiency Virus; Transcriptional Activation

2016
Computational prediction of methylation types of covalently modified lysine and arginine residues in proteins.
    Briefings in bioinformatics, 2017, 07-01, Volume: 18, Issue:4

    Topics: Arginine; Lysine; Methylation; Protein Processing, Post-Translational; Proteins

2017
ZFP57 maintains the parent-of-origin-specific expression of the imprinted genes and differentially affects non-imprinted targets in mouse embryonic stem cells.
    Nucleic acids research, 2016, 09-30, Volume: 44, Issue:17

    Topics: Animals; Binding Sites; Cell Differentiation; CpG Islands; Epigenesis, Genetic; Gene Expression Regulation, Developmental; Genetic Loci; Genomic Imprinting; Histones; Lysine; Methylation; Mice; Models, Genetic; Mouse Embryonic Stem Cells; Nuclear Proteins; Repressor Proteins

2016
Mechanisms of histone lysine-modifying enzymes: A computational perspective on the role of the protein environment.
    Journal of molecular graphics & modelling, 2016, Volume: 67

    Topics: Acetylation; Catalytic Domain; Demethylation; Enzymes; Epigenesis, Genetic; Histone Deacetylases; Histones; Lysine; Methylation; Models, Molecular; Sirtuins; Substrate Specificity

2016
Selective inhibition of EZH2 by ZLD10A blocks H3K27 methylation and kills mutant lymphoma cells proliferation.
    Biomedicine & pharmacotherapy = Biomedecine & pharmacotherapie, 2016, Volume: 81

    Topics: Apoptosis; Benzamides; Cell Cycle Checkpoints; Cell Line, Tumor; Cell Proliferation; Cell Shape; Enhancer of Zeste Homolog 2 Protein; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Histones; Humans; Isoquinolines; Lymphoma; Lysine; Methylation; Mutation

2016
KAT7/HBO1/MYST2 Regulates CENP-A Chromatin Assembly by Antagonizing Suv39h1-Mediated Centromere Inactivation.
    Developmental cell, 2016, 06-06, Volume: 37, Issue:5

    Topics: Autoantigens; Centromere; Centromere Protein A; Chromatin Assembly and Disassembly; Chromosomal Proteins, Non-Histone; Chromosome Segregation; DNA-Binding Proteins; G1 Phase; Gene Knockout Techniques; HeLa Cells; Histone Acetyltransferases; Histones; Humans; Lysine; Methylation; Methyltransferases; Multiprotein Complexes; Nuclear Proteins; Protein Stability; Protein Subunits; Repressor Proteins; Trans-Activators

2016
Lysine demethylase KDM3A regulates breast cancer cell invasion and apoptosis by targeting histone and the non-histone protein p53.
    Oncogene, 2017, 01-05, Volume: 36, Issue:1

    Topics: Animals; Antineoplastic Agents; Apoptosis; Apoptosis Regulatory Proteins; Breast Neoplasms; Cell Line, Tumor; Cell Movement; Disease Models, Animal; Drug Resistance, Neoplasm; Epigenesis, Genetic; Female; Gene Expression; Gene Knockdown Techniques; Histones; Humans; Jumonji Domain-Containing Histone Demethylases; Lysine; Methylation; Mice; Mutation; Neoplastic Stem Cells; Promoter Regions, Genetic; Protein Binding; Proto-Oncogene Proteins; Proto-Oncogene Proteins c-bcl-2; Tumor Suppressor Protein p53

2017
Transcription factors AS1 and AS2 interact with LHP1 to repress KNOX genes in Arabidopsis.
    Journal of integrative plant biology, 2016, Volume: 58, Issue:12

    Topics: Arabidopsis; Arabidopsis Proteins; Biocatalysis; Epistasis, Genetic; Gene Expression Regulation, Plant; Genes, Plant; Genetic Loci; Histones; Homeodomain Proteins; Lysine; Methylation; Phenotype; Plant Leaves; Protein Binding; Repressor Proteins; Reproducibility of Results; RNA, Messenger; Transcription Factors

2016
Arabidopsis RNA Polymerases IV and V Are Required To Establish H3K9 Methylation, but Not Cytosine Methylation, on Geminivirus Chromatin.
    Journal of virology, 2016, 08-15, Volume: 90, Issue:16

    Topics: Arabidopsis; Arabidopsis Proteins; Chromatin; Cytosine; DNA-Directed RNA Polymerases; DNA, Viral; Geminiviridae; Histones; Lysine; Methylation

2016
PI3K/AKT Signaling Regulates H3K4 Methylation in Breast Cancer.
    Cell reports, 2016, 06-21, Volume: 15, Issue:12

    Topics: Amino Acid Sequence; Animals; Breast Neoplasms; Cell Cycle; Enzyme Activation; Female; Gene Expression Regulation, Neoplastic; Histones; Humans; Lysine; Methylation; Mice; Models, Biological; Phosphatidylinositol 3-Kinases; Promoter Regions, Genetic; Protein Transport; Proto-Oncogene Proteins c-akt; Retinoblastoma-Binding Protein 2; Subcellular Fractions; Substrate Specificity; Treatment Outcome

2016
MOF Acetylates the Histone Demethylase LSD1 to Suppress Epithelial-to-Mesenchymal Transition.
    Cell reports, 2016, 06-21, Volume: 15, Issue:12

    Topics: Acetylation; Cadherins; Cell Line, Tumor; Disease Progression; Down-Regulation; Embryo, Mammalian; Epithelial Cells; Epithelial-Mesenchymal Transition; Fibroblasts; Gene Expression Regulation, Neoplastic; Histone Acetyltransferases; Histone Demethylases; Histones; Humans; Lysine; Methylation; Multiprotein Complexes; Mutation; Neoplasm Invasiveness; Neoplasm Metastasis; Nucleosomes

2016
Protein Abundance Control by Non-coding Antisense Transcription.
    Cell reports, 2016, 06-21, Volume: 15, Issue:12

    Topics: Base Sequence; Gene Expression Regulation, Fungal; Gene Library; Histones; Lysine; Methylation; Microscopy; Proteins; Reproducibility of Results; RNA, Antisense; RNA, Fungal; RNA, Untranslated; Saccharomyces cerevisiae; Transcription Initiation Site; Transcription, Genetic

2016
SET9-Mediated Regulation of TGF-β Signaling Links Protein Methylation to Pulmonary Fibrosis.
    Cell reports, 2016, 06-21, Volume: 15, Issue:12

    Topics: Acetylation; Animals; Bleomycin; Extracellular Matrix; Gene Expression Regulation; HeLa Cells; Histone-Lysine N-Methyltransferase; Humans; Lysine; Male; Methylation; Mice, Inbred C57BL; Mice, Knockout; Models, Biological; Nuclear Proteins; Protein Methyltransferases; Protein Stability; Pulmonary Fibrosis; Signal Transduction; Smad7 Protein; Transforming Growth Factor beta; Ubiquitin-Protein Ligases; Ubiquitination

2016
EZH2 phosphorylation by JAK3 mediates a switch to noncanonical function in natural killer/T-cell lymphoma.
    Blood, 2016, 08-18, Volume: 128, Issue:7

    Topics: Cell Line, Tumor; Cell Proliferation; Enhancer of Zeste Homolog 2 Protein; Enzyme Activation; Gene Expression Regulation, Neoplastic; Histones; Humans; Janus Kinase 3; Lymphoma, T-Cell; Lysine; Methylation; Models, Biological; Natural Killer T-Cells; Neoplasm Proteins; Phosphorylation; Phosphotyrosine; Polycomb Repressive Complex 2; Protein Binding; Protein Kinase Inhibitors; Protein Subunits; RNA Polymerase II; Transcription Factors

2016
sPLA2 -IIA Overexpression in Mice Epidermis Depletes Hair Follicle Stem Cells and Induces Differentiation Mediated Through Enhanced JNK/c-Jun Activation.
    Stem cells (Dayton, Ohio), 2016, Volume: 34, Issue:9

    Topics: Aging; Animals; Cell Differentiation; Cell Proliferation; Enzyme Activation; Epidermis; ErbB Receptors; Gene Expression Profiling; Group II Phospholipases A2; Hair Follicle; Histones; Homeostasis; Hyperplasia; JNK Mitogen-Activated Protein Kinases; Keratinocytes; Lysine; Methylation; Mice, Transgenic; Parakeratosis; Proto-Oncogene Proteins c-jun; Sebaceous Glands; Signal Transduction; Stem Cells

2016
Systems Level Analysis of Histone H3 Post-translational Modifications (PTMs) Reveals Features of PTM Crosstalk in Chromatin Regulation.
    Molecular & cellular proteomics : MCP, 2016, Volume: 15, Issue:8

    Topics: Animals; Arginine; Chromatin; Chromatography, Liquid; Gene Knockout Techniques; Histones; Lysine; Methylation; Mice; Mouse Embryonic Stem Cells; Polycomb Repressive Complex 1; Polycomb Repressive Complex 2; Protein Processing, Post-Translational; Proteomics; Tandem Mass Spectrometry

2016
Correspondence: On the enzymology and significance of HSPA1 lysine methylation.
    Nature communications, 2016, 06-20, Volume: 7

    Topics: Histone-Lysine N-Methyltransferase; Histones; Lysine; Methylation; Molecular Chaperones; Protein Processing, Post-Translational

2016
Direct aqueous synthesis of cyanomethyl thioglycosides from reducing sugars; ready access to reagents for protein glycosylation.
    Organic & biomolecular chemistry, 2016, Jul-12, Volume: 14, Issue:28

    Topics: Animals; Chickens; Glycosylation; Halogenation; Indicators and Reagents; Lysine; Methylation; Models, Molecular; Muramidase; Nitriles; Oligosaccharides; Oxidation-Reduction; Proteins; Thioglycosides

2016
aKMT Catalyzes Extensive Protein Lysine Methylation in the Hyperthermophilic Archaeon Sulfolobus islandicus but is Dispensable for the Growth of the Organism.
    Molecular & cellular proteomics : MCP, 2016, Volume: 15, Issue:9

    Topics: Archaeal Proteins; Crystallography, X-Ray; Gene Deletion; Gene Expression Regulation, Archaeal; Lysine; Mass Spectrometry; Methylation; Models, Molecular; Protein Methyltransferases; Protein Structure, Secondary; Proteomics; S-Adenosylhomocysteine; S-Adenosylmethionine; Sulfolobus

2016
DOT1L as a therapeutic target for the treatment of DNMT3A-mutant acute myeloid leukemia.
    Blood, 2016, 08-18, Volume: 128, Issue:7

    Topics: Adenosine; Animals; Apoptosis; Cell Cycle Checkpoints; Cell Differentiation; Cell Line, Tumor; Cell Proliferation; DNA (Cytosine-5-)-Methyltransferases; DNA Methyltransferase 3A; Gene Expression Regulation, Leukemic; Hematopoietic Stem Cells; Histone-Lysine N-Methyltransferase; Histones; Humans; Leukemia, Myeloid, Acute; Lysine; Methylation; Methyltransferases; Mice, Inbred C57BL; Molecular Targeted Therapy; Mutation; Phenylurea Compounds; Rats; Time Factors; Tumor Stem Cell Assay; Xenograft Model Antitumor Assays

2016
H4K20me0 marks post-replicative chromatin and recruits the TONSL–MMS22L DNA repair complex.
    Nature, 2016, 06-30, Volume: 534, Issue:7609

    Topics: Chromatin; DNA Repair; DNA Replication; DNA-Binding Proteins; Genomic Instability; Histones; Homologous Recombination; Humans; Lysine; Methylation; Models, Molecular; Molecular Chaperones; NF-kappa B; Nuclear Proteins; Protein Binding; Protein Structure, Tertiary

2016
Dynamic regulation of histone H3K9 is linked to the switch between replication and transcription at the Dbf4 origin-promoter locus.
    Cell cycle (Georgetown, Tex.), 2016, Volume: 15, Issue:17

    Topics: Acetylation; Cell Cycle; Cell Cycle Proteins; Chromatin; Chromobox Protein Homolog 5; Chromosomal Proteins, Non-Histone; Cohesins; DNA Replication; Down-Regulation; Genetic Loci; HEK293 Cells; HeLa Cells; Histones; Humans; Jumonji Domain-Containing Histone Demethylases; Lysine; Mediator Complex; Methylation; Nucleosomes; Promoter Regions, Genetic; Protein Binding; Protein Processing, Post-Translational; Pseudogenes; Replication Origin; Transcription, Genetic

2016
The H3K9 methyltransferase Setdb1 regulates TLR4-mediated inflammatory responses in macrophages.
    Scientific reports, 2016, 06-28, Volume: 6

    Topics: Animals; Cell Line; Cells, Cultured; Cytokines; Gene Expression Profiling; Histone-Lysine N-Methyltransferase; Histones; Inflammation Mediators; Interleukin-6; Lysine; Macrophages; Methylation; Mice, Inbred C57BL; Mice, Knockout; Mice, Transgenic; NF-kappa B; RNA Interference; Toll-Like Receptor 4

2016
TRIM28 is an Epigenetic Barrier to Induced Pluripotent Stem Cell Reprogramming.
    Stem cells (Dayton, Ohio), 2017, Volume: 35, Issue:1

    Topics: Animals; Cell Proliferation; Cellular Reprogramming; Chromatin; Endogenous Retroviruses; Epigenesis, Genetic; Gene Knockdown Techniques; Histone-Lysine N-Methyltransferase; Histones; Lysine; Methylation; Mice, Transgenic; Models, Biological; Pluripotent Stem Cells; RNA, Small Interfering; Tripartite Motif-Containing Protein 28; Up-Regulation

2017
Histone Methylation by Temozolomide; A Classic DNA Methylating Anticancer Drug.
    Anticancer research, 2016, Volume: 36, Issue:7

    Topics: Animals; Antineoplastic Agents, Alkylating; Arginine; Dacarbazine; DNA Methylation; Histones; Humans; Lysine; Mass Spectrometry; Methylation; Temozolomide; Xenopus

2016
Accurate in silico prediction of species-specific methylation sites based on information gain feature optimization.
    Bioinformatics (Oxford, England), 2016, 10-15, Volume: 32, Issue:20

    Topics: Animals; Computer Simulation; Humans; Lysine; Methylation; Protein Processing, Post-Translational; Species Specificity

2016
Intrinsic protein disorder in histone lysine methylation.
    Biology direct, 2016, 06-30, Volume: 11

    Topics: Binding Sites; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation

2016
Phosphoproteomic analysis of Methanohalophilus portucalensis FDF1(T) identified the role of protein phosphorylation in methanogenesis and osmoregulation.
    Scientific reports, 2016, 06-30, Volume: 6

    Topics: Amino Acid Sequence; Archaeal Proteins; Betaine; Global Warming; Glycine N-Methyltransferase; Lysine; Methane; Methanosarcinaceae; Methylation; Models, Molecular; Mutation, Missense; Osmoregulation; Phosphoproteins; Phosphorylation; Point Mutation; Protein Conformation; Protein Processing, Post-Translational; Proteomics; Salt Tolerance; Tandem Mass Spectrometry

2016
An Achilles' Heel for MLL-Rearranged Leukemias: Writers and Readers of H3 Lysine 36 Dimethylation.
    Cancer discovery, 2016, Volume: 6, Issue:7

    Topics: DNA-Binding Proteins; Epigenesis, Genetic; Gene Expression Regulation, Leukemic; Hematopoiesis; Histone-Lysine N-Methyltransferase; Histones; Humans; Leukemia; Lysine; Methylation; Myeloid-Lymphoid Leukemia Protein; Transcription Factors; Translocation, Genetic

2016
Preparation, Biochemical Analysis, and Structure Determination of Methyllysine Readers.
    Methods in enzymology, 2016, Volume: 573

    Topics: Animals; Crystallography, X-Ray; Epigenesis, Genetic; Escherichia coli; Glutathione Transferase; Histone Code; Histones; Humans; Lysine; Methylation; Nuclear Magnetic Resonance, Biomolecular; Plasmids; Protein Domains; Protein Processing, Post-Translational; Recombinant Fusion Proteins; Up-Regulation

2016
Cardiolipin binds selectively but transiently to conserved lysine residues in the rotor of metazoan ATP synthases.
    Proceedings of the National Academy of Sciences of the United States of America, 2016, 08-02, Volume: 113, Issue:31

    Topics: Amino Acid Sequence; Animals; Bacterial Proteins; Binding Sites; Cardiolipins; Cattle; Lipid Bilayers; Lysine; Methylation; Molecular Dynamics Simulation; Protein Binding; Proton-Translocating ATPases; Saccharomyces cerevisiae Proteins; Sequence Homology, Amino Acid

2016
Supramolecular Affinity Labeling of Histone Peptides Containing Trimethyllysine and Its Application to Histone Deacetylase Assays.
    Journal of the American Chemical Society, 2016, 08-03, Volume: 138, Issue:30

    Topics: Amino Acid Sequence; Enzyme Assays; Fluorescent Dyes; Histone Deacetylases; Histones; Lysine; Methylation; Protein Processing, Post-Translational

2016
TALE-directed local modulation of H3K9 methylation shapes exon recognition.
    Scientific reports, 2016, 07-21, Volume: 6

    Topics: Alternative Splicing; Chromatin; Exons; Fibronectins; HeLa Cells; Histones; Humans; Lysine; Methylation; Transcription Activator-Like Effectors; Transcription, Genetic

2016
Evidence for Regulation of ECM3 Expression by Methylation of Histone H3 Lysine 4 and Intergenic Transcription in Saccharomyces cerevisiae.
    G3 (Bethesda, Md.), 2016, 09-08, Volume: 6, Issue:9

    Topics: Adenosine Triphosphatases; Chromatin; DNA-Binding Proteins; Gene Expression Regulation, Fungal; Histones; Lysine; Methylation; Nuclear Proteins; Nucleosomes; Promoter Regions, Genetic; RNA, Untranslated; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins; Transcription, Genetic

2016
The Structure and Catalytic Mechanism of Sorghum bicolor Caffeoyl-CoA O-Methyltransferase.
    Plant physiology, 2016, Volume: 172, Issue:1

    Topics: Acyl Coenzyme A; Amino Acid Sequence; Biocatalysis; Calcium; Catalytic Domain; Crystallography, X-Ray; Electrophoresis, Polyacrylamide Gel; Kinetics; Lysine; Methylation; Methyltransferases; Models, Molecular; Mutation; Plant Proteins; Protein Multimerization; Protein Structure, Tertiary; Sequence Homology, Amino Acid; Sorghum; Substrate Specificity; Thermodynamics

2016
Beneficial effects of diazepin-quinazolin-amine derivative (BIX-01294) on preimplantation development and molecular characteristics of cloned mouse embryos.
    Reproduction, fertility, and development, 2017, Volume: 29, Issue:6

    Topics: Animals; Azepines; Blastocyst; Cloning, Organism; CpG Islands; DNA Methylation; Ectogenesis; Embryo, Mammalian; Enzyme Inhibitors; Epigenesis, Genetic; Female; Gene Expression Regulation, Developmental; GRB10 Adaptor Protein; Histone-Lysine N-Methyltransferase; Histones; Lysine; Male; Methylation; Mice; Nuclear Transfer Techniques; Parthenogenesis; Protein Processing, Post-Translational; Quinazolines

2017
H3K27me3 Does Not Orchestrate the Expression of Lineage-Specific Markers in hESC-Derived Hepatocytes In Vitro.
    Stem cell reports, 2016, 08-09, Volume: 7, Issue:2

    Topics: Biomarkers; Cell Differentiation; Cell Lineage; Dimethyl Sulfoxide; Enhancer of Zeste Homolog 2 Protein; Gene Expression Regulation; Hepatocytes; Histones; Human Embryonic Stem Cells; Humans; Lysine; Methylation; Regulatory Sequences, Nucleic Acid; Transcription, Genetic

2016
Epigenetic modulation on cat-cow interspecies somatic cell nuclear transfer embryos by treatment with trichostatin A.
    Animal science journal = Nihon chikusan Gakkaiho, 2017, Volume: 88, Issue:4

    Topics: Acetylation; Animals; Cats; Cattle; Cellular Reprogramming Techniques; Embryonic Development; Epigenesis, Genetic; Female; Fertilization in Vitro; Histones; Hydroxamic Acids; Lysine; Methylation; Nuclear Transfer Techniques; Species Specificity

2017
A Histone Methyltransferase ESET Is Critical for T Cell Development.
    Journal of immunology (Baltimore, Md. : 1950), 2016, 09-15, Volume: 197, Issue:6

    Topics: Animals; Apoptosis; CD8-Positive T-Lymphocytes; Cell Differentiation; Embryonic Stem Cells; Extracellular Signal-Regulated MAP Kinases; Gene Expression Regulation; Genome; Histone-Lysine N-Methyltransferase; Histones; Lysine; Methylation; Mice; Promoter Regions, Genetic; Receptors, IgG; Thymocytes

2016
KDM5A controls bone morphogenic protein 2-induced osteogenic differentiation of bone mesenchymal stem cells during osteoporosis.
    Cell death & disease, 2016, 08-11, Volume: 7, Issue:8

    Topics: Aged; Animals; Bone and Bones; Bone Morphogenetic Protein 2; Cell Differentiation; Core Binding Factor Alpha 1 Subunit; Female; Gene Knockdown Techniques; Histones; Humans; Lysine; Mesenchymal Stem Cells; Methylation; Mice; Mice, Inbred C57BL; Osteogenesis; Osteoporosis; Ovariectomy; Promoter Regions, Genetic; Retinoblastoma-Binding Protein 2

2016
Dual Chromatin and Cytoskeletal Remodeling by SETD2.
    Cell, 2016, Aug-11, Volume: 166, Issue:4

    Topics: Cell Line, Tumor; Chromatin Assembly and Disassembly; Cytokinesis; Cytoskeleton; Genomic Instability; Histone Code; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation; Microtubules; Mitosis; Protein Processing, Post-Translational; Tubulin

2016
Mouse MORC3 is a GHKL ATPase that localizes to H3K4me3 marked chromatin.
    Proceedings of the National Academy of Sciences of the United States of America, 2016, 08-30, Volume: 113, Issue:35

    Topics: Adenosine Triphosphatases; Adenylyl Imidodiphosphate; Animals; Chromatin; Crystallography, X-Ray; DNA-Binding Proteins; Histones; Lysine; Methylation; Mice; Models, Molecular; Promoter Regions, Genetic; Protein Binding; Protein Domains; Protein Multimerization; Zinc Fingers

2016
A New Chromatin-Cytoskeleton Link in Cancer.
    Molecular cancer research : MCR, 2016, Volume: 14, Issue:12

    Topics: Chromatin; Cytoskeleton; Genomic Instability; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation; Mutation; Neoplasm Invasiveness; Neoplasm Metastasis; Neoplasms; Tubulin

2016
Measurement of Histone Methylation Dynamics by One-Carbon Metabolic Isotope Labeling and High-energy Collisional Dissociation Methylation Signature Ion Detection.
    Scientific reports, 2016, 08-17, Volume: 6

    Topics: Carbon; Cell Differentiation; Cell Proliferation; Histones; Humans; Isotope Labeling; Lysine; Methylation; Tandem Mass Spectrometry; U937 Cells

2016
reChIP-seq reveals widespread bivalency of H3K4me3 and H3K27me3 in CD4(+) memory T cells.
    Nature communications, 2016, 08-17, Volume: 7

    Topics: Base Sequence; CD4-Positive T-Lymphocytes; Chromatin Immunoprecipitation; CpG Islands; DNA Methylation; Epigenesis, Genetic; Genome, Human; Histones; Humans; Lysine; Methylation; Models, Genetic; Promoter Regions, Genetic; Sequence Analysis, DNA; Transcription Initiation Site

2016
Cooperation between the H3K27me3 Chromatin Mark and Non-CG Methylation in Epigenetic Regulation.
    Plant physiology, 2016, Volume: 172, Issue:2

    Topics: Chromatin; DNA Methylation; Epigenesis, Genetic; Gene Expression Profiling; Gene Expression Regulation, Developmental; Gene Expression Regulation, Plant; Histones; Lysine; Meristem; Methylation; Mutation; Oryza; Plant Leaves; Plant Proteins; Plant Shoots; Polycomb Repressive Complex 2; Protein Binding; Reverse Transcriptase Polymerase Chain Reaction

2016
Lysine methylation represses p53 activity in teratocarcinoma cancer cells.
    Proceedings of the National Academy of Sciences of the United States of America, 2016, 08-30, Volume: 113, Issue:35

    Topics: Cell Differentiation; Cell Line, Tumor; Cell Proliferation; Gene Expression Regulation, Neoplastic; Histone-Lysine N-Methyltransferase; Humans; Lysine; Male; Methylation; Protein Domains; Protein Processing, Post-Translational; RNA, Small Interfering; Signal Transduction; Teratocarcinoma; Testicular Neoplasms; Tumor Suppressor Protein p53

2016
Dissecting the precise role of H3K9 methylation in crosstalk with DNA maintenance methylation in mammals.
    Nature communications, 2016, 08-24, Volume: 7

    Topics: Animals; Animals, Newborn; CCAAT-Enhancer-Binding Proteins; CpG Islands; DNA; DNA Methylation; Histones; Lysine; Mammals; Methylation; Mice, Inbred C57BL; Mice, Transgenic; Nuclear Proteins; Nucleosomes; Protein Binding; Ubiquitin-Protein Ligases

2016
Abundant Lysine Methylation and N-Terminal Acetylation in Sulfolobus islandicus Revealed by Bottom-Up and Top-Down Proteomics.
    Molecular & cellular proteomics : MCP, 2016, Volume: 15, Issue:11

    Topics: Acetylation; Archaeal Proteins; Chromatin; Chromatography, Liquid; Lysine; Methylation; Protein Processing, Post-Translational; Proteomics; Sulfolobus; Tandem Mass Spectrometry

2016
Interdependence of PRC1 and PRC2 for recruitment to Polycomb Response Elements.
    Nucleic acids research, 2016, 12-01, Volume: 44, Issue:21

    Topics: Animals; Animals, Genetically Modified; Chromatin; Drosophila Proteins; Genome, Insect; Histone-Lysine N-Methyltransferase; Histones; Lysine; Methylation; Microtubule-Associated Proteins; Polycomb Repressive Complex 1; Polycomb-Group Proteins; Response Elements; Ubiquitination

2016
SETDB2 Links Glucocorticoid to Lipid Metabolism through Insig2a Regulation.
    Cell metabolism, 2016, 09-13, Volume: 24, Issue:3

    Topics: Animals; Chromatin; Dexamethasone; Enhancer Elements, Genetic; Feeding Behavior; Gene Expression Regulation; Gene Knockdown Techniques; Genetic Loci; Glucocorticoids; Histone-Lysine N-Methyltransferase; Histones; Lipid Metabolism; Liver; Lysine; Male; Membrane Proteins; Methylation; Mice, Inbred C57BL; Mice, Obese; Promoter Regions, Genetic; Protein Binding; Receptors, Glucocorticoid; RNA, Messenger; Sterol Regulatory Element Binding Protein 1; Transcription, Genetic

2016
Polycomb Repressive Complex 2 Enacts Wnt Signaling in Intestinal Homeostasis and Contributes to the Instigation of Stemness in Diseases Entailing Epithelial Hyperplasia or Neoplasia.
    Stem cells (Dayton, Ohio), 2017, Volume: 35, Issue:2

    Topics: Animals; Celiac Disease; Cell Differentiation; Cell Proliferation; Enterocytes; Gene Expression Regulation, Neoplastic; Glutens; Histones; Homeostasis; Humans; Hyperplasia; Intestinal Mucosa; Intestinal Neoplasms; Lysine; Methylation; Mice, Inbred C57BL; Models, Biological; Polycomb Repressive Complex 2; Stem Cell Niche; Stem Cells; Wnt Signaling Pathway

2017
Zinc oxide nanoparticles-induced epigenetic change and G2/M arrest are associated with apoptosis in human epidermal keratinocytes.
    International journal of nanomedicine, 2016, Volume: 11

    Topics: Acetylation; Apoptosis; Cell Line; Cell Proliferation; Cell Survival; Chromatin; DNA Damage; Epidermal Cells; Epigenesis, Genetic; G2 Phase Cell Cycle Checkpoints; Histones; Humans; Keratinocytes; Lysine; M Phase Cell Cycle Checkpoints; Methylation; Models, Biological; Nanoparticles; Reactive Oxygen Species; Signal Transduction; Up-Regulation; Zinc Oxide

2016
Preovulatory Aging In Vivo and In Vitro Affects Maturation Rates, Abundance of Selected Proteins, Histone Methylation Pattern and Spindle Integrity in Murine Oocytes.
    PloS one, 2016, Volume: 11, Issue:9

    Topics: Aging; Animals; Chromosomes, Mammalian; Histones; Lysine; Metaphase; Methylation; Mice; Oocytes; Ovulation; RNA-Binding Proteins; RNA, Messenger; Spindle Apparatus

2016
Broad histone H3K4me3 domains in mouse oocytes modulate maternal-to-zygotic transition.
    Nature, 2016, 09-22, Volume: 537, Issue:7621

    Topics: Acetylation; Animals; Cell Line, Tumor; Chromatin; Chromatin Immunoprecipitation; DNA Methylation; Embryonic Development; Female; Gene Expression Regulation, Developmental; Genome; Histones; Humans; Lysine; Male; Methylation; Mice; Oocytes; Sequence Analysis, DNA; Transcription Initiation Site; Zygote

2016
Distinct features of H3K4me3 and H3K27me3 chromatin domains in pre-implantation embryos.
    Nature, 2016, 09-22, Volume: 537, Issue:7621

    Topics: Animals; Blastocyst; Chromatin; Chromatin Immunoprecipitation; Embryonic Stem Cells; Epigenesis, Genetic; Female; Fertilization; Genome; Histones; Lysine; Male; Methylation; Mice; Promoter Regions, Genetic; Transcription Initiation Site; Zygote

2016
Allelic reprogramming of the histone modification H3K4me3 in early mammalian development.
    Nature, 2016, 09-22, Volume: 537, Issue:7621

    Topics: Alleles; Animals; Cellular Reprogramming; Chromatin Immunoprecipitation; CpG Islands; DNA Methylation; DNA Replication; DNA-Binding Proteins; Embryo, Mammalian; Female; Fertilization; Gene Silencing; Genome; Histones; Jumonji Domain-Containing Histone Demethylases; Lysine; Male; Methylation; Mice; Oocytes; Promoter Regions, Genetic; Sequence Analysis, DNA; Transcription Initiation, Genetic; Zygote

2016
Aging Triggers a Repressive Chromatin State at Bdnf Promoters in Hippocampal Neurons.
    Cell reports, 2016, 09-13, Volume: 16, Issue:11

    Topics: Acetylation; Aging; Animals; Brain-Derived Neurotrophic Factor; Cholesterol; Chromatin; Cognition; Epigenesis, Genetic; Hippocampus; Histones; Long-Term Potentiation; Lysine; Methylation; Mice, Inbred C57BL; N-Methylaspartate; Neurons; Promoter Regions, Genetic; Receptors, N-Methyl-D-Aspartate; Signal Transduction; Transcription, Genetic; Voriconazole

2016
SMYD3-mediated lysine methylation in the PH domain is critical for activation of AKT1.
    Oncotarget, 2016, Nov-15, Volume: 7, Issue:46

    Topics: Cell Membrane; Enzyme Activation; Gene Expression; Gene Knockdown Techniques; Histone-Lysine N-Methyltransferase; Humans; Lysine; Methylation; Neoplasms; Phosphorylation; Pleckstrin Homology Domains; Proto-Oncogene Proteins c-akt; Signal Transduction; Tyrosine

2016
Genome-wide positioning of bivalent mononucleosomes.
    BMC medical genomics, 2016, 09-15, Volume: 9, Issue:1

    Topics: Cell Line, Tumor; CpG Islands; Epigenesis, Genetic; Genomics; Histones; Humans; Lysine; Methylation; Nucleosomes; Promoter Regions, Genetic; Transcription Initiation Site

2016
Histone Modifications Define Expression Bias of Homoeologous Genomes in Allotetraploid Cotton.
    Plant physiology, 2016, Volume: 172, Issue:3

    Topics: Cell Nucleus; Chromosomes, Plant; DNA, Ribosomal; Gene Expression Profiling; Gene Expression Regulation, Plant; Genes, Plant; Genetic Loci; Genome, Plant; Gossypium; Histone Code; Histones; Lysine; Meristem; Methylation; Polyploidy; Protein Processing, Post-Translational; RNA, Messenger; Translocation, Genetic

2016
Differential deposition of H2A.Z in combination with histone modifications within related genes in Oryza sativa callus and seedling.
    The Plant journal : for cell and molecular biology, 2017, Volume: 89, Issue:2

    Topics: Chromatin Immunoprecipitation; Chromosome Mapping; DNA Methylation; Gene Expression Regulation, Plant; Histone Code; Histones; Lysine; Methylation; Oryza; Plant Proteins; Seedlings; Transcription Initiation Site

2017
Dpy30 is critical for maintaining the identity and function of adult hematopoietic stem cells.
    The Journal of experimental medicine, 2016, 10-17, Volume: 213, Issue:11

    Topics: Adult Stem Cells; Animals; Bone Marrow; Cell Differentiation; Cell Lineage; Down-Regulation; Gene Deletion; Genome; Hematopoiesis; Hematopoietic Stem Cell Transplantation; Hematopoietic Stem Cells; Histone-Lysine N-Methyltransferase; Histones; Lysine; Methylation; Mice, Inbred C57BL; Mice, Knockout; Pancytopenia; Phenotype; Signal Transduction; Transcription Factors

2016
Involvement of Histone Lysine Methylation in p21 Gene Expression in Rat Kidney In Vivo and Rat Mesangial Cells In Vitro under Diabetic Conditions.
    Journal of diabetes research, 2016, Volume: 2016

    Topics: Animals; Antibodies; Blotting, Western; Cyclin-Dependent Kinase Inhibitor p21; Diabetes Mellitus, Experimental; Diabetes Mellitus, Type 1; Diabetic Nephropathies; Gene Expression Regulation; Glucose; Histone Code; Histone-Lysine N-Methyltransferase; In Vitro Techniques; Kidney Glomerulus; Lysine; Male; Mesangial Cells; Methylation; Promoter Regions, Genetic; Rats; Rats, Wistar; Transforming Growth Factor beta1

2016
Insights into the epigenetic mechanisms involving histone lysine methylation and demethylation in ischemia induced damage and repair has therapeutic implication.
    Biochimica et biophysica acta. Molecular basis of disease, 2017, Volume: 1863, Issue:1

    Topics: Amino Acids, Dicarboxylic; Animals; Brain; Brain Ischemia; Cell Death; Corpus Striatum; Demethylation; Epigenesis, Genetic; Histone Demethylases; Histone-Lysine N-Methyltransferase; Histones; Lysine; Male; Methylation; Mice

2017
Histone H3K9 methylation is dispensable for Caenorhabditis elegans development but suppresses RNA:DNA hybrid-associated repeat instability.
    Nature genetics, 2016, Volume: 48, Issue:11

    Topics: Animals; Caenorhabditis elegans; Caenorhabditis elegans Proteins; DNA, Helminth; Fertility; Genes, Helminth; Histone-Lysine N-Methyltransferase; Histones; Interspersed Repetitive Sequences; Lysine; Methylation; Nucleic Acid Hybridization; RNA Stability; RNA, Helminth; Temperature

2016
Effect of lysine methylation and acetylation on the RNA recognition and cellular uptake of Tat-derived peptides.
    Bioorganic & medicinal chemistry, 2016, 11-01, Volume: 24, Issue:21

    Topics: Acetylation; Humans; Hydrogen Bonding; Jurkat Cells; Lysine; Methylation; Peptides; RNA, Viral; tat Gene Products, Human Immunodeficiency Virus

2016
UTX-1 regulates Tat-induced HIV-1 transactivation via changing the methylated status of histone H3.
    The international journal of biochemistry & cell biology, 2016, Volume: 80

    Topics: Active Transport, Cell Nucleus; Cell Nucleus; HeLa Cells; Histone Demethylases; Histones; HIV-1; Humans; Lysine; Methylation; NF-kappa B; Nuclear Proteins; tat Gene Products, Human Immunodeficiency Virus; Transcription Factor RelA; Transcriptional Activation; Up-Regulation

2016
Global tRNA misacylation induced by anaerobiosis and antibiotic exposure broadly increases stress resistance in Escherichia coli.
    Nucleic acids research, 2016, Dec-01, Volume: 44, Issue:21

    Topics: Acylation; Adaptation, Biological; Amino Acid Sequence; Anaerobiosis; Anti-Bacterial Agents; Cluster Analysis; Escherichia coli; Lysine; Methionine; Methionine-tRNA Ligase; Methylation; Protein Biosynthesis; RNA, Transfer; Stress, Physiological

2016
A-to-I RNA editing of the IGFBP7 transcript increases during aging in porcine brain tissues.
    Biochemical and biophysical research communications, 2016, Oct-21, Volume: 479, Issue:3

    Topics: Aging; Amino Acid Sequence; Animals; Arginine; Binding Sites; Brain; Brain Mapping; Cerebellum; Chromosome Mapping; Female; Frontal Lobe; Gene Expression Profiling; Gene Expression Regulation; Humans; Insulin-Like Growth Factor Binding Proteins; Lung; Lysine; Methylation; Mice; RNA Editing; RNA-Binding Proteins; RNA, Messenger; Sulfates; Swine

2016
Dietary resistant starch type 4-derived butyrate attenuates nuclear factor-kappa-B1 through modulation of histone H3 trimethylation at lysine 27.
    Food & function, 2016, Sep-14, Volume: 7, Issue:9

    Topics: Animals; Bacteria; Butyric Acid; Cecum; Cell Line; Dietary Carbohydrates; Gastrointestinal Microbiome; Histones; Humans; Lysine; Male; Methylation; Mice; NF-kappa B; Promoter Regions, Genetic; Starch

2016
H3K36 methylation state and associated silencing mechanisms.
    Transcription, 2017, Volume: 8, Issue:1

    Topics: Epigenesis, Genetic; Exons; Gene Silencing; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Male; Methylation; Protein Domains; RNA Polymerase II

2017
ATF7IP-Mediated Stabilization of the Histone Methyltransferase SETDB1 Is Essential for Heterochromatin Formation by the HUSH Complex.
    Cell reports, 2016, 10-11, Volume: 17, Issue:3

    Topics: Cell Nucleus; Enzyme Stability; Epigenesis, Genetic; Gene Deletion; Gene Silencing; HeLa Cells; Heterochromatin; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation; Multiprotein Complexes; Proteasome Endopeptidase Complex; Protein Binding; Protein Methyltransferases; Proteolysis; Repressor Proteins; Transcription Factors; Transcriptome

2016
Lysyl oxidase-like 2 (LOXL2) oxidizes trimethylated lysine 4 in histone H3.
    The FEBS journal, 2016, Volume: 283, Issue:23

    Topics: Amino Acid Oxidoreductases; Antigens, CD; Blotting, Western; Cadherins; Cell Line; Cell Line, Tumor; Gene Expression Profiling; Gene Expression Regulation; Histones; Humans; Lysine; Methylation; Oxidation-Reduction; Reverse Transcriptase Polymerase Chain Reaction; RNA Interference; Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization; Spectrophotometry, Infrared

2016
Elucidation of the Fanconi Anemia Protein Network in Meiosis and Its Function in the Regulation of Histone Modifications.
    Cell reports, 2016, 10-18, Volume: 17, Issue:4

    Topics: Adaptor Proteins, Signal Transducing; Animals; BRCA1 Protein; BRCA2 Protein; Cell Cycle Proteins; DNA Breaks, Double-Stranded; Fanconi Anemia Complementation Group Proteins; Histones; Intracellular Signaling Peptides and Proteins; Lysine; Male; Meiosis; Methylation; Mice; Protein Processing, Post-Translational; Rad51 Recombinase; Recombination, Genetic; Sex Chromosomes; Time Factors

2016
PHF20 Readers Link Methylation of Histone H3K4 and p53 with H4K16 Acetylation.
    Cell reports, 2016, 10-18, Volume: 17, Issue:4

    Topics: Acetylation; Amino Acid Sequence; Antigens, Neoplasm; Aspartic Acid; Biomarkers, Tumor; Cell Line, Tumor; Cell Proliferation; Cell Survival; DNA-Binding Proteins; Gene Expression Regulation, Neoplastic; Glutamic Acid; Histones; Humans; Lung Neoplasms; Lysine; Methylation; Models, Biological; Models, Molecular; Mutation; Protein Binding; Protein Domains; Transcription Factors; Tumor Suppressor Protein p53

2016
Histone methyltransferase TXR1 is required for both H3 and H3.3 lysine 27 methylation in the well-known ciliated protist Tetrahymena thermophila.
    Science China. Life sciences, 2017, Volume: 60, Issue:3

    Topics: Amino Acid Sequence; DNA Replication; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Histones; Lysine; Methylation; Mutation; Protozoan Proteins; Substrate Specificity; Tetrahymena thermophila

2017
Widespread occurrence of lysine methylation in Plasmodium falciparum proteins at asexual blood stages.
    Scientific reports, 2016, 10-20, Volume: 6

    Topics: Amino Acid Motifs; Amino Acid Sequence; Antibodies, Protozoan; Antibody Specificity; Histone-Lysine N-Methyltransferase; Humans; Life Cycle Stages; Lysine; Malaria, Falciparum; Methylation; Plasmodium falciparum; Position-Specific Scoring Matrices; Protozoan Proteins; Substrate Specificity

2016
Roles of H3K27me2 and H3K27me3 Examined during Fate Specification of Embryonic Stem Cells.
    Cell reports, 2016, 10-25, Volume: 17, Issue:5

    Topics: Animals; Cell Differentiation; Cell Lineage; Embryoid Bodies; Enhancer of Zeste Homolog 2 Protein; Gene Expression Regulation; Genome; Histones; Lysine; Methylation; Mice; Mouse Embryonic Stem Cells; Neurons; Regulatory Sequences, Nucleic Acid; RNA Editing; Transcription Activator-Like Effector Nucleases; Transcription, Genetic

2016
Global Proteomics Analysis of Protein Lysine Methylation.
    Current protocols in protein science, 2016, Nov-01, Volume: 86

    Topics: Antibody Affinity; Histone-Lysine N-Methyltransferase; Histones; Lysine; Methylation; Proteins; Proteomics; Tandem Mass Spectrometry

2016
Antibody-Free Approach for the Global Analysis of Protein Methylation.
    Analytical chemistry, 2016, 12-06, Volume: 88, Issue:23

    Topics: Arginine; Hep G2 Cells; Humans; Hydrogen-Ion Concentration; Lysine; Methylation; Peptides; Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization

2016
Regulation of Vegetative Phase Change by SWI2/SNF2 Chromatin Remodeling ATPase BRAHMA.
    Plant physiology, 2016, Volume: 172, Issue:4

    Topics: Adenosine Triphosphatases; Arabidopsis; Arabidopsis Proteins; Chromatin Assembly and Disassembly; Gene Expression Regulation, Plant; Genes, Plant; Genetic Loci; Histones; Homeodomain Proteins; Lysine; Methylation; MicroRNAs; Models, Biological; Mutation; Nucleosomes; Phenotype; Promoter Regions, Genetic; Protein Binding

2016
α-Synuclein enhances histone H3 lysine-9 dimethylation and H3K9me2-dependent transcriptional responses.
    Scientific reports, 2016, 11-03, Volume: 6

    Topics: alpha-Synuclein; Animals; Animals, Genetically Modified; Cell Line, Tumor; Drosophila melanogaster; Histocompatibility Antigens; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Male; Methylation; Mice; Neuroblastoma; Repressor Proteins; Transcription, Genetic

2016
Histone H3 Lysine 4 Trimethylation, Lysine 27 Trimethylation, and Lysine 27 Acetylation Contribute to the Transcriptional Repression of Solute Carrier Family 47 Member 2 in Renal Cell Carcinoma.
    Drug metabolism and disposition: the biological fate of chemicals, 2017, Volume: 45, Issue:1

    Topics: Acetylation; Carcinoma, Renal Cell; Cell Line, Tumor; Chromatin Immunoprecipitation; Epigenesis, Genetic; HEK293 Cells; Histones; Humans; Kidney Neoplasms; Lysine; Methylation; Organic Cation Transport Proteins; Transcription, Genetic

2017
Reader domain specificity and lysine demethylase-4 family function.
    Nature communications, 2016, 11-14, Volume: 7

    Topics: Animals; Binding Sites; Crystallography, X-Ray; Histones; Humans; Isoenzymes; Jumonji Domain-Containing Histone Demethylases; Lysine; Male; Methylation; Mice, Inbred C57BL; Models, Molecular; Protein Domains; Protein Processing, Post-Translational; Rats, Sprague-Dawley

2016
G9a participates in nerve injury-induced Kcna2 downregulation in primary sensory neurons.
    Scientific reports, 2016, 11-22, Volume: 6

    Topics: Action Potentials; Animals; Axotomy; Cells, Cultured; Down-Regulation; Ganglia, Spinal; Histone-Lysine N-Methyltransferase; Histones; Hypersensitivity; Ion Channel Gating; Kv1.2 Potassium Channel; Ligation; Lysine; Male; Methylation; Mice, Inbred C57BL; Neuralgia; RNA, Messenger; Sensory Receptor Cells; Spinal Nerves

2016
Histone chaperone APLF regulates induction of pluripotency in murine fibroblasts.
    Journal of cell science, 2016, 12-15, Volume: 129, Issue:24

    Topics: Animals; Cadherins; Carrier Proteins; Cell Cycle Checkpoints; Cell Differentiation; Cellular Reprogramming; Colony-Forming Units Assay; DNA Repair; DNA-(Apurinic or Apyrimidinic Site) Lyase; Down-Regulation; Embryo, Mammalian; Epithelial Cells; Female; Fibroblasts; Gene Knockdown Techniques; HEK293 Cells; Histone Chaperones; Histones; Humans; Induced Pluripotent Stem Cells; Kruppel-Like Factor 4; Lysine; Male; Mesoderm; Methylation; Mice; Mice, Inbred C57BL; Poly-ADP-Ribose Binding Proteins; Promoter Regions, Genetic; Up-Regulation

2016
Alteration of histone H3 lysine 9 dimethylation in peripheral white blood cells of septic patients with trauma and cancer.
    Molecular medicine reports, 2016, Volume: 14, Issue:6

    Topics: Adult; Aged; Aged, 80 and over; C-Reactive Protein; Female; Fluorescent Antibody Technique; Histones; Humans; Leukocytes; Lysine; Male; Methylation; Middle Aged; Neoplasms; ROC Curve; Sepsis; Wounds and Injuries

2016
Selective suppression of antisense transcription by Set2-mediated H3K36 methylation.
    Nature communications, 2016, 11-28, Volume: 7

    Topics: Gene Deletion; Gene Expression Regulation, Fungal; Genome, Fungal; Histones; Lysine; Methylation; Methyltransferases; Open Reading Frames; Reproducibility of Results; RNA Stability; RNA, Antisense; RNA, Messenger; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins; Transcription, Genetic

2016
Modulation of mRNA and lncRNA expression dynamics by the Set2-Rpd3S pathway.
    Nature communications, 2016, 11-28, Volume: 7

    Topics: Gene Expression Regulation, Fungal; Histones; Kinetics; Lysine; Methylation; Methyltransferases; Models, Biological; Promoter Regions, Genetic; RNA, Long Noncoding; RNA, Messenger; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins; Transcription, Genetic

2016
Jarid2 binds mono-ubiquitylated H2A lysine 119 to mediate crosstalk between Polycomb complexes PRC1 and PRC2.
    Nature communications, 2016, 11-28, Volume: 7

    Topics: Amino Acid Motifs; Amino Acid Sequence; Animals; DNA Methylation; Histones; Lysine; Methylation; Mice; Nucleosomes; Polycomb Repressive Complex 1; Polycomb Repressive Complex 2; Protein Binding; Protein Domains; Ubiquitination; X Chromosome Inactivation

2016
A Genetically Encoded Allysine for the Synthesis of Proteins with Site-Specific Lysine Dimethylation.
    Angewandte Chemie (International ed. in English), 2017, 01-02, Volume: 56, Issue:1

    Topics: 2-Aminoadipic Acid; Escherichia coli; Genetic Code; Histones; Humans; Lysine; Methylation; Models, Molecular; Mutagenesis, Site-Directed; Protein Processing, Post-Translational; Tumor Suppressor Protein p53

2017
A Transcription Factor Pulse Can Prime Chromatin for Heritable Transcriptional Memory.
    Molecular and cellular biology, 2017, 02-15, Volume: 37, Issue:4

    Topics: CCAAT-Enhancer-Binding Protein-alpha; Chromatin; Enhancer Elements, Genetic; Gene Expression Regulation; Histones; Lipopolysaccharides; Lysine; Methylation; Protein Binding; RNA Polymerase II; Transcription Factors; Transcription, Genetic

2017
Perturbation of H3K27me3-Associated Epigenetic Processes Increases Agrobacterium-Mediated Transformation.
    Molecular plant-microbe interactions : MPMI, 2017, Volume: 30, Issue:1

    Topics: Agrobacterium; Amino Acid Sequence; Arabidopsis; Arabidopsis Proteins; Chromatin; Epigenesis, Genetic; Evolution, Molecular; Gene Expression Regulation, Plant; Genes, Plant; Histones; Lysine; Methylation; Plant Roots; Plants, Genetically Modified; Transformation, Genetic

2017
Kinetic isotope effects reveal early transition state of protein lysine methyltransferase SET8.
    Proceedings of the National Academy of Sciences of the United States of America, 2016, 12-27, Volume: 113, Issue:52

    Topics: Binding, Competitive; Catalysis; Cell Cycle; Computer Simulation; Histone-Lysine N-Methyltransferase; Histones; Humans; Isotopes; Kinetics; Lysine; Methylation; Models, Molecular; Models, Theoretical; Neoplasm Metastasis; Peptides; Protein Structure, Secondary; S-Adenosylmethionine; Software; Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization; Substrate Specificity

2016
Histone H3 Lysine 9 Acetylation Obstructs ATM Activation and Promotes Ionizing Radiation Sensitivity in Normal Stem Cells.
    Stem cell reports, 2016, 12-13, Volume: 7, Issue:6

    Topics: Acetylation; Animals; Ataxia Telangiectasia Mutated Proteins; DNA Breaks; DNA Repair; Down-Regulation; Embryonic Stem Cells; Histone Acetyltransferases; Histones; Lysine; Methylation; Mice, Inbred C57BL; Neural Stem Cells; Radiation Tolerance; Radiation, Ionizing; Up-Regulation

2016
LSD1 Substrate Binding and Gene Expression Are Affected by HDAC1-Mediated Deacetylation.
    ACS chemical biology, 2017, 01-20, Volume: 12, Issue:1

    Topics: Acetylation; Gene Expression; HEK293 Cells; HeLa Cells; Histone Deacetylase 1; Histone Deacetylase Inhibitors; Histone Demethylases; Histones; Humans; Hydroxamic Acids; Indoles; Lysine; MCF-7 Cells; Methylation; Models, Chemical; Vorinostat

2017
World Trade Center (WTC) dust exposure in mice is associated with inflammation, oxidative stress and epigenetic changes in the lung.
    Experimental and molecular pathology, 2017, Volume: 102, Issue:1

    Topics: Air Pollutants; Animals; Blotting, Western; Cyclooxygenase 2; Cytokines; DNA Methylation; Dust; Epigenesis, Genetic; Female; Gene Expression; Heme Oxygenase-1; Histones; Humans; Immunohistochemistry; Inflammation; Inhalation Exposure; Lung; Lysine; Matrix Metalloproteinases; Methylation; Mice, Inbred C57BL; Oxidative Stress; Reverse Transcriptase Polymerase Chain Reaction; September 11 Terrorist Attacks; Up-Regulation

2017
Adaptive Chromatin Remodeling Drives Glioblastoma Stem Cell Plasticity and Drug Tolerance.
    Cell stem cell, 2017, 02-02, Volume: 20, Issue:2

    Topics: Acetylation; Base Sequence; Biomarkers, Tumor; Brain; Cell Cycle; Cell Line, Tumor; Cell Proliferation; Chromatin Assembly and Disassembly; Drug Resistance, Neoplasm; Enhancer Elements, Genetic; Glioblastoma; Histone Demethylases; Histones; Humans; Jumonji Domain-Containing Histone Demethylases; Lysine; Methylation; Neoplastic Stem Cells; Nuclear Proteins; Protein Binding; Protein Kinase Inhibitors; Protein Kinases; Receptors, Notch; Signal Transduction; Transcription, Genetic

2017
Human Naive Pluripotent Stem Cells Model X Chromosome Dampening and X Inactivation.
    Cell stem cell, 2017, 01-05, Volume: 20, Issue:1

    Topics: Base Sequence; Blastocyst; Cell Differentiation; Cells, Cultured; Chromosomes, Human, X; DNA Methylation; Female; Histones; Human Embryonic Stem Cells; Humans; Lysine; Methylation; Pluripotent Stem Cells; RNA, Long Noncoding; X Chromosome Inactivation

2017
Mutations in the histone methyltransferase gene KMT2B cause complex early-onset dystonia.
    Nature genetics, 2017, Volume: 49, Issue:2

    Topics: Adolescent; DNA-Binding Proteins; Dystonia; Female; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Male; Methylation; Mutation; Nuclear Proteins

2017
Soft matrices downregulate FAK activity to promote growth of tumor-repopulating cells.
    Biochemical and biophysical research communications, 2017, 01-29, Volume: 483, Issue:1

    Topics: Animals; cdc42 GTP-Binding Protein; Cell Culture Techniques; Cell Line, Tumor; Cell Proliferation; Down-Regulation; Focal Adhesion Kinase 1; Histones; Humans; Lysine; Melanoma; Methylation; Mice; rhoA GTP-Binding Protein; SOXB1 Transcription Factors; Tumor Stem Cell Assay

2017
Editor's Highlight: Organ-Specific Epigenetic Changes Induced by the Nongenotoxic Liver Carcinogen Methapyrilene in Fischer 344 Rats.
    Toxicological sciences : an official journal of the Society of Toxicology, 2017, 03-01, Volume: 156, Issue:1

    Topics: Acetylation; Administration, Oral; Animals; Benzofurans; Carcinogens; Chromatin Assembly and Disassembly; Dose-Response Relationship, Drug; Epigenesis, Genetic; Hepatocyte Nuclear Factor 1-alpha; Histones; Homeodomain Proteins; Kidney; Liver; Lysine; Male; Methapyrilene; Methylation; Organ Specificity; PPAR alpha; Protein Processing, Post-Translational; Random Allocation; Rats, Inbred F344; Tumor Suppressor Proteins

2017
SETD4 Regulates Cell Quiescence and Catalyzes the Trimethylation of H4K20 during Diapause Formation in Artemia.
    Molecular and cellular biology, 2017, 04-01, Volume: 37, Issue:7

    Topics: Amino Acid Sequence; Animals; Artemia; Base Sequence; Biocatalysis; Cell Cycle; Cell Division; Cell Line, Tumor; Diapause, Insect; Embryo, Nonmammalian; Gene Knockdown Techniques; Histones; Lysine; Methylation; Transcription Factors

2017
Coordination of Cell Cycle Progression and Mitotic Spindle Assembly Involves Histone H3 Lysine 4 Methylation by Set1/COMPASS.
    Genetics, 2017, Volume: 205, Issue:1

    Topics: Chromatin; DNA-Binding Proteins; Histone-Lysine N-Methyltransferase; Histones; Lysine; M Phase Cell Cycle Checkpoints; Methylation; Mitosis; Protein Processing, Post-Translational; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins; Spindle Apparatus; Transcription Factors; Ubiquitination

2017
Chaetocin reactivates the lytic replication of Epstein-Barr virus from latency via reactive oxygen species.
    Science China. Life sciences, 2017, Volume: 60, Issue:1

    Topics: Acetylcysteine; Animals; Antigens, Viral; B-Lymphocytes; Blotting, Western; Callithrix; Cell Line, Transformed; Dose-Response Relationship, Drug; Free Radical Scavengers; Gene Expression Regulation; Glutathione Peroxidase; Herpesvirus 4, Human; Histones; Host-Pathogen Interactions; Humans; Lysine; Methylation; NADH Dehydrogenase; Phospholipid Hydroperoxide Glutathione Peroxidase; Piperazines; Reactive Oxygen Species; Reverse Transcriptase Polymerase Chain Reaction; Trans-Activators; Virus Activation; Virus Latency; Virus Replication

2017
Discovery of First-in-Class, Potent, and Orally Bioavailable Embryonic Ectoderm Development (EED) Inhibitor with Robust Anticancer Efficacy.
    Journal of medicinal chemistry, 2017, 03-23, Volume: 60, Issue:6

    Topics: Animals; Antineoplastic Agents; Cell Proliferation; Crystallography, X-Ray; Dogs; Female; Haplorhini; Histones; Humans; Lymphoma, Large B-Cell, Diffuse; Lysine; Male; Methylation; Mice; Mice, Inbred BALB C; Mice, Nude; Molecular Docking Simulation; Polycomb Repressive Complex 2; Rats; Sulfones; Triazoles

2017
WHSC1L1-mediated EGFR mono-methylation enhances the cytoplasmic and nuclear oncogenic activity of EGFR in head and neck cancer.
    Scientific reports, 2017, 01-19, Volume: 7

    Topics: Antineoplastic Agents; Biomarkers; Cell Nucleus; Cytoplasm; DNA Replication; Drug Resistance, Neoplasm; ErbB Receptors; Erlotinib Hydrochloride; Gene Knockdown Techniques; Head and Neck Neoplasms; Histone-Lysine N-Methyltransferase; Humans; Immunohistochemistry; Lysine; Methylation; Models, Biological; Nuclear Proteins; Proliferating Cell Nuclear Antigen; Protein Binding; Protein Interaction Domains and Motifs; Protein Kinase Inhibitors; Protein Transport

2017
Probe the function of histone lysine 36 methylation using histone H3 lysine 36 to methionine mutant transgene in mammalian cells.
    Cell cycle (Georgetown, Tex.), 2017, Oct-02, Volume: 16, Issue:19

    Topics: Amino Acid Substitution; Cell Line, Transformed; Cell Transformation, Neoplastic; Chondrocytes; Chromatin; Epigenesis, Genetic; HEK293 Cells; Histones; Humans; Lysine; Methionine; Methylation; Mutation; Protein Processing, Post-Translational; Signal Transduction

2017
The cysteine-rich domain of TET2 binds preferentially to mono- and dimethylated histone H3K36.
    Journal of biochemistry, 2017, Apr-01, Volume: 161, Issue:4

    Topics: Binding Sites; Chromatin; Cysteine; Dioxygenases; DNA-Binding Proteins; HEK293 Cells; Histones; Humans; Immunoblotting; Lysine; Methylation; Microscopy, Confocal; Models, Molecular; Mutation, Missense; Protein Binding; Protein Domains; Proto-Oncogene Proteins

2017
Vernalization-Triggered Intragenic Chromatin Loop Formation by Long Noncoding RNAs.
    Developmental cell, 2017, 02-06, Volume: 40, Issue:3

    Topics: Arabidopsis; Arabidopsis Proteins; Chromatin; Cold Temperature; Flowers; Gene Expression Regulation, Plant; Gene Silencing; Genetic Loci; Histones; Lysine; MADS Domain Proteins; Methylation; Mutation; Nucleic Acid Conformation; Plants, Genetically Modified; Polycomb Repressive Complex 2; Promoter Regions, Genetic; Repressor Proteins; RNA, Long Noncoding

2017
    Molecular and cellular biology, 2017, 04-15, Volume: 37, Issue:8

    Topics: Alcohol Oxidoreductases; Animals; Atrophy; Body Weight; Demyelinating Diseases; Gene Deletion; Gliosis; Glutarates; Hippocampus; Histones; Inflammation; Leukoencephalopathies; Lysine; Male; Methylation; Mice, Knockout; Nerve Degeneration; Neurogenesis; Neuroglia; Organ Size; Testis; White Matter

2017
Clr4 specificity and catalytic activity beyond H3K9 methylation.
    Biochimie, 2017, Volume: 135

    Topics: Cell Cycle Proteins; Histone-Lysine N-Methyltransferase; Histones; Lysine; Methylation; Methyltransferases; Protein Processing, Post-Translational; Schizosaccharomyces; Schizosaccharomyces pombe Proteins; Substrate Specificity

2017
Synthetic essentiality of chromatin remodelling factor CHD1 in PTEN-deficient cancer.
    Nature, 2017, 02-23, Volume: 542, Issue:7642

    Topics: beta-Transducin Repeat-Containing Proteins; Breast Neoplasms; Cell Line, Tumor; Chromatin Assembly and Disassembly; DNA Helicases; DNA-Binding Proteins; Female; Gene Expression Regulation, Neoplastic; Genes, Essential; Glycogen Synthase Kinase 3 beta; Histones; Humans; Lysine; Male; Methylation; Molecular Targeted Therapy; Neoplasms; NF-kappa B; Phosphorylation; Prostatic Neoplasms; Proteasome Endopeptidase Complex; Protein Stability; Proteolysis; PTEN Phosphohydrolase; Tumor Necrosis Factor-alpha; Ubiquitination

2017
Pathogenesis of Osteosclerotic Change Following Treatment with an Antibody Against RANKL for Giant Cell Tumour of the Bone.
    Anticancer research, 2017, Volume: 37, Issue:2

    Topics: Adult; Alkaline Phosphatase; Bone and Bones; Bone Density Conservation Agents; Bone Neoplasms; Denosumab; Female; Giant Cell Tumor of Bone; Histones; Humans; Immunohistochemistry; Lysine; Male; Methylation; Microscopy, Fluorescence; Middle Aged; Osteocalcin; Osteogenesis; RANK Ligand

2017
G1 cyclins link proliferation, pluripotency and differentiation of embryonic stem cells.
    Nature cell biology, 2017, Volume: 19, Issue:3

    Topics: Animals; Biomarkers; Cell Cycle; Cell Differentiation; Cell Proliferation; Cell Separation; Cyclin G1; DNA; Embryo, Mammalian; Epigenesis, Genetic; Female; Flow Cytometry; Gene Expression Profiling; Histones; Hormones; Imaging, Three-Dimensional; Lysine; Mammary Glands, Animal; Methylation; Mice; Mice, Inbred C57BL; Mouse Embryonic Stem Cells; Receptors, G-Protein-Coupled; RNA; Steroids; Tetraspanins

2017
Acidic domains differentially read histone H3 lysine 4 methylation status and are widely present in chromatin-associated proteins.
    Science China. Life sciences, 2017, Volume: 60, Issue:2

    Topics: Amino Acid Sequence; Binding Sites; Chromatin; DNA-Binding Proteins; HEK293 Cells; HeLa Cells; Histone Chaperones; Histones; Humans; Intracellular Signaling Peptides and Proteins; Lysine; Methylation; Nuclear Proteins; Nucleolin; Nucleophosmin; Phosphoproteins; Pol1 Transcription Initiation Complex Proteins; Protein Binding; Protein Domains; RNA-Binding Proteins; Transcription Factors

2017
Histone Lysine-to-Methionine Mutations Reduce Histone Methylation and Cause Developmental Pleiotropy.
    Plant physiology, 2017, Volume: 173, Issue:4

    Topics: Amino Acid Substitution; Arabidopsis; Arabidopsis Proteins; Epigenesis, Genetic; Flowers; Gene Expression Profiling; Gene Expression Regulation, Developmental; Gene Expression Regulation, Plant; Gene Ontology; Genetic Pleiotropy; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Histones; Immunoblotting; Lysine; Methionine; Methylation; Mutation; Plants, Genetically Modified; Reverse Transcriptase Polymerase Chain Reaction; Time Factors

2017
Menin regulates Inhbb expression through an Akt/Ezh2-mediated H3K27 histone modification.
    Biochimica et biophysica acta. Gene regulatory mechanisms, 2017, Volume: 1860, Issue:4

    Topics: Animals; Cell Line, Tumor; Embryo, Mammalian; Enhancer of Zeste Homolog 2 Protein; Fibroblasts; Gene Expression Regulation; Genetic Loci; Histones; Inhibin-beta Subunits; Lysine; Methylation; Mice, Inbred C57BL; Mice, Knockout; Phosphorylation; Polycomb Repressive Complex 1; Polycomb Repressive Complex 2; Promoter Regions, Genetic; Protein Binding; Proto-Oncogene Proteins; Proto-Oncogene Proteins c-akt; Signal Transduction

2017
MKL1 is an epigenetic mediator of TNF-α-induced proinflammatory transcription in macrophages by interacting with ASH2.
    FEBS letters, 2017, Volume: 591, Issue:6

    Topics: Adult; Amino Acid Sequence; Animals; Cell Line; Cell Line, Tumor; Cells, Cultured; Cytokines; DNA-Binding Proteins; Electrophoresis, Polyacrylamide Gel; Epigenesis, Genetic; Gene Expression Regulation; HEK293 Cells; Histones; Humans; Inflammation Mediators; Lysine; Macrophages; Male; Methylation; Mice, Knockout; NF-kappa B; Nuclear Proteins; Protein Binding; Reverse Transcriptase Polymerase Chain Reaction; Trans-Activators; Transcription Factors; Tumor Necrosis Factor-alpha

2017
Chromatin reader ZMYND8 is a key target of all trans retinoic acid-mediated inhibition of cancer cell proliferation.
    Biochimica et biophysica acta. Gene regulatory mechanisms, 2017, Volume: 1860, Issue:4

    Topics: Animals; Cell Line, Tumor; Cell Proliferation; Chromatin; Chromatin Immunoprecipitation; Fluorescent Antibody Technique; Histone Deacetylases; Histones; Humans; Lysine; Methylation; Mice; Neoplasms; Polymerase Chain Reaction; Promoter Regions, Genetic; Receptors for Activated C Kinase; Receptors, Cell Surface; Response Elements; RNA Polymerase II; Time Factors; Tretinoin; Tumor Suppressor Proteins; YY1 Transcription Factor

2017
TIRR regulates 53BP1 by masking its histone methyl-lysine binding function.
    Nature, 2017, 03-09, Volume: 543, Issue:7644

    Topics: Animals; Ataxia Telangiectasia Mutated Proteins; Binding Sites; Carrier Proteins; DNA Breaks, Double-Stranded; DNA Repair; Female; Histones; Humans; Lysine; Methylation; Mice; Mice, Inbred C57BL; Phosphorylation; Protein Binding; Protein Domains; RNA-Binding Proteins; Telomere-Binding Proteins; Tumor Suppressor p53-Binding Protein 1

2017
Hsp90 inhibition destabilizes Ezh2 protein in alloreactive T cells and reduces graft-versus-host disease in mice.
    Blood, 2017, 05-18, Volume: 129, Issue:20

    Topics: Animals; Enhancer of Zeste Homolog 2 Protein; Graft vs Host Disease; Hematopoiesis; Hematopoietic Stem Cell Transplantation; Histones; HSP90 Heat-Shock Proteins; Indoles; Isoxazoles; Lysine; Methylation; Mice, Inbred BALB C; Mice, Inbred C57BL; Minor Histocompatibility Antigens; Protein Domains; Protein Stability; Pyridones; Resorcinols; T-Lymphocytes; Transplantation, Homologous

2017
The SETD8/PR-Set7 Methyltransferase Functions as a Barrier to Prevent Senescence-Associated Metabolic Remodeling.
    Cell reports, 2017, 02-28, Volume: 18, Issue:9

    Topics: Cell Line; Cell Nucleolus; Cellular Senescence; Chromatin; Cyclin-Dependent Kinase Inhibitor p16; DNA Replication; Down-Regulation; Gene Expression Regulation; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation; Methyltransferases; Mitochondria; Ribosomal Proteins; RNA, Ribosomal

2017
EZH1 in germ cells safeguards the function of PRC2 during spermatogenesis.
    Developmental biology, 2017, 04-15, Volume: 424, Issue:2

    Topics: Animals; Base Sequence; Enhancer of Zeste Homolog 2 Protein; Fertility; Gene Deletion; Genome; Histones; Lysine; Male; Methylation; Mice, Knockout; Mitosis; Models, Biological; Polycomb Repressive Complex 2; Spermatogenesis; Spermatozoa; Testis

2017
Enhancer-Mediated Oncogenic Function of the Menin Tumor Suppressor in Breast Cancer.
    Cell reports, 2017, 03-07, Volume: 18, Issue:10

    Topics: Breast Neoplasms; Cell Line, Tumor; Cell Proliferation; Enhancer Elements, Genetic; Estradiol; Estrogen Receptor alpha; Female; GATA3 Transcription Factor; Gene Expression Regulation, Neoplastic; Genomics; Hepatocyte Nuclear Factor 3-alpha; Histones; Humans; Lysine; Methylation; Oncogenes; Promoter Regions, Genetic; Protein Binding; Proto-Oncogene Proteins; Transcription, Genetic

2017
Comparative analyses identify molecular signature of MRI-classified SVZ-associated glioblastoma.
    Cell cycle (Georgetown, Tex.), 2017, Apr-18, Volume: 16, Issue:8

    Topics: Brain Neoplasms; Cell Line, Tumor; Epigenesis, Genetic; Gene Expression Profiling; Gene Expression Regulation, Neoplastic; Glioblastoma; Histones; Humans; Isocitrate Dehydrogenase; Lateral Ventricles; Lysine; Magnetic Resonance Imaging; Methylation; Mutation; Neoplastic Stem Cells; Neural Stem Cells; Sequence Analysis, RNA

2017
MacroH2A histone variants maintain nuclear organization and heterochromatin architecture.
    Journal of cell science, 2017, 05-01, Volume: 130, Issue:9

    Topics: Cell Nucleolus; HEK293 Cells; Hep G2 Cells; Heterochromatin; Histones; Humans; Lamin Type B; Lysine; Male; Methylation; Protein Binding

2017
Histone peptide microarray screen of chromo and Tudor domains defines new histone lysine methylation interactions.
    Epigenetics & chromatin, 2017, Volume: 10

    Topics: Cell Cycle Proteins; Chromobox Protein Homolog 5; Chromosomal Proteins, Non-Histone; HEK293 Cells; Histones; Humans; Lysine; Methylation; Microtubule-Associated Proteins; Phosphoproteins; Protein Array Analysis; Protein Interaction Domains and Motifs; Tudor Domain

2017
Chromatin modification contributes to the expression divergence of three TaGS2 homoeologs in hexaploid wheat.
    Scientific reports, 2017, 03-16, Volume: 7

    Topics: Chromatin; Chromatin Immunoprecipitation; DNA Methylation; Exons; Gene Expression Regulation, Plant; Genes, Plant; Histones; Lysine; Methylation; Plant Leaves; Plant Proteins; Plant Roots; Polyploidy; RNA, Messenger; Sequence Homology, Amino Acid; Time Factors; Triticum

2017
Regulatory signatures of liver regeneration distilled by integrative analysis of mRNA, histone methylation, and proteomics.
    The Journal of biological chemistry, 2017, 05-12, Volume: 292, Issue:19

    Topics: Amino Acid Motifs; Animals; Carcinoma, Hepatocellular; Cell Line, Tumor; Cell Proliferation; Epigenesis, Genetic; Forkhead Box Protein M1; Gene Expression Regulation; Histones; Liver; Liver Neoplasms; Liver Regeneration; Lysine; Male; Methylation; Mice; Mice, Inbred C57BL; Promoter Regions, Genetic; Proteome; RNA, Messenger; Transcriptome

2017
Propagation of Polycomb-repressed chromatin requires sequence-specific recruitment to DNA.
    Science (New York, N.Y.), 2017, 04-07, Volume: 356, Issue:6333

    Topics: Animals; Chromatin; DNA; DNA Replication; Drosophila melanogaster; Drosophila Proteins; Gene Expression Regulation; Genes, Homeobox; Genes, Reporter; Histones; Lysine; Methylation; Nucleosomes; Polycomb Repressive Complex 2; Response Elements

2017
Causal role for inheritance of H3K27me3 in maintaining the OFF state of a
    Science (New York, N.Y.), 2017, 04-07, Volume: 356, Issue:6333

    Topics: Animals; Cell Division; Chromatin; Drosophila melanogaster; Drosophila Proteins; Gene Expression Regulation, Developmental; Gene Silencing; Genes, Homeobox; Histone-Lysine N-Methyltransferase; Histones; Homeodomain Proteins; Lysine; Methylation; Nucleosomes; Promoter Regions, Genetic; Transcription Factors

2017
Reprogramming of histone methylation controls the differentiation of monocytes into macrophages.
    The FEBS journal, 2017, Volume: 284, Issue:9

    Topics: Animals; Bone Marrow Cells; Cell Differentiation; Cell Line, Tumor; Cells, Cultured; Chromatin Immunoprecipitation; Epigenesis, Genetic; Forkhead Transcription Factors; Gene Expression Regulation, Developmental; Histones; Homeodomain Proteins; Humans; Kruppel-Like Factor 4; Lysine; Macrophages; Methylation; Mice, Inbred C57BL; Monocytes; Promoter Regions, Genetic; Protein Processing, Post-Translational; RNA Interference; Specific Pathogen-Free Organisms; Transcription Factors

2017
Foxh1 Occupies cis-Regulatory Modules Prior to Dynamic Transcription Factor Interactions Controlling the Mesendoderm Gene Program.
    Developmental cell, 2017, 03-27, Volume: 40, Issue:6

    Topics: Animals; Blastula; Cleavage Stage, Ovum; Co-Repressor Proteins; Embryo, Nonmammalian; Endoderm; Enhancer Elements, Genetic; Forkhead Transcription Factors; Gene Expression Regulation, Developmental; Genome; Histones; Lysine; Mesoderm; Methylation; Nodal Protein; Protein Binding; Regulatory Sequences, Nucleic Acid; RNA Polymerase II; RNA, Messenger; Sequence Analysis, RNA; Signal Transduction; Transcription Factors; Transcription, Genetic; Xenopus; Xenopus Proteins

2017
Trimethylation and Acetylation of β-Catenin at Lysine 49 Represent Key Elements in ESC Pluripotency.
    Cell reports, 2017, 03-21, Volume: 18, Issue:12

    Topics: Acetylation; Animals; Antibodies, Monoclonal; beta Catenin; Cell Differentiation; Embryonic Stem Cells; Enhancer of Zeste Homolog 2 Protein; Gene Expression Regulation; Lysine; Methylation; Mutation; Pluripotent Stem Cells; Polycomb Repressive Complex 2; Promoter Regions, Genetic; Rats, Inbred Lew

2017
ERRα induces H3K9 demethylation by LSD1 to promote cell invasion.
    Proceedings of the National Academy of Sciences of the United States of America, 2017, 04-11, Volume: 114, Issue:15

    Topics: Cell Movement; ERRalpha Estrogen-Related Receptor; Gene Expression Regulation; HEK293 Cells; Histone Demethylases; Histones; Humans; Lysine; Matrix Metalloproteinase 1; Methylation; Promoter Regions, Genetic; Receptors, Estrogen; Transcription Initiation Site

2017
SMARCAD1 Contributes to the Regulation of Naive Pluripotency by Interacting with Histone Citrullination.
    Cell reports, 2017, 03-28, Volume: 18, Issue:13

    Topics: Animals; Base Sequence; Binding Sites; Cells, Cultured; Chromatin; Citrullination; DNA Helicases; Embryo, Mammalian; Embryonic Development; Embryonic Stem Cells; Epigenesis, Genetic; Female; Gene Knockdown Techniques; Genome; Histones; Lysine; Male; Methylation; Mice; Nuclear Proteins; Phenotype; Pluripotent Stem Cells; Protein Binding; Protein Processing, Post-Translational; Transcriptome

2017
A Metabolic Function for Phospholipid and Histone Methylation.
    Molecular cell, 2017, Apr-20, Volume: 66, Issue:2

    Topics: Cysteine; Energy Metabolism; Gene Expression Profiling; Gene Expression Regulation, Enzymologic; Gene Expression Regulation, Fungal; Histones; Lysine; Methylation; Mutation; Oxidative Stress; Phosphatidylcholines; Phosphatidylethanolamine N-Methyltransferase; Phosphatidylethanolamines; Protein Phosphatase 2; Protein Processing, Post-Translational; S-Adenosylhomocysteine; S-Adenosylmethionine; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins; Time Factors; Transcription, Genetic

2017
Mono-unsaturated fatty acids link H3K4me3 modifiers to C. elegans lifespan.
    Nature, 2017, 04-13, Volume: 544, Issue:7649

    Topics: Aging; Animals; Caenorhabditis elegans; Dietary Fats; Down-Regulation; Fatty Acid Desaturases; Fatty Acids, Unsaturated; Gene Expression Regulation, Enzymologic; Germ Cells; Histone-Lysine N-Methyltransferase; Histones; Intestinal Mucosa; Intestines; Lipid Metabolism; Longevity; Lysine; Methylation; Ribosomal Protein S6 Kinases, 70-kDa; Stearoyl-CoA Desaturase; Up-Regulation

2017
Human METTL12 is a mitochondrial methyltransferase that modifies citrate synthase.
    FEBS letters, 2017, Volume: 591, Issue:12

    Topics: Amino Acid Sequence; Catalytic Domain; Citrate (si)-Synthase; Computational Biology; Conserved Sequence; CRISPR-Cas Systems; Frameshift Mutation; HEK293 Cells; Humans; Lysine; Methylation; Methyltransferases; Mitochondria; Protein Interaction Domains and Motifs; Protein Processing, Post-Translational; Protein Structure, Secondary; Protein Transport; Recombinant Fusion Proteins; Substrate Specificity; Surface Properties

2017
Reduced Histone H3 Lysine 9 Methylation Contributes to the Pathogenesis of Latent Autoimmune Diabetes in Adults via Regulation of SUV39H2 and KDM4C.
    Journal of diabetes research, 2017, Volume: 2017

    Topics: Adult; Case-Control Studies; CD4-Positive T-Lymphocytes; Diabetes Mellitus, Type 1; Down-Regulation; Female; Gene Expression Profiling; Gene Expression Regulation, Enzymologic; Glycated Hemoglobin; Glycosylation; Histone-Lysine N-Methyltransferase; Histones; Humans; Jumonji Domain-Containing Histone Demethylases; Lysine; Male; Methylation; Middle Aged

2017
Polycomb Repressive Complex 2-Mediated Chromatin Repression Guides Effector CD8
    Immunity, 2017, 04-18, Volume: 46, Issue:4

    Topics: Animals; CD8-Positive T-Lymphocytes; Cell Differentiation; Chromatin; Enhancer of Zeste Homolog 2 Protein; Flow Cytometry; Forkhead Box Protein O1; Gene Expression; Histones; Immunoblotting; Immunologic Memory; Lysine; Methylation; Mice, Inbred C57BL; Mice, Knockout; Mice, Transgenic; Models, Immunological; Multipotent Stem Cells; Polycomb Repressive Complex 2; Reverse Transcriptase Polymerase Chain Reaction

2017
Lysine-specific demethylase-1 (LSD1) depletion disrupts monogenic and monoallelic odorant receptor (OR) expression in an olfactory neuronal cell line.
    Molecular and cellular neurosciences, 2017, Volume: 82

    Topics: Animals; Cell Line; Gene Expression; Histone Demethylases; Histones; Lysine; Methylation; Mice; Olfactory Receptor Neurons; Receptors, Odorant; Smell

2017
Transgenerational transmission of environmental information in
    Science (New York, N.Y.), 2017, 04-21, Volume: 356, Issue:6335

    Topics: Animals; Caenorhabditis elegans; Caenorhabditis elegans Proteins; Environment; Environmental Biomarkers; Epigenesis, Genetic; Female; Heterochromatin; Histone-Lysine N-Methyltransferase; Histones; Hot Temperature; Lysine; Male; Methylation; Oligonucleotide Array Sequence Analysis; Oocytes; Spermatozoa; Transcription, Genetic; Zygote

2017
Total chemical synthesis of methylated analogues of histone 3 revealed KDM4D as a potential regulator of H3K79me3.
    Bioorganic & medicinal chemistry, 2017, 09-15, Volume: 25, Issue:18

    Topics: Amino Acid Sequence; Catalysis; Chromatography, High Pressure Liquid; Coordination Complexes; Histones; Jumonji Domain-Containing Histone Demethylases; Lysine; Methylation

2017
SDG2-Mediated H3K4me3 Is Crucial for Chromatin Condensation and Mitotic Division during Male Gametogenesis in Arabidopsis.
    Plant physiology, 2017, Volume: 174, Issue:2

    Topics: Arabidopsis; Arabidopsis Proteins; Cell Nucleus; Chromatin; Gametogenesis, Plant; Gene Expression Regulation, Plant; Germination; Heterochromatin; Histones; Lysine; Meiosis; Methylation; Mitosis; Mutation; Pollen; Pollen Tube; Retroelements

2017
Use of Histone K-M Mutants for the Analysis of Transcriptional Regulation in Mouse Zygotes.
    Methods in molecular biology (Clifton, N.J.), 2017, Volume: 1605

    Topics: Amino Acid Substitution; Animals; Epigenesis, Genetic; Gene Expression Regulation, Developmental; Histone Code; Histones; Lysine; Methionine; Methylation; Mice; Mutation; Transcriptional Activation; Zygote

2017
SMYD2-Mediated Histone Methylation Contributes to HIV-1 Latency.
    Cell host & microbe, 2017, May-10, Volume: 21, Issue:5

    Topics: CD4-Positive T-Lymphocytes; Cell Line; Chromatin; Chromosomal Proteins, Non-Histone; DNA, Recombinant; Female; HEK293 Cells; Histone-Lysine N-Methyltransferase; Histones; HIV-1; Humans; Lysine; Methylation; Promoter Regions, Genetic; Repressor Proteins; RNA, Small Interfering; T-Lymphocytes; Tumor Suppressor Proteins; Virus Latency

2017
Proteins with Site-Specific Lysine Methylation.
    Chemistry (Weinheim an der Bergstrasse, Germany), 2017, Sep-04, Volume: 23, Issue:49

    Topics: Chromatin; Histones; Humans; Lysine; Methylation; Proteins

2017
Temporal dynamics of gene expression and histone marks at the Arabidopsis shoot meristem during flowering.
    Nature communications, 2017, 05-17, Volume: 8

    Topics: Arabidopsis; Chromatin; Flowers; Gene Expression Profiling; Gene Expression Regulation, Plant; Genes, Plant; Histone Code; Histones; Lysine; Meristem; Methylation; Time Factors

2017
Methylation of human eukaryotic elongation factor alpha (eEF1A) by a member of a novel protein lysine methyltransferase family modulates mRNA translation.
    Nucleic acids research, 2017, Aug-21, Volume: 45, Issue:14

    Topics: Amino Acid Sequence; Base Sequence; Cell Line; Electrophoresis, Polyacrylamide Gel; Eukaryotic Initiation Factor-1; Gene Knockout Techniques; Histone-Lysine N-Methyltransferase; Humans; Lysine; Methylation; Methyltransferases; Phylogeny; Protein Biosynthesis; RNA, Messenger; Sequence Homology, Amino Acid

2017
MORC-1 Integrates Nuclear RNAi and Transgenerational Chromatin Architecture to Promote Germline Immortality.
    Developmental cell, 2017, 05-22, Volume: 41, Issue:4

    Topics: Animals; Caenorhabditis elegans; Caenorhabditis elegans Proteins; Cell Nucleus; Chromatin; Genome; Germ Cells; Heterochromatin; Histones; Inheritance Patterns; Lysine; Methylation; Models, Biological; Mutation; Nuclear Proteins; RNA Interference; RNA, Small Interfering

2017
DNA damage and S phase-dependent E2F1 stabilization requires the cIAP1 E3-ubiquitin ligase and is associated with K63-poly-ubiquitination on lysine 161/164 residues.
    Cell death & disease, 2017, 05-25, Volume: 8, Issue:5

    Topics: Animals; Arginine; DNA Damage; E2F1 Transcription Factor; Humans; Inhibitor of Apoptosis Proteins; Lysine; Methylation; Mice; Polyubiquitin; Protein Stability; S Phase; Structure-Activity Relationship; Transcription, Genetic; Ubiquitin-Protein Ligases; Ubiquitination

2017
Cross-talk between the H3K36me3 and H4K16ac histone epigenetic marks in DNA double-strand break repair.
    The Journal of biological chemistry, 2017, 07-14, Volume: 292, Issue:28

    Topics: Acetylation; Adaptor Proteins, Signal Transducing; Biomarkers; Cell Line, Tumor; Chromatin; CRISPR-Cas Systems; DNA; DNA Breaks, Double-Stranded; DNA Repair; Epigenesis, Genetic; Gene Knockout Techniques; HEK293 Cells; Histone Acetyltransferases; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Lysine Acetyltransferase 5; Methylation; Protein Processing, Post-Translational; Protein Transport; Recombinant Proteins; RNA Interference; Transcription Factors

2017
Hyperactivation of HUSH complex function by Charcot-Marie-Tooth disease mutation in MORC2.
    Nature genetics, 2017, Volume: 49, Issue:7

    Topics: Adenosine Triphosphatases; Charcot-Marie-Tooth Disease; Chromatin Assembly and Disassembly; CRISPR-Cas Systems; Epigenetic Repression; Gene Silencing; HeLa Cells; Heterochromatin; Histone Code; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation; Multiprotein Complexes; Mutation, Missense; Neurons; Protein Domains; Protein Interaction Mapping; Protein Methyltransferases; Protein Processing, Post-Translational; Transcription Factors; Transgenes

2017
Arabidopsis FRIGIDA stimulates EFS histone H3 Lys36 methyltransferase activity.
    Plant cell reports, 2017, Volume: 36, Issue:7

    Topics: Amino Acid Sequence; Arabidopsis; Arabidopsis Proteins; Blotting, Western; Histone-Lysine N-Methyltransferase; Histones; Kinetics; Lysine; Methylation; Mutation; Sequence Homology, Amino Acid; Substrate Specificity

2017
LSD1 knockdown reveals novel histone lysine methylation in human breast cancer MCF-7 cells.
    Biomedicine & pharmacotherapy = Biomedecine & pharmacotherapie, 2017, Volume: 92

    Topics: Amino Acid Sequence; Female; Gene Knockdown Techniques; Histone Code; Histone Demethylases; Histones; Humans; Lysine; MCF-7 Cells; Methylation; Promoter Regions, Genetic; Protein Processing, Post-Translational; Tandem Mass Spectrometry; Transcription, Genetic

2017
Retrotransposons are specified as DNA replication origins in the gene-poor regions of Arabidopsis heterochromatin.
    Nucleic acids research, 2017, Aug-21, Volume: 45, Issue:14

    Topics: Arabidopsis; Cell Line; Chromatin; Chromosome Mapping; DNA Replication; DNA, Plant; GC Rich Sequence; Genome, Plant; Heterochromatin; Histones; Lysine; Methylation; Microscopy, Confocal; Replication Origin; Retroelements; Reverse Transcriptase Polymerase Chain Reaction; Transcription, Genetic

2017
Polycomb repressive complex 2 in an autoinhibited state.
    The Journal of biological chemistry, 2017, 08-11, Volume: 292, Issue:32

    Topics: Amino Acid Sequence; Amino Acid Substitution; Animals; Apoenzymes; Chaetomium; Coenzymes; Conserved Sequence; Enhancer of Zeste Homolog 2 Protein; Fungal Proteins; Histones; Lysine; Methylation; Models, Molecular; Mutation; Peptide Fragments; Polycomb Repressive Complex 2; Protein Interaction Domains and Motifs; Protein Processing, Post-Translational; Recombinant Fusion Proteins; S-Adenosylmethionine; Xenopus laevis; Xenopus Proteins

2017
Muscle-relevant genes marked by stable H3K4me2/3 profiles and enriched MyoD binding during myogenic differentiation.
    PloS one, 2017, Volume: 12, Issue:6

    Topics: Animals; Cell Differentiation; Cell Line; Cells, Cultured; Cluster Analysis; Fibroblasts; Gene Expression Profiling; Gene Ontology; HEK293 Cells; Histones; Humans; Lysine; Methylation; Mice; Muscle Development; Myoblasts; MyoD Protein; Neoplasm Proteins; Protein Binding; Repressor Proteins; Reverse Transcriptase Polymerase Chain Reaction

2017
Intricate Effects of α-Amino and Lysine Modifications on Arginine Methylation of the N-Terminal Tail of Histone H4.
    Biochemistry, 2017, 07-18, Volume: 56, Issue:28

    Topics: Acetylation; Acylation; Amino Acid Sequence; Arginine; Histones; Humans; Lysine; Membrane Proteins; Methylation; Protein Processing, Post-Translational; Protein-Arginine N-Methyltransferases; Recombinant Proteins; Repressor Proteins

2017
Environmental change drives accelerated adaptation through stimulated copy number variation.
    PLoS biology, 2017, Volume: 15, Issue:6

    Topics: Adaptation, Physiological; Copper; DNA Copy Number Variations; Drug Resistance; Gene Expression Profiling; Gene Expression Regulation, Developmental; Gene Expression Regulation, Fungal; Histones; Lysine; Metallothionein; Methylation; Models, Genetic; Mutation; Promoter Regions, Genetic; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins; Signal Transduction

2017
RBM25 is a global splicing factor promoting inclusion of alternatively spliced exons and is itself regulated by lysine mono-methylation.
    The Journal of biological chemistry, 2017, 08-11, Volume: 292, Issue:32

    Topics: Alternative Splicing; Cell Line; Cell Proliferation; Cell Survival; Exons; Gene Expression Profiling; Gene Expression Regulation; High-Throughput Nucleotide Sequencing; Humans; Immobilized Proteins; Immunoprecipitation; Lysine; Methylation; Nuclear Proteins; Protein Interaction Domains and Motifs; Protein Processing, Post-Translational; Proteomics; Recombinant Fusion Proteins; RNA Precursors; RNA-Binding Proteins; RNA, Messenger; Serine-Arginine Splicing Factors; Spliceosomes

2017
METTL21B Is a Novel Human Lysine Methyltransferase of Translation Elongation Factor 1A: Discovery by CRISPR/Cas9 Knockout.
    Molecular & cellular proteomics : MCP, 2017, Volume: 16, Issue:12

    Topics: Catalytic Domain; CRISPR-Cas Systems; Gene Knockout Techniques; Humans; K562 Cells; Lysine; Methylation; Methyltransferases; Models, Molecular; Peptide Elongation Factor 1; Protein Conformation; Proteomics

2017
SETD2 and histone H3 lysine 36 methylation deficiency in advanced systemic mastocytosis.
    Leukemia, 2018, Volume: 32, Issue:1

    Topics: Adult; Aged; Apoptosis; Cell Line, Tumor; Female; Histone-Lysine N-Methyltransferase; Histones; Humans; K562 Cells; Lysine; Male; Mast Cells; Mastocytosis; Mastocytosis, Systemic; Methylation; Middle Aged; Mutation; Prognosis; Proteasome Endopeptidase Complex; Staurosporine

2018
Correlation Between Expression of Recombinant Proteins and Abundance of H3K4Me3 on the Enhancer of Human Cytomegalovirus Major Immediate-Early Promoter.
    Molecular biotechnology, 2017, Volume: 59, Issue:8

    Topics: Animals; CHO Cells; Cricetinae; Cricetulus; Cytomegalovirus; DNA Methylation; Enhancer Elements, Genetic; Gene Dosage; Genes, Immediate-Early; Histones; Humans; Lysine; Methylation; Promoter Regions, Genetic; Recombinant Proteins; RNA, Messenger; Trastuzumab

2017
The extraordinary thermal stability of EstA from S. islandicus is independent of post translational modifications.
    Protein science : a publication of the Protein Society, 2017, Volume: 26, Issue:9

    Topics: Archaeal Proteins; Carboxylic Ester Hydrolases; Escherichia coli; Lysine; Methylation; Protein Processing, Post-Translational; Protein Stability; Recombinant Proteins; Sulfolobus

2017
Acetylation and methylation profiles of H3K27 in porcine embryos cultured in vitro.
    Zygote (Cambridge, England), 2017, Volume: 25, Issue:5

    Topics: Acetylation; Animals; Blastocyst; Embryo Culture Techniques; Embryo, Mammalian; Female; Histones; Lysine; Methylation; Oocytes; Swine; Zygote

2017
Full-length nisin immunity protein NisI from Lactococcus lactis in a lipid-free form: crystallization and X-ray analysis.
    Acta crystallographica. Section F, Structural biology communications, 2017, Jul-01, Volume: 73, Issue:Pt 7

    Topics: Amino Acid Sequence; Bacterial Proteins; Cloning, Molecular; Crystallization; Crystallography, X-Ray; Escherichia coli; Gene Expression; Genetic Vectors; Lactococcus lactis; Lipoproteins; Lysine; Membrane Proteins; Methylation; Nisin; Oxidation-Reduction; Protein Binding; Recombinant Fusion Proteins; X-Ray Diffraction

2017
Discovery of Novel Human Gene Regulatory Modules from Gene Co-expression and Promoter Motif Analysis.
    Scientific reports, 2017, 07-17, Volume: 7, Issue:1

    Topics: CCAAT-Binding Factor; Epigenesis, Genetic; Gene Expression Regulation; Gene Regulatory Networks; Humans; Interferon Regulatory Factor-1; Lysine; Methylation; Nucleotide Motifs; Oligonucleotide Array Sequence Analysis; Promoter Regions, Genetic; Regulatory Factor X1; Sp1 Transcription Factor; YY1 Transcription Factor

2017
Tryptic Peptides Bearing C-Terminal Dimethyllysine Need to Be Considered during the Analysis of Lysine Dimethylation in Proteomic Study.
    Journal of proteome research, 2017, 09-01, Volume: 16, Issue:9

    Topics: Amino Acid Sequence; Animals; Cattle; Chromatography, High Pressure Liquid; HeLa Cells; Humans; Isotope Labeling; Kinetics; Lysine; Methylation; Peptide Fragments; Protein Processing, Post-Translational; Proteolysis; Proteomics; Serine Endopeptidases; Serum Albumin, Bovine; Serum Albumin, Human; Tandem Mass Spectrometry; Trypsin

2017
Drosophila Histone Demethylase KDM4A Has Enzymatic and Non-enzymatic Roles in Controlling Heterochromatin Integrity.
    Developmental cell, 2017, 07-24, Volume: 42, Issue:2

    Topics: Animals; Biocatalysis; Cell Cycle; Cell Cycle Checkpoints; Chromosomal Position Effects; DNA Breaks, Double-Stranded; DNA Repair; Drosophila melanogaster; Drosophila Proteins; Fertility; Gene Expression Regulation; Gene Silencing; Heterochromatin; Histone Demethylases; Histones; Lysine; Methylation; Mutation; Protein Domains; Transcription, Genetic

2017
Methylation, crystallization and SAD phasing of the Csu pilus CsuC-CsuE chaperone-adhesin subunit pre-assembly complex from Acinetobacter baumannii.
    Acta crystallographica. Section F, Structural biology communications, 2017, Aug-01, Volume: 73, Issue:Pt 8

    Topics: Acinetobacter baumannii; Adhesins, Bacterial; Amino Acid Sequence; Cloning, Molecular; Crystallization; Crystallography, X-Ray; Escherichia coli; Fimbriae, Bacterial; Gene Expression; Genetic Vectors; Lysine; Methylation; Molecular Chaperones; Polyethylene Glycols; Protein Binding; Protein Subunits; Recombinant Proteins; X-Ray Diffraction

2017
MicroRNA-125b is a key epigenetic regulatory factor that promotes nuclear transfer reprogramming.
    The Journal of biological chemistry, 2017, 09-22, Volume: 292, Issue:38

    Topics: Animals; Base Sequence; Epigenesis, Genetic; Gene Expression Regulation; HEK293 Cells; Hepatocyte Nuclear Factor 1-beta; Heterochromatin; Histones; Humans; Lysine; Methylation; Methyltransferases; Mice; MicroRNAs; Nuclear Transfer Techniques; Repressor Proteins

2017
Methylation of DNA Ligase 1 by G9a/GLP Recruits UHRF1 to Replicating DNA and Regulates DNA Methylation.
    Molecular cell, 2017, Aug-17, Volume: 67, Issue:4

    Topics: Animals; CCAAT-Enhancer-Binding Proteins; DNA; DNA Ligase ATP; DNA Methylation; DNA Replication; Embryonic Stem Cells; Epigenesis, Genetic; HEK293 Cells; HeLa Cells; Histocompatibility Antigens; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation; Mice; Models, Molecular; Molecular Mimicry; Mutation; Protein Binding; Protein Conformation; Protein Processing, Post-Translational; Structure-Activity Relationship; Transfection; Tudor Domain; Ubiquitin-Protein Ligases

2017
PHF20 positively regulates osteoblast differentiation via increasing the expression and activation of Runx2 with enrichment of H3K4me3.
    Scientific reports, 2017, 08-14, Volume: 7, Issue:1

    Topics: Animals; Cell Differentiation; Cells, Cultured; Core Binding Factor Alpha 1 Subunit; DNA-Binding Proteins; HEK293 Cells; Histones; Homeodomain Proteins; Humans; Lysine; Methylation; Mice; Osteoblasts; Osteogenesis; Promoter Regions, Genetic; Transcription Factors

2017
Inhibition of EZH2 Promotes Human Embryonic Stem Cell Differentiation into Mesoderm by Reducing H3K27me3.
    Stem cell reports, 2017, 09-12, Volume: 9, Issue:3

    Topics: Cell Differentiation; Cell Lineage; Cellular Reprogramming; Enhancer of Zeste Homolog 2 Protein; Gene Ontology; Histones; Human Embryonic Stem Cells; Humans; Indoles; Lysine; Mesenchymal Stem Cells; Mesoderm; Methylation; Multigene Family; Pyridones; Transcriptome

2017
Tudor-domain protein PHF20L1 reads lysine methylated retinoblastoma tumour suppressor protein.
    Cell death and differentiation, 2017, Volume: 24, Issue:12

    Topics: Cell Cycle; Cell Line, Tumor; Chromosomal Proteins, Non-Histone; Genes, Tumor Suppressor; Histone Acetyltransferases; Humans; Lysine; MCF-7 Cells; Methylation; Retinoblastoma Protein; Transfection; Tumor Suppressor p53-Binding Protein 1

2017
Oocyte-derived histone H3 lysine 27 methylation controls gene expression in the early embryo.
    Nature structural & molecular biology, 2017, 09-07, Volume: 24, Issue:9

    Topics: Animals; Drosophila; Embryo, Mammalian; Gene Expression Regulation, Developmental; Genomic Imprinting; Histone Code; Histones; Lysine; Methylation; Mice; Oocytes

2017
Lysine trimethylation regulates 78-kDa glucose-regulated protein proteostasis during endoplasmic reticulum stress.
    The Journal of biological chemistry, 2017, 11-17, Volume: 292, Issue:46

    Topics: Animals; Cell Line; DNA Modification Methylases; Endoplasmic Reticulum Chaperone BiP; Endoplasmic Reticulum Stress; Heat-Shock Proteins; Lysine; Methylation; Mice; Podocytes; Proteolysis; Unfolded Protein Response

2017
Accumulation of histone variant H3.3 with age is associated with profound changes in the histone methylation landscape.
    Nucleic acids research, 2017, Sep-19, Volume: 45, Issue:16

    Topics: Aging; Animals; Carcinoma, Hepatocellular; Cells, Cultured; Hepatocytes; Histone Code; Histones; Humans; Liver Neoplasms; Lysine; Male; Methylation; Mice, Inbred C57BL; Protein Isoforms; Protein Processing, Post-Translational

2017
Metabolically Derived Lysine Acylations and Neighboring Modifications Tune the Binding of the BET Bromodomains to Histone H4.
    Biochemistry, 2017, 10-17, Volume: 56, Issue:41

    Topics: Acylation; Animals; Cell Cycle Proteins; Cell Line; Chickens; Histones; Ligands; Lysine; Methylation; Models, Molecular; Molecular Docking Simulation; Nuclear Proteins; Nucleosomes; Oligopeptides; Peptide Fragments; Phosphorylation; Protein Array Analysis; Protein Interaction Domains and Motifs; Protein Processing, Post-Translational; Protein Serine-Threonine Kinases; Recombinant Fusion Proteins; RNA-Binding Proteins; Transcription Factors

2017
Two-domain analysis of JmjN-JmjC and PHD-JmjC lysine demethylases: Detecting an inter-domain evolutionary stress.
    Proteins, 2018, Volume: 86, Issue:1

    Topics: Amino Acid Sequence; Databases, Protein; Histone Demethylases; Histones; Humans; Lysine; Methylation; Models, Molecular; Molecular Structure; Protein Domains; Sequence Alignment; Structure-Activity Relationship

2018
Computational characterization of substrate and product specificities, and functionality of S-adenosylmethionine binding pocket in histone lysine methyltransferases from Arabidopsis, rice and maize.
    Proteins, 2018, Volume: 86, Issue:1

    Topics: Arabidopsis; Binding Sites; Catalysis; Databases, Protein; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation; Models, Chemical; Molecular Structure; Oryza; Plant Proteins; Protein Binding; Protein Conformation; Protein Processing, Post-Translational; S-Adenosylmethionine; Sequence Analysis, Protein; Substrate Specificity; Zea mays

2018
Functional analysis of methyltransferases participating in streptothricin-related antibiotic biosynthesis.
    Journal of bioscience and bioengineering, 2018, Volume: 125, Issue:2

    Topics: Amino Acids; Anti-Bacterial Agents; Biosynthetic Pathways; Genes, Bacterial; Hydrolases; Lysine; Methylation; Methyltransferases; Multigene Family; Streptomyces; Streptothricins

2018
Proteomic identification of histone post-translational modifications and proteins enriched at a DNA double-strand break.
    Nucleic acids research, 2017, Nov-02, Volume: 45, Issue:19

    Topics: Chromosomal Proteins, Non-Histone; DNA Breaks, Double-Stranded; DNA Repair; Histones; Lysine; Mass Spectrometry; Methylation; Nuclear Proteins; Protein Phosphatase 2; Protein Processing, Post-Translational; Proteome; Proteomics; RNA-Binding Proteins; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins; Ubiquitin-Protein Ligases

2017
Transcription factor 19 interacts with histone 3 lysine 4 trimethylation and controls gluconeogenesis via the nucleosome-remodeling-deacetylase complex.
    The Journal of biological chemistry, 2017, 12-15, Volume: 292, Issue:50

    Topics: Cell Line; Epigenesis, Genetic; Gene Expression Regulation, Enzymologic; Gluconeogenesis; Hepatocytes; Histones; Humans; Lysine; Methylation; Mi-2 Nucleosome Remodeling and Deacetylase Complex; Models, Molecular; Molecular Docking Simulation; Mutagenesis, Site-Directed; Mutation; Peptide Fragments; Promoter Regions, Genetic; Protein Conformation; Protein Interaction Domains and Motifs; Protein Processing, Post-Translational; Protein Transport; Recombinant Proteins; Transcription Factors

2017
UTX/KDM6A Loss Enhances the Malignant Phenotype of Multiple Myeloma and Sensitizes Cells to EZH2 inhibition.
    Cell reports, 2017, Oct-17, Volume: 21, Issue:3

    Topics: Animals; Carcinogenesis; Cell Adhesion; Cell Dedifferentiation; Cell Line, Tumor; Cell Proliferation; Cell Survival; Clone Cells; Enhancer of Zeste Homolog 2 Protein; Gene Expression Profiling; Gene Expression Regulation, Neoplastic; Histone Demethylases; Histones; Indazoles; Interferon Regulatory Factors; Lysine; Methylation; Mice; Mice, Inbred NOD; Mice, SCID; Multiple Myeloma; Mutation; Nuclear Proteins; Phenotype; Pyridones; Transcription, Genetic

2017
Lysine methylation signaling in pancreatic cancer.
    Current opinion in oncology, 2018, Volume: 30, Issue:1

    Topics: Animals; Histone-Lysine N-Methyltransferase; Humans; Lysine; MAP Kinase Signaling System; Methylation; Pancreatic Neoplasms; Signal Transduction

2018
The methyltransferase NSD3 promotes antiviral innate immunity via direct lysine methylation of IRF3.
    The Journal of experimental medicine, 2017, Dec-04, Volume: 214, Issue:12

    Topics: Animals; Antiviral Agents; Cell Nucleus; HEK293 Cells; Histone-Lysine N-Methyltransferase; Humans; Immunity, Innate; Interferon Regulatory Factor-3; Lysine; Macrophages; Methylation; Mice, Inbred C57BL; Nuclear Proteins; Phosphoprotein Phosphatases; Phosphorylation; Protein Binding; Transcription, Genetic; Vesiculovirus

2017
Rapid Communication: The correlation between histone modifications and expression of key genes involved in accumulation of adipose tissue in the pig.
    Journal of animal science, 2017, Volume: 95, Issue:10

    Topics: Acetylation; Adipose Tissue; Animals; Epigenesis, Genetic; Gene Expression Regulation; Histone Code; Histones; Lysine; Methylation; Swine

2017
Increased Post-Translational Lysine Acetylation of Myelin Basic Protein Is Associated with Peak Neurological Disability in a Mouse Experimental Autoimmune Encephalomyelitis Model of Multiple Sclerosis.
    Journal of proteome research, 2018, 01-05, Volume: 17, Issue:1

    Topics: Acetylation; Animals; Encephalomyelitis, Autoimmune, Experimental; Histone Deacetylase Inhibitors; Hydroxamic Acids; Lysine; Methylation; Mice; Multiple Sclerosis; Myelin Basic Protein; Nervous System Diseases; Protein Processing, Post-Translational

2018
NSD3 keeps IRF3 active.
    The Journal of experimental medicine, 2017, 12-04, Volume: 214, Issue:12

    Topics: Antiviral Agents; Immunity, Innate; Interferon Regulatory Factor-3; Lysine; Methylation; Methyltransferases

2017
H4K20me2 distinguishes pre-replicative from post-replicative chromatin to appropriately direct DNA repair pathway choice by 53BP1-RIF1-MAD2L2.
    Cell cycle (Georgetown, Tex.), 2018, Volume: 17, Issue:1

    Topics: BRCA1 Protein; Chromatin; Cyclin-Dependent Kinases; DNA Breaks, Double-Stranded; DNA Repair; DNA Replication; G2 Phase; HeLa Cells; Histones; Humans; Lysine; Mad2 Proteins; Methylation; Models, Biological; Protein Binding; Telomere-Binding Proteins; Tumor Suppressor p53-Binding Protein 1

2018
Shoring up DNA methylation and H3K27me3 domain demarcation at developmental genes.
    The EMBO journal, 2017, 12-01, Volume: 36, Issue:23

    Topics: DNA Methylation; Genes, Developmental; Histones; Lysine; Methylation

2017
    Science signaling, 2017, Nov-28, Volume: 10, Issue:507

    Topics: Arabidopsis; Arabidopsis Proteins; Cell Dedifferentiation; Epigenesis, Genetic; Gene Expression Regulation, Plant; Histone-Lysine N-Methyltransferase; Histones; Lysine; Methylation; Mutation; Promoter Regions, Genetic; Transcription Factors

2017
Investigating d-lysine stereochemistry for epigenetic methylation, demethylation and recognition.
    Chemical communications (Cambridge, England), 2017, Dec-12, Volume: 53, Issue:99

    Topics: Biocatalysis; Epigenesis, Genetic; Histone Demethylases; Lysine; Methylation; Methyltransferases; Models, Molecular; Molecular Conformation; Stereoisomerism; Thermodynamics

2017
Linking PHYTOCHROME-INTERACTING FACTOR to Histone Modification in Plant Shade Avoidance.
    Plant physiology, 2018, Volume: 176, Issue:2

    Topics: Acetylation; Arabidopsis; Arabidopsis Proteins; Chromatin; Chromosomal Proteins, Non-Histone; DNA-Binding Proteins; Gene Expression Regulation, Plant; Histones; Hypocotyl; Lysine; Methylation; Plants, Genetically Modified

2018
SnapShot: Lysine Methylation beyond Histones.
    Molecular cell, 2017, Dec-07, Volume: 68, Issue:5

    Topics: Animals; Histones; Humans; Lysine; Methylation; Protein Processing, Post-Translational; Signal Transduction

2017
Structure of the Arabidopsis JMJ14-H3K4me3 Complex Provides Insight into the Substrate Specificity of KDM5 Subfamily Histone Demethylases.
    The Plant cell, 2018, Volume: 30, Issue:1

    Topics: Amino Acid Sequence; Arabidopsis Proteins; Catalytic Domain; Conserved Sequence; Histone Demethylases; Histones; Humans; Jumonji Domain-Containing Histone Demethylases; Lysine; Methylation; Nuclear Proteins; Peptides; Protein Binding; Protein Domains; Repressor Proteins; Substrate Specificity

2018
Circular dichroism spectroscopic study on structural alterations of histones induced by post-translational modifications in DNA damage responses: lysine-9 methylation of H3.
    Journal of radiation research, 2018, Mar-01, Volume: 59, Issue:2

    Topics: Amino Acid Sequence; Animals; Circular Dichroism; DNA Damage; Histones; Humans; Lysine; Methylation; Protein Processing, Post-Translational; Protein Structure, Secondary; Solutions; Xenopus laevis

2018
Independence between pre-mRNA splicing and DNA methylation in an isogenic minigene resource.
    Nucleic acids research, 2017, Dec-15, Volume: 45, Issue:22

    Topics: Animals; Chromatin; DNA (Cytosine-5-)-Methyltransferases; DNA Methylation; DNA Methyltransferase 3B; Exons; Gene Expression Regulation; HEK293 Cells; Histones; Humans; Lysine; Methylation; Mice; Models, Genetic; RNA Precursors; RNA Splicing

2017
Trithorax-group proteins ARABIDOPSIS TRITHORAX4 (ATX4) and ATX5 function in abscisic acid and dehydration stress responses.
    The New phytologist, 2018, Volume: 217, Issue:4

    Topics: Abscisic Acid; Arabidopsis; Arabidopsis Proteins; Dehydration; Droughts; Gene Expression Regulation, Plant; Genetic Loci; Histone-Lysine N-Methyltransferase; Histones; Loss of Function Mutation; Lysine; Methylation; Organ Specificity; Plant Development; Stress, Physiological; Transcription, Genetic

2018
Asymmetrical changes of gene expression, small RNAs and chromatin in two resynthesized wheat allotetraploids.
    The Plant journal : for cell and molecular biology, 2018, Volume: 93, Issue:5

    Topics: Chromatin; Chromosomes, Plant; Endosperm; Gene Expression Regulation, Plant; Genome, Plant; Histones; Lysine; Methylation; Plant Roots; RNA, Messenger; RNA, Small Interfering; Tetraploidy; Triticum

2018
[Distributions of H3K27me3 and its modification enzymes in different tissues of mice].
    Xi bao yu fen zi mian yi xue za zhi = Chinese journal of cellular and molecular immunology, 2017, Volume: 33, Issue:11

    Topics: Age Factors; Animals; Animals, Newborn; Enhancer of Zeste Homolog 2 Protein; Gene Expression Profiling; Gene Expression Regulation, Enzymologic; Histone Demethylases; Histones; Immunohistochemistry; Jumonji Domain-Containing Histone Demethylases; Lysine; Male; Methylation; Mice, Inbred C57BL; Reverse Transcriptase Polymerase Chain Reaction

2017
Set2 methyltransferase facilitates cell cycle progression by maintaining transcriptional fidelity.
    Nucleic acids research, 2018, 02-16, Volume: 46, Issue:3

    Topics: Anaphase-Promoting Complex-Cyclosome; Biological Evolution; Cdc20 Proteins; Cell Cycle; Gene Expression Regulation, Fungal; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation; Methyltransferases; Nocodazole; Protein Processing, Post-Translational; Proteolysis; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins; Transcription, Genetic; Tubulin Modulators

2018
Histone demethylase KDM5A inhibits glioma cells migration and invasion by down regulating ZEB1.
    Biomedicine & pharmacotherapy = Biomedecine & pharmacotherapie, 2018, Volume: 99

    Topics: Biocatalysis; Biomarkers, Tumor; Cell Line, Tumor; Cell Movement; Down-Regulation; Epithelial-Mesenchymal Transition; Gene Expression Regulation, Neoplastic; Gene Knockdown Techniques; Glioma; Histones; Humans; Lysine; Methylation; Neoplasm Invasiveness; Neoplasm Metastasis; Promoter Regions, Genetic; Retinoblastoma-Binding Protein 2; Zinc Finger E-box-Binding Homeobox 1

2018
A Non-canonical BCOR-PRC1.1 Complex Represses Differentiation Programs in Human ESCs.
    Cell stem cell, 2018, 02-01, Volume: 22, Issue:2

    Topics: Cell Differentiation; Chromatin; F-Box Proteins; Histones; Human Embryonic Stem Cells; Humans; Jumonji Domain-Containing Histone Demethylases; Lysine; Methylation; Multiprotein Complexes; Polycomb Repressive Complex 1; Polycomb Repressive Complex 2; Promoter Regions, Genetic; Protein Domains; Proto-Oncogene Proteins; Repressor Proteins

2018
Canonical and Noncanonical Actions of Arabidopsis Histone Deacetylases in Ribosomal RNA Processing.
    The Plant cell, 2018, Volume: 30, Issue:1

    Topics: Acetylation; Amino Acid Sequence; Arabidopsis; Arabidopsis Proteins; Base Sequence; Gene Deletion; Genes, Plant; Genetic Pleiotropy; Histone Deacetylases; Histones; Lysine; Methylation; Models, Biological; Nicotiana; Organelle Biogenesis; Plants, Genetically Modified; Promoter Regions, Genetic; Protein Binding; Ribosomes; RNA Precursors; RNA Processing, Post-Transcriptional; RNA, Ribosomal; RNA, Small Nucleolar

2018
Role of METTL20 in regulating β-oxidation and heat production in mice under fasting or ketogenic conditions.
    Scientific reports, 2018, 01-19, Volume: 8, Issue:1

    Topics: Animals; Catalysis; CRISPR-Cas Systems; Electron-Transferring Flavoproteins; Fasting; Fatty Acids; Gene Editing; Humans; Ketone Bodies; Loss of Function Mutation; Lysine; Metabolomics; Methylation; Methyltransferases; Mice; Mice, Knockout; Mitochondria; Oxidation-Reduction; Oxygen Consumption; Substrate Specificity; Thermogenesis

2018
Mitochondrial translation requires folate-dependent tRNA methylation.
    Nature, 2018, 02-01, Volume: 554, Issue:7690

    Topics: Aminohydrolases; Biocatalysis; Carrier Proteins; Codon; Electron Transport; Folic Acid; Folic Acid Antagonists; Glycine Hydroxymethyltransferase; GTP-Binding Proteins; Guanosine; HCT116 Cells; HEK293 Cells; Humans; Leucine; Lysine; Methylation; Methylenetetrahydrofolate Dehydrogenase (NADP); Mitochondria; Multifunctional Enzymes; Oxidative Phosphorylation; Protein Biosynthesis; Ribosomes; RNA-Binding Proteins; RNA, Transfer; Sarcosine; Tetrahydrofolates; Thymine Nucleotides

2018
Identification of protein lysine methylation readers with a yeast three-hybrid approach.
    Epigenetics & chromatin, 2018, 01-25, Volume: 11, Issue:1

    Topics: Animals; Cell Line; Chromobox Protein Homolog 5; Chromosomal Proteins, Non-Histone; Cloning, Molecular; Epigenesis, Genetic; Gene Library; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation; Mice; Phosphoproteins; Protein Processing, Post-Translational; Two-Hybrid System Techniques

2018
Loss of ATRX suppresses ATM dependent DNA damage repair by modulating H3K9me3 to enhance temozolomide sensitivity in glioma.
    Cancer letters, 2018, 04-10, Volume: 419

    Topics: Animals; Antineoplastic Agents, Alkylating; Ataxia Telangiectasia Mutated Proteins; Brain Neoplasms; Cell Line, Tumor; Cell Survival; DNA Damage; DNA Repair; Female; Gene Expression Regulation, Neoplastic; Gene Knockout Techniques; Glioma; Histones; Humans; Lysine; Methylation; Mice, Nude; Temozolomide; X-linked Nuclear Protein; Xenograft Model Antitumor Assays

2018
The histone demethylase Jmjd3 regulates zebrafish myeloid development by promoting spi1 expression.
    Biochimica et biophysica acta. Gene regulatory mechanisms, 2018, Volume: 1861, Issue:2

    Topics: Animals; Animals, Genetically Modified; Cell Differentiation; Embryo, Nonmammalian; Gene Expression Regulation, Developmental; Gene Knockdown Techniques; Histones; Jumonji Domain-Containing Histone Demethylases; Lysine; Methylation; Myeloid Cells; Myelopoiesis; Proto-Oncogene Proteins; Trans-Activators; Zebrafish; Zebrafish Proteins

2018
Dynamic regulation of six histone H3 lysine (K) methyltransferases in response to prolonged anoxia exposure in a freshwater turtle.
    Gene, 2018, Apr-05, Volume: 649

    Topics: Animals; Fresh Water; Gene Expression Regulation; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Histones; Hypoxia; Liver; Lysine; Methylation; Methyltransferases; Oxygen; Protein Processing, Post-Translational; Turtles

2018
A liquid chromatography tandem mass spectroscopy approach for quantification of protein methylation stoichiometry.
    Analytical biochemistry, 2018, 03-15, Volume: 545

    Topics: Animals; Arginine; Cattle; Chromatography, Liquid; Humans; Lysine; Methylation; Proteins; Tandem Mass Spectrometry

2018
Contrasting roles of H3K4me3 and H3K9me3 in regulation of apoptosis and gemcitabine resistance in human pancreatic cancer cells.
    BMC cancer, 2018, 02-06, Volume: 18, Issue:1

    Topics: Antimetabolites, Antineoplastic; Apoptosis; Apoptosis Regulatory Proteins; Carcinoma, Pancreatic Ductal; Cell Line, Tumor; Deoxycytidine; Drug Resistance, Neoplasm; Epigenesis, Genetic; Gemcitabine; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Histones; Humans; Indoles; Lysine; Methylation; Pancreatic Neoplasms

2018
Epigenetic alterations contribute to promoter activity of imprinting gene IGF2.
    Biochimica et biophysica acta. Gene regulatory mechanisms, 2018, Volume: 1861, Issue:2

    Topics: Carcinoma, Hepatocellular; Cell Line, Tumor; DNA Methylation; Epigenesis, Genetic; Gene Expression Regulation, Neoplastic; Genomic Imprinting; Hep G2 Cells; Histone-Lysine N-Methyltransferase; Histones; Humans; Insulin-Like Growth Factor II; Liver Neoplasms; Lysine; Methylation; Myeloid-Lymphoid Leukemia Protein; Promoter Regions, Genetic; Proto-Oncogene Proteins

2018
Tandem Histone-Binding Domains Enhance the Activity of a Synthetic Chromatin Effector.
    ACS synthetic biology, 2018, 03-16, Volume: 7, Issue:3

    Topics: Chromatin; Gene Expression Regulation; Gene Silencing; HEK293 Cells; Histones; Humans; Ligands; Lysine; Methylation; Models, Molecular; Polycomb-Group Proteins; Protein Binding; Protein Domains; Recombinant Fusion Proteins; Transcription Factors; Transcription, Genetic

2018
Region specific knock-out reveals distinct roles of chromatin modifiers in adult neurogenic niches.
    Cell cycle (Georgetown, Tex.), 2018, Volume: 17, Issue:3

    Topics: Aging; Animals; Cell Differentiation; Cell Movement; Chromatin; Enhancer of Zeste Homolog 2 Protein; Gene Knockout Techniques; Histone-Lysine N-Methyltransferase; Histones; Homologous Recombination; Integrases; Lysine; Methylation; Mice; Neurogenesis; Neurons; Organ Specificity; Recombinant Proteins; S Phase

2018
Targeting the Senescence-Overriding Cooperative Activity of Structurally Unrelated H3K9 Demethylases in Melanoma.
    Cancer cell, 2018, 02-12, Volume: 33, Issue:2

    Topics: Animals; Histone Demethylases; Histones; Humans; Jumonji Domain-Containing Histone Demethylases; Lysine; Melanoma; Methylation; Mice, Nude; Promoter Regions, Genetic

2018
Regulation of eukaryotic elongation factor 1 alpha (eEF1A) by dynamic lysine methylation.
    RNA biology, 2018, 03-04, Volume: 15, Issue:3

    Topics: Actin Cytoskeleton; Eukaryotic Initiation Factor-1; Histone-Lysine N-Methyltransferase; Humans; Lysine; Methylation; Models, Molecular; Protein Conformation; Protein Processing, Post-Translational; Virus Replication

2018
UV-B radiation delays flowering time through changes in the PRC2 complex activity and miR156 levels in Arabidopsis thaliana.
    Plant, cell & environment, 2018, Volume: 41, Issue:6

    Topics: Arabidopsis; Arabidopsis Proteins; Down-Regulation; Flowers; Gene Expression Regulation, Plant; Genes, Plant; Histones; Lysine; Methylation; MicroRNAs; Mutation; Polycomb Repressive Complex 2; Repressor Proteins; Time Factors; Ultraviolet Rays

2018
DZNep inhibits H3K27me3 deposition and delays retinal degeneration in the rd1 mice.
    Cell death & disease, 2018, 02-22, Volume: 9, Issue:3

    Topics: Adenosine; Amino Acid Motifs; Animals; Calpain; Disease Models, Animal; Epigenesis, Genetic; Female; Histones; Humans; Lysine; Male; Methylation; Mice; Mice, Inbred ICR; Phosphatidylinositol 3-Kinases; Proto-Oncogene Proteins c-akt; Retina; Retinal Degeneration

2018
Inhibition of the Histone H3K27 Demethylase UTX Enhances Tumor Cell Radiosensitivity.
    Molecular cancer therapeutics, 2018, Volume: 17, Issue:5

    Topics: A549 Cells; Benzazepines; Cell Line; Cell Line, Tumor; Cell Survival; DNA Breaks, Double-Stranded; DNA Repair; Histone Demethylases; Histones; Humans; Lysine; Methylation; Nuclear Proteins; Pyrimidines; Radiation Tolerance; RNA Interference

2018
Nap1l1 Controls Embryonic Neural Progenitor Cell Proliferation and Differentiation in the Developing Brain.
    Cell reports, 2018, 02-27, Volume: 22, Issue:9

    Topics: Animals; Brain; Cell Differentiation; Cell Proliferation; Cerebral Cortex; Female; Gene Deletion; Gene Expression Regulation, Developmental; Gene Silencing; Histone-Lysine N-Methyltransferase; Histones; Lysine; Methylation; Mice, Inbred ICR; Mice, Knockout; Mitosis; Neural Stem Cells; Neurogenesis; Nucleosome Assembly Protein 1; Promoter Regions, Genetic

2018
Erythropoietin Upregulates Brain Hemoglobin Expression and Supports Neuronal Mitochondrial Activity.
    Molecular neurobiology, 2018, Volume: 55, Issue:10

    Topics: Animals; Aspartic Acid; Brain; Cell Respiration; Cuprizone; Disease Models, Animal; Electron Transport Complex III; Erythropoietin; Hemoglobins; Histones; Lysine; Male; Methylation; Mice, Inbred C57BL; Mitochondria; Models, Biological; Multiple Sclerosis; Myelin Basic Protein; Myelin Sheath; Neurons; Up-Regulation

2018
SETD7 Drives Cardiac Lineage Commitment through Stage-Specific Transcriptional Activation.
    Cell stem cell, 2018, 03-01, Volume: 22, Issue:3

    Topics: Calcium Signaling; Cell Differentiation; Cell Line; Cell Lineage; Chromatin; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Mesoderm; Methylation; Myocardium; Myocytes, Cardiac; RNA Polymerase II; Transcription, Genetic; Transcriptional Activation

2018
Consequences of early life stress on genomic landscape of H3K4me3 in prefrontal cortex of adult mice.
    BMC genomics, 2018, 02-09, Volume: 19, Issue:Suppl 3

    Topics: Adaptation, Psychological; Animals; Behavior, Animal; Emotions; Female; Genomics; Histones; Lysine; Male; Maternal Deprivation; Methylation; Mice; Mice, Inbred C57BL; Prefrontal Cortex; Stress, Psychological

2018
Signaling function of PRC2 is essential for TCR-driven T cell responses.
    The Journal of experimental medicine, 2018, 04-02, Volume: 215, Issue:4

    Topics: Animals; Autoimmunity; Cell Proliferation; Cytoplasm; Enhancer of Zeste Homolog 2 Protein; Extracellular Signal-Regulated MAP Kinases; Gene Expression Regulation; Histones; Interleukin-2; Lymphocyte Subsets; Lysine; Methylation; Mice; Phosphorylation; Polycomb Repressive Complex 2; Receptors, Antigen, T-Cell; Receptors, Interleukin-2; Signal Transduction; T-Lymphocytes; Transcription, Genetic

2018
Combined Loss of JMJD1A and JMJD1B Reveals Critical Roles for H3K9 Demethylation in the Maintenance of Embryonic Stem Cells and Early Embryogenesis.
    Stem cell reports, 2018, 04-10, Volume: 10, Issue:4

    Topics: Animals; Cell Cycle Checkpoints; Cell Line; Cell Survival; Chromosomes, Mammalian; Demethylation; Down-Regulation; Embryonic Development; Gene Expression Regulation, Developmental; Histone-Lysine N-Methyltransferase; Histones; Jumonji Domain-Containing Histone Demethylases; Lysine; Methylation; Mice; Mouse Embryonic Stem Cells; Mutation

2018
Increased H3K9 methylation and impaired expression of Protocadherins are associated with the cognitive dysfunctions of the Kleefstra syndrome.
    Nucleic acids research, 2018, 06-01, Volume: 46, Issue:10

    Topics: Animals; Animals, Newborn; Cadherins; Chromosome Deletion; Chromosomes, Human, Pair 9; Cognitive Dysfunction; Craniofacial Abnormalities; Disease Models, Animal; Gene Expression Regulation; Heart Defects, Congenital; Hippocampus; Histone-Lysine N-Methyltransferase; Histones; Intellectual Disability; Lysine; Male; Methylation; Mice, Knockout

2018
H3K4 Methylation Dependent and Independent Chromatin Regulation by
    G3 (Bethesda, Md.), 2018, 05-04, Volume: 8, Issue:5

    Topics: Alleles; Chromatin; Gene Deletion; Gene Expression Regulation, Fungal; Histone-Lysine N-Methyltransferase; Histones; Jumonji Domain-Containing Histone Demethylases; Lysine; Methylation; Models, Genetic; Nucleosomes; Protein Subunits; Saccharomyces cerevisiae Proteins; Saccharomycetales; Suppression, Genetic; Temperature; Transcription Initiation Site

2018
Crosstalk between lysine methylation and phosphorylation of ATG16L1 dictates the apoptosis of hypoxia/reoxygenation-induced cardiomyocytes.
    Autophagy, 2018, Volume: 14, Issue:5

    Topics: Amino Acid Sequence; Animals; Apoptosis; Autophagy; Autophagy-Related Proteins; Carrier Proteins; Cell Hypoxia; HEK293 Cells; Histone Demethylases; Histone-Lysine N-Methyltransferase; Humans; Lysine; Methylation; Mice; Myocytes, Cardiac; Oxygen; Phosphorylation; Protein Binding; Protein Methyltransferases; Rats; Vesicular Transport Proteins

2018
Histone H3 lysine 36 methyltransferase mobilizes NER factors to regulate tolerance against alkylation damage in fission yeast.
    Nucleic acids research, 2018, 06-01, Volume: 46, Issue:10

    Topics: Alkylating Agents; Checkpoint Kinase 1; DNA Helicases; DNA Repair; DNA-Binding Proteins; Epistasis, Genetic; Gene Expression Regulation, Fungal; Histone-Lysine N-Methyltransferase; Lysine; Methyl Methanesulfonate; Methylation; Protein Domains; Schizosaccharomyces; Schizosaccharomyces pombe Proteins

2018
Potent antitumor efficacy of anti-GD2 CAR T cells in H3-K27M
    Nature medicine, 2018, Volume: 24, Issue:5

    Topics: Animals; Brain Neoplasms; Gangliosides; Glioma; Histones; Humans; Immunotherapy, Adoptive; Lysine; Methylation; Mice; Receptors, Antigen, T-Cell; Xenograft Model Antitumor Assays

2018
Integrative analysis reveals functional and regulatory roles of H3K79me2 in mediating alternative splicing.
    Genome medicine, 2018, 04-17, Volume: 10, Issue:1

    Topics: Alternative Splicing; Cell Line, Tumor; Cluster Analysis; Exons; Gene Expression Regulation, Neoplastic; Gene Ontology; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation; Methyltransferases; Neoplasms; Nucleotide Motifs; Reproducibility of Results; RNA Splice Sites

2018
Cucurbit[7]uril-Dimethyllysine Recognition in a Model Protein.
    Angewandte Chemie (International ed. in English), 2018, 06-11, Volume: 57, Issue:24

    Topics: Bridged-Ring Compounds; Crystallography, X-Ray; Imidazoles; Lysine; Methylation; Models, Molecular; Proteins; Water

2018
Distinct Stimulatory Mechanisms Regulate the Catalytic Activity of Polycomb Repressive Complex 2.
    Molecular cell, 2018, 05-03, Volume: 70, Issue:3

    Topics: Animals; Catalysis; Cell Line; Chromatin; DNA-Binding Proteins; Enhancer of Zeste Homolog 2 Protein; HEK293 Cells; Histones; Humans; Lysine; Methylation; Mice; Polycomb Repressive Complex 2

2018
Interactions of HP1 Bound to H3K9me3 Dinucleosome by Molecular Simulations and Biochemical Assays.
    Biophysical journal, 2018, 05-22, Volume: 114, Issue:10

    Topics: Amino Acid Sequence; Chromobox Protein Homolog 5; Chromosomal Proteins, Non-Histone; Histones; Lysine; Methylation; Molecular Dynamics Simulation; Nucleosomes; Protein Binding; Protein Conformation

2018
Histone H3.3 G34 Mutations Alter Histone H3K36 and H3K27 Methylation In Cis.
    Journal of molecular biology, 2018, 05-25, Volume: 430, Issue:11

    Topics: Bone Neoplasms; Brain Neoplasms; Child; Epigenesis, Genetic; Giant Cell Tumor of Bone; Glioblastoma; HeLa Cells; Histones; Humans; Lysine; Methylation; Mutation

2018
    Cancer research, 2018, 06-15, Volume: 78, Issue:12

    Topics: Animals; Carcinogenesis; Carcinoma, Renal Cell; Cell Line, Tumor; Chromosomes, Human, Pair 3; Fibroblasts; Gene Knockdown Techniques; Genomic Instability; Haploinsufficiency; Histone-Lysine N-Methyltransferase; Histones; Humans; Kidney Neoplasms; Kidney Tubules, Proximal; Lysine; Methylation; Mice; Micronuclei, Chromosome-Defective; Microtubules

2018
Depletion of Nsd2-mediated histone H3K36 methylation impairs adipose tissue development and function.
    Nature communications, 2018, 05-04, Volume: 9, Issue:1

    Topics: 3T3-L1 Cells; Adipocytes; Adipogenesis; Adipose Tissue, Brown; Adipose Tissue, White; Animals; Cell Line; Gene Expression Regulation; Histone-Lysine N-Methyltransferase; Histones; Lysine; Methylation; Mice; Mice, Inbred C57BL; Mice, Transgenic; Mutation; PPAR gamma

2018
Identification of methylated tubulin through analysis of methylated lysine.
    Analytical and bioanalytical chemistry, 2018, Volume: 410, Issue:17

    Topics: Chemistry Techniques, Analytical; Chromatography; Histones; Limit of Detection; Lysine; Methylation; Protein Processing, Post-Translational; Tubulin

2018
The Legionella pneumophila Methyltransferase RomA Methylates Also Non-histone Proteins during Infection.
    Journal of molecular biology, 2018, 06-22, Volume: 430, Issue:13

    Topics: Bacterial Proteins; Cloning, Molecular; HEK293 Cells; HeLa Cells; Histone-Lysine N-Methyltransferase; Humans; Legionella pneumophila; Legionnaires' Disease; Lysine; Methylation; Nuclear Proteins; Peptides; Protein Processing, Post-Translational; Substrate Specificity; Transcription Factors

2018
Design, Synthesis, and In Vitro Evaluation of Novel Histone H3 Peptide-Based LSD1 Inactivators Incorporating α,α-Disubstituted Amino Acids with γ-Turn-Inducing Structures.
    Molecules (Basel, Switzerland), 2018, 05-06, Volume: 23, Issue:5

    Topics: Amino Acids; Amino Acids, Cyclic; Catalytic Domain; Cyclohexanecarboxylic Acids; Drug Design; Enzyme Assays; Enzyme Inhibitors; Histone Demethylases; Histones; Humans; Hydrolysis; Isoenzymes; Lysine; Methylation; Molecular Docking Simulation; Monoamine Oxidase; Peptides; Protein Binding; Protein Interaction Domains and Motifs; Protein Structure, Secondary; Structure-Activity Relationship; Tranylcypromine

2018
JMJD3 inhibition protects against isoproterenol-induced cardiac hypertrophy by suppressing β-MHC expression.
    Molecular and cellular endocrinology, 2018, 12-05, Volume: 477

    Topics: Animals; Animals, Newborn; Benzazepines; Cardiomegaly; Demethylation; Gene Knockdown Techniques; Histones; Isoproterenol; Jumonji Domain-Containing Histone Demethylases; Lysine; Male; Methylation; Mice, Inbred C57BL; Myocytes, Cardiac; Myosin Heavy Chains; Promoter Regions, Genetic; Pyrimidines; Rats, Sprague-Dawley; Up-Regulation

2018
Methionine metabolism influences genomic architecture and gene expression through H3K4me3 peak width.
    Nature communications, 2018, 05-16, Volume: 9, Issue:1

    Topics: Animals; Gene Expression Profiling; Genomics; HCT116 Cells; Histone Code; Histones; Humans; Liver; Lysine; Male; Methionine; Methylation; Mice, Inbred C57BL; Neoplasms

2018
Enhancer of zeste homolog 2-catalysed H3K27 trimethylation plays a key role in acute-on-chronic liver failure via TNF-mediated pathway.
    Cell death & disease, 2018, 05-22, Volume: 9, Issue:6

    Topics: Acute-On-Chronic Liver Failure; Animals; Biocatalysis; Chromatin; Cytokines; Disease Models, Animal; Enhancer of Zeste Homolog 2 Protein; Female; Histones; Humans; Indoles; Inflammation Mediators; Kupffer Cells; Lipopolysaccharides; Liver; Lysine; Methylation; Mice, Inbred C57BL; NF-kappa B; Promoter Regions, Genetic; Proto-Oncogene Proteins c-akt; Pyridones; Signal Transduction; Tumor Necrosis Factor-alpha

2018
The Memory of Environmental Chemical Exposure in C. elegans Is Dependent on the Jumonji Demethylases jmjd-2 and jmjd-3/utx-1.
    Cell reports, 2018, 05-22, Volume: 23, Issue:8

    Topics: Animals; Benzhydryl Compounds; Caenorhabditis elegans; Caenorhabditis elegans Proteins; Embryo, Nonmammalian; Environment; Fertility; Germ Cells; Histone Code; Histone Demethylases; Histones; Inheritance Patterns; Lysine; Memory; Methylation; Phenols; Transcriptome; Transgenes; Up-Regulation

2018
H3K27me1 is essential for MMP-9-dependent H3N-terminal tail proteolysis during osteoclastogenesis.
    Epigenetics & chromatin, 2018, 05-28, Volume: 11, Issue:1

    Topics: Chromatin; Epigenesis, Genetic; HEK293 Cells; Histocompatibility Antigens; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Matrix Metalloproteinase 9; Methylation; Osteoclasts; Osteogenesis; Proteolysis; RANK Ligand

2018
Methylation of hypoxia-inducible factor (HIF)-1α by G9a/GLP inhibits HIF-1 transcriptional activity and cell migration.
    Nucleic acids research, 2018, 07-27, Volume: 46, Issue:13

    Topics: Autoantigens; Cell Hypoxia; Cell Line; Cell Movement; Epigenesis, Genetic; Gene Expression Regulation, Neoplastic; Glioblastoma; Golgi Matrix Proteins; Histocompatibility Antigens; Histone-Lysine N-Methyltransferase; Humans; Hypoxia-Inducible Factor 1, alpha Subunit; Lysine; Methylation; Response Elements; Transcription, Genetic

2018
Cell Lysate Microarray for Mapping the Network of Genetic Regulators for Histone Marks.
    Molecular & cellular proteomics : MCP, 2018, Volume: 17, Issue:9

    Topics: Acyl Coenzyme A; Acylation; Click Chemistry; Gene Regulatory Networks; Histone Code; Histones; Lysine; Methylation; Models, Biological; Mutation; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins; Stress, Physiological

2018
Unique patterns of trimethylation of histone H3 lysine 4 are prone to changes during aging in Caenorhabditis elegans somatic cells.
    PLoS genetics, 2018, Volume: 14, Issue:6

    Topics: Age Factors; Animals; Caenorhabditis elegans; DNA Methylation; Epigenesis, Genetic; Gene Expression Regulation; Histones; Lysine; Methylation; Transcriptional Activation

2018
Distinct functions of polycomb group proteins in regulating Ci transcription in developing Drosophila.
    Journal of molecular cell biology, 2018, 10-01, Volume: 10, Issue:5

    Topics: Animals; Animals, Genetically Modified; DNA-Binding Proteins; Drosophila melanogaster; Drosophila Proteins; Epigenesis, Genetic; Gene Expression Regulation, Developmental; Homeodomain Proteins; Lysine; Methylation; Mutation; Nuclear Proteins; Polycomb Repressive Complex 1; Polycomb Repressive Complex 2; Protein Domains; Transcription Factors; Transcription, Genetic

2018
Epigenetic inheritance mediated by coupling of RNAi and histone H3K9 methylation.
    Nature, 2018, Volume: 558, Issue:7711

    Topics: Alleles; Cell Cycle Proteins; Epigenomics; Feedback, Physiological; Genes, Fungal; Heterochromatin; Histone-Lysine N-Methyltransferase; Histones; Lysine; Methylation; Methyltransferases; Nuclear Proteins; RNA Interference; Schizosaccharomyces; Schizosaccharomyces pombe Proteins

2018
The Ubx Polycomb response element bypasses an unpaired Fab-8 insulator via cis transvection in Drosophila.
    PloS one, 2018, Volume: 13, Issue:6

    Topics: Animals; Animals, Genetically Modified; CCCTC-Binding Factor; Chromatin; Chromosomes, Insect; Drosophila melanogaster; Drosophila Proteins; Embryo, Nonmammalian; Genes, Reporter; Heterozygote; Histones; Homeodomain Proteins; Homozygote; Insulator Elements; Lysine; Methylation; Models, Biological; Phenotype; Promoter Regions, Genetic; Response Elements; RNA Polymerase II; Transcription Factors; Transgenes

2018
An outlook on lysine methylation of non-histone proteins in plants.
    Journal of experimental botany, 2018, 08-31, Volume: 69, Issue:19

    Topics: Chromosomal Proteins, Non-Histone; Lysine; Methylation; Plant Proteins

2018
Capturing the Onset of PRC2-Mediated Repressive Domain Formation.
    Molecular cell, 2018, 06-21, Volume: 70, Issue:6

    Topics: Animals; Chromatin; Gene Silencing; Histone Code; Histones; Lysine; Methylation; Mice; Mice, Inbred C57BL; Mouse Embryonic Stem Cells; Polycomb Repressive Complex 2; Polycomb-Group Proteins; Protein Binding; Protein Processing, Post-Translational

2018
Postnatal changes in epigenetic modifications of neutrophils of foals are associated with increased ROS function and regulation of neutrophil function.
    Developmental and comparative immunology, 2018, Volume: 87

    Topics: Animals; Animals, Newborn; Cytokines; Epigenesis, Genetic; Histones; Horse Diseases; Horses; Immunity, Innate; Lysine; Methylation; Neutrophils; Promoter Regions, Genetic; Reactive Oxygen Species; Signal Transduction

2018
Regulation of Breast Cancer-Induced Osteoclastogenesis by MacroH2A1.2 Involving EZH2-Mediated H3K27me3.
    Cell reports, 2018, 07-03, Volume: 24, Issue:1

    Topics: Animals; Bone Resorption; Breast Neoplasms; Cell Differentiation; Cell Line, Tumor; Enhancer of Zeste Homolog 2 Protein; Female; Gene Expression Regulation, Neoplastic; Histones; Humans; Lysine; Methylation; Mice, Inbred C57BL; Nucleosomes; Osteoclasts; Osteogenesis; Phosphorylation; Protein Binding; Protein-Lysine 6-Oxidase; Proto-Oncogene Proteins pp60(c-src)

2018
Molecular basis for the inhibition of the methyl-lysine binding function of 53BP1 by TIRR.
    Nature communications, 2018, 07-12, Volume: 9, Issue:1

    Topics: Binding, Competitive; Carrier Proteins; Crystallography, X-Ray; DNA; DNA Breaks, Double-Stranded; DNA Damage; DNA Repair; HEK293 Cells; Histones; Humans; Lysine; Methylation; Mutation; Protein Binding; RNA-Binding Proteins; Tumor Suppressor p53-Binding Protein 1

2018
SET1A-Mediated Mono-Methylation at K342 Regulates YAP Activation by Blocking Its Nuclear Export and Promotes Tumorigenesis.
    Cancer cell, 2018, 07-09, Volume: 34, Issue:1

    Topics: A549 Cells; Active Transport, Cell Nucleus; Adaptor Proteins, Signal Transducing; Animals; Cell Cycle Proteins; Cell Nucleus; Cell Proliferation; Cell Transformation, Neoplastic; Colorectal Neoplasms; HEK293 Cells; HeLa Cells; Histone-Lysine N-Methyltransferase; Humans; Lung Neoplasms; Lysine; Methylation; Mice, Inbred C57BL; Mice, Knockout; Phosphoproteins; Prognosis; Protein Binding; Protein Interaction Domains and Motifs; Protein Processing, Post-Translational; Signal Transduction; Transcription Factors; Tumor Burden; YAP-Signaling Proteins

2018
RNA Sequencing and Pathway Analysis Identify Important Pathways Involved in Hypertrichosis and Intellectual Disability in Patients with Wiedemann-Steiner Syndrome.
    Neuromolecular medicine, 2018, Volume: 20, Issue:3

    Topics: Adolescent; Adult; Child; Female; Fibroblasts; Gene Expression Regulation; Histone-Lysine N-Methyltransferase; Histones; Humans; Hypertrichosis; Intellectual Disability; Loss of Function Mutation; Lysine; Male; Methylation; Middle Aged; Myeloid-Lymphoid Leukemia Protein; Nitric Oxide Synthase Type III; Rare Diseases; Sequence Analysis, RNA; Signal Transduction; Syndrome; Transcription, Genetic; Young Adult

2018
iAcet-Sumo: Identification of lysine acetylation and sumoylation sites in proteins by multi-class transformation methods.
    Computers in biology and medicine, 2018, 09-01, Volume: 100

    Topics: Acetylation; Databases, Protein; Lysine; Methylation; Sequence Analysis, Protein; Software; Sumoylation; Ubiquitinated Proteins

2018
TSPYL2 Regulates the Expression of EZH2 Target Genes in Neurons.
    Molecular neurobiology, 2019, Volume: 56, Issue:4

    Topics: Animals; Cell Cycle Proteins; Enhancer of Zeste Homolog 2 Protein; Gene Expression Regulation; Gene Ontology; HEK293 Cells; Histones; Humans; Lysine; Male; Methylation; Mice; Models, Genetic; Neurons; Nuclear Proteins; Promoter Regions, Genetic; Protein Binding; Transcription, Genetic

2019
Histone demethylase KDM2B promotes triple negative breast cancer proliferation by suppressing p15INK4B, p16INK4A, and p57KIP2 transcription.
    Acta biochimica et biophysica Sinica, 2018, Sep-01, Volume: 50, Issue:9

    Topics: Cell Line, Tumor; Cell Proliferation; Cyclin-Dependent Kinase Inhibitor p15; Cyclin-Dependent Kinase Inhibitor p16; Cyclin-Dependent Kinase Inhibitor p57; F-Box Proteins; Gene Expression Regulation, Neoplastic; Histones; Humans; Jumonji Domain-Containing Histone Demethylases; Lysine; Methylation; Promoter Regions, Genetic; Protein Binding; RNA Interference; Triple Negative Breast Neoplasms

2018
Inhibitor of CBP Histone Acetyltransferase Downregulates p53 Activation and Facilitates Methylation at Lysine 27 on Histone H3.
    Molecules (Basel, Switzerland), 2018, Aug-02, Volume: 23, Issue:8

    Topics: Acetylation; Animals; Apoptosis; Cell Line, Tumor; Cell Proliferation; Chromatin; CREB-Binding Protein; Curcumin; DNA Damage; Down-Regulation; Drug Evaluation, Preclinical; Enterocytes; Enzyme Inhibitors; Histones; Humans; Inhibitory Concentration 50; Lysine; Methylation; Protein Domains; Rats; Structure-Activity Relationship; Tumor Suppressor Protein p53

2018
Canonical PRC2 function is essential for mammary gland development and affects chromatin compaction in mammary organoids.
    PLoS biology, 2018, Volume: 16, Issue:8

    Topics: Animals; Chromatin; Enhancer of Zeste Homolog 2 Protein; Female; Heterochromatin; Histone Code; Histones; Lysine; Mammary Glands, Animal; Methylation; Mice; Polycomb Repressive Complex 2; Polycomb-Group Proteins; Primary Cell Culture; Protein Processing, Post-Translational

2018
Prognostic value of histone marks H3K27me3 and H3K9me3 and modifying enzymes EZH2, SETDB1 and LSD-1 in colorectal cancer.
    Journal of cancer research and clinical oncology, 2018, Volume: 144, Issue:11

    Topics: Aged; Biomarkers, Tumor; Colorectal Neoplasms; Enhancer of Zeste Homolog 2 Protein; Female; Histone Demethylases; Histone-Lysine N-Methyltransferase; Histones; Humans; Immunohistochemistry; Kaplan-Meier Estimate; Lysine; Male; Methylation; Middle Aged; Prognosis; Protein Methyltransferases; Retrospective Studies

2018
The tumor suppressor menin prevents effector CD8 T-cell dysfunction by targeting mTORC1-dependent metabolic activation.
    Nature communications, 2018, 08-17, Volume: 9, Issue:1

    Topics: Activation, Metabolic; Animals; Carbon; CD8-Positive T-Lymphocytes; Cell Proliferation; Female; Glutamine; Histones; Ketoglutaric Acids; Lymphocyte Activation; Lysine; Mechanistic Target of Rapamycin Complex 1; Metabolomics; Methylation; Mice, Inbred C57BL; Mice, Knockout; Proto-Oncogene Proteins; Sirolimus

2018
Mechanistic insights into plant SUVH family H3K9 methyltransferases and their binding to context-biased non-CG DNA methylation.
    Proceedings of the National Academy of Sciences of the United States of America, 2018, 09-11, Volume: 115, Issue:37

    Topics: Arabidopsis; Arabidopsis Proteins; Base Sequence; Crystallography, X-Ray; DNA; DNA Methylation; Histone-Lysine N-Methyltransferase; Histones; Lysine; Methylation; Models, Molecular; Nucleic Acid Conformation; Plants, Genetically Modified; Protein Binding; Protein Conformation

2018
Interactive and noninteractive roles of histone H2B monoubiquitination and H3K36 methylation in the regulation of active gene transcription and control of plant growth and development.
    The New phytologist, 2019, Volume: 221, Issue:2

    Topics: Arabidopsis; Arabidopsis Proteins; Chromatin; Flowers; Gene Expression Profiling; Gene Expression Regulation, Developmental; Gene Expression Regulation, Plant; Histone Code; Histones; Lysine; Methylation; Mutation; Nucleotide Motifs; Transcription, Genetic; Ubiquitination

2019
Short-Term Mitochondrial Permeability Transition Pore Opening Modulates Histone Lysine Methylation at the Early Phase of Somatic Cell Reprogramming.
    Cell metabolism, 2018, 12-04, Volume: 28, Issue:6

    Topics: Animals; Cellular Reprogramming; Fibroblasts; HEK293 Cells; Histone Demethylases; Histones; Humans; Ketoglutaric Acids; Lysine; Methylation; Mice; Mice, Inbred C57BL; MicroRNAs; Mitochondria; Mitochondrial Membrane Transport Proteins; Mitochondrial Membranes; Mitochondrial Permeability Transition Pore; Mouse Embryonic Stem Cells; Reactive Oxygen Species; Transcription Factors

2018
Multiple Histone Methyl-Lysine Readers Ensure Robust Development and Germline Immortality in
    Genetics, 2018, Volume: 210, Issue:3

    Topics: Amino Acid Sequence; Animals; Caenorhabditis elegans; Caenorhabditis elegans Proteins; Fertility; Heterochromatin; Histones; Longevity; Lysine; Male; Methylation; Protein Domains; Spermatozoa; Temperature

2018
Oligomerization and Auto-methylation of the Human Lysine Methyltransferase SETD6.
    Journal of molecular biology, 2018, 10-19, Volume: 430, Issue:21

    Topics: Gene Expression Regulation, Enzymologic; HEK293 Cells; Humans; Lysine; Methylation; Models, Molecular; Molecular Weight; Oxidative Stress; Point Mutation; Protein Conformation; Protein Methyltransferases; Protein Multimerization; S-Adenosylmethionine

2018
Epigenetic markers in basal cell carcinoma: universal themes in oncogenesis and tumor stratification? - a short report.
    Cellular oncology (Dordrecht), 2018, Volume: 41, Issue:6

    Topics: 5-Methylcytosine; Carcinogenesis; Carcinoma, Basal Cell; Epigenesis, Genetic; Histones; Humans; Lysine; Methylation; Skin Neoplasms

2018
Distinct Roles of Two Histone Methyltransferases in Transmitting H3K36me3-Based Epigenetic Memory Across Generations in
    Genetics, 2018, Volume: 210, Issue:3

    Topics: Animals; Biocatalysis; Caenorhabditis elegans; Caenorhabditis elegans Proteins; Embryonic Development; Epigenesis, Genetic; Female; Histones; Lysine; Male; Methylation; Oocytes; Spermatozoa; Temperature; X Chromosome

2018
Lysines 207 and 325 methylation of WDR5 catalyzed by SETD6 promotes breast cancer cell proliferation and migration.
    Oncology reports, 2018, Volume: 40, Issue:5

    Topics: Breast Neoplasms; Cell Movement; Cell Proliferation; Female; Histone-Lysine N-Methyltransferase; Humans; Intracellular Signaling Peptides and Proteins; Lysine; MCF-7 Cells; Methylation; Myeloid-Lymphoid Leukemia Protein; Protein Methyltransferases

2018
LNMAT1 promotes lymphatic metastasis of bladder cancer via CCL2 dependent macrophage recruitment.
    Nature communications, 2018, 09-20, Volume: 9, Issue:1

    Topics: Animals; Base Sequence; Cell Line, Tumor; Chemokine CCL2; DNA, Neoplasm; Gene Expression Regulation, Neoplastic; Histones; Humans; Lymphangiogenesis; Lymphatic Metastasis; Lysine; Macrophages; Methylation; Mice; Neoplasm Invasiveness; Prognosis; Promoter Regions, Genetic; Ribonucleoproteins; RNA, Long Noncoding; RNA, Neoplasm; Up-Regulation; Urinary Bladder Neoplasms

2018
Disruption of OCT4 Ubiquitination Increases OCT4 Protein Stability and ASH2L-B-Mediated H3K4 Methylation Promoting Pluripotency Acquisition.
    Stem cell reports, 2018, 10-09, Volume: 11, Issue:4

    Topics: Amino Acid Sequence; Animals; Cellular Reprogramming; DNA-Binding Proteins; Embryo, Mammalian; Embryonic Stem Cells; Fibroblasts; Histones; Induced Pluripotent Stem Cells; Kruppel-Like Factor 4; Kruppel-Like Transcription Factors; Lysine; Methylation; Mice; Mutation; Nuclear Proteins; Octamer Transcription Factor-3; Protein Binding; Protein Stability; Transcription Factors; Ubiquitin; Ubiquitin-Protein Ligases; Ubiquitination

2018
The H3K9 methyltransferase SETDB1 maintains female identity in Drosophila germ cells.
    Nature communications, 2018, 10-08, Volume: 9, Issue:1

    Topics: Animals; Animals, Genetically Modified; Drosophila melanogaster; Drosophila Proteins; Female; Gametogenesis; Gene Expression Regulation, Developmental; Gene Silencing; Germ Cells; Histone-Lysine N-Methyltransferase; Histones; Homeodomain Proteins; Lysine; Male; Methylation; RNA-Binding Proteins

2018
Differential Methylation of H3K79 Reveals DOT1L Target Genes and Function in the Cerebellum In Vivo.
    Molecular neurobiology, 2019, Volume: 56, Issue:6

    Topics: Animals; Axon Guidance; Cell Cycle; Cell Differentiation; Cell Movement; Cell Proliferation; Cell Survival; Cerebellum; Cholesterol; Gene Expression Regulation; Histone-Lysine N-Methyltransferase; Histones; Lysine; Methylation; Methyltransferases; Mice, Inbred C57BL; Mice, Knockout; Neural Stem Cells; Neurons; Stress, Physiological; Transcriptome

2019
Divergent wiring of repressive and active chromatin interactions between mouse embryonic and trophoblast lineages.
    Nature communications, 2018, 10-10, Volume: 9, Issue:1

    Topics: Animals; Cell Lineage; Chromatin; DNA-Binding Proteins; Embryo, Mammalian; Enhancer Elements, Genetic; Gene Expression Regulation, Developmental; Genome; Histones; Lysine; Methylation; Mice; Mice, Inbred ICR; Mouse Embryonic Stem Cells; Polycomb Repressive Complex 1; Proto-Oncogene Proteins; Trophoblasts

2018
MiR-34 inhibits polycomb repressive complex 2 to modulate chaperone expression and promote healthy brain aging.
    Nature communications, 2018, 10-10, Volume: 9, Issue:1

    Topics: 3' Untranslated Regions; Aging; Animals; Base Sequence; Brain; Drosophila melanogaster; Drosophila Proteins; Gene Expression Profiling; Histones; Lysine; Methylation; MicroRNAs; Models, Biological; Molecular Chaperones; Mutation; Nerve Degeneration; Peptides; Polycomb Repressive Complex 2; Protein Aggregates; Transcriptome

2018
Loss of histone methyltransferase Ezh2 stimulates an osteogenic transcriptional program in chondrocytes but does not affect cartilage development.
    The Journal of biological chemistry, 2018, 12-07, Volume: 293, Issue:49

    Topics: Animals; Cartilage; Cell Differentiation; Chondrocytes; Chondrogenesis; Enhancer of Zeste Homolog 2 Protein; Gene Knockdown Techniques; Histones; Lysine; Methylation; Mice; Osteogenesis; Transcriptome

2018
PWWP2A binds distinct chromatin moieties and interacts with an MTA1-specific core NuRD complex.
    Nature communications, 2018, 10-16, Volume: 9, Issue:1

    Topics: Acetylation; Animals; Chromatin; Chromosomal Proteins, Non-Histone; HEK293 Cells; Histone Deacetylases; Histones; Humans; Lysine; Methylation; Mi-2 Nucleosome Remodeling and Deacetylase Complex; Mice; Nucleosomes; Repressor Proteins; RNA, Small Interfering; Trans-Activators

2018
Methylation Patterns of Lys9 and Lys27 on Histone H3 Correlate with Patient Outcome in Gastric Cancer.
    Digestive diseases and sciences, 2019, Volume: 64, Issue:2

    Topics: Adult; Aged; Carcinoma; Epigenesis, Genetic; Female; Histone Code; Histones; Humans; Immunohistochemistry; Kaplan-Meier Estimate; Lysine; Male; Methylation; Middle Aged; Neoplasm Staging; Prognosis; Stomach Neoplasms

2019
KMT2B Is Selectively Required for Neuronal Transdifferentiation, and Its Loss Exposes Dystonia Candidate Genes.
    Cell reports, 2018, 10-23, Volume: 25, Issue:4

    Topics: Animals; Cell Differentiation; Cell Transdifferentiation; Dystonia; Embryo, Mammalian; Epigenesis, Genetic; Fibroblasts; Genetic Association Studies; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation; Mice, Knockout; Myeloid-Lymphoid Leukemia Protein; Neurons; Transcriptome

2018
Spindlin-1 recognizes methylations of K20 and R23 of histone H4 tail.
    FEBS letters, 2018, Volume: 592, Issue:24

    Topics: Arginine; Cell Cycle Proteins; Crystallography, X-Ray; HeLa Cells; Histones; Humans; Lysine; Methylation; Microtubule-Associated Proteins; Models, Molecular; Mutation; Phosphoproteins; Protein Binding; Protein Domains

2018
KDM6A and KDM6B play contrasting roles in nuclear transfer embryos revealed by MERVL reporter system.
    EMBO reports, 2018, Volume: 19, Issue:12

    Topics: Animals; Blastocyst; Cellular Reprogramming; Embryo, Mammalian; Embryonic Development; Endogenous Retroviruses; Female; Fertilization; Gene Knockdown Techniques; Genes, Reporter; Histone Demethylases; Histones; Jumonji Domain-Containing Histone Demethylases; Lysine; Methylation; Mice, Inbred C57BL; Nuclear Transfer Techniques; RNA, Long Noncoding; Transcriptome; Zygote

2018
    Development (Cambridge, England), 2018, 11-27, Volume: 145, Issue:23

    Topics: Animals; Chromatin; Drosophila melanogaster; Drosophila Proteins; Embryo, Nonmammalian; Enhancer Elements, Genetic; Gene Expression Regulation, Developmental; Histones; Lysine; Methylation; Models, Biological; Polycomb-Group Proteins; Protein Binding

2018
DNMTs and SETDB1 function as co-repressors in MAX-mediated repression of germ cell-related genes in mouse embryonic stem cells.
    PloS one, 2018, Volume: 13, Issue:11

    Topics: Animals; Basic Helix-Loop-Helix Leucine Zipper Transcription Factors; Biomarkers; Chemical Fractionation; Co-Repressor Proteins; DNA (Cytosine-5-)-Methyltransferases; DNA Methylation; Gene Expression Regulation; Germ Cells; Histone-Lysine N-Methyltransferase; Histones; Lysine; Methylation; Mice; Mice, Knockout; Mouse Embryonic Stem Cells; Multiprotein Complexes; Polycomb Repressive Complex 1; Protein Binding

2018
Deciphering and engineering chromodomain-methyllysine peptide recognition.
    Science advances, 2018, Volume: 4, Issue:11

    Topics: Chromatin; Chromobox Protein Homolog 5; Chromosomal Proteins, Non-Histone; HeLa Cells; Histones; Humans; Lysine; Methylation; Models, Molecular; Mutation; Peptide Fragments; Protein Array Analysis; Protein Binding; Protein Engineering; Protein Interaction Domains and Motifs; Protein Processing, Post-Translational

2018
Arginine methylation of SIRT7 couples glucose sensing with mitochondria biogenesis.
    EMBO reports, 2018, Volume: 19, Issue:12

    Topics: Adenylate Kinase; Amino Acid Sequence; Arginine; Glucose; HEK293 Cells; Histones; Humans; Lysine; Methylation; Nuclear Proteins; Organelle Biogenesis; Protein-Arginine N-Methyltransferases; Sirtuins

2018
The chromatin remodeler ZmCHB101 impacts alternative splicing contexts in response to osmotic stress.
    Plant cell reports, 2019, Volume: 38, Issue:2

    Topics: Adaptation, Physiological; Alternative Splicing; Arabidopsis; Chromatin Assembly and Disassembly; Exons; Gene Expression Regulation, Plant; Histones; Lysine; Methylation; Nucleosomes; Osmotic Pressure; Plant Proteins; Plants, Genetically Modified; RNA Polymerase II; Stress, Physiological; Transcription, Genetic; Zea mays

2019
Chromatin Modifiers SET-25 and SET-32 Are Required for Establishment but Not Long-Term Maintenance of Transgenerational Epigenetic Inheritance.
    Cell reports, 2018, 11-20, Volume: 25, Issue:8

    Topics: Animals; Caenorhabditis elegans; Caenorhabditis elegans Proteins; Chromatin; Epigenesis, Genetic; Gene Silencing; Germ Cells; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Histones; Inheritance Patterns; Longevity; Lysine; Male; Methylation; Models, Genetic; Mutation; Phenotype; RNA; RNA, Small Interfering; Spermatozoa

2018
ASH1-catalyzed H3K36 methylation drives gene repression and marks H3K27me2/3-competent chromatin.
    eLife, 2018, 11-23, Volume: 7

    Topics: Chromatin; Epigenetic Repression; Histone-Lysine N-Methyltransferase; Histones; Lysine; Methylation; Neurospora crassa; Protein Processing, Post-Translational

2018
A functional proteomics platform to reveal the sequence determinants of lysine methyltransferase substrate selectivity.
    Science advances, 2018, Volume: 4, Issue:11

    Topics: Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation; Mutation, Missense; Proteome; Substrate Specificity

2018
MacroH2A1 chromatin specification requires its docking domain and acetylation of H2B lysine 20.
    Nature communications, 2018, 12-03, Volume: 9, Issue:1

    Topics: Acetylation; Amino Acid Sequence; Binding Sites; Cell Line; Chromatin; Gene Expression Regulation; HEK293 Cells; Histones; Humans; Immunoblotting; Lysine; Methylation; Protein Binding; Sequence Homology, Amino Acid

2018
Diabetes induces tri-methylation at lysine 9 of histone 3 at Slc2a4 gene in skeletal muscle: A new target to improve glycemic control.
    Molecular and cellular endocrinology, 2019, 02-05, Volume: 481

    Topics: Animals; Diabetes Mellitus, Type 1; Diabetes Mellitus, Type 2; Disease Models, Animal; Epigenesis, Genetic; Glucose Transporter Type 4; Histones; Humans; Insulin; Lysine; Male; Methylation; Mice; Muscle, Skeletal; Promoter Regions, Genetic; Rats; Resveratrol

2019
Lysine methylation by the mitochondrial methyltransferase FAM173B optimizes the function of mitochondrial ATP synthase.
    The Journal of biological chemistry, 2019, 01-25, Volume: 294, Issue:4

    Topics: Animals; Cell Line; Computational Biology; HeLa Cells; Histone-Lysine N-Methyltransferase; Humans; Lysine; Methylation; Mice; Mitochondria; Mitochondrial Proton-Translocating ATPases

2019
A chromatin integration labelling method enables epigenomic profiling with lower input.
    Nature cell biology, 2019, Volume: 21, Issue:2

    Topics: Animals; Cell Line; Cell Line, Tumor; Chromatin; DNA Probes; Epigenomics; Gene Expression Profiling; Histones; Humans; Lysine; MCF-7 Cells; Methylation; Mice; Myoblasts; Reproducibility of Results; Sequence Analysis, DNA; Single-Cell Analysis

2019
Cation-π Interactions between Methylated Ammonium Groups and Tryptophan in the CHARMM36 Additive Force Field.
    Journal of chemical theory and computation, 2019, Jan-08, Volume: 15, Issue:1

    Topics: Ammonium Compounds; Cations; Choline; Dimerization; Lysine; Methylation; Proteins; Quantum Theory; Solvents; Thermodynamics; Tryptophan

2019
A nuclear lamina-chromatin-Ran GTPase axis modulates nuclear import and DNA damage signaling.
    Aging cell, 2019, Volume: 18, Issue:1

    Topics: Active Transport, Cell Nucleus; Azepines; Chromatin; DNA Damage; Fibroblasts; Histones; Humans; Interphase; Lamin Type A; Lysine; Methylation; Nuclear Lamina; Progeria; Quinazolines; ran GTP-Binding Protein; Signal Transduction

2019
Epigenetic impairments in development of parthenogenetic preimplantation mouse embryos.
    The Journal of reproduction and development, 2019, Feb-08, Volume: 65, Issue:1

    Topics: Acetylation; Animals; Arginine; Blastocyst; Chromatin; Chromatin Assembly and Disassembly; Chromobox Protein Homolog 5; Chromosomal Proteins, Non-Histone; Embryonic Development; Epigenesis, Genetic; Female; Gene Expression Regulation, Developmental; Histones; Lysine; Male; Methylation; Mice; Mice, Inbred ICR; Parthenogenesis; Sperm Injections, Intracytoplasmic

2019
Identification of selective and reversible LSD1 inhibitors with anti-metastasis activity by high-throughput docking.
    Bioorganic & medicinal chemistry letters, 2019, 02-15, Volume: 29, Issue:4

    Topics: Cell Line, Tumor; Demethylation; Enzyme Inhibitors; Histone Demethylases; Histones; Humans; Lysine; Methylation; Molecular Docking Simulation; Neoplasm Metastasis; Neoplasms; Structure-Activity Relationship

2019
METTL13 Methylation of eEF1A Increases Translational Output to Promote Tumorigenesis.
    Cell, 2019, 01-24, Volume: 176, Issue:3

    Topics: Adult; Aged; Animals; Carcinogenesis; Cell Line; Cell Transformation, Neoplastic; Female; HEK293 Cells; Heterografts; Humans; Lysine; Male; Methylation; Methyltransferases; Mice; Mice, Inbred C57BL; Mice, Knockout; Mice, Transgenic; Pancreatic Neoplasms; Peptide Elongation Factor 1; Protein Biosynthesis; Protein Processing, Post-Translational; Proteomics; Signal Transduction

2019
A Modular Ligation Strategy for Asymmetric Bivalent Nucleosomes Trimethylated at K36 and K27.
    Chembiochem : a European journal of chemical biology, 2019, 05-02, Volume: 20, Issue:9

    Topics: Disulfides; Histones; Humans; Lysine; Methylation; Nucleosomes; Polycomb Repressive Complex 2; Protein Binding

2019
The methyltransferase SETD6 regulates Mitotic progression through PLK1 methylation.
    Proceedings of the National Academy of Sciences of the United States of America, 2019, 01-22, Volume: 116, Issue:4

    Topics: Cell Cycle; Cell Cycle Proteins; Cell Line, Tumor; Cell Proliferation; Cytokinesis; HeLa Cells; Humans; Lysine; Methylation; Mitosis; Polo-Like Kinase 1; Protein Methyltransferases; Protein Serine-Threonine Kinases; Proteomics; Proto-Oncogene Proteins; Signal Transduction

2019
Epigenetically modulated FOXM1 suppresses dendritic cell maturation in pancreatic cancer and colon cancer.
    Molecular oncology, 2019, Volume: 13, Issue:4

    Topics: Adenocarcinoma; Adenosine; Animals; Bone Marrow Cells; Cell Differentiation; Cell Line, Tumor; Cell Proliferation; Colonic Neoplasms; Culture Media, Conditioned; Dendritic Cells; Epigenesis, Genetic; Forkhead Box Protein M1; Gene Expression Regulation, Neoplastic; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Male; Methylation; Mice, Inbred BALB C; Mice, Inbred C57BL; Models, Biological; Pancreatic Neoplasms; Phenylurea Compounds; Signal Transduction; Thiostrepton; Wnt-5a Protein

2019
Inhibition of EHMT1/2 rescues synaptic and cognitive functions for Alzheimer's disease.
    Brain : a journal of neurology, 2019, 03-01, Volume: 142, Issue:3

    Topics: Alzheimer Disease; Animals; Chromosome Deletion; Cognition; Cognition Disorders; Cognitive Dysfunction; Disease Models, Animal; DNA Methylation; Epigenesis, Genetic; Hippocampus; Histocompatibility Antigens; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Memory Disorders; Methylation; Mice; Mice, Transgenic; Prefrontal Cortex; Synapses

2019
TRIM28 down-regulation on methylation imprints in bovine preimplantation embryos.
    Zygote (Cambridge, England), 2018, Volume: 26, Issue:6

    Topics: Animals; Blastocyst; Cattle; Down-Regulation; Female; Fertilization in Vitro; Gene Expression Regulation, Developmental; Gene Knockdown Techniques; In Vitro Oocyte Maturation Techniques; Lysine; Male; Methylation; Nuclear Transfer Techniques; Oocytes; RNA, Small Interfering; Tripartite Motif-Containing Protein 28

2018
SETDB1-mediated methylation of Akt promotes its K63-linked ubiquitination and activation leading to tumorigenesis.
    Nature cell biology, 2019, Volume: 21, Issue:2

    Topics: A549 Cells; Animals; Carcinogenesis; Carcinoma, Non-Small-Cell Lung; Female; HEK293 Cells; Histone-Lysine N-Methyltransferase; Humans; Lung Neoplasms; Lysine; Methylation; Mice; Mice, Inbred BALB C; Mice, Knockout; Mice, Nude; NIH 3T3 Cells; Protein Methyltransferases; Proto-Oncogene Proteins c-akt; Transplantation, Heterologous; Ubiquitination

2019
Lysine 27 of replication-independent histone H3.3 is required for Polycomb target gene silencing but not for gene activation.
    PLoS genetics, 2019, Volume: 15, Issue:1

    Topics: Alleles; Animals; Chromatin; CRISPR-Cas Systems; DNA Replication; DNA-Binding Proteins; Drosophila melanogaster; Epigenesis, Genetic; Gene Silencing; Histone Code; Histones; Humans; Lysine; Methylation; Polycomb-Group Proteins; Transcriptional Activation

2019
G9a-dependent histone methylation can be induced in G1 phase of cell cycle.
    Scientific reports, 2019, 01-30, Volume: 9, Issue:1

    Topics: Animals; Cell Line; Female; G1 Phase; Geminin; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation; Mice, Knockout; Mitosis

2019
Histone H3K9 demethylase JMJD1A is a co-activator of erythropoietin expression under hypoxia.
    The international journal of biochemistry & cell biology, 2019, Volume: 109

    Topics: Animals; Basic Helix-Loop-Helix Transcription Factors; Biocatalysis; Erythropoietin; Gene Expression Regulation; Hep G2 Cells; Histones; Humans; Hypoxia; Jumonji Domain-Containing Histone Demethylases; Lysine; Male; Methylation; Mice; Mice, Inbred C57BL; Transcription, Genetic

2019
Gamma radiation induces locus specific changes to histone modification enrichment in zebrafish and Atlantic salmon.
    PloS one, 2019, Volume: 14, Issue:2

    Topics: Animals; Embryonic Development; Gametogenesis; Gamma Rays; Genetic Loci; Histone Code; Histones; Lysine; Methylation; Salmo salar; Zebrafish

2019
Allyl isothiocyanate regulates lysine acetylation and methylation marks in an experimental model of malignant melanoma.
    European journal of nutrition, 2020, Volume: 59, Issue:2

    Topics: Acetylation; Animals; Blotting, Western; Cells, Cultured; Disease Models, Animal; Humans; Isothiocyanates; Lysine; Melanoma; Methylation; Mice

2020
Hibernation impacts lysine methylation dynamics in the 13-lined ground squirrel, Ictidomys tridecemlineatus.
    Journal of experimental zoology. Part A, Ecological and integrative physiology, 2019, Volume: 331, Issue:4

    Topics: Animals; Hibernation; Histone Methyltransferases; Histones; Liver; Lysine; Methylation; Methyltransferases; Muscle, Skeletal; Sciuridae; Transcription Factors

2019
H3K9me3, H3K36me3, and H4K20me3 Expression Correlates with Patient Outcome in Esophageal Squamous Cell Carcinoma as Epigenetic Markers.
    Digestive diseases and sciences, 2019, Volume: 64, Issue:8

    Topics: Adult; Aged; Biomarkers, Tumor; DNA Methylation; Epigenesis, Genetic; Esophageal Neoplasms; Esophageal Squamous Cell Carcinoma; Female; Histones; Humans; Immunohistochemistry; Lysine; Male; Methylation; Middle Aged; Predictive Value of Tests; Prognosis; Protein Processing, Post-Translational; Tissue Array Analysis

2019
An augmentation in histone dimethylation at lysine nine residues elicits vision impairment following traumatic brain injury.
    Free radical biology & medicine, 2019, Volume: 134

    Topics: Animals; Brain Injuries, Traumatic; Disease Models, Animal; Histones; Lysine; Male; Methylation; Mice; Mice, Inbred C57BL; Myelin Sheath; NF-E2-Related Factor 2; Optic Nerve; Oxidative Stress; Retinal Ganglion Cells; Vision Disorders

2019
H4K20me0 recognition by BRCA1-BARD1 directs homologous recombination to sister chromatids.
    Nature cell biology, 2019, Volume: 21, Issue:3

    Topics: Amino Acid Sequence; BRCA1 Protein; Cell Line, Tumor; Chromatids; DNA Breaks, Double-Stranded; DNA Repair; G2 Phase; HCT116 Cells; HeLa Cells; Histones; Homologous Recombination; Humans; Lysine; Methylation; S Phase; Sequence Homology, Amino Acid; Tumor Suppressor Proteins; Ubiquitin-Protein Ligases

2019
Ash1 counteracts Polycomb repression independent of histone H3 lysine 36 methylation.
    EMBO reports, 2019, Volume: 20, Issue:4

    Topics: Alleles; Animals; Chromatin; DNA-Binding Proteins; Drosophila; Drosophila Proteins; Gene Expression Regulation; Genetic Loci; Histone-Lysine N-Methyltransferase; Histones; Loss of Function Mutation; Lysine; Methylation; Phenotype; Polycomb-Group Proteins; Protein Binding; Protein Interaction Domains and Motifs; Transcription Factors

2019
SUMOylation of G9a regulates its function as an activator of myoblast proliferation.
    Cell death & disease, 2019, 03-13, Volume: 10, Issue:3

    Topics: Animals; Cell Differentiation; Cell Proliferation; Chlorocebus aethiops; Chromatin; COS Cells; E2F1 Transcription Factor; HEK293 Cells; Histocompatibility Antigens; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation; Mice; Mice, Transgenic; Muscle Development; Myoblasts, Skeletal; MyoD Protein; p300-CBP Transcription Factors; Protein Processing, Post-Translational; Sumoylation

2019
Histone H3 trimethylation at lysine 36 guides m
    Nature, 2019, Volume: 567, Issue:7748

    Topics: Adenosine; Animals; Cell Differentiation; Cell Line; Embryonic Stem Cells; Histones; Humans; Lysine; Methylation; Methyltransferases; Mice; RNA Polymerase II; RNA, Messenger; Transcription Elongation, Genetic; Transcription, Genetic; Transcriptome

2019
Histone serotonylation is a permissive modification that enhances TFIID binding to H3K4me3.
    Nature, 2019, Volume: 567, Issue:7749

    Topics: Animals; Cell Differentiation; Cell Line; Female; Gene Expression Regulation; Glutamine; GTP-Binding Proteins; Histones; Humans; Lysine; Methylation; Mice; Mice, Inbred C57BL; Protein Binding; Protein Glutamine gamma Glutamyltransferase 2; Protein Processing, Post-Translational; Serotonergic Neurons; Serotonin; Transcription Factor TFIID; Transglutaminases

2019
Hypoxia induces rapid changes to histone methylation and reprograms chromatin.
    Science (New York, N.Y.), 2019, 03-15, Volume: 363, Issue:6432

    Topics: Amino Acids, Dicarboxylic; Animals; Cell Hypoxia; Chromatin; Fibroblasts; HeLa Cells; Histones; Humans; Lysine; Methylation; Oxygen; Protein Domains; Retinoblastoma-Binding Protein 2

2019
Inhibition of Ezh2 In Vitro and the Decline of
    Stem cells and development, 2019, 05-15, Volume: 28, Issue:10

    Topics: Animals; Cell Differentiation; Cells, Cultured; Dopaminergic Neurons; Enhancer of Zeste Homolog 2 Protein; Epigenesis, Genetic; Histone Deacetylase Inhibitors; Histones; Indazoles; Lysine; Mesencephalon; Methylation; Neural Stem Cells; Nuclear Receptor Subfamily 4, Group A, Member 2; Promoter Regions, Genetic; Pyridones; Rats; Rats, Sprague-Dawley; RNA, Small Interfering; Tyrosine 3-Monooxygenase

2019
Regulation of RNA methylation by modified histones.
    Nature reviews. Genetics, 2019, Volume: 20, Issue:5

    Topics: Histones; Lysine; Methylation; RNA

2019
The expanding landscape of 'oncohistone' mutations in human cancers.
    Nature, 2019, Volume: 567, Issue:7749

    Topics: Cell Transformation, Neoplastic; Histones; Humans; Lysine; Methylation; Mutation; Neoplasms; Nucleosomes; Protein Domains; Protein Processing, Post-Translational

2019
Epigenetic regulation of phosphodiesterase 4d in restrictive cardiomyopathy mice with cTnI mutations.
    Science China. Life sciences, 2020, Volume: 63, Issue:4

    Topics: Acetylation; Animals; Cardiomyopathy, Restrictive; Cell Nucleus; Cyclic Nucleotide Phosphodiesterases, Type 4; Disease Models, Animal; DNA-Binding Proteins; Epigenesis, Genetic; Heart; Histone Deacetylase 1; Histones; Lysine; Methylation; Mice; Muscle Proteins; Mutation; Myocytes, Cardiac; Promoter Regions, Genetic; Transcription Factors; Troponin I

2020
Effect of Histone Lysine Methylation on DNA Lesion Reactivity in Nucleosome Core Particles.
    Chemical research in toxicology, 2019, 05-20, Volume: 32, Issue:5

    Topics: Antineoplastic Agents; DNA; DNA Damage; Histones; Lysine; Methylation; Nucleosomes

2019
IBM1-dependent H3K9 demethylation enables self-silencing of an exogenous silencer for the non-cell autonomous silencing of an endogenous target gene.
    Journal of genetics and genomics = Yi chuan xue bao, 2019, 03-20, Volume: 46, Issue:3

    Topics: Arabidopsis Proteins; Gene Silencing; Histones; Jumonji Domain-Containing Histone Demethylases; Lysine; Methylation

2019
Identification, Quantification, and System Analysis of Protein N-ε Lysine Methylation in Anucleate Blood Platelets.
    Proteomics, 2019, Volume: 19, Issue:11

    Topics: Blood Platelets; Endoplasmic Reticulum Chaperone BiP; Humans; Lysine; Methylation; Protein Processing, Post-Translational; Proteome; Proteomics; Tandem Mass Spectrometry

2019
Destabilization of chromosome structure by histone H3 lysine 27 methylation.
    PLoS genetics, 2019, Volume: 15, Issue:4

    Topics: Ascomycota; Chromosomes, Fungal; Gene Deletion; Genomic Instability; Heterochromatin; Histone-Lysine N-Methyltransferase; Histones; Lysine; Methylation; Repetitive Sequences, Nucleic Acid; Transcriptional Activation

2019
Asymmetric dimethylation and citrullination of proteinic arginine and homoarginine synthesis in human Helicobacter pylori infection.
    Amino acids, 2019, Volume: 51, Issue:6

    Topics: Adult; Aged; Aged, 80 and over; Arginine; Citrullination; Citrulline; Female; Gas Chromatography-Mass Spectrometry; Helicobacter Infections; Helicobacter pylori; Homoarginine; Humans; Lysine; Male; Methylation; Middle Aged; Nitric Oxide; Ornithine

2019
Substrate-Differentiated Transition States of SET7/9-Catalyzed Lysine Methylation.
    Journal of the American Chemical Society, 2019, 05-22, Volume: 141, Issue:20

    Topics: Catalysis; Histone-Lysine N-Methyltransferase; Histones; Humans; Kinetics; Lysine; Methylation; Protein Binding; Protein Conformation; Protein Processing, Post-Translational; S-Adenosylmethionine; Tumor Suppressor Protein p53

2019
Fine-tuning AKT kinase activity through direct lysine methylation.
    Cell cycle (Georgetown, Tex.), 2019, Volume: 18, Issue:9

    Topics: Animals; Carcinogenesis; Histone-Lysine N-Methyltransferase; Histones; Humans; Jumonji Domain-Containing Histone Demethylases; Lysine; Methylation; Neoplasms; Phosphatidylinositol 3-Kinases; Phosphorylation; Proto-Oncogene Proteins c-akt

2019
KMT9 monomethylates histone H4 lysine 12 and controls proliferation of prostate cancer cells.
    Nature structural & molecular biology, 2019, Volume: 26, Issue:5

    Topics: Cell Line, Tumor; Cell Proliferation; Dimerization; Histones; Humans; Lysine; Male; Methylation; Methyltransferases; Prostatic Neoplasms, Castration-Resistant; Site-Specific DNA-Methyltransferase (Adenine-Specific)

2019
Zfp281 Shapes the Transcriptome of Trophoblast Stem Cells and Is Essential for Placental Development.
    Cell reports, 2019, 05-07, Volume: 27, Issue:6

    Topics: Animals; Base Sequence; Cell Differentiation; Cell Line; Embryonic Stem Cells; Epigenesis, Genetic; Female; Fibroblast Growth Factors; Gene Expression Regulation, Developmental; Genetic Loci; Genetic Testing; Haploidy; Histones; Humans; Lysine; Methylation; Mice, Knockout; Placentation; Pregnancy; Repressor Proteins; Stem Cells; Transcription Factors; Transcription, Genetic; Transcriptome; Trophoblasts

2019
A new chromatographic approach to analyze methylproteome with enhanced lysine methylation identification performance.
    Analytica chimica acta, 2019, Aug-30, Volume: 1068

    Topics: Arginine; Chromatography, Affinity; Chromatography, Ion Exchange; Chromatography, Reverse-Phase; Hydrogen-Ion Concentration; Lysine; Methylation; Proteome

2019
SETD1A Methyltransferase Is Physically and Functionally Linked to the DNA Damage Repair Protein RAD18.
    Molecular & cellular proteomics : MCP, 2019, Volume: 18, Issue:7

    Topics: DNA Damage; DNA Repair; DNA-Binding Proteins; Down-Regulation; HEK293 Cells; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation; Phenotype; Protein Binding; Protein Interaction Maps; Protein Subunits; Proteomics; RNA, Messenger; Ubiquitin-Protein Ligases

2019
The SNP of rs6854845 suppresses transcription via the DNA looping structure alteration of super-enhancer in colon cells.
    Biochemical and biophysical research communications, 2019, 06-30, Volume: 514, Issue:3

    Topics: Base Sequence; Cell Line, Tumor; Chromatin; Colon; DNA; Enhancer Elements, Genetic; Epithelial Cells; Gene Expression Regulation, Neoplastic; Histones; Humans; Lysine; Methylation; Multigene Family; Nucleic Acid Conformation; Polymorphism, Single Nucleotide; Transcription, Genetic

2019
γ-Thialysine versus Lysine: An Insight into the Epigenetic Methylation of Histones.
    Bioconjugate chemistry, 2019, 06-19, Volume: 30, Issue:6

    Topics: Cysteine; Histone-Lysine N-Methyltransferase; Histones; Humans; Kinetics; Lysine; Methylation; Models, Molecular; Substrate Specificity

2019
Chromatin Immunoprecipitation Assay Using Micrococcal Nucleases in Mammalian Cells.
    Journal of visualized experiments : JoVE, 2019, 05-10, Issue:147

    Topics: Androgens; Animals; Cell Line, Tumor; Chromatin; Chromatin Immunoprecipitation; DNA; Enhancer Elements, Genetic; Genome, Human; Histones; Humans; Lysine; Mammals; Methylation; Micrococcal Nuclease; Promoter Regions, Genetic; RNA Polymerase II; Sonication

2019
Structural and biochemical characterization of Rv0187, an O-methyltransferase from Mycobacterium tuberculosis.
    Scientific reports, 2019, 05-30, Volume: 9, Issue:1

    Topics: Bacterial Proteins; Catalytic Domain; Catechol O-Methyltransferase; Coenzymes; Crystallography, X-Ray; Enzyme Assays; Lysine; Methylation; Models, Molecular; Mutation; Mycobacterium tuberculosis; Recombinant Proteins; S-Adenosylhomocysteine; Strontium; Substrate Specificity

2019
Insights into active intragenic enhancers.
    Biochemical and biophysical research communications, 2019, 07-30, Volume: 515, Issue:3

    Topics: Enhancer Elements, Genetic; Gene Expression Regulation; HeLa Cells; Histones; Humans; Lysine; Methylation; RNA Stability

2019
Hematopoietic stem and progenitor cell proliferation and differentiation requires the trithorax protein Ash2l.
    Scientific reports, 2019, 06-04, Volume: 9, Issue:1

    Topics: Animals; Cell Differentiation; Cell Proliferation; Chromatin; DNA-Binding Proteins; Gene Expression Regulation; Hematopoietic Stem Cells; Histone-Lysine N-Methyltransferase; Histones; Humans; Intracellular Signaling Peptides and Proteins; Lysine; Methylation; Mice; Myeloid-Lymphoid Leukemia Protein; Stem Cells; Transcription Factors

2019
Methylation of Histone H3K79 by Dot1L Requires Multiple Contacts with the Ubiquitinated Nucleosome.
    Molecular cell, 2019, 06-06, Volume: 74, Issue:5

    Topics: Histones; Lysine; Methylation; Methyltransferases; Nucleosomes; Ubiquitination

2019
H3K27me3 Signal in the Cis Regulatory Elements Reveals the Differentiation Potential of Progenitors During Drosophila Neuroglial Development.
    Genomics, proteomics & bioinformatics, 2019, Volume: 17, Issue:3

    Topics: Animals; Cell Differentiation; Drosophila melanogaster; Enhancer Elements, Genetic; Epigenesis, Genetic; Histones; Lysine; Methylation; Neural Stem Cells; Neurogenesis; Neuroglia; Nucleosomes; Promoter Regions, Genetic; Regulatory Sequences, Nucleic Acid; Stem Cells; Transcription Initiation Site

2019
Human FAM173A is a mitochondrial lysine-specific methyltransferase that targets adenine nucleotide translocase and affects mitochondrial respiration.
    The Journal of biological chemistry, 2019, 08-02, Volume: 294, Issue:31

    Topics: Amino Acid Sequence; Animals; Chromatography, High Pressure Liquid; HeLa Cells; Histone-Lysine N-Methyltransferase; Humans; Liver; Lysine; Mass Spectrometry; Methylation; Mitochondria; Mitochondrial ADP, ATP Translocases; Mitochondrial Proteins; Peptides; Protein Methyltransferases; Rats; Sequence Alignment

2019
The epigenetic regulator ATF7ip inhibits
    The Journal of experimental medicine, 2019, 09-02, Volume: 216, Issue:9

    Topics: Animals; Cell Differentiation; Colitis; DNA, Intergenic; Epigenesis, Genetic; Histones; Interleukin-2; Lysine; Methylation; Mice, Inbred C57BL; Receptors, Antigen, T-Cell; Repressor Proteins; Th17 Cells

2019
Tip60-dependent acetylation of KDM2B promotes osteosarcoma carcinogenesis.
    Journal of cellular and molecular medicine, 2019, Volume: 23, Issue:9

    Topics: Acetylation; Animals; Carcinogenesis; Cell Line, Tumor; F-Box Proteins; Gene Expression Regulation, Neoplastic; Heterografts; Histones; Humans; Jumonji Domain-Containing Histone Demethylases; Lysine; Lysine Acetyltransferase 5; Methylation; Mice; Osteosarcoma; Promoter Regions, Genetic; Protein Processing, Post-Translational

2019
DNMT3B shapes the mCA landscape and regulates mCG for promoter bivalency in human embryonic stem cells.
    Nucleic acids research, 2019, 08-22, Volume: 47, Issue:14

    Topics: Base Sequence; Cell Differentiation; Cell Line; CpG Islands; DNA (Cytosine-5-)-Methyltransferases; DNA Methylation; DNA Methyltransferase 3B; Histones; Human Embryonic Stem Cells; Humans; Lysine; Methylation; Mutation; Promoter Regions, Genetic; Protein Binding

2019
Exercise Modalities Improve Aversive Memory and Survival Rate in Aged Rats: Role of Hippocampal Epigenetic Modifications.
    Molecular neurobiology, 2019, Volume: 56, Issue:12

    Topics: Acetylation; Aging; Animals; Avoidance Learning; Chromatin; Epigenesis, Genetic; Hippocampus; Histones; Lysine; Male; Memory; Methylation; Physical Conditioning, Animal; Promoter Regions, Genetic; Rats, Wistar; Survival Rate

2019
Rational Adaptation of L3MBTL1 Inhibitors to Create Small-Molecule Cbx7 Antagonists.
    ChemMedChem, 2019, 08-06, Volume: 14, Issue:15

    Topics: Amino Acid Sequence; Enzyme Inhibitors; Humans; Lysine; Methylation; Models, Molecular; Molecular Structure; Niacinamide; Polycomb Repressive Complex 1; Protein Binding; Protein Conformation; Repressor Proteins; Structure-Activity Relationship; Sulfonamides; Tumor Suppressor Proteins

2019
Dysregulation of histone H3 lysine 27 trimethylation in transforming growth factor-β1-induced gene expression in mesangial cells and diabetic kidney.
    The Journal of biological chemistry, 2019, 08-23, Volume: 294, Issue:34

    Topics: Animals; Cells, Cultured; Diabetes Mellitus, Type 1; Diabetic Nephropathies; Gene Expression Regulation; Histones; Humans; Injections, Intraperitoneal; Lysine; Male; Mesangial Cells; Methylation; Mice; Mice, Inbred C57BL; Rats; Rats, Sprague-Dawley; Streptozocin; Transforming Growth Factor beta1

2019
EZH2, JMJD3, and UTX epigenetically regulate hepatic plasticity inducing retro-differentiation and proliferation of liver cells.
    Cell death & disease, 2019, 07-08, Volume: 10, Issue:7

    Topics: Benzazepines; Biomarkers; Cell Differentiation; Cell Line; Cell Proliferation; Cells, Cultured; Enhancer of Zeste Homolog 2 Protein; Epigenesis, Genetic; Gene Expression Profiling; Gene Expression Regulation, Developmental; Hepatocytes; Histone Demethylases; Histones; Humans; Indoles; Jumonji Domain-Containing Histone Demethylases; Liver; Lysine; Methylation; Principal Component Analysis; Pyridones; Pyrimidines

2019
Methylation of H3K27 and H3K4 in key gene promoter regions of thymus in RA mice is involved in the abnormal development and differentiation of iNKT cells.
    Immunogenetics, 2019, Volume: 71, Issue:7

    Topics: Animals; Arthritis, Experimental; Arthritis, Rheumatoid; Cell Differentiation; Epigenesis, Genetic; Gene Expression Regulation; Histone Demethylases; Lysine; Methylation; Mice, Inbred DBA; Natural Killer T-Cells; Promoter Regions, Genetic; Promyelocytic Leukemia Zinc Finger Protein; Spleen; T-Box Domain Proteins; Thymus Gland

2019
p300 Acetylates JHDM1A to inhibit osteosarcoma carcinogenesis.
    Artificial cells, nanomedicine, and biotechnology, 2019, Volume: 47, Issue:1

    Topics: Acetylation; Animals; Apoptosis Regulatory Proteins; Carcinogenesis; Cyclin-Dependent Kinase Inhibitor p21; E1A-Associated p300 Protein; F-Box Proteins; Histones; Humans; Jumonji Domain-Containing Histone Demethylases; Lysine; Methylation; Mice; Nucleosomes; Osteosarcoma; Proto-Oncogene Proteins; Transcription, Genetic

2019
Substrate docking-mediated specific and efficient lysine methylation by the SET domain-containing histone methyltransferase SETD7.
    The Journal of biological chemistry, 2019, 09-06, Volume: 294, Issue:36

    Topics: Biocatalysis; Catalytic Domain; Histone-Lysine N-Methyltransferase; Humans; Lysine; Methylation; Substrate Specificity

2019
Vitamin C-dependent lysine demethylase 6 (KDM6)-mediated demethylation promotes a chromatin state that supports the endothelial-to-hematopoietic transition.
    The Journal of biological chemistry, 2019, 09-13, Volume: 294, Issue:37

    Topics: Animals; Animals, Genetically Modified; Ascorbic Acid; Cell Differentiation; Chromatin; Demethylation; Endothelial Cells; Hematopoietic Stem Cells; Histone Demethylases; Histones; Humans; Jumonji Domain-Containing Histone Demethylases; Lysine; Methylation; Pluripotent Stem Cells; Zebrafish

2019
The histone methyltransferase Setd2 is indispensable for V(D)J recombination.
    Nature communications, 2019, 07-26, Volume: 10, Issue:1

    Topics: Amino Acid Motifs; Animals; B-Lymphocytes; Cell Differentiation; Child, Preschool; Epigenesis, Genetic; Histone-Lysine N-Methyltransferase; Histones; Humans; Infant; Lysine; Male; Methylation; Mice; Mice, Inbred C57BL; Mice, Knockout; Mutation; Primary Immunodeficiency Diseases; Receptors, Antigen, T-Cell, alpha-beta; T-Lymphocytes; V(D)J Recombination

2019
The novel methyltransferase SETD4 regulates TLR agonist-induced expression of cytokines through methylation of lysine 4 at histone 3 in macrophages.
    Molecular immunology, 2019, Volume: 114

    Topics: Animals; Cell Line; Chromosomal Proteins, Non-Histone; Cytokines; Histones; Inflammation; Lysine; Macrophages; Methylation; Methyltransferases; Mice; Mice, Inbred C57BL; Mice, Knockout; NF-kappa B; Phosphorylation; Promoter Regions, Genetic; RAW 264.7 Cells; Signal Transduction; Toll-Like Receptors

2019
The SETD6 Methyltransferase Plays an Essential Role in Hippocampus-Dependent Memory Formation.
    Biological psychiatry, 2020, 03-15, Volume: 87, Issue:6

    Topics: Animals; Hippocampus; Histone-Lysine N-Methyltransferase; Lysine; Memory; Methylation; Rats

2020
Structural basis for the target specificity of actin histidine methyltransferase SETD3.
    Nature communications, 2019, 08-06, Volume: 10, Issue:1

    Topics: Actins; Catalytic Domain; Crystallography, X-Ray; Histidine; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Lysine; Methylation; Recombinant Proteins; Substrate Specificity

2019
Identification of lysine methylation in the core GTPase domain by GoMADScan.
    PloS one, 2019, Volume: 14, Issue:8

    Topics: Amino Acid Sequence; Data Mining; GTP Phosphohydrolases; Lysine; Methylation; Molecular Dynamics Simulation; Protein Domains; Protein Processing, Post-Translational

2019
The MLL1 trimeric catalytic complex is a dynamic conformational ensemble stabilized by multiple weak interactions.
    Nucleic acids research, 2019, 09-26, Volume: 47, Issue:17

    Topics: Catalysis; DNA-Binding Proteins; Epigenesis, Genetic; Histone-Lysine N-Methyltransferase; Histones; Humans; Intracellular Signaling Peptides and Proteins; Lysine; Methylation; Models, Molecular; Multiprotein Complexes; Myeloid-Lymphoid Leukemia Protein; PR-SET Domains; Protein Conformation; Protein Interaction Maps; WD40 Repeats

2019
Quantitative analysis of post-translational modifications of histone H3 variants during the cell cycle.
    Analytica chimica acta, 2019, Nov-08, Volume: 1080

    Topics: Acetylation; Amino Acid Sequence; Cell Cycle; Cell Line, Tumor; Chromatography, Liquid; Histones; Humans; Lysine; Mass Spectrometry; Methylation; Protein Isoforms; Protein Processing, Post-Translational

2019
H3K27me3-mediated silencing of structural genes is required for zebrafish heart regeneration.
    Development (Cambridge, England), 2019, 10-09, Volume: 146, Issue:19

    Topics: Animals; Cell Proliferation; Cytokinesis; Cytoskeleton; Gene Expression Regulation, Developmental; Gene Silencing; Heart; Histones; Lysine; Methylation; Myocytes, Cardiac; Regeneration; Sarcomeres; Zebrafish

2019
LSD1 Inhibition Promotes Epithelial Differentiation through Derepression of Fate-Determining Transcription Factors.
    Cell reports, 2019, 08-20, Volume: 28, Issue:8

    Topics: 3T3 Cells; Adult; Animals; Binding Sites; Carcinoma, Squamous Cell; Cell Differentiation; Cell Line, Tumor; Cell Lineage; Epidermis; Epithelial Cells; Gene Expression Regulation; Genome, Human; Histone Demethylases; Histones; Humans; Lysine; Methylation; Mice; Protein Binding; Snail Family Transcription Factors; Transcription Factors; Transcription, Genetic

2019
Genome-wide identification of histone methylation (H3K9
    BMC genomics, 2019, Aug-22, Volume: 20, Issue:1

    Topics: Acetylation; Cell Respiration; Epigenomics; Genome, Plant; Genomics; Histones; Lysine; Methylation; Panicum; Photosynthesis; Transcription Factors

2019
H3K4 dimethylation at FosB promoter in the striatum of chronic stressed rats promotes morphine-induced conditioned place preference.
    PloS one, 2019, Volume: 14, Issue:8

    Topics: Animals; Chronic Disease; Conditioning, Classical; Gene Expression Regulation; Histones; Lysine; Male; Methylation; Models, Biological; Morphine; Neostriatum; Promoter Regions, Genetic; Proto-Oncogene Proteins c-fos; Rats, Sprague-Dawley; Receptors, Glucocorticoid; Stress, Psychological; Transcription, Genetic

2019
Quantification of Tau Protein Lysine Methylation in Aging and Alzheimer's Disease.
    Journal of Alzheimer's disease : JAD, 2019, Volume: 71, Issue:3

    Topics: Aged; Aged, 80 and over; Aging; Alzheimer Disease; Cells, Cultured; Chromatography, High Pressure Liquid; Female; Humans; Lysine; Male; Metabolomics; Methylation; Middle Aged; Phosphorylation; Protein Processing, Post-Translational; Proteomics; Tandem Mass Spectrometry; tau Proteins

2019
The role of Xist-mediated Polycomb recruitment in the initiation of X-chromosome inactivation.
    EMBO reports, 2019, 10-04, Volume: 20, Issue:10

    Topics: Animals; Female; Histones; Lysine; Methylation; Mice; Models, Genetic; Mutation; Polycomb-Group Proteins; Protein Interaction Maps; Repetitive Sequences, Nucleic Acid; RNA, Long Noncoding; Transcription, Genetic; X Chromosome; X Chromosome Inactivation

2019
H3K14 ubiquitylation promotes H3K9 methylation for heterochromatin assembly.
    EMBO reports, 2019, 10-04, Volume: 20, Issue:10

    Topics: Amino Acid Sequence; Heterochromatin; Histones; Lysine; Methylation; Methyltransferases; Mutation; Schizosaccharomyces; Schizosaccharomyces pombe Proteins; Ubiquitination

2019
Maintenance of spatial gene expression by Polycomb-mediated repression after formation of a vertebrate body plan.
    Development (Cambridge, England), 2019, 09-30, Volume: 146, Issue:19

    Topics: Animals; Body Patterning; Embryo, Nonmammalian; Epigenesis, Genetic; Gene Expression Regulation, Developmental; Histones; Lysine; Methylation; Mutation; Polycomb-Group Proteins; Proteome; Repressor Proteins; RNA, Messenger; Transcription Factors; Transcriptome; Vertebrates; Zebrafish; Zygote

2019
Regulation of histone methylation by automethylation of PRC2.
    Genes & development, 2019, 10-01, Volume: 33, Issue:19-20

    Topics: Enhancer of Zeste Homolog 2 Protein; Enzyme Activation; Gene Expression Regulation; Histones; Humans; Lysine; Methylation; Polycomb Repressive Complex 2; Protein Processing, Post-Translational; Recombinant Proteins

2019
Automethylation of PRC2 promotes H3K27 methylation and is impaired in H3K27M pediatric glioma.
    Genes & development, 2019, 10-01, Volume: 33, Issue:19-20

    Topics: Child; Enzyme Activation; Gene Silencing; Glioma; Histones; Humans; Lysine; Methylation; Polycomb Repressive Complex 2; Protein Subunits

2019
Engineering Methyllysine Writers and Readers for Allele-Specific Regulation of Protein-Protein Interactions.
    Journal of the American Chemical Society, 2019, 10-02, Volume: 141, Issue:39

    Topics: Amino Acid Sequence; Binding Sites; Humans; Lysine; Methylation; Methyltransferases; Models, Molecular; Protein Binding; Protein Conformation; Protein Engineering; Protein Interaction Domains and Motifs; Protein Processing, Post-Translational

2019
Rotamer Jumps, Proton Exchange, and Amine Inversion Dynamics of Dimethylated Lysine Residues in Proteins Resolved by pH-Dependent
    The journal of physical chemistry. B, 2019, 11-21, Volume: 123, Issue:46

    Topics: Amines; Carbon-13 Magnetic Resonance Spectroscopy; Hydrogen-Ion Concentration; Lysine; Methylation; Proteins; Proton Magnetic Resonance Spectroscopy; Protons; Solvents

2019
Reduction of Global H3K27me
    Cell reports, 2019, 10-08, Volume: 29, Issue:2

    Topics: Adult; Animals; Breast Neoplasms; Cell Line, Tumor; Drug Resistance, Neoplasm; Enhancer of Zeste Homolog 2 Protein; Female; Histones; Humans; Interferon Type I; Lysine; Methylation; Mice; Models, Biological; Molecular Targeted Therapy; Polycomb Repressive Complex 2; Receptor, ErbB-2; Retroelements; Trastuzumab; Up-Regulation

2019
Quantitative analysis of global protein lysine methylation by mass spectrometry.
    Methods in enzymology, 2019, Volume: 626

    Topics: Animals; Chromatography, Liquid; Humans; Lysine; Methylation; Protein Processing, Post-Translational; Proteins; Tandem Mass Spectrometry

2019
Dephosphorylation of p53 Ser 392 Enhances Trimethylation of Histone H3 Lys 9 via SUV39h1 Stabilization in CK2 Downregulation-Mediated Senescence.
    Molecules and cells, 2019, Nov-30, Volume: 42, Issue:11

    Topics: Casein Kinase II; Cell Line, Tumor; Cellular Senescence; Cyclin-Dependent Kinase Inhibitor p21; Down-Regulation; HCT116 Cells; Heterochromatin; Histones; Humans; Lysine; MCF-7 Cells; Methylation; Methyltransferases; Phosphorylation; Protein Stability; Repressor Proteins; RNA Interference; Serine; Signal Transduction; Tumor Suppressor Protein p53

2019
Inhibition of Polycomb Repressive Complex 2 activity reduces trimethylation of H3K27 and affects development in Arabidopsis seedlings.
    BMC plant biology, 2019, Oct-16, Volume: 19, Issue:1

    Topics: Arabidopsis; Arabidopsis Proteins; Enhancer of Zeste Homolog 2 Protein; Enzyme Inhibitors; Gene Expression Regulation, Developmental; Gene Expression Regulation, Plant; Histones; Lysine; Methylation; Polycomb Repressive Complex 2; Repressor Proteins; Rutin; Seedlings; Seeds

2019
Engineered Reader Proteins for Enhanced Detection of Methylated Lysine on Histones.
    ACS chemical biology, 2020, 01-17, Volume: 15, Issue:1

    Topics: Amino Acid Sequence; Animals; Binding Sites; Chromatin; Chromobox Protein Homolog 5; Cloning, Molecular; Drosophila melanogaster; Epigenesis, Genetic; Gene Expression Regulation; Histones; Humans; Lysine; Methylation; Models, Molecular; Mutation; Nucleosomes; Protein Binding; Protein Conformation; Protein Processing, Post-Translational; Recombinant Proteins; Substrate Specificity

2020
CRISPR/Transposon gene integration (CRITGI) can manage gene expression in a retrotransposon-dependent manner.
    Scientific reports, 2019, 10-25, Volume: 9, Issue:1

    Topics: Binding Sites; Chromatin; CRISPR-Cas Systems; Gene Expression Regulation, Fungal; Genes, Fungal; Histones; Lysine; Methylation; Models, Genetic; Mutagenesis, Insertional; Promoter Regions, Genetic; Retroelements; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins; Transcription, Genetic; Transcriptional Activation

2019
Histone Methylations Define Neural Stem/Progenitor Cell Subtypes in the Mouse Subventricular Zone.
    Molecular neurobiology, 2020, Volume: 57, Issue:2

    Topics: Animals; Doublecortin Protein; Epigenesis, Genetic; Histones; Lateral Ventricles; Lysine; Methylation; Mice, Inbred C57BL; Neural Stem Cells; Neurogenesis; Protein Processing, Post-Translational; Regeneration; Stem Cells

2020
Inducible histone K-to-M mutations are dynamic tools to probe the physiological role of site-specific histone methylation in vitro and in vivo.
    Nature cell biology, 2019, Volume: 21, Issue:11

    Topics: Animals; Bone Marrow Transplantation; Cell Lineage; Disease Models, Animal; Doxycycline; Epigenesis, Genetic; Erythroid Cells; Female; Granulocytes; Histones; Leukemia, T-Cell; Lysine; Male; Methionine; Methylation; Mice; Mice, Transgenic; Mouse Embryonic Stem Cells; Mutation; Signal Transduction; Survival Analysis; T-Lymphocytes; Teratoma

2019
Function of the MYND Domain and C-Terminal Region in Regulating the Subcellular Localization and Catalytic Activity of the SMYD Family Lysine Methyltransferase Set5.
    Molecular and cellular biology, 2020, 01-03, Volume: 40, Issue:2

    Topics: Catalytic Domain; Chromatin; Histones; Lysine; Methylation; Methyltransferases; MYND Domains; Phosphorylation; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins

2020
Regulation of EZH2 by SMYD2-Mediated Lysine Methylation Is Implicated in Tumorigenesis.
    Cell reports, 2019, 11-05, Volume: 29, Issue:6

    Topics: Breast Neoplasms; Carcinogenesis; Cell Line, Tumor; Cell Proliferation; Chromatin; Chromatin Immunoprecipitation; Databases, Genetic; Disease Progression; Enhancer of Zeste Homolog 2 Protein; Female; Gene Expression Regulation, Neoplastic; Histone Demethylases; Histone-Lysine N-Methyltransferase; Humans; Lysine; Methylation; Polycomb Repressive Complex 2; Protein Processing, Post-Translational

2019
Protein Methylation and Translation: Role of Lysine Modification on the Function of Yeast Elongation Factor 1A.
    Biochemistry, 2019, 12-10, Volume: 58, Issue:49

    Topics: Amino Acid Motifs; Lysine; Methylation; Methyltransferases; Peptide Elongation Factor 1; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins

2019
TCF19 Promotes Cell Proliferation through Binding to the Histone H3K4me3 Mark.
    Biochemistry, 2020, 02-04, Volume: 59, Issue:4

    Topics: Carcinoma, Hepatocellular; Cell Line, Tumor; Cell Proliferation; DNA-Binding Proteins; Hep G2 Cells; Histone Code; Histones; Humans; Liver Neoplasms; Lysine; Methylation; Models, Molecular; PHD Zinc Fingers; Protein Binding; Transcription Factors

2020
SET7/9 interacts and methylates the ribosomal protein, eL42 and regulates protein synthesis.
    Biochimica et biophysica acta. Molecular cell research, 2020, Volume: 1867, Issue:2

    Topics: Amino Acid Sequence; HEK293 Cells; Histone-Lysine N-Methyltransferase; Humans; Lysine; Methylation; Protein Biosynthesis; Protein Domains; Protein Interaction Domains and Motifs; Protein Subunits; Ribosomal Proteins; RNA Interference; RNA, Small Interfering; Two-Hybrid System Techniques

2020
Protein lysine methylation contributes to modulating the response of sensitive and tolerant Arabidopsis species to cadmium stress.
    Plant, cell & environment, 2020, Volume: 43, Issue:3

    Topics: Adaptation, Physiological; Amino Acid Sequence; Arabidopsis; Arabidopsis Proteins; Cadmium; Gene Expression Regulation, Plant; Lysine; Methylation; Methyltransferases; Mutation; Plant Roots; Stress, Physiological

2020
PRMT1-mediated methylation of the microprocessor-associated proteins regulates microRNA biogenesis.
    Nucleic acids research, 2020, 01-10, Volume: 48, Issue:1

    Topics: Animals; Arginine; Cell Nucleus; Epigenesis, Genetic; HEK293 Cells; HeLa Cells; Humans; Isotope Labeling; Lysine; Methylation; MicroRNAs; Nuclear Factor 90 Proteins; Protein Binding; Protein-Arginine N-Methyltransferases; Repressor Proteins; RNA, Small Interfering

2020
The MADS-box transcription factor PHERES1 controls imprinting in the endosperm by binding to domesticated transposons.
    eLife, 2019, 12-02, Volume: 8

    Topics: Amino Acid Motifs; Arabidopsis; Arabidopsis Proteins; Base Sequence; Crosses, Genetic; DNA Transposable Elements; Domestication; Endosperm; Epigenesis, Genetic; Gene Expression Regulation, Plant; Genes, Plant; Genomic Imprinting; Histones; Lysine; MADS Domain Proteins; Methylation; Polyploidy; Promoter Regions, Genetic; Protein Binding; Seeds

2019
TSPAN8 promotes colorectal cancer cell growth and migration in LSD1-dependent manner.
    Life sciences, 2020, Jan-15, Volume: 241

    Topics: Cell Line, Tumor; Cell Movement; Cell Proliferation; Colorectal Neoplasms; Epithelial-Mesenchymal Transition; Gene Expression Regulation, Neoplastic; Histone Demethylases; Histones; Humans; Lysine; Methylation; Promoter Regions, Genetic; Tetraspanins

2020
Cryo-EM structure of the human MLL1 core complex bound to the nucleosome.
    Nature communications, 2019, 12-05, Volume: 10, Issue:1

    Topics: Animals; Cell Nucleus; Cryoelectron Microscopy; DNA-Binding Proteins; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation; Mutation; Myeloid-Lymphoid Leukemia Protein; Nuclear Proteins; Nucleosomes; Protein Binding; Transcription Factors; Xenopus laevis

2019
Protein methylome analysis in Arabidopsis reveals regulation in RNA-related processes.
    Journal of proteomics, 2020, 02-20, Volume: 213

    Topics: Arabidopsis; Epigenome; Lysine; Methylation; Protein Processing, Post-Translational; RNA

2020
Repressive H3K9me2 protects lifespan against the transgenerational burden of COMPASS activity in
    eLife, 2019, 12-09, Volume: 8

    Topics: Animals; Caenorhabditis elegans; Caenorhabditis elegans Proteins; Heterochromatin; Histone-Lysine N-Methyltransferase; Histones; Inheritance Patterns; Jumonji Domain-Containing Histone Demethylases; Longevity; Lysine; Methylation; Mutation

2019
Defining decreased protein succinylation of failing human cardiac myofibrils in ischemic cardiomyopathy.
    Journal of molecular and cellular cardiology, 2020, Volume: 138

    Topics: Acylation; Cardiomyopathies; Heart Failure; Humans; Lysine; Methylation; Middle Aged; Mitochondrial Proteins; Myocardial Ischemia; Myocardium; Myofibrils; Proteomics; Reproducibility of Results; Succinic Acid; Tissue Donors

2020
Global characterization of proteome and lysine methylome features in EZH2 wild-type and mutant lymphoma cell lines.
    Journal of proteomics, 2020, 02-20, Volume: 213

    Topics: Cell Line; Enhancer of Zeste Homolog 2 Protein; Epigenome; Humans; Lymphoma; Lysine; Methylation; Proteome

2020
Methylation of PLK1 by SET7/9 ensures accurate kinetochore-microtubule dynamics.
    Journal of molecular cell biology, 2020, 07-03, Volume: 12, Issue:6

    Topics: Cell Cycle Proteins; Chromosomes, Human; G2 Phase; HEK293 Cells; HeLa Cells; Histone-Lysine N-Methyltransferase; Homeostasis; Humans; Kinetochores; Lysine; Methylation; Microtubules; Mitosis; Polo-Like Kinase 1; Protein Serine-Threonine Kinases; Proto-Oncogene Proteins; Substrate Specificity

2020
H2A.Z facilitates licensing and activation of early replication origins.
    Nature, 2020, Volume: 577, Issue:7791

    Topics: DNA; DNA Replication; DNA Replication Timing; Epigenesis, Genetic; HeLa Cells; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation; Nucleosomes; Origin Recognition Complex; Replication Origin

2020
Histone H3K9 methylation is involved in temporomandibular joint osteoarthritis.
    International journal of molecular medicine, 2020, Volume: 45, Issue:2

    Topics: Aging; Animals; Apoptosis; Cell Proliferation; Female; Histones; Lysine; Methylation; Mice; Mice, Inbred C57BL; Osteoarthritis; Temporomandibular Joint

2020
A comprehensive epigenomic analysis of phenotypically distinguishable, genetically identical female and male Daphnia pulex.
    BMC genomics, 2020, Jan-06, Volume: 21, Issue:1

    Topics: Animals; Daphnia; DNA Methylation; Epigenesis, Genetic; Epigenomics; Female; Gene Expression; Histones; Lysine; Male; Methylation; Phenotype; Promoter Regions, Genetic; Sex Factors

2020
Epigenetic priming by Dot1l in lymphatic endothelial progenitors ensures normal lymphatic development and function.
    Cell death & disease, 2020, 01-06, Volume: 11, Issue:1

    Topics: Animals; Endothelial Cells; Epigenesis, Genetic; Gene Expression Regulation; Histone-Lysine N-Methyltransferase; Histones; Lymphatic Vessels; Lysine; Methylation; Mice; Receptor, TIE-2; Transcription, Genetic

2020
A crucial RNA-binding lysine residue in the Nab3 RRM domain undergoes SET1 and SET3-responsive methylation.
    Nucleic acids research, 2020, 04-06, Volume: 48, Issue:6

    Topics: Histone Deacetylases; Histone-Lysine N-Methyltransferase; Lysine; Methylation; Nuclear Proteins; Protein Binding; RNA; RNA Recognition Motif; RNA-Binding Proteins; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins; Structure-Activity Relationship

2020
SIRT6 coordinates with CHD4 to promote chromatin relaxation and DNA repair.
    Nucleic acids research, 2020, 04-06, Volume: 48, Issue:6

    Topics: Cell Line, Tumor; Cell Survival; Chromatin; Chromobox Protein Homolog 5; Chromosomal Proteins, Non-Histone; DNA Breaks, Double-Stranded; DNA Repair; HEK293 Cells; Histones; Humans; Lysine; Methylation; Mi-2 Nucleosome Remodeling and Deacetylase Complex; Models, Biological; Protein Binding; Protein Domains; Sirtuins

2020
Histone methyltransferase G9a diminishes expression of cannabinoid CB
    The Journal of biological chemistry, 2020, 03-13, Volume: 295, Issue:11

    Topics: Analgesics; Animals; Cells, Cultured; Ganglia, Spinal; Gene Deletion; Gene Silencing; Glutamates; Histone-Lysine N-Methyltransferase; Histones; Lysine; Male; Methylation; Mice, Inbred C57BL; Nerve Tissue; Neuralgia; Promoter Regions, Genetic; Rats, Sprague-Dawley; Receptor, Cannabinoid, CB1; Receptor, Cannabinoid, CB2; Sensory Receptor Cells; Spinal Cord

2020
miR24-2 accelerates progression of liver cancer cells by activating Pim1 through tri-methylation of Histone H3 on the ninth lysine.
    Journal of cellular and molecular medicine, 2020, Volume: 24, Issue:5

    Topics: Animals; Base Sequence; Cell Line, Tumor; Cell Proliferation; Disease Progression; Gene Expression Regulation, Neoplastic; Histones; Humans; Jumonji Domain-Containing Histone Demethylases; Liver Neoplasms; Lysine; Male; Methylation; Methyltransferases; Mice, Inbred BALB C; Mice, Nude; MicroRNAs; Models, Biological; Oncogenes; Proto-Oncogene Proteins c-pim-1

2020
Methylation of geometrically constrained lysine analogues by histone lysine methyltransferases.
    Chemical communications (Cambridge, England), 2020, Mar-10, Volume: 56, Issue:20

    Topics: Alkenes; Alkynes; Biocatalysis; Histone-Lysine N-Methyltransferase; Humans; Lysine; Methylation; Molecular Conformation

2020
Monitoring the crosstalk between methylation and phosphorylation on histone peptides with host-assisted capillary electrophoresis.
    Analytical and bioanalytical chemistry, 2020, Volume: 412, Issue:24

    Topics: Amino Acid Sequence; Electrophoresis, Capillary; Histones; Lysine; Methylation; Peptides; Phosphorylation; Protein Processing, Post-Translational

2020
Histone demethylase KDM4D cooperates with NFIB and MLL1 complex to regulate adipogenic differentiation of C3H10T1/2 mesenchymal stem cells.
    Scientific reports, 2020, 02-20, Volume: 10, Issue:1

    Topics: Adipogenesis; Animals; CCAAT-Enhancer-Binding Protein-alpha; Cell Differentiation; Cell Line; Histone-Lysine N-Methyltransferase; Histones; Jumonji Domain-Containing Histone Demethylases; Lysine; Mesenchymal Stem Cells; Methylation; Mice; Models, Biological; Myeloid-Lymphoid Leukemia Protein; NFI Transcription Factors; PPAR gamma; Promoter Regions, Genetic; Protein Binding

2020
A novel EZH2 inhibitor induces synthetic lethality and apoptosis in PBRM1-deficient cancer cells.
    Cell cycle (Georgetown, Tex.), 2020, Volume: 19, Issue:7

    Topics: Apoptosis; Cell Line, Tumor; Cell Proliferation; DNA-Binding Proteins; Drug Screening Assays, Antitumor; Enhancer of Zeste Homolog 2 Protein; Histones; Humans; Indoles; Lysine; Methylation; Molecular Docking Simulation; Molecular Dynamics Simulation; Neoplasms; Prognosis; Pyridones; Reproducibility of Results; Synthetic Lethal Mutations; Transcription Factors

2020
Two conserved epigenetic regulators prevent healthy ageing.
    Nature, 2020, Volume: 579, Issue:7797

    Topics: Aging; Animals; Caenorhabditis elegans; Caenorhabditis elegans Proteins; Cognition; Cognitive Dysfunction; Epigenesis, Genetic; Healthy Aging; Histone-Lysine N-Methyltransferase; Histones; Humans; Longevity; Lysine; Male; Memory; Methylation; Mice; Mitochondria; Neurons; Proteins; RNA Interference; Spatial Learning; Transcription Factors, General

2020
Isoform-Specific Lysine Methylation of RORα2 by SETD7 Is Required for Association of the TIP60 Coactivator Complex in Prostate Cancer Progression.
    International journal of molecular sciences, 2020, Feb-27, Volume: 21, Issue:5

    Topics: Animals; Cell Proliferation; Chromatin Immunoprecipitation; Chromatography, Liquid; Disease Progression; Gene Expression Regulation, Neoplastic; Histone-Lysine N-Methyltransferase; Humans; Lysine; Lysine Acetyltransferase 5; Male; Methylation; Mice; Mice, Nude; Nuclear Receptor Subfamily 1, Group F, Member 1; Oncogenes; PC-3 Cells; Prostatic Neoplasms; Protein Binding; Protein Domains; Protein Isoforms; Tandem Mass Spectrometry; Trans-Activators

2020
Natural T Cell Epitope Containing Methyl Lysines on Mycobacterial Heparin-Binding Hemagglutinin.
    Journal of immunology (Baltimore, Md. : 1950), 2020, 04-01, Volume: 204, Issue:7

    Topics: Antigens, Bacterial; Epitopes, T-Lymphocyte; Humans; Interferon-gamma; Lectins; Lysine; Methylation; Mycobacterium smegmatis; Mycobacterium tuberculosis; Protein Processing, Post-Translational; T-Lymphocytes

2020
Computational approaches to studying methylated H4K20 recognition by DNA repair factor 53BP1.
    Physical chemistry chemical physics : PCCP, 2020, Mar-21, Volume: 22, Issue:11

    Topics: Computational Biology; Histones; Lysine; Methylation; Models, Molecular; Protein Binding; Protein Stability; Protein Structure, Quaternary; Tumor Suppressor p53-Binding Protein 1

2020
Coordinated demethylation of H3K9 and H3K27 is required for rapid inflammatory responses of endothelial cells.
    The EMBO journal, 2020, 04-01, Volume: 39, Issue:7

    Topics: Animals; Cell Adhesion; Endothelial Cells; Gene Expression Regulation; Gene Regulatory Networks; Histone Demethylases; Histones; Human Umbilical Vein Endothelial Cells; Humans; Jumonji Domain-Containing Histone Demethylases; Lysine; Male; Methylation; Mice; MicroRNAs; Signal Transduction; Tumor Necrosis Factor-alpha

2020
A methylated lysine is a switch point for conformational communication in the chaperone Hsp90.
    Nature communications, 2020, 03-05, Volume: 11, Issue:1

    Topics: Adenosine Triphosphate; Amino Acid Sequence; Conserved Sequence; HSP90 Heat-Shock Proteins; Lysine; Methylation; Molecular Dynamics Simulation; Mutation; Nucleotides; Saccharomyces cerevisiae; Structure-Activity Relationship

2020
Trimethylation of histone H3K76 by Dot1B enhances cell cycle progression after mitosis in Trypanosoma cruzi.
    Biochimica et biophysica acta. Molecular cell research, 2020, Volume: 1867, Issue:7

    Topics: Cell Cycle; Chagas Disease; Histone-Lysine N-Methyltransferase; Histones; Lysine; Methylation; Mitosis; Nuclear Proteins; Phosphorylation; Trypanosoma cruzi

2020
The Dm-Myb Oncoprotein Contributes to Insulator Function and Stabilizes Repressive H3K27me3 PcG Domains.
    Cell reports, 2020, 03-10, Volume: 30, Issue:10

    Topics: Animals; Cell Cycle Proteins; Drosophila melanogaster; Drosophila Proteins; Histones; Insulator Elements; Lysine; Methylation; Oncogene Proteins; Polycomb-Group Proteins; Protein Binding; Protein Domains; Protein Stability; Proto-Oncogene Proteins c-myb; RNA Polymerase II; Transcription Initiation Site

2020
KMT Set7/9 is a new regulator of Sam68 STAR-protein.
    Biochemical and biophysical research communications, 2020, 05-14, Volume: 525, Issue:4

    Topics: Adaptor Proteins, Signal Transducing; Apoptosis; Cell Cycle; Cell Cycle Proteins; Cell Line, Tumor; Colonic Neoplasms; Computational Biology; Cytoplasm; DNA-Binding Proteins; Gene Expression Regulation, Neoplastic; Gene Knockout Techniques; Histone-Lysine N-Methyltransferase; Humans; Lysine; Mass Spectrometry; Methylation; Protein Binding; Protein Domains; Protein Interaction Maps; RNA-Binding Proteins

2020
Identification of a PRC2 Accessory Subunit Required for Subtelomeric H3K27 Methylation in Neurospora crassa.
    Molecular and cellular biology, 2020, 05-14, Volume: 40, Issue:11

    Topics: Gene Deletion; Histones; Lysine; Methylation; Neurospora crassa; Polycomb Repressive Complex 2; Protein Subunits; Protozoan Proteins

2020
Highly Sensitive and Multiplexed In-Situ Protein Profiling with Cleavable Fluorescent Streptavidin.
    Cells, 2020, 04-01, Volume: 9, Issue:4

    Topics: Antibodies; Biotin; Fluorescence; Fluorescent Dyes; Formaldehyde; HeLa Cells; Histones; Humans; Ki-67 Antigen; Lysine; Methylation; Paraffin Embedding; Proteins; Streptavidin; Tissue Fixation

2020
H3K4me3 Is a Potential Mediator for Antiproliferative Effects of Calcitriol (1α,25(OH)2D3) in Ovarian Cancer Biology.
    International journal of molecular sciences, 2020, Mar-20, Volume: 21, Issue:6

    Topics: Adult; Aged; Aged, 80 and over; Calcitriol; Cell Line, Tumor; Cell Proliferation; Epigenesis, Genetic; Female; Histones; Humans; Kaplan-Meier Estimate; Lysine; Methylation; Middle Aged; Multivariate Analysis; Ovarian Neoplasms; Proportional Hazards Models; Receptors, Calcitriol; Survival Analysis

2020
Two-Level Protein Methylation Prediction using structure model-based features.
    Scientific reports, 2020, 04-07, Volume: 10, Issue:1

    Topics: Amino Acid Sequence; Animals; Arginine; Databases, Protein; Humans; Lysine; Methylation; Models, Biological; Models, Molecular; Protein Processing, Post-Translational; Proteins; Support Vector Machine

2020
Comprehensive histochemical profiles of histone modification in male germline cells during meiosis and spermiogenesis: Comparison of young and aged testes in mice.
    PloS one, 2020, Volume: 15, Issue:4

    Topics: Acetylation; Animals; Epigenesis, Genetic; Epigenomics; Gene Expression; Histone Code; Histones; Humans; Lysine; Male; Meiosis; Methylation; Mice; Protein Processing, Post-Translational; Sex Chromosomes; Spermatids; Spermatocytes; Spermatogenesis; Testis

2020
Chromatin architecture reorganization in murine somatic cell nuclear transfer embryos.
    Nature communications, 2020, 04-14, Volume: 11, Issue:1

    Topics: Animals; Cellular Reprogramming; Chromatin; Embryo, Mammalian; Embryonic Development; Enhancer Elements, Genetic; Gene Expression Regulation, Developmental; Genome; Histones; Lysine; Metaphase; Methylation; Mice; Nuclear Transfer Techniques; Promoter Regions, Genetic; Zygote

2020
EZH2-mediated H3K27me3 inhibits ACE2 expression.
    Biochemical and biophysical research communications, 2020, 06-11, Volume: 526, Issue:4

    Topics: Angiotensin-Converting Enzyme 2; Animals; Betacoronavirus; Coronavirus Infections; COVID-19; Embryonic Stem Cells; Enhancer of Zeste Homolog 2 Protein; Epigenesis, Genetic; Gene Expression Regulation; Gene Knockout Techniques; Histone Code; Histones; Humans; Lysine; Methylation; Mice; Organ Specificity; Pandemics; Peptidyl-Dipeptidase A; Pneumonia, Viral; Promoter Regions, Genetic; SARS-CoV-2; Transcription, Genetic; Up-Regulation

2020
X-Linked RNA-Binding Motif Protein Modulates HIV-1 Infection of CD4
    mBio, 2020, 04-21, Volume: 11, Issue:2

    Topics: CD4-Positive T-Lymphocytes; Gene Expression Regulation, Viral; Gene Knockdown Techniques; Heterogeneous-Nuclear Ribonucleoproteins; Histones; HIV Infections; HIV Long Terminal Repeat; HIV-1; Humans; Lysine; Methylation; Protein Binding; Proviruses; Transcription, Genetic

2020
Comparison of Molecular Recognition of Trimethyllysine and Trimethylthialysine by Epigenetic Reader Proteins.
    Molecules (Basel, Switzerland), 2020, Apr-21, Volume: 25, Issue:8

    Topics: Binding Sites; Cysteine; Epigenesis, Genetic; Histones; Humans; Lysine; Methylation; Models, Molecular; Molecular Conformation; Protein Binding; Solid-Phase Synthesis Techniques; Structure-Activity Relationship; Thermodynamics

2020
The Set1 N-terminal domain and Swd2 interact with RNA polymerase II CTD to recruit COMPASS.
    Nature communications, 2020, 05-01, Volume: 11, Issue:1

    Topics: Chromatin; Chromatin Immunoprecipitation Sequencing; Histone-Lysine N-Methyltransferase; Histones; Lysine; Methylation; Point Mutation; Protein Binding; Protein Domains; Protein Processing, Post-Translational; RNA Polymerase II; RNA-Binding Proteins; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins; Ubiquitination

2020
Radiation Induces Autophagy
    Anticancer research, 2020, Volume: 40, Issue:5

    Topics: Adaptor Proteins, Signal Transducing; Autophagy; Biomarkers, Tumor; Carcinoma, Non-Small-Cell Lung; Cell Line, Tumor; Epigenesis, Genetic; Histones; Humans; Lung Neoplasms; Lysine; Methylation; Microtubule-Associated Proteins; RNA, Small Interfering

2020
LncRNA CANT1 suppresses retinoblastoma progression by repellinghistone methyltransferase in PI3Kγ promoter.
    Cell death & disease, 2020, 05-04, Volume: 11, Issue:5

    Topics: Carcinogenesis; Cell Line; Class Ib Phosphatidylinositol 3-Kinase; Disease Progression; Down-Regulation; Gene Expression Regulation, Neoplastic; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation; Promoter Regions, Genetic; Protein Binding; Proto-Oncogene Proteins c-akt; Retinoblastoma; RNA, Long Noncoding; Signal Transduction; Transcription, Genetic

2020
Uncoupling histone H3K4 trimethylation from developmental gene expression via an equilibrium of COMPASS, Polycomb and DNA methylation.
    Nature genetics, 2020, Volume: 52, Issue:6

    Topics: Animals; Chromosomal Proteins, Non-Histone; Clustered Regularly Interspaced Short Palindromic Repeats; DNA Methylation; Gene Expression Regulation, Developmental; Gene Knockdown Techniques; Histone-Lysine N-Methyltransferase; Histones; Lysine; Methylation; Mice; Mice, Transgenic; Mouse Embryonic Stem Cells; Myeloid-Lymphoid Leukemia Protein; Polycomb-Group Proteins; Promoter Regions, Genetic; Trans-Activators

2020
MMTR/Dmap1 Sets the Stage for Early Lineage Commitment of Embryonic Stem Cells by Crosstalk with PcG Proteins.
    Cells, 2020, 05-11, Volume: 9, Issue:5

    Topics: Animals; Cell Differentiation; Cell Lineage; Chromatin Assembly and Disassembly; DNA Helicases; DNA-Binding Proteins; HEK293 Cells; Histones; Humans; Lysine; Lysine Acetyltransferase 5; Methylation; Mice; Mice, SCID; Models, Biological; Mouse Embryonic Stem Cells; Polycomb Repressive Complex 2; Polycomb-Group Proteins; Promoter Regions, Genetic; Protein Binding; Repressor Proteins; Trans-Activators

2020
Binding and allosteric transmission of histone H3 Lys-4 trimethylation to the recombinase RAG-1 are separable functions of the RAG-2 plant homeodomain finger.
    The Journal of biological chemistry, 2020, 07-03, Volume: 295, Issue:27

    Topics: Allosteric Regulation; Animals; Binding Sites; Chromatin; DNA-Binding Proteins; Histones; Homeodomain Proteins; Lysine; Methylation; Mice; Phylogeny; Protein Binding; Recombinases; Sharks; Substrate Specificity; V(D)J Recombination; VDJ Recombinases

2020
Splicing- and demethylase-independent functions of LSD1 in zebrafish primitive hematopoiesis.
    Scientific reports, 2020, 05-22, Volume: 10, Issue:1

    Topics: Amino Acid Sequence; Animals; Cells, Cultured; Embryo, Nonmammalian; Hematopoiesis; Histone Demethylases; Humans; Lysine; Methylation; Mutation; Protein Isoforms; RNA Splicing; Sequence Homology; Zebrafish; Zebrafish Proteins

2020
Structural Basis for the Binding Selectivity of Human CDY Chromodomains.
    Cell chemical biology, 2020, 07-16, Volume: 27, Issue:7

    Topics: Amino Acid Motifs; Animals; Binding Sites; Histones; Humans; Lysine; Methylation; Mice; Mice, Inbred ICR; Molecular Dynamics Simulation; Neurons; Nuclear Proteins; Peptidomimetics; Protein Binding; Protein Domains; Protein Subunits

2020
H3K36 dimethylation by MMSET promotes classical non-homologous end-joining at unprotected telomeres.
    Oncogene, 2020, Volume: 39, Issue:25

    Topics: Animals; Cells, Cultured; DNA Breaks, Double-Stranded; DNA End-Joining Repair; Embryo, Mammalian; Fibroblasts; HEK293 Cells; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation; Mice, Knockout; Repressor Proteins; RNA Interference; Telomere

2020
Host-Guest Protein Assembly for Affinity Purification of Methyllysine Proteomes.
    Analytical chemistry, 2020, 07-07, Volume: 92, Issue:13

    Topics: Amantadine; Bridged-Ring Compounds; Chromatography, Affinity; Chromobox Protein Homolog 5; Chromosomal Proteins, Non-Histone; HeLa Cells; Humans; Imidazoles; Lysine; Methylation; Neoplasms; Peptides

2020
Global analysis of histone modifications and long-range chromatin interactions revealed the differential cistrome changes and novel transcriptional players in human dilated cardiomyopathy.
    Journal of molecular and cellular cardiology, 2020, Volume: 145

    Topics: Base Sequence; Cardiomyopathy, Dilated; Chromatin; DNA-Binding Proteins; Enhancer Elements, Genetic; Epigenesis, Genetic; Gene Ontology; Genome, Human; Heart Failure; Heart Ventricles; Histones; Humans; Lysine; Male; Methylation; Muscle Proteins; Nucleotide Motifs; Promoter Regions, Genetic; Protein Processing, Post-Translational; Transcription Factors

2020
High methylation levels of histone H3 lysine 9 associated with activation of hypoxia-inducible factor 1α (HIF-1α) predict patients' worse prognosis in human hepatocellular carcinomas.
    Cancer genetics, 2020, Volume: 245

    Topics: Carcinoma, Hepatocellular; Cell Nucleus; Gene Expression Regulation, Neoplastic; Histones; Humans; Hypoxia-Inducible Factor 1, alpha Subunit; Liver Neoplasms; Lysine; Methylation; Prognosis; Retrospective Studies; Survival Analysis; Tissue Array Analysis; Up-Regulation

2020
The lncRNA LAMP5-AS1 drives leukemia cell stemness by directly modulating DOT1L methyltransferase activity in MLL leukemia.
    Journal of hematology & oncology, 2020, 06-17, Volume: 13, Issue:1

    Topics: Animals; Cell Self Renewal; Child, Preschool; Female; Gene Expression Regulation, Leukemic; Genetic Vectors; Heterografts; Histone-Lysine N-Methyltransferase; Histones; Homeodomain Proteins; Humans; Infant; Leukemia, Myeloid, Acute; Lysine; Lysosomal Membrane Proteins; Male; Methylation; Mice; Mice, Inbred NOD; Mice, SCID; Myeloid-Lymphoid Leukemia Protein; Neoplastic Stem Cells; Oncogene Proteins, Fusion; Precursor B-Cell Lymphoblastic Leukemia-Lymphoma; Primary Cell Culture; Protein Processing, Post-Translational; Recombinant Fusion Proteins; RNA Interference; RNA, Antisense; RNA, Messenger; RNA, Neoplasm; RNA, Small Interfering; Specific Pathogen-Free Organisms; Tumor Cells, Cultured; Tumor Stem Cell Assay

2020
Nucleosome Binding by the Lysine Specific Demethylase 1 (LSD1) Enzyme Enables Histone H3 Demethylation.
    Biochemistry, 2020, 07-14, Volume: 59, Issue:27

    Topics: Histone Demethylases; Histones; Humans; Lysine; Methylation; Models, Molecular; Nucleosomes; Protein Binding; Protein Processing, Post-Translational

2020
NeuroD1 Dictates Tumor Cell Differentiation in Medulloblastoma.
    Cell reports, 2020, 06-23, Volume: 31, Issue:12

    Topics: Animals; Basic Helix-Loop-Helix Transcription Factors; Carcinogenesis; Cell Differentiation; Cell Line, Tumor; Cell Proliferation; Cerebellar Neoplasms; Enhancer of Zeste Homolog 2 Protein; Hedgehog Proteins; Histones; Humans; Lysine; Medulloblastoma; Methylation; Mice; Nerve Tissue Proteins; Neurons; Patched-1 Receptor; Signal Transduction; Single-Cell Analysis

2020
Methyltransferase-like 21C (METTL21C) methylates alanine tRNA synthetase at Lys-943 in muscle tissue.
    The Journal of biological chemistry, 2020, 08-14, Volume: 295, Issue:33

    Topics: Animals; HEK293 Cells; Humans; Lysine; Methylation; Methyltransferases; Mice; Models, Molecular; Muscle, Skeletal; Muscles

2020
Dietary glutamine supplementation suppresses epigenetically-activated oncogenic pathways to inhibit melanoma tumour growth.
    Nature communications, 2020, 07-03, Volume: 11, Issue:1

    Topics: Animals; Cell Line, Tumor; Cell Proliferation; Dietary Supplements; Epigenesis, Genetic; Glutamine; Histones; Humans; Lysine; Male; Melanoma; Methylation; Mice, Nude; Signal Transduction; Transcriptome; Xenograft Model Antitumor Assays

2020
MicroRNA-200a Inhibits Inflammation and Atherosclerotic Lesion Formation by Disrupting EZH2-Mediated Methylation of STAT3.
    Frontiers in immunology, 2020, Volume: 11

    Topics: Animals; Apoptosis; Atherosclerosis; Cells, Cultured; Disease Models, Animal; Enhancer of Zeste Homolog 2 Protein; Human Umbilical Vein Endothelial Cells; Humans; Inflammation; Lipoproteins, LDL; Lysine; Male; Methylation; Mice, Knockout, ApoE; MicroRNAs; Phosphorylation; Plaque, Atherosclerotic; Signal Transduction; STAT3 Transcription Factor

2020
Proteome-wide Prediction of Lysine Methylation Leads to Identification of H2BK43 Methylation and Outlines the Potential Methyllysine Proteome.
    Cell reports, 2020, 07-14, Volume: 32, Issue:2

    Topics: Algorithms; Amino Acid Sequence; Animals; Cell Differentiation; Demethylation; Female; Histones; Humans; Jumonji Domain-Containing Histone Demethylases; Lysine; MCF-7 Cells; Methylation; Mice; Mouse Embryonic Stem Cells; Neurons; Nuclear Proteins; Proteome; Repressor Proteins; Software; Substrate Specificity

2020
Direct readout of heterochromatic H3K9me3 regulates DNMT1-mediated maintenance DNA methylation.
    Proceedings of the National Academy of Sciences of the United States of America, 2020, 08-04, Volume: 117, Issue:31

    Topics: DNA (Cytosine-5-)-Methyltransferase 1; DNA Methylation; Heterochromatin; Histones; Humans; Lysine; Methylation; Protein Processing, Post-Translational

2020
UTX Regulates Human Neural Differentiation and Dendritic Morphology by Resolving Bivalent Promoters.
    Stem cell reports, 2020, 08-11, Volume: 15, Issue:2

    Topics: Base Sequence; Cell Differentiation; Cell Line; Cell Lineage; Cell Self Renewal; Dendrites; Electrophysiological Phenomena; Histone Demethylases; Histones; Human Embryonic Stem Cells; Humans; Lysine; Methylation; Neurites; Promoter Regions, Genetic; Transcription, Genetic; Up-Regulation

2020
Loss of histone H3 trimethylation on lysine 27 and nuclear expression of transducin-like enhancer 1 in primary intracranial sarcoma, DICER1-mutant.
    Histopathology, 2021, Volume: 78, Issue:2

    Topics: Adolescent; Aged; Biomarkers, Tumor; Brain Neoplasms; Child; DEAD-box RNA Helicases; Female; High-Throughput Nucleotide Sequencing; Histones; Humans; Immunohistochemistry; Infant; Lysine; Male; Methylation; Mutation; Ribonuclease III; Sarcoma; Transducin

2021
Phase separation of Arabidopsis EMB1579 controls transcription, mRNA splicing, and development.
    PLoS biology, 2020, Volume: 18, Issue:7

    Topics: Arabidopsis; Arabidopsis Proteins; Calcium-Binding Proteins; Cell Nucleus; Flowers; Histones; Loss of Function Mutation; Lysine; Methylation; Nuclear Proteins; Phenotype; Plant Development; Plant Roots; Protein Binding; Repetitive Sequences, Amino Acid; RNA Splicing; RNA, Messenger; Transcription, Genetic

2020
Crystal Structure of MLL2 Complex Guides the Identification of a Methylation Site on P53 Catalyzed by KMT2 Family Methyltransferases.
    Structure (London, England : 1993), 2020, 10-06, Volume: 28, Issue:10

    Topics: Catalysis; Catalytic Domain; Crystallography, X-Ray; DNA-Binding Proteins; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation; Multiprotein Complexes; Neoplasm Proteins; Nuclear Proteins; Protein Domains; Substrate Specificity; Transcription Factors; Tumor Suppressor Protein p53

2020
Upregulation of histone H3K9 methylation in fetal endothelial cells from preeclamptic pregnancies.
    Journal of cellular physiology, 2021, Volume: 236, Issue:3

    Topics: Adult; Cell Hypoxia; Down-Regulation; Endothelial Cells; Female; Fetus; Histocompatibility Antigens; Histone-Lysine N-Methyltransferase; Histones; Human Umbilical Vein Endothelial Cells; Humans; Lysine; Methylation; Nitric Oxide Synthase Type III; Oxidative Stress; Placenta; Pre-Eclampsia; Pregnancy; Superoxide Dismutase; Up-Regulation

2021
Living under Strain: How Epithelia Protect Their Genomes from Repeated Stretching.
    Biochemistry, 2020, 08-04, Volume: 59, Issue:30

    Topics: Animals; Cellular Microenvironment; DNA; DNA Damage; Epithelium; Extracellular Matrix; Genome; Genomic Instability; Histones; Humans; Lysine; Methylation; Stem Cells; Stress, Mechanical

2020
Histone Methylation: Achilles Heel and Powerful Mediator of Periodontal Homeostasis.
    Journal of dental research, 2020, Volume: 99, Issue:12

    Topics: DNA Methylation; Epigenesis, Genetic; Histones; Homeostasis; Lysine; Methylation; Protein Processing, Post-Translational

2020
Integrated Metabolic and Epigenomic Reprograming by H3K27M Mutations in Diffuse Intrinsic Pontine Gliomas.
    Cancer cell, 2020, 09-14, Volume: 38, Issue:3

    Topics: Animals; Brain Stem Neoplasms; Cell Line, Tumor; Diffuse Intrinsic Pontine Glioma; Epigenomics; Gene Expression Regulation, Neoplastic; Glycolysis; Histones; Humans; Lysine; Methylation; Mice, Inbred NOD; Mice, Knockout; Mice, Nude; Mice, SCID; Mutation; Transplantation, Heterologous

2020
Focal Adhesion Kinase (FAK) Over-Expression and Prognostic Implication in Pediatric Hepatocellular Carcinoma.
    International journal of molecular sciences, 2020, Aug-12, Volume: 21, Issue:16

    Topics: beta Catenin; Carcinoma, Hepatocellular; Cell Nucleus; Child; Enhancer of Zeste Homolog 2 Protein; Female; Focal Adhesion Protein-Tyrosine Kinases; Gene Expression Regulation, Neoplastic; Histones; Humans; Liver Cirrhosis; Liver Neoplasms; Lysine; Male; Methylation; Phosphorylation; Phosphotyrosine; Prognosis; Proliferating Cell Nuclear Antigen; Tumor Burden; Up-Regulation

2020
Long noncoding RNA Hotair facilitates retinal endothelial cell dysfunction in diabetic retinopathy.
    Clinical science (London, England : 1979), 2020, 09-18, Volume: 134, Issue:17

    Topics: Animals; Antigens, CD; Cadherins; Diabetic Retinopathy; Endothelial Cells; Gene Expression Regulation; Gene Knockdown Techniques; Glucose; Histone Demethylases; Histones; Hypoxia-Inducible Factor 1, alpha Subunit; Lysine; Male; Methylation; Mice, Inbred C57BL; Promoter Regions, Genetic; Retina; Retinal Vessels; RNA, Long Noncoding; Vascular Endothelial Growth Factor A

2020
E6 hijacks KDM5C/lnc_000231/miR-497-5p/CCNE1 axis to promote cervical cancer progression.
    Journal of cellular and molecular medicine, 2020, Volume: 24, Issue:19

    Topics: Acetylation; Animals; Base Sequence; Carcinogenesis; Cell Cycle; Cell Line, Tumor; Cell Proliferation; Cyclin E; Disease Progression; Down-Regulation; Female; Gene Expression Regulation, Neoplastic; Histone Demethylases; Histones; Humans; Lysine; Methylation; Mice, Inbred BALB C; Mice, Nude; MicroRNAs; Oncogene Proteins; Oncogene Proteins, Viral; Promoter Regions, Genetic; Protein Stability; RNA, Long Noncoding; Tumor Stem Cell Assay; Up-Regulation; Uterine Cervical Neoplasms

2020
Estrogen Induces Selective Transcription of Caveolin1 Variants in Human Breast Cancer through Estrogen Responsive Element-Dependent Mechanisms.
    International journal of molecular sciences, 2020, Aug-20, Volume: 21, Issue:17

    Topics: Adult; Aged; Breast Neoplasms; Caveolin 1; Cell Line, Tumor; Estradiol; Female; Gene Expression Regulation, Neoplastic; Histones; Humans; Lysine; Methylation; Middle Aged; Receptors, Estrogen; Response Elements

2020
The catalytic domain of the histone methyltransferase NSD2/MMSET is required for the generation of B1 cells in mice.
    FEBS letters, 2020, Volume: 594, Issue:20

    Topics: Animals; Animals, Newborn; B-Lymphocytes; Catalytic Domain; Germinal Center; Histone-Lysine N-Methyltransferase; Histones; Immunity, Humoral; Immunoglobulin Class Switching; Lysine; Methylation; Mice, Inbred C57BL; Structure-Activity Relationship; Survival Analysis

2020
Somatic mutations in colorectal cancer are associated with the epigenetic modifications.
    Journal of cellular and molecular medicine, 2020, Volume: 24, Issue:20

    Topics: Base Pairing; Base Sequence; Binding Sites; CCCTC-Binding Factor; Chromatin; Colorectal Neoplasms; CpG Islands; DNA Methylation; Enhancer Elements, Genetic; Epigenesis, Genetic; Genome, Human; HCT116 Cells; Histones; Humans; Lysine; Methylation; MicroRNAs; Mutation

2020
H3K4 Methylation Status and Lysine Specific Methyltransferase KMT2C Expression Correlate with Prognosis in Lung Adenocarcinoma.
    Current molecular pharmacology, 2021, Volume: 14, Issue:6

    Topics: Adenocarcinoma of Lung; DNA-Binding Proteins; Female; Histones; Humans; Lung Neoplasms; Lysine; Methylation; Methyltransferases; Prognosis

2021
The long non-coding RNA SNHG1 promotes bladder cancer progression by interacting with miR-143-3p and EZH2.
    Journal of cellular and molecular medicine, 2020, Volume: 24, Issue:20

    Topics: Animals; Antigens, CD; Base Sequence; Cadherins; Carcinogenesis; Cell Line, Tumor; Cell Movement; Cell Nucleus; Cell Proliferation; Cytoplasm; Disease Progression; Enhancer of Zeste Homolog 2 Protein; Epigenesis, Genetic; Female; Gene Expression Regulation, Neoplastic; Gene Silencing; Hexokinase; Histones; Humans; Lysine; Male; Methylation; Mice, Inbred BALB C; Mice, Nude; MicroRNAs; Middle Aged; Models, Biological; Neoplasm Invasiveness; Neoplasm Metastasis; RNA, Long Noncoding; Transcription, Genetic; Up-Regulation; Urinary Bladder Neoplasms

2020
PRC2 Acts as a Critical Timer That Drives Oligodendrocyte Fate over Astrocyte Identity by Repressing the Notch Pathway.
    Cell reports, 2020, 09-15, Volume: 32, Issue:11

    Topics: Animals; Astrocytes; Cell Differentiation; Cell Lineage; Chickens; Enhancer of Zeste Homolog 2 Protein; Histones; Lysine; Methylation; Mice; Myelin Sheath; NFI Transcription Factors; Oligodendroglia; Polycomb Repressive Complex 2; Receptors, Notch; Signal Transduction; Spinal Cord; Stem Cells; Wnt Signaling Pathway

2020
Sequence specificity analysis of the SETD2 protein lysine methyltransferase and discovery of a SETD2 super-substrate.
    Communications biology, 2020, 09-16, Volume: 3, Issue:1

    Topics: Amino Acid Sequence; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation; Mutation; Peptides; Protein Processing, Post-Translational; Substrate Specificity

2020
The Huntingtin-interacting protein SETD2/HYPB is an actin lysine methyltransferase.
    Science advances, 2020, Volume: 6, Issue:40

    Topics: Actins; Cytoskeleton; GTP-Binding Proteins; Histone-Lysine N-Methyltransferase; Lysine; Methylation; Protein Processing, Post-Translational

2020
TASOR is a pseudo-PARP that directs HUSH complex assembly and epigenetic transposon control.
    Nature communications, 2020, 10-02, Volume: 11, Issue:1

    Topics: Amino Acid Sequence; Antigens, Neoplasm; Binding Sites; DNA Transposable Elements; Epigenesis, Genetic; Exons; Genome; HEK293 Cells; HeLa Cells; Histones; Humans; Lysine; Magnetic Resonance Spectroscopy; Methylation; Multiprotein Complexes; NAD; Nuclear Proteins; Phosphoproteins; Poly(ADP-ribose) Polymerases; Protein Binding; Protein Domains; RNA; RNA Processing, Post-Transcriptional; Transcription, Genetic

2020
Novel Formaldehyde-Induced Modifications of Lysine Residue Pairs in Peptides and Proteins: Identification and Relevance to Vaccine Development.
    Molecular pharmaceutics, 2020, 11-02, Volume: 17, Issue:11

    Topics: Aldehydes; Chromatography, High Pressure Liquid; Cross-Linking Reagents; Cytochromes c; Deamination; Formaldehyde; Kinetics; Lysine; Magnetic Resonance Spectroscopy; Mass Spectrometry; Methylation; Molecular Structure; Peptides; Vaccines, Inactivated

2020
An optogenetic switch for the Set2 methyltransferase provides evidence for transcription-dependent and -independent dynamics of H3K36 methylation.
    Genome research, 2020, Volume: 30, Issue:11

    Topics: Genome, Fungal; Histone Code; Histone Demethylases; Histones; Lysine; Methylation; Methyltransferases; Models, Statistical; Optogenetics; Repressor Proteins; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins; Transcription, Genetic

2020
SUV39H1 regulates the progression of MLL-AF9-induced acute myeloid leukemia.
    Oncogene, 2020, Volume: 39, Issue:50

    Topics: Animals; Apoptosis; Cell Line, Tumor; Cell Transformation, Neoplastic; Disease Progression; Female; Gene Expression Regulation, Neoplastic; Hematopoietic Stem Cells; Histones; Humans; Leukemia, Myeloid, Acute; Lysine; Methylation; Methyltransferases; Mice; Myeloid-Lymphoid Leukemia Protein; Oncogene Proteins, Fusion; Repressor Proteins; Transcription, Genetic

2020
SETDB1 mediated histone H3 lysine 9 methylation suppresses MLL-fusion target expression and leukemic transformation.
    Haematologica, 2020, 09-01, Volume: 105, Issue:9

    Topics: Animals; Histone-Lysine N-Methyltransferase; Histones; Homeodomain Proteins; Humans; Leukemia, Myeloid, Acute; Lysine; Methylation; Mice; Myeloid-Lymphoid Leukemia Protein; Oncogene Proteins, Fusion

2020
Histone H3.3 G34 mutations promote aberrant PRC2 activity and drive tumor progression.
    Proceedings of the National Academy of Sciences of the United States of America, 2020, 11-03, Volume: 117, Issue:44

    Topics: Chromatin; Gene Expression; Gene Expression Regulation; Glioma; HEK293 Cells; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Mesenchymal Stem Cells; Methylation; Mutation; Neoplastic Processes; Polycomb Repressive Complex 1; Polycomb Repressive Complex 2; Protein Processing, Post-Translational

2020
Sperm histone H3 lysine 4 trimethylation is altered in a genetic mouse model of transgenerational epigenetic inheritance.
    Nucleic acids research, 2020, 11-18, Volume: 48, Issue:20

    Topics: Animals; Cellular Reprogramming; Chromatin; Chromatin Immunoprecipitation Sequencing; Embryo, Mammalian; Epigenesis, Genetic; Gene Ontology; Genetic Loci; Histone Demethylases; Histones; Lysine; Male; Methylation; Mice; Mice, Inbred C57BL; Mice, Transgenic; Phenotype; Promoter Regions, Genetic; Spermatocytes; Spermatogenesis; Spermatozoa

2020
DOT1L-controlled cell-fate determination and transcription elongation are independent of H3K79 methylation.
    Proceedings of the National Academy of Sciences of the United States of America, 2020, 11-03, Volume: 117, Issue:44

    Topics: Cell Differentiation; Cell Proliferation; DNA Methylation; Embryonic Stem Cells; Epigenesis, Genetic; Epigenomics; Gene Expression Regulation; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation; Methyltransferases; Neural Stem Cells; Protein Processing, Post-Translational; Transcription Elongation, Genetic; Transcriptional Elongation Factors

2020
The histone and non-histone methyllysine reader activities of the UHRF1 tandem Tudor domain are dispensable for the propagation of aberrant DNA methylation patterning in cancer cells.
    Epigenetics & chromatin, 2020, 10-23, Volume: 13, Issue:1

    Topics: CCAAT-Enhancer-Binding Proteins; DNA Methylation; Epigenesis, Genetic; Gene Expression Regulation, Neoplastic; HCT116 Cells; HeLa Cells; Histone Code; Histones; Humans; Lysine; Methylation; Protein Processing, Post-Translational; Tudor Domain; Ubiquitin-Protein Ligases

2020
JARID1B promotes colorectal cancer proliferation and Wnt/β-catenin signaling via decreasing CDX2 level.
    Cell communication and signaling : CCS, 2020, 10-27, Volume: 18, Issue:1

    Topics: Animals; Carcinogenesis; CDX2 Transcription Factor; Cell Line, Tumor; Cell Proliferation; Colorectal Neoplasms; Disease Progression; Down-Regulation; Gene Expression Regulation, Neoplastic; Histones; Humans; Jumonji Domain-Containing Histone Demethylases; Lysine; Male; Methylation; Mice, Inbred BALB C; Mice, Nude; Middle Aged; Multivariate Analysis; Nuclear Proteins; Promoter Regions, Genetic; Repressor Proteins; Survival Analysis; Up-Regulation; Wnt Signaling Pathway

2020
Broad genic repression domains signify enhanced silencing of oncogenes.
    Nature communications, 2020, 11-03, Volume: 11, Issue:1

    Topics: Breast Neoplasms; CD4-Positive T-Lymphocytes; Cell Line, Tumor; Cell Movement; Cell Proliferation; Chromatin; Conserved Sequence; Female; Gene Expression Regulation, Neoplastic; Gene Silencing; Histones; Humans; Lysine; Methylation; Nucleotide Motifs; Oncogenes; Regulatory Sequences, Nucleic Acid; RNA, Long Noncoding; Transcription Elongation, Genetic; Transcription Initiation, Genetic

2020
Metabolic Reprogramming Induces Germinal Center B Cell Differentiation through Bcl6 Locus Remodeling.
    Cell reports, 2020, 11-03, Volume: 33, Issue:5

    Topics: Animals; B-Lymphocytes; Cell Differentiation; Citric Acid Cycle; Enhancer Elements, Genetic; Epigenesis, Genetic; Genetic Loci; Germinal Center; Histone Demethylases; Histones; Humans; Interleukin-4; Ketoglutaric Acids; Lysine; Metabolome; Metabolomics; Methylation; Mice, Inbred C57BL; Mitochondria; Oxidation-Reduction; Proto-Oncogene Proteins c-bcl-6; Signal Transduction; STAT6 Transcription Factor; Transcription, Genetic

2020
Residues flanking the ARK
    Biochimica et biophysica acta. General subjects, 2021, Volume: 1865, Issue:1

    Topics: Amino Acid Sequence; Chromobox Protein Homolog 5; Chromosomal Proteins, Non-Histone; Histocompatibility Antigens; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation; Molecular Dynamics Simulation; Protein Binding; Protein Interaction Domains and Motifs; Protein Processing, Post-Translational

2021
Highly Efficient Separation of Methylated Peptides Utilizing Selective Complexation between Lysine and 18-Crown-6.
    Analytical chemistry, 2020, 12-01, Volume: 92, Issue:23

    Topics: Animals; Cattle; Crown Ethers; Lysine; Methylation; Peptides; Proteolysis; Serum Albumin, Bovine; Trypsin

2020
H3K27M in Gliomas Causes a One-Step Decrease in H3K27 Methylation and Reduced Spreading within the Constraints of H3K36 Methylation.
    Cell reports, 2020, 11-17, Volume: 33, Issue:7

    Topics: Cell Line, Tumor; Chromatin; DNA Methylation; Epigenomics; Gene Expression; Gene Expression Regulation, Neoplastic; Glioma; Histones; Humans; Lysine; Methionine; Methylation; Mutation; Polycomb Repressive Complex 2; Protein Processing, Post-Translational

2020
Maternal DOT1L is dispensable for mouse development.
    Scientific reports, 2020, 11-26, Volume: 10, Issue:1

    Topics: Animals; Blastocyst; Cell Proliferation; Embryo, Mammalian; Embryonic Development; Histone Methyltransferases; Histone-Lysine N-Methyltransferase; Histones; Lysine; Methylation; Mice; Mice, Knockout; Mice, Transgenic; Models, Animal; Oocytes; Zygote

2020
Trans- and cis-acting effects of Firre on epigenetic features of the inactive X chromosome.
    Nature communications, 2020, 11-27, Volume: 11, Issue:1

    Topics: Alleles; Animals; Base Sequence; Cell Line; Cell Nucleus; Chromatin; DNA, Complementary; Epigenesis, Genetic; Female; Gene Deletion; Gene Ontology; Genetic Loci; Genome; Histones; Lysine; Male; Methylation; Mice, Inbred C57BL; Polycomb Repressive Complex 2; RNA, Long Noncoding; Transgenes; Up-Regulation; X Chromosome; X Chromosome Inactivation

2020
Epigenetic activation of a RAS/MYC axis in H3.3K27M-driven cancer.
    Nature communications, 2020, 12-04, Volume: 11, Issue:1

    Topics: Animals; Brain Neoplasms; Disease Models, Animal; Epigenesis, Genetic; Epigenomics; Gene Expression Profiling; Gene Expression Regulation, Neoplastic; Glioma; Histones; Humans; Lysine; Methylation; Mice, Knockout; Proto-Oncogene Proteins c-myc; ras Proteins; Tumor Suppressor Protein p53

2020
Coupling of H3K27me3 recognition with transcriptional repression through the BAH-PHD-CPL2 complex in Arabidopsis.
    Nature communications, 2020, 12-04, Volume: 11, Issue:1

    Topics: Arabidopsis; Arabidopsis Proteins; Epigenesis, Genetic; Flowers; Gene Expression Regulation, Developmental; Gene Expression Regulation, Plant; Histone Code; Histones; Lysine; Methylation; Models, Molecular; Multiprotein Complexes; Phosphoprotein Phosphatases; Protein Conformation; Time Factors

2020
Fine-tuning of lysine side chain modulates the activity of histone lysine methyltransferases.
    Scientific reports, 2020, 12-09, Volume: 10, Issue:1

    Topics: Histone-Lysine N-Methyltransferase; Humans; Lysine; Methylation; Protein Conformation

2020
Predictive QM/MM Modeling of Modulations in Protein-Protein Binding by Lysine Methylation.
    Journal of molecular biology, 2021, 02-05, Volume: 433, Issue:3

    Topics: Binding Sites; Carrier Proteins; Hydrogen Bonding; Lysine; Methylation; Molecular Docking Simulation; Molecular Dynamics Simulation; Protein Binding; Proteins; Solvents; Structure-Activity Relationship

2021
Long noncoding RNA ATB promotes ovarian cancer tumorigenesis by mediating histone H3 lysine 27 trimethylation through binding to EZH2.
    Journal of cellular and molecular medicine, 2021, Volume: 25, Issue:1

    Topics: Carcinogenesis; Cell Line, Tumor; Cell Movement; Cell Proliferation; Enhancer of Zeste Homolog 2 Protein; Female; Gene Expression Regulation, Neoplastic; Gene Silencing; Histones; Humans; Lysine; Methylation; Models, Biological; Neoplasm Invasiveness; Ovarian Neoplasms; Protein Binding; RNA, Long Noncoding; Treatment Outcome

2021
Selective Triazenation Reaction (STaR) of Secondary Amines for Tagging Monomethyl Lysine Post-Translational Modifications.
    Angewandte Chemie (International ed. in English), 2021, 03-22, Volume: 60, Issue:13

    Topics: Amines; Lysine; Methylation; Molecular Structure; Peptides; Protein Processing, Post-Translational

2021
FBXO44 promotes DNA replication-coupled repetitive element silencing in cancer cells.
    Cell, 2021, 01-21, Volume: 184, Issue:2

    Topics: Adult; Cell Line, Tumor; Cell Proliferation; Cell Survival; DNA Breaks, Double-Stranded; DNA Replication; Drug Resistance, Neoplasm; F-Box Proteins; Female; Gene Expression Regulation, Neoplastic; Histones; Humans; Immune Checkpoint Inhibitors; Immunity; Interferons; Lysine; Male; Methylation; Middle Aged; Neoplasm Proteins; Neoplasms; Nucleosomes; Repetitive Sequences, Nucleic Acid; Signal Transduction; Transcription, Genetic; Treatment Outcome

2021
Using Machine Learning and Targeted Mass Spectrometry to Explore the Methyl-Lys Proteome.
    STAR protocols, 2020, 12-18, Volume: 1, Issue:3

    Topics: Algorithms; Forecasting; Humans; Lysine; Machine Learning; Mass Spectrometry; Methylation; Protein Processing, Post-Translational; Proteome; Sequence Analysis, Protein; Software

2020
Histone H3Q5 serotonylation stabilizes H3K4 methylation and potentiates its readout.
    Proceedings of the National Academy of Sciences of the United States of America, 2021, 02-09, Volume: 118, Issue:6

    Topics: Chromatin; Glutamine; Histones; Humans; Lysine; Methylation; Protein Binding; Protein Processing, Post-Translational; Serotonergic Neurons

2021
Histone modification dynamics at H3K27 are associated with altered transcription of in planta induced genes in Magnaporthe oryzae.
    PLoS genetics, 2021, Volume: 17, Issue:2

    Topics: Acetylation; Ascomycota; Gene Expression Regulation, Plant; Genomics; Histone Code; Histones; Host-Pathogen Interactions; Lysine; Methylation; Plants; RNA-Seq; Transcription, Genetic

2021
Histone modifications form a cell-type-specific chromosomal bar code that persists through the cell cycle.
    Scientific reports, 2021, 02-04, Volume: 11, Issue:1

    Topics: Acetylation; Cell Cycle; Chromatin; Chromosomes; Epigenesis, Genetic; HeLa Cells; Histone Code; Histones; Humans; Lysine; Methylation; Mitosis; Nucleosomes; Protein Processing, Post-Translational

2021
The Temporal Order of DNA Replication Shaped by Mammalian DNA Methyltransferases.
    Cells, 2021, 01-29, Volume: 10, Issue:2

    Topics: Animals; Chromosomes, Mammalian; DNA; DNA Methylation; DNA Replication Timing; Genome; Heterochromatin; Histones; Lysine; Mammals; Methylation; Methyltransferases; Mice; Mice, Knockout; Mouse Embryonic Stem Cells; Transcription, Genetic

2021
Depletion of H3K36me2 recapitulates epigenomic and phenotypic changes induced by the H3.3K36M oncohistone mutation.
    Proceedings of the National Academy of Sciences of the United States of America, 2021, 03-02, Volume: 118, Issue:9

    Topics: Animals; Antimetabolites, Antineoplastic; Carcinogenesis; Cell Line; Chromatin; CRISPR-Cas Systems; Cytarabine; Decitabine; Epigenesis, Genetic; Gene Editing; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Mesenchymal Stem Cells; Methylation; Mice; Mutation; Neoplasm Proteins; Neoplasms; Phenotype; Protein Isoforms; Protein Processing, Post-Translational; Repressor Proteins; Transcriptome

2021
Rice and Arabidopsis homologs of yeast CHROMOSOME TRANSMISSION FIDELITY PROTEIN 4 commonly interact with Polycomb complexes but exert divergent regulatory functions.
    The Plant cell, 2021, 07-02, Volume: 33, Issue:5

    Topics: Arabidopsis; Cell Nucleus; DNA Damage; DNA Polymerase I; DNA-Binding Proteins; Flowers; Histones; Lysine; Methylation; Mutation; Oryza; Phenotype; Plant Proteins; Polycomb-Group Proteins; Protein Binding; S Phase; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins; Sequence Homology, Amino Acid

2021
Lysines Acetylome and Methylome Profiling of H3 and H4 Histones in Trichostatin A-Treated Stem Cells.
    International journal of molecular sciences, 2021, Feb-19, Volume: 22, Issue:4

    Topics: Acetylation; Amino Acid Sequence; Animals; Dimethyl Sulfoxide; Embryonic Stem Cells; Gene Expression Regulation; Histones; Hydroxamic Acids; Lysine; Methylation; Mice; Octamer Transcription Factor-3; Peptides; Peroxiredoxins; Protein Processing, Post-Translational; Proteolysis

2021
Chemical Depletion of Histidine-Containing Peptides Allows Identification of More Low-Abundance Methylation Sites from Proteome Samples.
    Journal of proteome research, 2021, 05-07, Volume: 20, Issue:5

    Topics: Arginine; Histidine; Lysine; Methylation; Peptides; Protein Processing, Post-Translational; Proteome

2021
Full methylation of H3K27 by PRC2 is dispensable for initial embryoid body formation but required to maintain differentiated cell identity.
    Development (Cambridge, England), 2021, 04-01, Volume: 148, Issue:7

    Topics: Animals; Cell Differentiation; Cell Line; Embryoid Bodies; Embryonic Stem Cells; Enhancer of Zeste Homolog 2 Protein; Histones; Indazoles; Lysine; Methylation; Mice; Phenotype; Polycomb Repressive Complex 2; Protein Processing, Post-Translational; Pyridones; Transcriptome

2021
Methylation-dependent SUMOylation of the architectural transcription factor HMGA2.
    Biochemical and biophysical research communications, 2021, 05-07, Volume: 552

    Topics: Amino Acid Motifs; Amino Acid Sequence; Binding Sites; Cell Line; HMGA2 Protein; Humans; Lysine; Methylation; Protein Binding; Protein Domains; Sequence Homology, Amino Acid; Sumoylation; Transcription Factors; Ubiquitin-Conjugating Enzymes

2021
Tunable, division-independent control of gene activation timing by a polycomb switch.
    Cell reports, 2021, 03-23, Volume: 34, Issue:12

    Topics: Animals; Cell Division; Cell Lineage; Epigenesis, Genetic; Genetic Loci; Histones; Humans; Lysine; Methylation; Mice, Inbred C57BL; Polycomb-Group Proteins; Protein Conformation; Repressor Proteins; T-Lymphocytes; Time Factors; Transcription Factors; Transcriptional Activation; Tumor Suppressor Proteins

2021
H3.1K27me1 maintains transcriptional silencing and genome stability by preventing GCN5-mediated histone acetylation.
    The Plant cell, 2021, 05-31, Volume: 33, Issue:4

    Topics: Acetylation; Arabidopsis; Arabidopsis Proteins; Gene Silencing; Genome, Plant; Genomic Instability; Heterochromatin; Histone Acetyltransferases; Histones; Lysine; Methylation; Methyltransferases; Mutation; Plants, Genetically Modified; Transcription Factors

2021
Combinatorial Histone H3 Modifications Are Dynamically Altered in Distinct Cell Cycle Phases.
    Journal of the American Society for Mass Spectrometry, 2021, Jun-02, Volume: 32, Issue:6

    Topics: Cell Cycle; Chromatography, Reverse-Phase; HeLa Cells; Histones; Humans; Lysine; Methylation; Protein Processing, Post-Translational; Tandem Mass Spectrometry; Workflow

2021
Arginine and lysine methylation of MRPS23 promotes breast cancer metastasis through regulating OXPHOS.
    Oncogene, 2021, Volume: 40, Issue:20

    Topics: Arginine; Breast Neoplasms; Cell Line, Tumor; Cell Proliferation; Female; Humans; Lysine; Methylation; Mitochondria; Neoplasm Metastasis; Organoids; Oxidative Phosphorylation; Protein Methyltransferases; Protein Processing, Post-Translational; Protein-Arginine N-Methyltransferases

2021
Prenatal nicotine exposure leads to decreased histone H3 lysine 9 (H3K9) methylation and increased
    Journal of developmental origins of health and disease, 2022, Volume: 13, Issue:2

    Topics: Animals; Female; Histones; Lysine; Methylation; Nicotine; Pancreas; Pregnancy; Rats; Src Homology 2 Domain-Containing, Transforming Protein 1

2022
Dynamic methylation of histone H3K18 in differentiating Theileria parasites.
    Nature communications, 2021, 05-28, Volume: 12, Issue:1

    Topics: Acetylation; Animals; Cattle; Cell Line; Chickens; Chromatin Immunoprecipitation Sequencing; Epigenetic Repression; Gene Expression Regulation, Developmental; HEK293 Cells; Histones; Humans; Insect Proteins; Life Cycle Stages; Lysine; Methylation; Methyltransferases; Mutagenesis, Site-Directed; Peptides, Cyclic; Recombinant Proteins; RNA-Seq; Theileria; Theileriasis; Tranylcypromine

2021
A histone H3K4me1-specific binding protein is required for siRNA accumulation and DNA methylation at a subset of loci targeted by RNA-directed DNA methylation.
    Nature communications, 2021, 06-07, Volume: 12, Issue:1

    Topics: Arabidopsis; Arabidopsis Proteins; Chromatin; Chromatin Immunoprecipitation Sequencing; DNA Methylation; DNA-Directed RNA Polymerases; Gene Expression Regulation, Plant; Histones; Lysine; Methylation; Plants, Genetically Modified; Protein Binding; Protein Conformation; RNA Interference; RNA, Small Interfering; Whole Genome Sequencing

2021
The dynamic epigenetic regulation of the inactive X chromosome in healthy human B cells is dysregulated in lupus patients.
    Proceedings of the National Academy of Sciences of the United States of America, 2021, 06-15, Volume: 118, Issue:24

    Topics: Adolescent; Adult; Alleles; B-Lymphocytes; Child; Chromosomes, Human, X; Epigenesis, Genetic; Gene Expression Profiling; Heterochromatin; Histones; Humans; Lupus Erythematosus, Systemic; Lymphocyte Subsets; Lysine; Methylation; Middle Aged; RNA, Long Noncoding; Ubiquitin; X Chromosome Inactivation; Young Adult

2021
Heteromeric HSFA2/HSFA3 complexes drive transcriptional memory after heat stress in Arabidopsis.
    Nature communications, 2021, 06-08, Volume: 12, Issue:1

    Topics: Arabidopsis; Arabidopsis Proteins; Epistasis, Genetic; Gene Expression Regulation, Plant; Genes, Plant; Genetic Loci; Heat Shock Transcription Factors; Heat-Shock Response; Histones; Kinetics; Lysine; Methylation; Multiprotein Complexes; Plants, Genetically Modified; Promoter Regions, Genetic; Protein Binding; RNA, Messenger; Transcription, Genetic

2021
γ-Difluorolysine as a
    Chemical communications (Cambridge, England), 2021, Jul-08, Volume: 57, Issue:55

    Topics: Acetylation; Histone Acetyltransferases; Histone-Lysine N-Methyltransferase; Lysine; Magnetic Resonance Spectroscopy; Methylation

2021
Asymmetrical deposition and modification of histone H3 variants are essential for zygote development.
    Life science alliance, 2021, Volume: 4, Issue:8

    Topics: Animals; DNA Replication; Female; Gene Expression Regulation, Developmental; Histone Code; Histones; Lysine; Male; Methylation; Mice; Zygote

2021
Lysine methylation shields an intracellular pathogen from ubiquitylation and autophagy.
    Science advances, 2021, Volume: 7, Issue:26

    Topics: Animals; Autophagy; Lysine; Methylation; Mice; Ubiquitin; Ubiquitination

2021
Comparative distributions of RSBN1 and methylated histone H4 Lysine 20 in the mouse spermatogenesis.
    PloS one, 2021, Volume: 16, Issue:6

    Topics: Animals; Cell Differentiation; Cell Nucleus; Germ Cells; Histones; Homeodomain Proteins; Lysine; Male; Methylation; Mice; Seminal Plasma Proteins; Spermatogenesis; Testis

2021
A chromodomain protein mediates heterochromatin-directed piRNA expression.
    Proceedings of the National Academy of Sciences of the United States of America, 2021, 07-06, Volume: 118, Issue:27

    Topics: Animals; Caenorhabditis elegans; Caenorhabditis elegans Proteins; Chromatin Assembly and Disassembly; Genetic Testing; Germ Cells; Heterochromatin; Histones; Lysine; Methylation; Peptides; Polycomb Repressive Complex 2; Protein Binding; RNA, Small Interfering; Temperature

2021
The nuclear kinesin KIF18B promotes 53BP1-mediated DNA double-strand break repair.
    Cell reports, 2021, 06-29, Volume: 35, Issue:13

    Topics: Amino Acid Motifs; Amino Acid Sequence; Cell Line, Tumor; Cell Nucleus; DNA Breaks, Double-Stranded; HEK293 Cells; Histones; Humans; Kinesins; Lysine; Methylation; Protein Binding; Tumor Suppressor p53-Binding Protein 1

2021
SETD7-mediated monomethylation is enriched on soluble Tau in Alzheimer's disease.
    Molecular neurodegeneration, 2021, 07-02, Volume: 16, Issue:1

    Topics: Alzheimer Disease; Animals; Histone-Lysine N-Methyltransferase; Humans; Lysine; Methylation; Mice; Mice, Transgenic; Protein Processing, Post-Translational; tau Proteins

2021
Kdm3b haploinsufficiency impairs the consolidation of cerebellum-dependent motor memory in mice.
    Molecular brain, 2021, 07-03, Volume: 14, Issue:1

    Topics: Animals; Cerebellum; Gene Expression Regulation; Haploinsufficiency; Histones; Jumonji Domain-Containing Histone Demethylases; Lysine; Male; Memory Consolidation; Methylation; Mice, Inbred C57BL; Motor Activity

2021
α-TubK40me3 is required for neuronal polarization and migration by promoting microtubule formation.
    Nature communications, 2021, 07-05, Volume: 12, Issue:1

    Topics: Acetylation; Animals; Cell Movement; Cerebral Cortex; Cytokinesis; Gene Knockdown Techniques; Histone-Lysine N-Methyltransferase; Lysine; Methylation; Mice; Microtubules; Mitosis; Neurogenesis; Neurons; Paclitaxel; Protein Processing, Post-Translational; Tubulin

2021
Role of Dot1L and H3K79 methylation in regulating somatic hypermutation of immunoglobulin genes.
    Proceedings of the National Academy of Sciences of the United States of America, 2021, 07-20, Volume: 118, Issue:29

    Topics: Animals; B-Lymphocytes; Burkitt Lymphoma; Cell Line, Tumor; Histone-Lysine N-Methyltransferase; Histones; Humans; Immunoglobulin Class Switching; Immunoglobulin Constant Regions; Immunoglobulin Heavy Chains; Immunoglobulin Variable Region; Lysine; Methylation; Mice; Somatic Hypermutation, Immunoglobulin

2021
Lysine Demethylase 5A is Required for MYC Driven Transcription in Multiple Myeloma.
    Blood cancer discovery, 2021, Volume: 2, Issue:4

    Topics: Cyclin-Dependent Kinase 9; Cyclin-Dependent Kinase-Activating Kinase; Cyclin-Dependent Kinases; Genes, cdc; Humans; Lysine; Methylation; Multiple Myeloma; Proto-Oncogene Proteins c-myc; Retinoblastoma-Binding Protein 2; RNA Polymerase II

2021
Tubulin methylation of lysine 40 by SETD2: a new way to tune neuronal functions?
    Brain : a journal of neurology, 2021, 09-04, Volume: 144, Issue:8

    Topics: Histones; Humans; Lysine; Methylation; Protein Processing, Post-Translational; Tubulin

2021
Histone and DNA binding ability studies of the NSD subfamily of PWWP domains.
    Biochemical and biophysical research communications, 2021, 09-10, Volume: 569

    Topics: Amino Acid Sequence; Base Sequence; Binding Sites; Crystallography, X-Ray; DNA; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation; Models, Molecular; Nuclear Proteins; Nucleic Acid Conformation; Protein Binding; Protein Domains; Repressor Proteins; Sequence Homology, Amino Acid

2021
Complete loss of H3K9 methylation dissolves mouse heterochromatin organization.
    Nature communications, 2021, 07-16, Volume: 12, Issue:1

    Topics: Animals; Chromatin Immunoprecipitation Sequencing; Chromatography, Liquid; CRISPR-Cas Systems; Demethylation; Epigenesis, Genetic; Fibroblasts; Gene Deletion; Heterochromatin; Histone-Lysine N-Methyltransferase; Histones; In Situ Hybridization, Fluorescence; Lysine; Mass Spectrometry; Methylation; Mice; Microscopy, Electron, Transmission; Mutation; Protein Processing, Post-Translational; Repetitive Sequences, Nucleic Acid; Retroelements; RNA-Seq; Signal Transduction

2021
M33 condenses chromatin through nuclear body formation and methylation of both histone H3 lysine 9 and lysine 27.
    Biochimica et biophysica acta. Molecular cell research, 2021, Volume: 1868, Issue:11

    Topics: Cells, Cultured; Chromatin; Chromobox Protein Homolog 5; HEK293 Cells; Histones; Humans; Lysine; Methylation; Nuclear Proteins; Polycomb Repressive Complex 1

2021
The H3.3K27M oncohistone antagonizes reprogramming in Drosophila.
    PLoS genetics, 2021, Volume: 17, Issue:7

    Topics: Animals; Animals, Genetically Modified; Cell Proliferation; Chromatin; Drosophila melanogaster; Drosophila Proteins; Eye; Gene Expression Regulation, Developmental; Gene Expression Regulation, Neoplastic; Histones; Larva; Lysine; Methylation; Microtubule-Associated Proteins; Mutation; Nuclear Proteins; Polycomb Repressive Complex 2

2021
Histone mimics: more tales to read.
    The Biochemical journal, 2021, 07-30, Volume: 478, Issue:14

    Topics: Animals; Chromatin; Chromatin Assembly and Disassembly; DNA; Histones; Humans; Lysine; Methylation; Models, Biological; Protein Processing, Post-Translational

2021
SMYD3 promotes hepatocellular carcinoma progression by methylating S1PR1 promoters.
    Cell death & disease, 2021, 07-23, Volume: 12, Issue:8

    Topics: Apoptosis; Base Sequence; Carcinoma, Hepatocellular; Cell Cycle; Cell Line, Tumor; Cell Movement; Cell Proliferation; Disease Progression; Gene Expression Regulation, Neoplastic; HEK293 Cells; Histone-Lysine N-Methyltransferase; Histones; Humans; Liver Neoplasms; Lysine; Methylation; Neoplasm Invasiveness; Promoter Regions, Genetic; RNA, Messenger; Signal Transduction; Sphingosine-1-Phosphate Receptors; Tumor Stem Cell Assay

2021
Chromatin remodeler ARID1A binds IRF3 to selectively induce antiviral interferon production in macrophages.
    Cell death & disease, 2021, 07-27, Volume: 12, Issue:8

    Topics: Animals; Antiviral Agents; Chromatin; Chromatin Assembly and Disassembly; DNA-Binding Proteins; HEK293 Cells; Histone-Lysine N-Methyltransferase; Histones; Humans; Immunity, Innate; Interferon Regulatory Factor-3; Interferons; Lysine; Macrophages; Methylation; Mice; Promoter Regions, Genetic; Protein Binding; RAW 264.7 Cells; Transcription Factors; Vesiculovirus

2021
Preparation of the ubiquitination-triggered active form of SETDB1 in Escherichia coli for biochemical and structural analyses.
    Journal of biochemistry, 2021, Dec-28, Volume: 170, Issue:5

    Topics: Cell Line; Escherichia coli; Gene Silencing; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation; Protein Binding; Recombinant Proteins; Ubiquitination

2021
FANCI plays an essential role in spermatogenesis and regulates meiotic histone methylation.
    Cell death & disease, 2021, 08-09, Volume: 12, Issue:8

    Topics: Animals; Apoptosis; Cell Differentiation; Epigenesis, Genetic; Fanconi Anemia; Gene Deletion; Histones; Infertility, Male; Lysine; Male; Meiosis; Methylation; Mice; Organ Specificity; Prophase; Recombination, Genetic; RNA, Messenger; Sex Chromosomes; Spermatogenesis; Spermatogonia; Spermatozoa; Testis

2021
Alcohol-abuse drug disulfiram targets pediatric glioma via MLL degradation.
    Cell death & disease, 2021, 08-11, Volume: 12, Issue:8

    Topics: Alcoholism; Auranofin; Cell Line, Tumor; Cell Proliferation; Child; Disulfiram; Down-Regulation; Drug Repositioning; Drug Synergism; Gene Expression Regulation, Neoplastic; Glioma; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation; Myeloid-Lymphoid Leukemia Protein; Neoplasm Grading; Protein Processing, Post-Translational; Proteolysis; Transcription, Genetic

2021
Histone demethylase KDM4A plays an oncogenic role in nasopharyngeal carcinoma by promoting cell migration and invasion.
    Experimental & molecular medicine, 2021, Volume: 53, Issue:8

    Topics: Adult; Aged; Animals; Apoptosis; Carcinogenesis; Cell Line, Tumor; Cell Movement; Cell Proliferation; Female; Gene Expression Regulation, Neoplastic; Gene Silencing; Histones; Humans; Hypoxia-Inducible Factor 1, alpha Subunit; Jumonji Domain-Containing Histone Demethylases; Lysine; Male; Methylation; Mice, Nude; Middle Aged; Nasopharyngeal Carcinoma; Neoplasm Invasiveness; Signal Transduction; TOR Serine-Threonine Kinases; Transcription Factors; Up-Regulation; Young Adult

2021
A Peptidomimetic Ligand Targeting the Chromodomain of MPP8 Reveals HRP2's Association with the HUSH Complex.
    ACS chemical biology, 2021, 09-17, Volume: 16, Issue:9

    Topics: Cell Cycle Proteins; Fluorescence Resonance Energy Transfer; Histones; Hydrophobic and Hydrophilic Interactions; Intercellular Signaling Peptides and Proteins; Ligands; Lysine; Mass Spectrometry; Methylation; Models, Molecular; Peptidomimetics; Phosphoproteins; Protein Binding; Protein Domains; Protein Processing, Post-Translational; Proteomics; Structure-Activity Relationship

2021
Histone H4 lysine 20 mono-methylation directly facilitates chromatin openness and promotes transcription of housekeeping genes.
    Nature communications, 2021, 08-20, Volume: 12, Issue:1

    Topics: Amino Acid Sequence; Animals; Cell Cycle; Cell Line; Chromatin; Genes, Essential; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Magnetic Resonance Spectroscopy; Methylation; Mice; Models, Biological; Nucleosomes; Protein Conformation; Transcription, Genetic

2021
Glucose and TNF enhance expression of TNF and IL1B, and histone H3 acetylation and K4/K36 methylation, in juvenile macrophage cells.
    Gene, 2020, Volume: 763S

    Topics: Acetylation; Cell Line; Endothelial Cells; Gene Expression Regulation; Glucose; Histones; Humans; Interleukin-1beta; Lysine; Macrophages; Methylation; Protein Processing, Post-Translational; Tumor Necrosis Factor-alpha

2020
Malat-1-PRC2-EZH1 interaction supports adaptive oxidative stress dependent epigenome remodeling in skeletal myotubes.
    Cell death & disease, 2021, 09-16, Volume: 12, Issue:10

    Topics: Animals; Cell Line; Ectoderm; Embryo, Mammalian; Epigenome; Gene Expression Regulation; Gene Silencing; Histones; Lysine; Methylation; Mice; Models, Biological; Muscle Fibers, Skeletal; Muscular Atrophy; Oxidative Stress; Phenotype; Polycomb Repressive Complex 2; Protein Binding; RNA, Long Noncoding; Transcription, Genetic

2021
Histone modification of pain-related gene expression in spinal cord neurons under a persistent postsurgical pain-like state by electrocautery.
    Molecular brain, 2021, 09-20, Volume: 14, Issue:1

    Topics: Animals; Annexins; Benzazepines; Cornified Envelope Proline-Rich Proteins; Disease Models, Animal; Electrocoagulation; Female; Foot Injuries; Gene Expression Regulation; Gene Knock-In Techniques; Genes, fos; Genes, Reporter; Histone Code; Histones; Hyperalgesia; Jumonji Domain-Containing Histone Demethylases; Lysine; Male; Methylation; Mice; Mice, Inbred C57BL; Nerve Tissue Proteins; Neuralgia; Neurons; Pain, Postoperative; Pyrimidines; RNA, Messenger; Spinal Cord; Tamoxifen

2021
CPLM 4.0: an updated database with rich annotations for protein lysine modifications.
    Nucleic acids research, 2022, 01-07, Volume: 50, Issue:D1

    Topics: Acetylation; Animals; Bacteria; Biotinylation; Databases, Protein; Humans; Hydroxylation; Internet; Lysine; Methylation; Models, Molecular; Molecular Sequence Annotation; Mutation; Phosphorylation; Plants; Protein Binding; Protein Conformation; Protein Interaction Mapping; Protein Processing, Post-Translational; Proteins; RNA, Messenger; Software; Ubiquitination

2022
Enhancer-associated H3K4 methylation safeguards in vitro germline competence.
    Nature communications, 2021, 10-01, Volume: 12, Issue:1

    Topics: Animals; Cell Differentiation; Chromatin; Embryo, Mammalian; Enhancer Elements, Genetic; Gene Expression Regulation; Germ Cells; Germ Layers; Histones; Lysine; Male; Methylation; Mice; Mice, Transgenic; Mouse Embryonic Stem Cells; Mutation; Otx Transcription Factors; RNA-Seq; Single-Cell Analysis; Transcription Initiation Site; Transcription, Genetic

2021
Searching for methyllysine-binding aromatic cages.
    The Biochemical journal, 2021, 10-15, Volume: 478, Issue:19

    Topics: Algorithms; Cytosol; Databases, Protein; Epigenesis, Genetic; Histones; Humans; Lysine; Methylation; Models, Molecular; Protein Binding; Protein Domains; Protein Processing, Post-Translational

2021
Low-temperature plasma promotes growth of Haematococcus pluvialis and accumulation of astaxanthin by regulating histone H3 lysine 4 tri-methylation.
    Bioresource technology, 2022, Volume: 343

    Topics: Histones; Lysine; Methylation; Temperature; Xanthophylls

2022
ELK4-mediated lncRNA SNHG22 promotes gastric cancer progression through interacting with EZH2 and regulating miR-200c-3p/Notch1 axis.
    Cell death & disease, 2021, 10-18, Volume: 12, Issue:11

    Topics: Animals; Base Sequence; Binding Sites; Cell Line, Tumor; Cell Proliferation; Disease Progression; Enhancer of Zeste Homolog 2 Protein; ets-Domain Protein Elk-4; Female; Gene Expression Regulation, Neoplastic; Gene Silencing; Genes, Tumor Suppressor; Histones; Humans; Lysine; Methylation; Mice, Inbred BALB C; Mice, Nude; MicroRNAs; Neoplasm Invasiveness; Promoter Regions, Genetic; Protein Binding; Receptor, Notch1; RNA, Long Noncoding; Stomach Neoplasms; Up-Regulation

2021
TDG is a pig-specific epigenetic regulator with insensitivity to H3K9 and H3K27 demethylation in nuclear transfer embryos.
    Stem cell reports, 2021, 11-09, Volume: 16, Issue:11

    Topics: Animals; Blastocyst; Demethylation; DNA Methylation; Embryo, Mammalian; Epigenesis, Genetic; Gene Expression Profiling; Gene Expression Regulation; Histone Demethylases; Histones; Indoles; Lysine; Methylation; Nuclear Transfer Techniques; Pyridones; Swine; Thymine DNA Glycosylase

2021
Binding Methylarginines and Methyllysines as Free Amino Acids: A Comparative Study of Multiple Host Classes.
    Chembiochem : a European journal of chemical biology, 2022, 01-19, Volume: 23, Issue:2

    Topics: Amino Acids; Arginine; Lysine; Methylation; Protein Binding

2022
Flagellin lysine methyltransferase FliB catalyzes a [4Fe-4S] mediated methyl transfer reaction.
    PLoS pathogens, 2021, Volume: 17, Issue:11

    Topics: Bacterial Proteins; Flagellin; Iron-Sulfur Proteins; Lysine; Methylation; Methyltransferases; S-Adenosylmethionine; Salmonella typhi

2021
Mapping protein carboxymethylation sites provides insights into their role in proteostasis and cell proliferation.
    Nature communications, 2021, 11-18, Volume: 12, Issue:1

    Topics: Aging; Animals; Cell Line; Cell Proliferation; Endothelial Cells; Glycosylation; Glyoxal; Humans; Lysine; Methylation; Mice; Mice, Inbred C57BL; Microtubules; Primary Cell Culture; Protein Processing, Post-Translational; Proteins; Proteomics; Proteostasis; Tubulin

2021
The Retinoblastoma Tumor Suppressor Is Required for the NUP98-HOXA9-Induced Aberrant Nuclear Envelope Phenotype.
    Cells, 2021, 10-22, Volume: 10, Issue:11

    Topics: Animals; DNA-Binding Proteins; Embryo, Mammalian; Epigenesis, Genetic; Fibroblasts; Genes, Tumor Suppressor; HCT116 Cells; Histones; Homeodomain Proteins; Humans; Lamin Type A; Lysine; Membrane Proteins; Methylation; Mice; Nuclear Pore Complex Proteins; Phenotype; Polycomb-Group Proteins; Retinoblastoma Protein

2021
Global Reprogramming of Apoptosis-Related Genes during Brain Development.
    Cells, 2021, 10-27, Volume: 10, Issue:11

    Topics: Animals; Apoptosis; Apoptosis Regulatory Proteins; Brain; Caspases; Gene Expression Regulation, Developmental; Histone Code; Histones; Lysine; Methylation; Mice; Protein Processing, Post-Translational; Signal Transduction; Time Factors

2021
Loss of Polycomb Repressive Complex 2 Function Alters Digestive Organ Homeostasis and Neuronal Differentiation in Zebrafish.
    Cells, 2021, 11-12, Volume: 10, Issue:11

    Topics: Animals; Animals, Genetically Modified; Behavior, Animal; Cell Differentiation; Digestive System; Gene Expression Regulation, Developmental; Histones; Homeostasis; Larva; Liver; Lysine; Methylation; Motor Activity; Mutation; Neurons; Organ Specificity; Polycomb Repressive Complex 2; Protein Processing, Post-Translational; RNA, Messenger; Transcription Activator-Like Effector Nucleases; Zebrafish; Zebrafish Proteins

2021
Ezh2 promotes TRβ lysine methylation-mediated degradation in hepatocellular carcinoma.
    Genes & genomics, 2022, Volume: 44, Issue:3

    Topics: Carcinoma, Hepatocellular; Enhancer of Zeste Homolog 2 Protein; Glucose; Humans; Liver Neoplasms; Lysine; Methylation; Protein Processing, Post-Translational; Thyroid Hormone Receptors beta

2022
Development of an experiment-split method for benchmarking the generalization of a PTM site predictor: Lysine methylome as an example.
    PLoS computational biology, 2021, Volume: 17, Issue:12

    Topics: Benchmarking; Computational Biology; Deep Learning; Epigenome; Humans; Lysine; Methylation; Models, Genetic; Protein Processing, Post-Translational; Proteome

2021
Changes in Epigenetic Patterns Related to DNA Replication in
    Cells, 2021, 12-03, Volume: 10, Issue:12

    Topics: 5-Methylcytosine; Acetylation; Cadmium; Cell Cycle; Chromatin; DNA Replication; DNA, Plant; Epigenesis, Genetic; Histones; Lysine; Meristem; Methylation; Phosphorylation; Stress, Physiological; Vicia faba

2021
Histone H3K27 demethylase, Utx, regulates osteoblast-to-osteocyte differentiation.
    Biochemical and biophysical research communications, 2022, 01-29, Volume: 590

    Topics: Animals; Base Sequence; Bone Diseases, Metabolic; Cancellous Bone; Cell Count; Cell Differentiation; Down-Regulation; Epigenome; Genetic Loci; Histone Demethylases; Histones; Lysine; Methylation; Mice, Inbred C57BL; Mice, Knockout; Osteoblasts; Osteocytes; Phenotype; Protein Processing, Post-Translational; Transcriptome

2022
TdIF1-LSD1 Axis Regulates Epithelial-Mesenchymal Transition and Metastasis via Histone Demethylation of E-Cadherin Promoter in Lung Cancer.
    International journal of molecular sciences, 2021, 12-27, Volume: 23, Issue:1

    Topics: Animals; Cadherins; Carcinogenesis; Cell Line, Tumor; Cell Movement; Demethylation; DNA-Binding Proteins; Down-Regulation; Epithelial-Mesenchymal Transition; Gene Expression Regulation, Neoplastic; Gene Knockdown Techniques; Histone Demethylases; Histones; Lung Neoplasms; Lysine; Methylation; Mice, Inbred BALB C; Mice, Nude; Neoplasm Invasiveness; Neoplasm Metastasis; Promoter Regions, Genetic; Protein Binding; Transcription Factors

2021
Multi-omic profiling of histone variant H3.3 lysine 27 methylation reveals a distinct role from canonical H3 in stem cell differentiation.
    Molecular omics, 2022, 05-11, Volume: 18, Issue:4

    Topics: Animals; Cell Differentiation; Histones; Lysine; Methylation; Mice; Protein Processing, Post-Translational; Transcription Factors

2022
Structural basis for the recognition of methylated histone H3 by the Arabidopsis LHP1 chromodomain.
    The Journal of biological chemistry, 2022, Volume: 298, Issue:3

    Topics: Animals; Arabidopsis; Arabidopsis Proteins; Chromosomal Proteins, Non-Histone; Histones; Lysine; Methylation; Peptides; Transcription Factors

2022
DOT1L activity in leukemia cells requires interaction with ubiquitylated H2B that promotes productive nucleosome binding.
    Cell reports, 2022, 02-15, Volume: 38, Issue:7

    Topics: Cell Line, Tumor; Cell Proliferation; Gene Rearrangement; Histone-Lysine N-Methyltransferase; Histones; Humans; Leukemia; Lysine; Male; Methylation; Models, Molecular; Myeloid-Lymphoid Leukemia Protein; Nucleosomes; Protein Binding; Ubiquitin; Ubiquitination

2022
Histone marks regulate the epithelial-to-mesenchymal transition via alternative splicing.
    Cell reports, 2022, 02-15, Volume: 38, Issue:7

    Topics: Acetylation; Alternative Splicing; Base Sequence; Catenins; Cell Line; Chromatin; Delta Catenin; Epithelial-Mesenchymal Transition; Exons; Female; Histone Code; Histones; Humans; Lysine; Methylation; Receptor, Fibroblast Growth Factor, Type 2; RNA Polymerase II; RNA Precursors; Time Factors

2022
SMYD5 is a histone H3-specific methyltransferase mediating mono-methylation of histone H3 lysine 36 and 37.
    Biochemical and biophysical research communications, 2022, 04-09, Volume: 599

    Topics: Animals; Gene Deletion; Histidine; Histones; Humans; Lysine; Methylation; Methyltransferases; Mice, Knockout; Protein Processing, Post-Translational

2022
Histone H3 Lysine 4 and 27 Trimethylation Landscape of Human Alzheimer's Disease.
    Cells, 2022, 02-19, Volume: 11, Issue:4

    Topics: Alzheimer Disease; Epigenesis, Genetic; Female; Histones; Humans; Lysine; Male; Methylation; Neurodegenerative Diseases; Promoter Regions, Genetic

2022
Methylation at a conserved lysine residue modulates tau assembly and cellular functions.
    Molecular and cellular neurosciences, 2022, Volume: 120

    Topics: Animals; Lysine; Methylation; Mice; Neurons; Phosphorylation; Protein Processing, Post-Translational; tau Proteins

2022
The histone H3.1 variant regulates TONSOKU-mediated DNA repair during replication.
    Science (New York, N.Y.), 2022, 03-18, Volume: 375, Issue:6586

    Topics: Arabidopsis; Arabidopsis Proteins; DNA Breaks, Double-Stranded; DNA Polymerase theta; DNA Repair; DNA Replication; DNA-Directed DNA Polymerase; DNA, Plant; Genome, Plant; Genomic Instability; Histones; Lysine; Methylation; Methyltransferases; Mutation; Protein Interaction Domains and Motifs

2022
Evaluation of Jumonji C lysine demethylase substrate preference to guide identification of
    STAR protocols, 2022, 06-17, Volume: 3, Issue:2

    Topics: Histones; Jumonji Domain-Containing Histone Demethylases; Lysine; Methylation

2022
H3K27me3 conditions chemotolerance in triple-negative breast cancer.
    Nature genetics, 2022, Volume: 54, Issue:4

    Topics: Drug Resistance, Neoplasm; Histones; Humans; Lysine; Methylation; Neoplasm Recurrence, Local; Triple Negative Breast Neoplasms

2022
RBBP4 dysfunction reshapes the genomic landscape of H3K27 methylation and acetylation and disrupts gene expression.
    G3 (Bethesda, Md.), 2022, 05-30, Volume: 12, Issue:6

    Topics: Acetylation; Animals; Gene Expression; Genomics; Histones; Lysine; Methylation; Mice; Polycomb Repressive Complex 2; Retinoblastoma-Binding Protein 4

2022
Computational Study of Methionine Methylation Process Catalyzed by SETD3.
    Interdisciplinary sciences, computational life sciences, 2022, Volume: 14, Issue:4

    Topics: Actins; Catalysis; Histidine; Histone Methyltransferases; Lysine; Methionine; Methylation; Methyltransferases; Peptides; Racemethionine

2022
EGLN1 prolyl hydroxylation of hypoxia-induced transcription factor HIF1α is repressed by SET7-catalyzed lysine methylation.
    The Journal of biological chemistry, 2022, Volume: 298, Issue:6

    Topics: Animals; Catalysis; Histone-Lysine N-Methyltransferase; Humans; Hydroxylation; Hypoxia; Hypoxia-Inducible Factor 1, alpha Subunit; Hypoxia-Inducible Factor-Proline Dioxygenases; Lysine; Methylation; Oxygen; Protein Processing, Post-Translational

2022
Structural basis of nucleosomal H4K20 methylation by methyltransferase SET8.
    FASEB journal : official publication of the Federation of American Societies for Experimental Biology, 2022, Volume: 36, Issue:6

    Topics: DNA Replication; Histones; Lysine; Methylation; Nucleosomes

2022
Polycomb-mediated genome architecture enables long-range spreading of H3K27 methylation.
    Proceedings of the National Academy of Sciences of the United States of America, 2022, 05-31, Volume: 119, Issue:22

    Topics: Animals; Chromatin Immunoprecipitation; Chromosomes; Embryo, Mammalian; Enhancer of Zeste Homolog 2 Protein; Gene Expression Regulation, Developmental; Gene Silencing; Histones; Humans; Induced Pluripotent Stem Cells; Lysine; Methylation; Mice; Nucleic Acid Conformation; Polycomb Repressive Complex 2

2022
Exercise-induced histone H3 trimethylation at lysine 27 facilitates the adaptation of skeletal muscle to exercise in mice.
    The Journal of physiology, 2022, Volume: 600, Issue:14

    Topics: Animals; Histone Code; Histones; Lysine; Methylation; Mice; Muscle, Skeletal; RNA Polymerase II

2022
Histone gene editing probes functions of H3K27 modifications in mammals.
    Nature genetics, 2022, Volume: 54, Issue:6

    Topics: Animals; Gene Editing; Histones; Lysine; Mammals; Methylation

2022
Not all Is SET for Methylation: Evolution of Eukaryotic Protein Methyltransferases.
    Methods in molecular biology (Clifton, N.J.), 2022, Volume: 2529

    Topics: Animals; Arginine; Eukaryota; Histone-Lysine N-Methyltransferase; Histones; Lysine; Methylation; Methyltransferases; Protein Methyltransferases; Protein Processing, Post-Translational

2022
Specificity Analysis of Protein Methyltransferases and Discovery of Novel Substrates Using SPOT Peptide Arrays.
    Methods in molecular biology (Clifton, N.J.), 2022, Volume: 2529

    Topics: Amino Acid Sequence; Lysine; Methylation; Methyltransferases; Peptides; Protein Methyltransferases; Substrate Specificity

2022
Epigenetics of the frozen brain: roles for lysine methylation in hypometabolism.
    FEBS letters, 2022, Volume: 596, Issue:16

    Topics: Animals; Brain; Epigenesis, Genetic; Freezing; Histones; Lysine; Methylation; Ranidae

2022
Interpretable machine learning identification of arginine methylation sites.
    Computers in biology and medicine, 2022, Volume: 147

    Topics: Algorithms; Arginine; Computational Biology; Lysine; Machine Learning; Methylation; Proteins

2022
KDM4C Contributes to Trophoblast-like Stem Cell Conversion from Porcine-Induced Pluripotent Stem Cells (piPSCs) via Regulating CDX2.
    International journal of molecular sciences, 2022, Jul-08, Volume: 23, Issue:14

    Topics: Animals; Induced Pluripotent Stem Cells; Lysine; Methylation; Pluripotent Stem Cells; Swine; Trophoblasts

2022
Lysine 27 dimethylation of Drosophila linker histone dH1 contributes to heterochromatin organization independently of H3K9 methylation.
    Nucleic acids research, 2022, 09-09, Volume: 50, Issue:16

    Topics: Animals; Chromatin; DNA Transposable Elements; Drosophila; Drosophila melanogaster; Drosophila Proteins; Epigenesis, Genetic; Heterochromatin; Histones; Lysine; Methylation; Protein Processing, Post-Translational

2022
Dissecting the Kinetic Mechanism of Human Lysine Methyltransferase 2D and Its Interactions with the WRAD2 Complex.
    Biochemistry, 2022, 09-20, Volume: 61, Issue:18

    Topics: Histone-Lysine N-Methyltransferase; Histones; Humans; Intracellular Signaling Peptides and Proteins; Kinetics; Lysine; Methylation; Myeloid-Lymphoid Leukemia Protein

2022
HIV-1 Preintegration Complex Preferentially Integrates the Viral DNA into Nucleosomes Containing Trimethylated Histone 3-Lysine 36 Modification and Flanking Linker DNA.
    Journal of virology, 2022, 09-28, Volume: 96, Issue:18

    Topics: Chromatin; Chromosomes, Human; DNA, Viral; Histone Code; Histones; HIV Infections; HIV Integrase; HIV-1; Humans; Lysine; Methylation; Nucleosomes; Virus Integration

2022
Putative SET-domain methyltransferases in
    Virulence, 2022, Volume: 13, Issue:1

    Topics: Child, Preschool; Cryptosporidiosis; Cryptosporidium; Cryptosporidium parvum; Epigenesis, Genetic; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation

2022
Methylation patterns of Lys9 and Lys27 on histone H3 correlate with patient outcome and tumor progression in lung cancer.
    Annals of diagnostic pathology, 2022, Volume: 61

    Topics: Adenocarcinoma of Lung; DNA Methylation; Histones; Humans; Lung Neoplasms; Lysine; Methylation; Prognosis; Retrospective Studies

2022
Roles of C/EBP-homologous protein and histone H3 lysine 4 methylation in arsenic-induced mitochondrial apoptosis in hepatocytes.
    Toxicology and industrial health, 2022, Volume: 38, Issue:11

    Topics: Apoptosis; Arsenic; bcl-2-Associated X Protein; Hepatocytes; Histone Demethylases; Histones; Lysine; Methylation; RNA, Small Interfering

2022
H3K9me1/2 methylation limits the lifespan of
    eLife, 2022, 09-20, Volume: 11

    Topics: Animals; Caenorhabditis elegans; Caenorhabditis elegans Proteins; Forkhead Transcription Factors; Histone Methyltransferases; Histones; Insulin; Insulin-Like Growth Factor I; Longevity; Lysine; Mammals; Methylation; Methyltransferases; Receptor, Insulin; RNA, Messenger

2022
Unraveling the Role of the Tyrosine Tetrad from the Binding Site of the Epigenetic Writer MLL3 in the Catalytic Mechanism and Methylation Multiplicity.
    International journal of molecular sciences, 2022, Sep-07, Volume: 23, Issue:18

    Topics: Alanine; Binding Sites; Epigenesis, Genetic; Histone-Lysine N-Methyltransferase; Histones; Lysine; Methylation; Phenylalanine; Tyrosine; Water

2022
Multifactorial feature extraction and site prognosis model for protein methylation data.
    Briefings in functional genomics, 2023, 01-20, Volume: 22, Issue:1

    Topics: Algorithms; Arginine; Computational Biology; Lysine; Methylation; Prognosis; Protein Processing, Post-Translational; Proteomics

2023
The assembly of mammalian SWI/SNF chromatin remodeling complexes is regulated by lysine-methylation dependent proteolysis.
    Nature communications, 2022, 11-05, Volume: 13, Issue:1

    Topics: Animals; Chromatin; Chromatin Assembly and Disassembly; Histone Demethylases; Lysine; Mammals; Methylation; Mice; Proteolysis

2022
High-affinity chromodomains engineered for improved detection of histone methylation and enhanced CRISPR-based gene repression.
    Nature communications, 2022, 11-15, Volume: 13, Issue:1

    Topics: Chromatin; Histones; Humans; Lysine; Methylation; Protein Processing, Post-Translational

2022
Poly ADP-ribosylation of SET8 leads to aberrant H4K20 methylation in mammalian nuclear genome.
    Communications biology, 2022, 11-25, Volume: 5, Issue:1

    Topics: ADP-Ribosylation; Animals; Histone-Lysine N-Methyltransferase; Histones; Lysine; Mammals; Methylation; Protein Processing, Post-Translational

2022
Proteome-wide identification of non-histone lysine methylation in tomato during fruit ripening.
    Journal of advanced research, 2022, Volume: 42

    Topics: Chromatography, Liquid; Fruit; Gene Expression Regulation, Plant; Histones; Lysine; Methylation; Plant Proteins; Proteome; Solanum lycopersicum; Tandem Mass Spectrometry

2022
Structural and Energetic Origin of Different Product Specificities and Activities for SETD3 and Its Mutants on the Methylation of the β-Actin H73K Peptide: Insights from a QM/MM Study.
    Journal of chemical theory and computation, 2023, Jan-10, Volume: 19, Issue:1

    Topics: Actins; Histone-Lysine N-Methyltransferase; Lysine; Methylation; Molecular Dynamics Simulation; Peptides

2023
A complete methyl-lysine binding aromatic cage constructed by two domains of PHF2.
    The Journal of biological chemistry, 2023, Volume: 299, Issue:2

    Topics: Histones; Homeodomain Proteins; Lysine; Methylation; Peptides; Protein Binding; Protein Domains

2023
Set7 methyltransferase roles in myocardial protection from chronic stressors.
    Clinical science (London, England : 1979), 2023, 01-13, Volume: 137, Issue:1

    Topics: Chromatin; Histone-Lysine N-Methyltransferase; Histones; Lysine; Methylation

2023
Global lysine methylome profiling using systematically characterized affinity reagents.
    Scientific reports, 2023, 01-07, Volume: 13, Issue:1

    Topics: Antibodies; Epigenome; Humans; Lysine; Methylation; Peptides; Proteome

2023
JMJD8 Functions as a Novel AKT1 Lysine Demethylase.
    International journal of molecular sciences, 2022, Dec-27, Volume: 24, Issue:1

    Topics: Jumonji Domain-Containing Histone Demethylases; Lysine; Methylation; NF-kappa B; Signal Transduction

2022
Structural remodeling of AAA+ ATPase p97 by adaptor protein ASPL facilitates posttranslational methylation by METTL21D.
    Proceedings of the National Academy of Sciences of the United States of America, 2023, 01-24, Volume: 120, Issue:4

    Topics: Adaptor Proteins, Signal Transducing; Adenosine Triphosphatases; Animals; ATPases Associated with Diverse Cellular Activities; Humans; Lysine; Methylation; Methyltransferases; Protein Binding; Protein Processing, Post-Translational; Transcription Factors; Valosin Containing Protein

2023
Lysine 27 of histone H3.3 is a fine modulator of developmental gene expression and stands as an epigenetic checkpoint for lignin biosynthesis in Arabidopsis.
    The New phytologist, 2023, Volume: 238, Issue:3

    Topics: Arabidopsis; Epigenesis, Genetic; Genes, Developmental; Histones; Lignin; Lysine; Methylation

2023
Menin "reads" H3K79me2 mark in a nucleosomal context.
    Science (New York, N.Y.), 2023, 02-17, Volume: 379, Issue:6633

    Topics: Animals; Chromatin; Cryoelectron Microscopy; Epigenesis, Genetic; Histones; Humans; Lysine; Methylation; Molecular Probes; Nucleosomes; Protein Processing, Post-Translational; Proteomics; Proto-Oncogene Proteins

2023
Methylation of CENP-A/Cse4 on arginine 143 and lysine 131 regulates kinetochore stability in yeast.
    Genetics, 2023, 04-06, Volume: 223, Issue:4

    Topics: Arginine; Centromere Protein A; Chromosomal Proteins, Non-Histone; DNA-Binding Proteins; Histones; Kinetochores; Lysine; Methylation; Nuclear Proteins; Nucleosomes; Protein Processing, Post-Translational; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins

2023
Selenium nanoparticles modulate histone methylation via lysine methyltransferase activity and S-adenosylhomocysteine depletion.
    Redox biology, 2023, Volume: 61

    Topics: Antioxidants; Chitosan; Histone-Lysine N-Methyltransferase; Histones; Lysine; Methylation; S-Adenosylhomocysteine; Selenium

2023
Histone methylation readers MRG1/MRG2 interact with the transcription factor TCP14 to positively modulate cytokinin sensitivity in Arabidopsis.
    Journal of genetics and genomics = Yi chuan xue bao, 2023, Volume: 50, Issue:8

    Topics: Arabidopsis; Arabidopsis Proteins; Chromosomal Proteins, Non-Histone; Cytokinins; Gene Expression Regulation, Plant; Histones; Lysine; Methylation; Transcription Factors

2023
Methylation of histone H3 lysine 4 is required for maintenance of beta cell function in adult mice.
    Diabetologia, 2023, Volume: 66, Issue:6

    Topics: Animals; Diabetes Mellitus, Type 2; Histone-Lysine N-Methyltransferase; Histones; Insulins; Lysine; Methylation; Mice

2023
Identification of nonhistone substrates of the lysine methyltransferase PRDM9.
    The Journal of biological chemistry, 2023, Volume: 299, Issue:5

    Topics: Apoptosis Regulatory Proteins; Histone-Lysine N-Methyltransferase; Histones; Lysine; Methylation; Nuclear Proteins; Protein Processing, Post-Translational; Substrate Specificity

2023
Antibody toolkit to investigate eEF1A methylation dynamics in mRNA translation elongation.
    The Journal of biological chemistry, 2023, Volume: 299, Issue:6

    Topics: Antibodies; Lysine; Methylation; Peptide Chain Elongation, Translational; Peptide Elongation Factor 1

2023
Nanofluidic Device for Detection of Lysine Methylpeptides and Sensing of Lysine Methylation.
    Analytical chemistry, 2023, 05-16, Volume: 95, Issue:19

    Topics: Lysine; Methylation; Methyltransferases; Protein Processing, Post-Translational; Proteins

2023
The T1150A cancer mutant of the protein lysine dimethyltransferase NSD2 can introduce H3K36 trimethylation.
    The Journal of biological chemistry, 2023, Volume: 299, Issue:6

    Topics: Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation; Mutation; Neoplasms

2023
Methylation of lysine 36 on histone H3 is required to control transposon activities in somatic cells.
    Life science alliance, 2023, Volume: 6, Issue:8

    Topics: Animals; DNA Transposable Elements; DNA-Binding Proteins; Drosophila melanogaster; Drosophila Proteins; Histone-Lysine N-Methyltransferase; Histones; Lysine; Methylation; RNA, Small Interfering; Transcription Factors

2023
Epigenetic plasticity safeguards heterochromatin configuration in mammals.
    Nucleic acids research, 2023, 07-07, Volume: 51, Issue:12

    Topics: Animals; Epigenesis, Genetic; Heterochromatin; Histone Methyltransferases; Histones; Lysine; Mammals; Methylation

2023
The FAM86 domain of FAM86A confers substrate specificity to promote EEF2-Lys525 methylation.
    The Journal of biological chemistry, 2023, Volume: 299, Issue:7

    Topics: Crystallography, X-Ray; Humans; Lysine; Methylation; Methyltransferases; Models, Molecular; Peptide Elongation Factor 2; Point Mutation; Protein Domains; Protein Structure, Tertiary; S-Adenosylmethionine; Substrate Specificity

2023
ASH2L, a COMPASS core subunit, is involved in the cell invasion and migration of triple-negative breast cancer cells through the epigenetic control of histone H3 lysine 4 methylation.
    Biochemical and biophysical research communications, 2023, 08-20, Volume: 669

    Topics: DNA-Binding Proteins; Epigenesis, Genetic; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation; Nuclear Proteins; Transcription Factors; Triple Negative Breast Neoplasms

2023
SETD7 promotes metastasis of triple-negative breast cancer by YY1 lysine methylation.
    Biochimica et biophysica acta. Molecular basis of disease, 2023, Volume: 1869, Issue:7

    Topics: Cell Proliferation; Female; Histone-Lysine N-Methyltransferase; Humans; Lysine; Methylation; Protein Processing, Post-Translational; Triple Negative Breast Neoplasms; YY1 Transcription Factor

2023
Epigenetic Histone Methylation of PPARγ and CPT1A Signaling Contributes to Betahistine Preventing Olanzapine-Induced Dyslipidemia.
    International journal of molecular sciences, 2023, May-23, Volume: 24, Issue:11

    Topics: Animals; Benzodiazepines; Betahistine; Carnitine O-Palmitoyltransferase; Dyslipidemias; Epigenesis, Genetic; Histones; Lysine; Methylation; Olanzapine; PPAR gamma; Rats

2023
Lysine 68 Methylation-Dependent SOX9 Stability Control Modulates Chondrogenic Differentiation in Dental Pulp Stem Cells.
    Advanced science (Weinheim, Baden-Wurttemberg, Germany), 2023, Volume: 10, Issue:24

    Topics: Cell Differentiation; Cells, Cultured; Chondrogenesis; Dental Pulp; Lysine; Methylation; Stem Cells

2023
Comparative analysis of the occupancy of Histone H3 Lysine 4 methylation in the cells treated with TGFβ and Interferonγ.
    Gene, 2023, Aug-30, Volume: 879

    Topics: Epigenesis, Genetic; Histones; Humans; Interferon-gamma; Lysine; Methylation; Protein Processing, Post-Translational; Transforming Growth Factor beta

2023
Combined low levels of H4K16ac and H4K20me3 predicts poor prognosis in breast cancer.
    International journal of clinical oncology, 2023, Volume: 28, Issue:9

    Topics: Breast Neoplasms; Female; Histones; Humans; Lysine; Methylation; Prognosis

2023
Lysine methylation promotes NFAT5 activation and determines temozolomide efficacy in glioblastoma.
    Nature communications, 2023, 07-10, Volume: 14, Issue:1

    Topics: ErbB Receptors; Glioblastoma; Humans; Lysine; Methylation; NFATC Transcription Factors; Temozolomide; TNF Receptor-Associated Factor 6; Transcription Factors

2023
Limited choice of natural amino acids as mimetics restricts design of protein lysine methylation studies.
    Nature communications, 2023, 07-11, Volume: 14, Issue:1

    Topics: Amines; Amino Acids; Biomimetics; Lysine; Methylation

2023
Lysine Methyltransferase SMYD1 Regulates Myogenesis via skNAC Methylation.
    Cells, 2023, Jun-22, Volume: 12, Issue:13

    Topics: DNA-Binding Proteins; Lysine; Methylation; Methyltransferases; Muscle Development; Myocardium

2023
Diverse modes of H3K36me3-guided nucleosomal deacetylation by Rpd3S.
    Nature, 2023, Volume: 620, Issue:7974

    Topics: Acetylation; Cryoelectron Microscopy; DNA, Fungal; Epigenesis, Genetic; Histones; Lysine; Methylation; Multiprotein Complexes; Nucleosomes; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins

2023
Proteome-Wide Identification of Non-histone Lysine Methylation during Grape Berry Ripening.
    Journal of agricultural and food chemistry, 2023, Aug-09, Volume: 71, Issue:31

    Topics: Gene Expression Profiling; Histones; Lysine; Methylation; Peptides; Protein Interaction Maps; Proteome; Vitis

2023
Advances in direct detection of lysine methylation and acetylation by nuclear magnetic resonance using
    Methods (San Diego, Calif.), 2023, Volume: 218

    Topics: Acetylation; Lysine; Magnetic Resonance Spectroscopy; Methylation; Protein Processing, Post-Translational

2023
LncRNA H19-EZH2 interaction promotes liver fibrosis via reprogramming H3K27me3 profiles.
    Acta pharmacologica Sinica, 2023, Volume: 44, Issue:12

    Topics: Animals; Epigenesis, Genetic; Hepatic Stellate Cells; Histones; Liver; Liver Cirrhosis; Lysine; Methylation; Mice; RNA, Long Noncoding

2023
Lysine methylation of PPP1CA by the methyltransferase SUV39H2 disrupts TFEB-dependent autophagy and promotes intervertebral disc degeneration.
    Cell death and differentiation, 2023, Volume: 30, Issue:9

    Topics: Autophagy; Basic Helix-Loop-Helix Leucine Zipper Transcription Factors; Histone-Lysine N-Methyltransferase; Humans; Intervertebral Disc Degeneration; Lysine; Methylation; Protein Phosphatase 1; Protein Processing, Post-Translational; Proteomics

2023
BRWD3 promotes KDM5 degradation to maintain H3K4 methylation levels.
    Proceedings of the National Academy of Sciences of the United States of America, 2023, 09-26, Volume: 120, Issue:39

    Topics: Animals; Chromatin; Drosophila; Histone Code; Lysine; Methylation; Protein Processing, Post-Translational

2023
Acetyl-methyllysine marks chromatin at active transcription start sites.
    Nature, 2023, Volume: 622, Issue:7981

    Topics: Acetylation; Animals; Chromatin; Histone Deacetylases; Histones; Humans; Lysine; Methylation; Peptides; Protein Processing, Post-Translational; Transcription Initiation Site

2023
Rare de novo gain-of-function missense variants in DOT1L are associated with developmental delay and congenital anomalies.
    American journal of human genetics, 2023, 11-02, Volume: 110, Issue:11

    Topics: Congenital Abnormalities; Developmental Disabilities; Drosophila; Drosophila Proteins; Gain of Function Mutation; Histone-Lysine N-Methyltransferase; Histones; Humans; Lysine; Methylation; Methyltransferases; Neoplasms

2023
SET7/9-mediated methylation affects oncogenic functions of histone demethylase JMJD2A.
    JCI insight, 2023, Oct-23, Volume: 8, Issue:20

    Topics: Carcinogenesis; Cell Transformation, Neoplastic; Histone Demethylases; Humans; Jumonji Domain-Containing Histone Demethylases; Lysine; Male; Matrix Metalloproteinase 1; Methylation; Prostatic Neoplasms

2023
TNRC18 engages H3K9me3 to mediate silencing of endogenous retrotransposons.
    Nature, 2023, Volume: 623, Issue:7987

    Topics: Animals; Animals, Newborn; Cell Line; Chromatin; Co-Repressor Proteins; Endogenous Retroviruses; Epigenesis, Genetic; Gene Expression Profiling; Gene Silencing; Genome; Histone Deacetylases; Histones; Humans; Intracellular Signaling Peptides and Proteins; Lysine; Methylation; Mice; Protein Domains; Retroelements; Terminal Repeat Sequences

2023
Asymmetric distribution of parental H3K9me3 in S phase silences L1 elements.
    Nature, 2023, Volume: 623, Issue:7987

    Topics: DNA Replication; Gene Silencing; Histones; Humans; Long Interspersed Nucleotide Elements; Lysine; Methylation; S Phase

2023