Page last updated: 2024-08-26

hydrogen sulfite and 5-methylcytosine

hydrogen sulfite has been researched along with 5-methylcytosine in 88 studies

Research

Studies (88)

Timeframe	Studies, this research(%)	All Research%
pre-1990	0 (0.00)	18.7374
1990's	5 (5.68)	18.2507
2000's	6 (6.82)	29.6817
2010's	56 (63.64)	24.3611
2020's	21 (23.86)	2.80

Authors

Authors	Studies
Jost, JP; Raizis, AM; Schmitt, F	1
Heinlein, M; Kunze, R; Wang, L	1
DePamphilis, ML; Rein, T; Zorbas, H	1
Buiting, K; Dittrich, B; Doerfler, W; Horsthemke, B; Schmitz, B; Zeschnigk, M	1
Radlińska, M; Skowronek, K	1
Hayatsu, H; Negishi, K; Tsuji, K	1
Hayatsu, H; Negishi, K; Shiraishi, M	1
Nakatani, K; Oka, Y; Peng, T; Takei, F	1
Freitag, M; Pomraning, KR; Smith, KM	1
Burden, AF; Genereux, DP; Johnson, WC; Laird, CD; Stöger, R	1
Hanna, K; Lyko, F; Pollex, T; Schaefer, M	1
Huang, Y; Liu, DR; Pastor, WA; Rao, A; Shen, Y; Tahiliani, M	1
Dunican, D; Meehan, R; Nestor, C; Ruzov, A	1
Ai, L; Brown, KD; Darst, RP; Kladde, MP; Pardo, CE	1
Chávez, L; Kauder, S; Verdin, E	1
Aichinger, E; Köhler, C	1
Blair, T; Corrie, SR; Feng, Q; Kiviat, NB; Sova, P; Trau, M	1
Cowley, MJ; Cropley, JE; Li, CC; Martin, DI; Preiss, T; Suter, CM	1
Paszkowski, J; Reinders, J	1
Preiss, T; Squires, JE	1
Acevedo, LG; Jelinek, MA; Sanz, A	1
Bartholomew, B; Darst, RP; Gangaraju, VK; Kladde, MP; Nabilsi, NH; Pardo, CE; Pondugula, S	1
Balasubramanian, S; Booth, MJ; Branco, MR; Ficz, G; Krueger, F; Oxley, D; Reik, W	1
Miller, AK; Schüler, P	1
Li, G; Lim, JQ; Ruan, Y; Sung, WK; Tennakoon, C; Wei, CL; Wong, E	1
He, C; Hon, GC; Jin, P; Ren, B; Song, CX; Szulwach, KE; Yu, M	1
Dai, Q; He, C; Hon, GC; Jin, P; Lu, X; Min, JH; Park, B; Ren, B; Song, CX; Street, CR; Szulwach, KE; Tan, H; Wang, X; Yu, M; Zhang, L	1
Bollig-Fischer, A; Cao, X; Chen, CC; Cingolani, P; Coon, M; Garfinkel, MD; Huang, Y; Hudson, ME; Khetani, RS; Land, S; Robinson, GE; Ruden, DM; Sammak, A; Zhong, S	1
Calvo, MI; Carrasco, E; Espada, J	1
Hu, D; Jin, L; Min, S; Wang, L; Wang, W; Zhang, C	1
Cai, W; Chen, B; Liu, Q; Mao, F; Sun, ZS; Wang, Z; Wu, H; Wu, J; Xie, Q; You, M	1
Bachman, M; Balasubramanian, S; Beck, S; Beraldi, D; Field, SF; Stewart, SK	1
Yuan, BF	1
Bian, Y; Dong, Y; Liu, B; Liu, C; Wang, X; Yang, X; Zhang, H; Zhang, Z; Zhu, B	1
Burgess, D; Eichten, SR; Greally, JM; Green, D; Hermanson, PJ; Jeddeloh, J; Li, Q; Patterson, N; Richmond, T; Rosenbaum, H; Springer, NM; Suzuki, M; Wendt, J	1
Chung, DH; Groom, J; He, C; Ji, L; Neumann, DA; Schmitz, RJ; Westpheling, J; Yu, M	1
Han, D; He, C; Jiang, X; Liu, M; Lu, X; Sun, Z; Xia, B; Xie, W; Yi, C; Yin, Q; Zeng, H; Zhou, A	1
Fukuzawa, S; Suetake, I; Tachibana, K; Tajima, S	1
Bianchessi, V; Capogrossi, MC; Farina, F; Gualdi, V; Lauri, A; Nigro, P; Pompilio, G; Rizzi, V; Vinci, MC	1
Balasubramanian, S; Beraldi, D; Billker, O; McInroy, GR; Modrzynska, K; Raiber, EA; van Delft, P	1
Freeman, WM; Giles, CB; Hadad, N; Masser, DR; Richardson, A; Sonntag, WE; Stanford, DR; Wren, JD	1
Axelsson, T; Barragan, I; Ewels, P; Ingelman-Sundberg, M; Ivanov, M; Käller, M; Kals, M; Lauschke, V; Lehtiö, J; Milani, L	1
Wu, H; Wu, X; Zhang, Y	1
Kisliouk, T; Marco, A; Meiri, N; Tabachnik, T; Weller, A	1
Ficz, G; Giehr, P; Kyriakopoulos, C; Walter, J; Wolf, V	1
Incarnato, D; Krepelova, A; Neri, F; Oliviero, S; Parlato, C	1
Fukuzawa, S; Suetake, I; Tachibana, K; Tajima, S; Takahashi, S	1
Aburatani, H; Hayashi, G; Kamio, A; Koyama, K; Nagae, G; Okamoto, A; Shiota, H; Umeda, T	1
Bourret, G; Bramoulle, A; Chen, GG; Ehlert, U; Ernst, C; Gardini, ES; Gross, JA; Lepage, P; Lutz, PE; Masurel, A; Maussion, G; Mechawar, N; Théroux, JF; Turecki, G; Vaillancourt, K	1
Clark, SJ; Gould, CM; Luu, PL; Nair, SS; Skvortsova, K; Stirzaker, C; Zotenko, E	1
Moran, S	1
Adey, A; Eils, R; Plass, C; Shendure, J; Wang, Q; Weichenhan, D; Wolf, S	1
Peat, JR; Smallwood, SA	1
Giehr, P; Walter, J	1
Han, D; He, C; Hon, GC; Yu, M	1
Chandra, T; Green, AR; Kirschner, K; Krueger, F	1
Amrutkar, SM; Shao, F; Wu, Q	1
Bu, R; Gao, G; Jia, Z; Ren, Y; Shi, Y; Wang, T; Xing, L; Zhang, B; Zhang, L	1
DiStefano, JK; Leti, F; Llaci, L; Malenica, I	1
Giehr, P; Kyriakopoulos, C; Lepikhov, K; Wallner, S; Walter, J; Wolf, V	1
Chung, TH; Jia, XY; Sun, X; Tan, D	1
Edwards, JR; Gabel, HW; Schlosberg, CE; Wu, DY	1
Bai, C; Bi, Y; Chen, L; Liu, Y; Schuster-Böckler, B; Siejka-Zielińska, P; Song, CX; Tomkova, M; Velikova, G; Yuan, F	1
Benner, A; Slynko, A	1
Kriegel, AJ; Liang, M; Liu, Y	1
Singer, BD	1
Gouil, Q; Keniry, A	1
An, Z; Li, F; Li, J; Liu, J; Luo, J; Zhang, Z	1
Cui, X; Dai, Q; Dou, X; Gao, Y; He, C; Liu, C; Liu, J; Narkhede, P; Zhang, LS; Zhao, BS	1
Gibas, P; Gordevičius, J; Klimašauskas, S; Kriukienė, E; Narmontė, M; Staševskij, Z	1
Farrell, C; Fehling, HL; Henkhaus, R; Morselli, M; Pellegrini, M; Rubbi, L	1
Huang, Z; Kohli, RM; Meng, Y; Pfeifer, GP; Szabó, PE	1
Branco, MR; De Borre, M	1
Berrios, KN; Kohli, RM; Luo, M; Schutsky, EK; Wang, T; Wu, H	1
Ahmed, AA; Chen, J; Cheng, J; Hu, Z; Inoue, M; Liu, Y; Siejka-Zielińska, P; Song, CX	1
Eden, HE; Huang, Z; Robertson, KD; Rothbart, SB; Tiedemann, RL	1
Kiihl, SF	1
Bogdanovic, O; Skvortsova, K	1
Xu, X; Zeisberg, EM	1
Burgess, A; David, R; Do, T; Li, J; Ng, PQ; Nguyen, V; Searle, I; Wu, X; Zhao, J	1
Akalin, A; Alonso, A; Axelsson, T; Blume, A; Bruinsma, S; Butler, D; Campbell, MA; Cavalcante, R; Chen, Z; Davis, JW; Deng, Y; Foox, J; Franke, V; Golda, G; Gong, T; Greally, JM; Guo, S; Gurvitch, J; Hong, H; Ibanez de Caceres, I; Ishii, J; Lacey, M; Lalancette, C; Langhorst, BW; Lent, S; Li, J; Liao, W; Liljedahl, U; Lundmark, A; Mason, CE; Megherbi, DB; Melnick, A; Menor, M; Mozsary, C; Muszynska, A; Nasu, M; Ning, B; Nordlund, J; Padmanabhan, KR; Ponnaluri, VKC; Raine, A; Rodriguez-Antolin, C; Rosas, R; Scherer, A; Sheridan, C; Suzuki, M; Tong, W; Wang, C; Wang, H; Wang, Y; Williams, L; Wos, F; Xiao, W; Xu, J; Yang, X; Yang, Z; Łabaj, PP	1
Ferrão, J; Machado, M; Sebastião Rodrigues, A; Silva, C; Vieira, L	1
Chen, KK; Feng, YQ; Ji, TT; Tang, F; Xie, C; Xie, NB; Xiong, J; Yu, SY; Yuan, BF	1
Chen, KK; Feng, YQ; Guo, X; Ji, TT; Tang, F; Wang, M; Xie, C; Xie, NB; Xiong, J; Yu, SY; Yuan, BF	1
Balaseviciute, U; Bech-Serra, JJ; Davalos, V; De La Torre, C; Esteller, M; Fernández-Rebollo, I; García-Prieto, CA; Guarnacci, M; Guil, S; Janin, M; Llovet, JM; Montal, R; Ortiz-Barahona, V; Preiss, T; Schumann, U; Setien, F; Soler, M; Villanueva, A; Yang, L; Zhang, PH	1
Chen, SY; Huang, PH	1
Han, Y; Shao, Z; Zhou, D	1
An, R; Bai, Y; Cao, Y; Fan, Y; Gu, Q; Peng, J; Ren, L; Song, L; Song, W; Xie, XS; Yuan, T; Zheng, Y	1

Reviews

7 review(s) available for hydrogen sulfite and 5-methylcytosine

Article	Year
In vivo, in vitro, and in silico analysis of methylation of the HIV-1 provirus. Methods (San Diego, Calif.), 2011, Volume: 53, Issue:1 Topics: 5-Methylcytosine; Base Sequence; Cloning, Molecular; Computer Simulation; CpG Islands; DNA Methylation; DNA, Viral; Genome, Viral; HIV Infections; HIV-1; Humans; Models, Genetic; Proviruses; Sulfites; Virus Integration; Virus Latency	2011
Bisulfite methylation profiling of large genomes. Epigenomics, 2010, Volume: 2, Issue:2 Topics: 5-Methylcytosine; Animals; Arabidopsis; Cytosine; DNA Methylation; Epigenesis, Genetic; Genome; High-Throughput Nucleotide Sequencing; Humans; Mice; Nanopores; Sulfites	2010
Novel DNA binding domain-based assays for detection of methylated and nonmethylated DNA. Epigenomics, 2011, Volume: 3, Issue:1 Topics: 5-Methylcytosine; Biomarkers; CpG Islands; Cytosine; DNA (Cytosine-5-)-Methyltransferases; DNA Methylation; DNA Primers; Humans; Immunoprecipitation; Polymerase Chain Reaction; Protein Interaction Domains and Motifs; Sensitivity and Specificity; Sulfites	2011
5-methylcytosine and its derivatives. Advances in clinical chemistry, 2014, Volume: 67 Topics: 5-Methylcytosine; Chromatography, Thin Layer; Cytosine; DNA Methylation; Electrophoresis, Capillary; Endonucleases; Epigenesis, Genetic; Gas Chromatography-Mass Spectrometry; Humans; Microarray Analysis; Oxidation-Reduction; Polymerase Chain Reaction; Sulfites	2014
Technologies for Deciphering Epigenomic DNA Patterns. Advances in experimental medicine and biology, 2017, Volume: 978 Topics: 5-Methylcytosine; CpG Islands; Cytosine; DNA Methylation; Epigenomics; Formaldehyde; Humans; Microarray Analysis; Paraffin Embedding; Sulfites; Tissue Fixation; Uracil	2017
Methods for CpG Methylation Array Profiling Via Bisulfite Conversion. Methods in molecular biology (Clifton, N.J.), 2018, Volume: 1706 Topics: 5-Methylcytosine; Animals; CpG Islands; DNA Methylation; Humans; Oligonucleotide Array Sequence Analysis; Sequence Analysis, DNA; Sulfites	2018
Latest techniques to study DNA methylation. Essays in biochemistry, 2019, 12-20, Volume: 63, Issue:6 Topics: 5-Methylcytosine; Adenine; Animals; DNA; DNA Methylation; Epigenomics; Humans; Nanopores; Sequence Analysis, DNA; Sulfites	2019

Other Studies

81 other study(ies) available for hydrogen sulfite and 5-methylcytosine

Article	Year
A bisulfite method of 5-methylcytosine mapping that minimizes template degradation. Analytical biochemistry, 1995, Mar-20, Volume: 226, Issue:1 Topics: 5-Methylcytosine; Base Sequence; Cytosine; DNA; DNA Modification Methylases; DNA Primers; Hydrogen-Ion Concentration; Methylation; Molecular Sequence Data; Polymerase Chain Reaction; Sequence Analysis, DNA; Sulfites; Templates, Genetic	1995
Methylation pattern of Activator transposase binding sites in maize endosperm. The Plant cell, 1996, Volume: 8, Issue:4 Topics: 5-Methylcytosine; Base Sequence; Chromatids; Cytosine; DNA; DNA Primers; DNA Transposable Elements; Methylation; Molecular Sequence Data; Recombination, Genetic; Sulfites; Zea mays	1996
Active mammalian replication origins are associated with a high-density cluster of mCpG dinucleotides. Molecular and cellular biology, 1997, Volume: 17, Issue:1 Topics: 5-Methylcytosine; Animals; CHO Cells; CpG Islands; Cricetinae; Cytosine; Dinucleoside Phosphates; DNA; DNA Methylation; Molecular Sequence Data; Replication Origin; Ribosomal Proteins; Sulfites	1997
Imprinted segments in the human genome: different DNA methylation patterns in the Prader-Willi/Angelman syndrome region as determined by the genomic sequencing method. Human molecular genetics, 1997, Volume: 6, Issue:3 Topics: 5-Methylcytosine; Angelman Syndrome; Autoantigens; Chromosomes, Human, Pair 15; Cloning, Molecular; CpG Islands; Cytosine; Dinucleoside Phosphates; DNA Methylation; Female; Genomic Imprinting; Humans; Male; Plasmids; Polymerase Chain Reaction; Prader-Willi Syndrome; Promoter Regions, Genetic; Restriction Mapping; Ribonucleoproteins, Small Nuclear; Sequence Analysis, DNA; Sequence Deletion; snRNP Core Proteins; Sulfites	1997
Novel procedure for the detection of 5-methylcytosine. Acta microbiologica Polonica, 1998, Volume: 47, Issue:4 Topics: 5-Methylcytosine; Base Composition; Cytosine; DNA; DNA Methylation; DNA Modification Methylases; Genetic Techniques; Molecular Sequence Data; Plasmids; Sequence Analysis, DNA; Sulfites	1998
Does urea promote the bisulfite-mediated deamination of cytosine in DNA? Investigation aiming at speeding-up the procedure for DNA methylation analysis. Nucleic acids symposium series (2004), 2006, Issue:50 Topics: 5-Methylcytosine; Cell Line, Tumor; Cytosine; Deamination; DNA; DNA Methylation; Humans; Polymerase Chain Reaction; Sequence Analysis, DNA; Sulfites; Urea	2006
Bisulfite modification for analysis of DNA methylation. Current protocols in nucleic acid chemistry, 2008, Volume: Chapter 6 Topics: 5-Methylcytosine; Animals; Base Composition; Base Sequence; Deamination; DNA; DNA Methylation; Genome; Molecular Sequence Data; Sequence Analysis, DNA; Solubility; Solutions; Sulfites	2008
The reaction of cytosine with bisulfite by base flipping from the duplex. Nucleic acids symposium series (2004), 2008, Issue:52 Topics: 5-Methylcytosine; Base Pair Mismatch; Carbamates; Chromatography, High Pressure Liquid; Cytosine; DNA; Hydroxylamine; Naphthyridines; Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization; Sulfites	2008
Genome-wide high throughput analysis of DNA methylation in eukaryotes. Methods (San Diego, Calif.), 2009, Volume: 47, Issue:3 Topics: 5-Methylcytosine; Chemistry Techniques, Analytical; DNA; DNA Methylation; Electronic Data Processing; Eukaryotic Cells; Gene Library; Immunoprecipitation; Neurospora crassa; Reproducibility of Results; Sequence Alignment; Software; Sulfites	2009
Errors in the bisulfite conversion of DNA: modulating inappropriate- and failed-conversion frequencies. Nucleic acids research, 2008, Volume: 36, Issue:22 Topics: 5-Methylcytosine; Cytosine; DNA; DNA Methylation; DNA, Single-Stranded; Nucleic Acid Conformation; Oligonucleotides; Polymerase Chain Reaction; Sequence Analysis, DNA; Sulfites; Temperature	2008
RNA cytosine methylation analysis by bisulfite sequencing. Nucleic acids research, 2009, Volume: 37, Issue:2 Topics: 5-Methylcytosine; Animals; Cytosine; Drosophila melanogaster; Methylation; RNA; RNA, Ribosomal, 16S; RNA, Transfer, Asp; Sequence Analysis, RNA; Sulfites	2009
The behaviour of 5-hydroxymethylcytosine in bisulfite sequencing. PloS one, 2010, Jan-26, Volume: 5, Issue:1 Topics: 5-Methylcytosine; Base Sequence; Chromatography, Liquid; Cytosine; Mass Spectrometry; Molecular Sequence Data; Polymerase Chain Reaction; Sulfites	2010
Enzymatic approaches and bisulfite sequencing cannot distinguish between 5-methylcytosine and 5-hydroxymethylcytosine in DNA. BioTechniques, 2010, Volume: 48, Issue:4 Topics: 5-Methylcytosine; CpG Islands; Cytosine; DNA; DNA Methylation; DNA Restriction Enzymes; Genes, BRCA1; Humans; Octamer Transcription Factor-3; Polymerase Chain Reaction; Sequence Analysis, DNA; Sulfites	2010
Bisulfite sequencing of DNA. Current protocols in molecular biology, 2010, Volume: Chapter 7 Topics: 5-Methylcytosine; DNA; Sequence Analysis, DNA; Sulfites	2010
Bisulphite sequencing of plant genomic DNA. Methods in molecular biology (Clifton, N.J.), 2010, Volume: 655 Topics: 5-Methylcytosine; Base Sequence; Cytosine; DNA Methylation; DNA, Plant; DNA, Single-Stranded; Epigenomics; Genome, Plant; Plants; Polymerase Chain Reaction; Sequence Analysis, DNA; Sulfites; Uracil	2010
Bisulfite-free analysis of 5MeC-binding proteins and locus-specific methylation density using a microparticle-based flow cytometry assay. The Analyst, 2011, Feb-21, Volume: 136, Issue:4 Topics: 5-Methylcytosine; Biosensing Techniques; DNA; DNA Methylation; DNA-Binding Proteins; Flow Cytometry; Genetic Loci; Humans; Microspheres; Nucleic Acid Hybridization; Sulfites	2011
A sustained dietary change increases epigenetic variation in isogenic mice. PLoS genetics, 2011, Volume: 7, Issue:4 Topics: 5-Methylcytosine; Alleles; Animals; CpG Islands; Cytosine; Dietary Supplements; DNA Methylation; Environment; Epigenesis, Genetic; Gene Expression; Genetic Loci; Genetic Variation; Mice; Mice, Inbred C57BL; Phenotype; Principal Component Analysis; Promoter Regions, Genetic; Repetitive Sequences, Nucleic Acid; Stochastic Processes; Sulfites	2011
Function and detection of 5-methylcytosine in eukaryotic RNA. Epigenomics, 2010, Volume: 2, Issue:5 Topics: 5-Methylcytosine; Chromatography, High Pressure Liquid; Chromatography, Thin Layer; Humans; Mass Spectrometry; Methyltransferases; Models, Molecular; RNA; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins; Sequence Analysis, DNA; Sulfites; Transcriptome; tRNA Methyltransferases	2010
Simultaneous single-molecule detection of endogenous C-5 DNA methylation and chromatin accessibility using MAPit. Methods in molecular biology (Clifton, N.J.), 2012, Volume: 833 Topics: 5-Methylcytosine; Base Sequence; Chromatin; Chromatin Assembly and Disassembly; Cloning, Molecular; DNA Methylation; Humans; K562 Cells; Molecular Biology; Molecular Sequence Data; Sulfites; Transcription Initiation Site	2012
Quantitative sequencing of 5-methylcytosine and 5-hydroxymethylcytosine at single-base resolution. Science (New York, N.Y.), 2012, May-18, Volume: 336, Issue:6083 Topics: 5-Methylcytosine; Animals; CpG Islands; Cytosine; DNA; DNA Methylation; Embryonic Stem Cells; Epigenesis, Genetic; Genes, Intracisternal A-Particle; High-Throughput Nucleotide Sequencing; Long Interspersed Nucleotide Elements; Mice; Oxidation-Reduction; Rhenium; Sequence Analysis, DNA; Sulfites; Transcription, Genetic; Uracil	2012
Sequencing the sixth base (5-hydroxymethylcytosine): selective DNA oxidation enables base-pair resolution. Angewandte Chemie (International ed. in English), 2012, Oct-22, Volume: 51, Issue:43 Topics: 5-Methylcytosine; Base Pairing; Cytosine; Deamination; DNA; Oxidation-Reduction; Sequence Analysis, DNA; Sulfites	2012
BatMeth: improved mapper for bisulfite sequencing reads on DNA methylation. Genome biology, 2012, Oct-03, Volume: 13, Issue:10 Topics: 5-Methylcytosine; Algorithms; CpG Islands; DNA Methylation; Genome, Human; Genomics; Humans; Sequence Analysis, DNA; Sulfites	2012
Tet-assisted bisulfite sequencing of 5-hydroxymethylcytosine. Nature protocols, 2012, Volume: 7, Issue:12 Topics: 5-Methylcytosine; Animals; Chromatography, High Pressure Liquid; Cytosine; DNA-Binding Proteins; Glucosyltransferases; Mice; Polymerase Chain Reaction; Proto-Oncogene Proteins; Sequence Analysis, DNA; Sulfites	2012
Tet-mediated covalent labelling of 5-methylcytosine for its genome-wide detection and sequencing. Nature communications, 2013, Volume: 4 Topics: 5-Methylcytosine; Animals; DNA; DNA Methylation; DNA-Binding Proteins; Genome; Glucosyltransferases; Mass Spectrometry; Mice; Oxidation-Reduction; Promoter Regions, Genetic; Proto-Oncogene Proteins; Reproducibility of Results; Sequence Analysis, DNA; Staining and Labeling; Sulfites	2013
Intronic non-CG DNA hydroxymethylation and alternative mRNA splicing in honey bees. BMC genomics, 2013, Sep-30, Volume: 14 Topics: 5-Methylcytosine; Africa; Alternative Splicing; Animals; Bees; Behavior, Animal; CpG Islands; Cytosine; DNA Methylation; Europe; Exons; Gene Expression Regulation; Genes, Insect; Honey; Introns; Reproducibility of Results; RNA Splice Sites; RNA, Messenger; Sequence Analysis, DNA; Sulfites	2013
Standard DNA methylation analysis in mouse epidermis: bisulfite sequencing, methylation-specific PCR, and 5-methyl-cytosine (5mC) immunological detection. Methods in molecular biology (Clifton, N.J.), 2014, Volume: 1094 Topics: 5-Methylcytosine; Animals; Base Sequence; DNA; DNA Methylation; Epidermis; Mice; Mice, Inbred C57BL; Molecular Sequence Data; Polymerase Chain Reaction; Sequence Analysis, DNA; Sulfites; Tail	2014
Is the contribution of cis and trans protonated 5-methylcytosine-SO3(-) isomers equal in the conversion to thymine-SO3(-) under bisulfite conditions? A theoretical perspective. Physical chemistry chemical physics : PCCP, 2014, Aug-14, Volume: 16, Issue:30 Topics: 5-Methylcytosine; Isomerism; Models, Molecular; Protons; Sulfates; Sulfites; Thymine	2014
A Bayesian framework to identify methylcytosines from high-throughput bisulfite sequencing data. PLoS computational biology, 2014, Volume: 10, Issue:9 Topics: 5-Methylcytosine; Algorithms; Bayes Theorem; High-Throughput Nucleotide Sequencing; Humans; Models, Genetic; Sensitivity and Specificity; Sequence Analysis, DNA; Sulfites	2014
Accurate measurement of 5-methylcytosine and 5-hydroxymethylcytosine in human cerebellum DNA by oxidative bisulfite on an array (OxBS-array). PloS one, 2015, Volume: 10, Issue:2 Topics: 5-Methylcytosine; Adult; Cerebellum; Cytosine; DNA; DNA Methylation; Humans; Male; Oligonucleotide Array Sequence Analysis; Oxidation-Reduction; Reproducibility of Results; Sulfites	2015
Genetic and epigenetic modifications to the BBAA component of common wheat during its evolutionary history at the hexaploid level. Plant molecular biology, 2015, Volume: 88, Issue:1-2 Topics: 5-Methylcytosine; Biological Evolution; DNA Methylation; Epigenesis, Genetic; Fluorescent Antibody Technique; Genome, Plant; Interphase; Karyotyping; Metaphase; Phenotype; Polymorphism, Genetic; Reproducibility of Results; Sequence Analysis, DNA; Sulfites; Tetraploidy; Triticum	2015
Post-conversion targeted capture of modified cytosines in mammalian and plant genomes. Nucleic acids research, 2015, Jul-13, Volume: 43, Issue:12 Topics: 5-Methylcytosine; Alleles; Animals; Cell Line; Cytosine; DNA Methylation; Genome, Plant; Genomics; High-Throughput Nucleotide Sequencing; Humans; Mice; Polymorphism, Single Nucleotide; Sequence Analysis, DNA; Sulfites	2015
Base-resolution detection of N4-methylcytosine in genomic DNA using 4mC-Tet-assisted-bisulfite- sequencing. Nucleic acids research, 2015, Dec-02, Volume: 43, Issue:21 Topics: 5-Methylcytosine; Animals; Cytosine; DNA-Binding Proteins; DNA, Bacterial; Firmicutes; Genome, Bacterial; Mice; Nucleotide Motifs; Proto-Oncogene Proteins; Sequence Analysis, DNA; Sulfites	2015
Bisulfite-free, base-resolution analysis of 5-formylcytosine at the genome scale. Nature methods, 2015, Volume: 12, Issue:11 Topics: 5-Methylcytosine; Animals; Cell Line; CpG Islands; Cytosine; DNA Methylation; DNA Primers; Epigenomics; Gene Expression Regulation; Genome; Mice; Mice, Transgenic; Oligonucleotides; Oxygen; Polymerase Chain Reaction; Sequence Analysis, DNA; Stem Cells; Sulfites	2015
Selective oxidation of 5-hydroxymethylcytosine with micelle incarcerated oxidants to determine it at single base resolution. Bioorganic & medicinal chemistry letters, 2015, Dec-15, Volume: 25, Issue:24 Topics: 5-Methylcytosine; Base Sequence; Catalysis; Cytosine; Mass Spectrometry; Micelles; Oxidation-Reduction; Sulfites	2015
Methylation profiling by bisulfite sequencing analysis of the mtDNA Non-Coding Region in replicative and senescent Endothelial Cells. Mitochondrion, 2016, Volume: 27 Topics: 5-Methylcytosine; Cytosine; DNA, Intergenic; DNA, Mitochondrial; Endothelial Cells; Humans; Mitochondria; Sequence Analysis, DNA; Sulfites	2016
Enhanced Methylation Analysis by Recovery of Unsequenceable Fragments. PloS one, 2016, Volume: 11, Issue:3 Topics: 5-Methylcytosine; Chromatography, High Pressure Liquid; CpG Islands; DNA; DNA Methylation; Gene Library; Plasmodium berghei; Sequence Analysis, DNA; Sulfites; Tandem Mass Spectrometry	2016
Bisulfite oligonucleotide-capture sequencing for targeted base- and strand-specific absolute 5-methylcytosine quantitation. Age (Dordrecht, Netherlands), 2016, Volume: 38, Issue:3 Topics: 5-Methylcytosine; Aging; Animals; DNA; DNA Methylation; Epigenesis, Genetic; Rats; Sequence Analysis, DNA; Sulfites	2016
Single base resolution analysis of 5-hydroxymethylcytosine in 188 human genes: implications for hepatic gene expression. Nucleic acids research, 2016, 08-19, Volume: 44, Issue:14 Topics: 5-Methylcytosine; Adult; Base Pairing; Base Sequence; Chromatography, Liquid; CpG Islands; DNA; Gene Expression Regulation; Genes; Humans; Liver; Mass Spectrometry; Reproducibility of Results; Sequence Analysis, DNA; Sulfites	2016
Base-resolution profiling of active DNA demethylation using MAB-seq and caMAB-seq. Nature protocols, 2016, Volume: 11, Issue:6 Topics: 5-Methylcytosine; Animals; Cell Line; Cytosine; DNA; DNA Methylation; DNA Modification Methylases; Mice; Sequence Analysis, DNA; Sulfites	2016
DNA CpG Methylation (5-Methylcytosine) and Its Derivative (5-Hydroxymethylcytosine) Alter Histone Posttranslational Modifications at the Pomc Promoter, Affecting the Impact of Perinatal Diet on Leanness and Obesity of the Offspring. Diabetes, 2016, Volume: 65, Issue:8 Topics: 5-Methylcytosine; Animals; Brain; CpG Islands; Diet, High-Fat; DNA Methylation; Histones; Hypothalamus; Obesity; Pro-Opiomelanocortin; Promoter Regions, Genetic; Rats; Rats, Wistar; Sulfites; Thinness	2016
The Influence of Hydroxylation on Maintaining CpG Methylation Patterns: A Hidden Markov Model Approach. PLoS computational biology, 2016, Volume: 12, Issue:5 Topics: 5-Methylcytosine; Animals; Cell Division; Computational Biology; CpG Islands; DNA Methylation; DNA Replication; Embryonic Stem Cells; Hydroxylation; Markov Chains; Mice; Models, Biological; Stochastic Processes; Sulfites	2016
Methylation-assisted bisulfite sequencing to simultaneously map 5fC and 5caC on a genome-wide scale for DNA demethylation analysis. Nature protocols, 2016, Volume: 11, Issue:7 Topics: 5-Methylcytosine; Animals; Base Sequence; Cell Line; CpG Islands; Cytosine; DNA; DNA Methylation; Epigenesis, Genetic; Humans; Mice; Sequence Analysis, DNA; Sulfites	2016
Simple and accurate single base resolution analysis of 5-hydroxymethylcytosine by catalytic oxidative bisulfite sequencing using micelle incarcerated oxidants. Bioorganic & medicinal chemistry, 2016, 09-15, Volume: 24, Issue:18 Topics: 5-Methylcytosine; Adamantane; Animals; Cyclic N-Oxides; Cytosine; DNA, Single-Stranded; Embryonic Stem Cells; Iodobenzenes; Mice; Micelles; Onium Compounds; Oxidants; Oxidation-Reduction; Sequence Analysis, DNA; Sodium Dodecyl Sulfate; Sulfites; Temperature	2016
Base-Resolution Analysis of 5-Hydroxymethylcytosine by One-Pot Bisulfite-Free Chemical Conversion with Peroxotungstate. Journal of the American Chemical Society, 2016, 11-02, Volume: 138, Issue:43 Topics: 5-Methylcytosine; Base Pairing; Base Sequence; DNA; Selenium Radioisotopes; Sulfites; Tungsten Compounds	2016
Medium throughput bisulfite sequencing for accurate detection of 5-methylcytosine and 5-hydroxymethylcytosine. BMC genomics, 2017, 01-18, Volume: 18, Issue:1 Topics: 5-Methylcytosine; Adult; DNA Methylation; Humans; Male; Oxidation-Reduction; Sequence Analysis, DNA; Sulfites	2017
Comprehensive evaluation of genome-wide 5-hydroxymethylcytosine profiling approaches in human DNA. Epigenetics & chromatin, 2017, Volume: 10 Topics: 5-Methylcytosine; Brain; Cell Line, Tumor; CpG Islands; DNA; DNA Methylation; Gene Expression Profiling; Genome, Human; Humans; Immunoprecipitation; Mixed Function Oxygenases; Oligonucleotide Array Sequence Analysis; Oxidation-Reduction; Proto-Oncogene Proteins; Sequence Analysis, DNA; Sulfites; Whole Genome Sequencing	2017
Tagmentation-Based Library Preparation for Low DNA Input Whole Genome Bisulfite Sequencing. Methods in molecular biology (Clifton, N.J.), 2018, Volume: 1708 Topics: 5-Methylcytosine; Animals; CpG Islands; DNA Methylation; Epigenesis, Genetic; High-Throughput Nucleotide Sequencing; Humans; Mice; Regulatory Sequences, Nucleic Acid; Sulfites; Whole Genome Sequencing	2018
Low Input Whole-Genome Bisulfite Sequencing Using a Post-Bisulfite Adapter Tagging Approach. Methods in molecular biology (Clifton, N.J.), 2018, Volume: 1708 Topics: 5-Methylcytosine; Animals; CpG Islands; DNA Methylation; Epigenesis, Genetic; Gene Library; High-Throughput Nucleotide Sequencing; Mice; Sample Size; Sulfites; Whole Genome Sequencing	2018
Hairpin Bisulfite Sequencing: Synchronous Methylation Analysis on Complementary DNA Strands of Individual Chromosomes. Methods in molecular biology (Clifton, N.J.), 2018, Volume: 1708 Topics: 5-Methylcytosine; Chromosomes; DNA Methylation; DNA, Complementary; Epigenesis, Genetic; High-Throughput Nucleotide Sequencing; Humans; Nucleic Acid Conformation; Polymerase Chain Reaction; Sequence Analysis, DNA; Sulfites	2018
Tet-Assisted Bisulfite Sequencing (TAB-seq). Methods in molecular biology (Clifton, N.J.), 2018, Volume: 1708 Topics: 5-Methylcytosine; Animals; Cells, Cultured; DNA-Binding Proteins; Epigenomics; Glucosyltransferases; Humans; Mice; Proto-Oncogene Proteins; Recombinant Proteins; Sequence Analysis, DNA; Sulfites	2018
Multiplexing for Oxidative Bisulfite Sequencing (oxBS-seq). Methods in molecular biology (Clifton, N.J.), 2018, Volume: 1708 Topics: 5-Methylcytosine; DNA Methylation; Genomic Library; Humans; Organ Specificity; Sequence Analysis, DNA; Sulfites; Workflow	2018
Sulfinate Based Selective Labeling of 5-Hydroxymethylcytosine: Application to Biotin Pull Down Assay. Bioconjugate chemistry, 2018, 02-21, Volume: 29, Issue:2 Topics: 5-Methylcytosine; Biotin; Biotinylation; DNA; Sulfinic Acids; Sulfites	2018
DNA methylome profiling at single-base resolution through bisulfite sequencing of 5mC-immunoprecipitated DNA. BMC biotechnology, 2018, 02-06, Volume: 18, Issue:1 Topics: 5-Methylcytosine; CpG Islands; DNA Methylation; False Positive Reactions; High-Throughput Nucleotide Sequencing; Humans; Immunoprecipitation; Leukocytes, Mononuclear; Promoter Regions, Genetic; Repetitive Sequences, Nucleic Acid; Sulfites	2018
Two are better than one: HPoxBS - hairpin oxidative bisulfite sequencing. Nucleic acids research, 2018, 09-06, Volume: 46, Issue:15 Topics: 5-Methylcytosine; Animals; Cytosine; DNA; DNA (Cytosine-5-)-Methyltransferase 1; DNA Methylation; DNA-Binding Proteins; Embryonic Stem Cells; Gene Expression Regulation; High-Throughput Nucleotide Sequencing; Mice; Oxidation-Reduction; Proto-Oncogene Proteins; Sulfites	2018
Mirror Bisulfite Sequencing: A Method for Single-Base Resolution of Hydroxymethylcytosine. Analytical chemistry, 2018, 11-20, Volume: 90, Issue:22 Topics: 5-Methylcytosine; Base Sequence; DNA; DNA-Cytosine Methylases; Gene Library; Glucosyltransferases; Humans; Reproducibility of Results; Sensitivity and Specificity; Sequence Analysis, DNA; Sulfites	2018
ME-Class2 reveals context dependent regulatory roles for 5-hydroxymethylcytosine. Nucleic acids research, 2019, 03-18, Volume: 47, Issue:5 Topics: 5-Methylcytosine; Animals; Brain; Databases, Genetic; Datasets as Topic; Genes; Genome; Humans; Machine Learning; Methylation; Mice; Organ Specificity; Promoter Regions, Genetic; Sequence Analysis, RNA; Sulfites	2019
Bisulfite-free direct detection of 5-methylcytosine and 5-hydroxymethylcytosine at base resolution. Nature biotechnology, 2019, Volume: 37, Issue:4 Topics: 5-Methylcytosine; Animals; Base Sequence; Biotechnology; CpG Islands; DNA; DNA Methylation; Humans; Mice; Sequence Analysis, DNA; Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization; Sulfites; Whole Genome Sequencing	2019
Statistical methods for classification of 5hmC levels based on the Illumina Inifinium HumanMethylation450 (450k) array data, under the paired bisulfite (BS) and oxidative bisulfite (oxBS) treatment. PloS one, 2019, Volume: 14, Issue:6 Topics: 5-Methylcytosine; Case-Control Studies; DNA Methylation; Humans; Neoplasms; Oxidation-Reduction; Sulfites	2019
Library Preparation for Multiplexed Reduced Representation Bisulfite Sequencing with a Universal Adapter. Methods in molecular biology (Clifton, N.J.), 2019, Volume: 2018 Topics: 5-Methylcytosine; Animals; CpG Islands; Cytosine; DNA Methylation; DNA Primers; Gene Library; Rats; Sequence Analysis, DNA; Sulfites	2019
A Practical Guide to the Measurement and Analysis of DNA Methylation. American journal of respiratory cell and molecular biology, 2019, Volume: 61, Issue:4 Topics: 5-Methylcytosine; Base Sequence; Computational Biology; CpG Islands; DNA; DNA (Cytosine-5-)-Methyltransferase 1; DNA Methylation; High-Throughput Nucleotide Sequencing; Immunoprecipitation; Methylation; Molecular Structure; Nucleic Acid Hybridization; Quality Control; Sequence Alignment; Sulfites	2019
Episo: quantitative estimation of RNA 5-methylcytosine at isoform level by high-throughput sequencing of RNA treated with bisulfite. Bioinformatics (Oxford, England), 2020, 04-01, Volume: 36, Issue:7 Topics: 5-Methylcytosine; Animals; High-Throughput Nucleotide Sequencing; Humans; Mice; Protein Isoforms; RNA; Sequence Analysis, RNA; Software; Sulfites	2020
DNA 5-Methylcytosine-Specific Amplification and Sequencing. Journal of the American Chemical Society, 2020, 03-11, Volume: 142, Issue:10 Topics: 5-Methylcytosine; Animals; DNA; DNA Methylation; Humans; Mice; Nucleic Acid Amplification Techniques; Sequence Analysis, DNA; Sulfites; Whole Genome Sequencing	2020
Precise genomic mapping of 5-hydroxymethylcytosine via covalent tether-directed sequencing. PLoS biology, 2020, Volume: 18, Issue:4 Topics: 5-Methylcytosine; Acetylation; Animals; Bacteriophage lambda; Cell Line; DNA Methylation; Embryonic Stem Cells; Genome; Histones; Lysine; Mice; Oligonucleotides; Reproducibility of Results; Sequence Analysis, DNA; Sulfites	2020
Targeted bisulfite sequencing for biomarker discovery. Methods (San Diego, Calif.), 2021, Volume: 187 Topics: 5-Methylcytosine; Age Factors; Aging; Biomarkers; DNA Methylation; Epigenesis, Genetic; Epigenomics; High-Throughput Nucleotide Sequencing; Humans; Models, Genetic; Sequence Analysis, DNA; Sulfites	2021
High-Resolution Analysis of 5-Hydroxymethylcytosine by TET-Assisted Bisulfite Sequencing. Methods in molecular biology (Clifton, N.J.), 2021, Volume: 2198 Topics: 5-Methylcytosine; Animals; Cytosine; Dioxygenases; DNA; DNA Methylation; Epigenesis, Genetic; Epigenomics; Genome; Humans; Oxidation-Reduction; Sequence Analysis, DNA; Sulfites	2021
Oxidative Bisulfite Sequencing: An Experimental and Computational Protocol. Methods in molecular biology (Clifton, N.J.), 2021, Volume: 2198 Topics: 5-Methylcytosine; Animals; Computational Biology; Cytosine; Dioxygenases; DNA; DNA Methylation; High-Throughput Nucleotide Sequencing; Humans; Oxidation-Reduction; Oxidative Stress; Sequence Analysis, DNA; Sulfites	2021
Bisulfite-Free Sequencing of 5-Hydroxymethylcytosine with APOBEC-Coupled Epigenetic Sequencing (ACE-Seq). Methods in molecular biology (Clifton, N.J.), 2021, Volume: 2198 Topics: 5-Methylcytosine; Animals; Computational Biology; Cytidine Deaminase; Cytosine; DNA; DNA Methylation; Epigenomics; Humans; Proteins; Sequence Analysis, DNA; Single Molecule Imaging; Sulfites	2021
Subtraction-free and bisulfite-free specific sequencing of 5-methylcytosine and its oxidized derivatives at base resolution. Nature communications, 2021, 01-27, Volume: 12, Issue:1 Topics: 5-Methylcytosine; Animals; Base Sequence; Mice; Mouse Embryonic Stem Cells; Oxidation-Reduction; Pyridines; Sequence Analysis, DNA; Sulfites	2021
Distinguishing Active Versus Passive DNA Demethylation Using Illumina MethylationEPIC BeadChip Microarrays. Methods in molecular biology (Clifton, N.J.), 2021, Volume: 2272 Topics: 5-Methylcytosine; Computational Biology; Cytosine; DNA; DNA Demethylation; DNA Methylation; Epigenesis, Genetic; High-Throughput Nucleotide Sequencing; Humans; Microarray Analysis; Oxidation-Reduction; Sulfites	2021
Bioinformatic Estimation of DNA Methylation and Hydroxymethylation Proportions. Methods in molecular biology (Clifton, N.J.), 2021, Volume: 2272 Topics: 5-Methylcytosine; Computational Biology; DNA; DNA Methylation; Epigenesis, Genetic; High-Throughput Nucleotide Sequencing; Humans; Oxidation-Reduction; Sulfites	2021
TAB-seq and ACE-seq Data Processing for Genome-Wide DNA hydroxymethylation Profiling. Methods in molecular biology (Clifton, N.J.), 2021, Volume: 2272 Topics: 5-Methylcytosine; Computational Biology; DNA; DNA Methylation; Epigenesis, Genetic; Genome, Human; High-Throughput Nucleotide Sequencing; Humans; Mixed Function Oxygenases; Oxidation-Reduction; Proto-Oncogene Proteins; Sulfites	2021
High-Fidelity CRISPR/Cas9-Based Gene-Specific Hydroxymethylation. Methods in molecular biology (Clifton, N.J.), 2021, Volume: 2272 Topics: 5-Methylcytosine; Chromatin; Computational Biology; CRISPR-Cas Systems; DNA; DNA Methylation; Epigenesis, Genetic; Gene Editing; High-Throughput Nucleotide Sequencing; Humans; Mixed Function Oxygenases; Oxidation-Reduction; Promoter Regions, Genetic; Proto-Oncogene Proteins; Sulfites	2021
Quantitative and Single-Nucleotide Resolution Profiling of RNA 5-Methylcytosine. Methods in molecular biology (Clifton, N.J.), 2021, Volume: 2298 Topics: 5-Methylcytosine; Computational Biology; Nucleotides; Polymerase Chain Reaction; RNA; RNA Processing, Post-Transcriptional; Sequence Analysis, DNA; Sulfites	2021
The SEQC2 epigenomics quality control (EpiQC) study. Genome biology, 2021, 12-06, Volume: 22, Issue:1 Topics: 5-Methylcytosine; Algorithms; CpG Islands; DNA; DNA Methylation; Epigenesis, Genetic; Epigenome; Epigenomics; Genome, Human; High-Throughput Nucleotide Sequencing; Humans; Quality Control; Sequence Alignment; Sequence Analysis, DNA; Sulfites; Whole Genome Sequencing	2021
Whole human genome 5'-mC methylation analysis using long read nanopore sequencing. Epigenetics, 2022, Volume: 17, Issue:13 Topics: 5-Methylcytosine; DNA; DNA Methylation; Genome, Human; High-Throughput Nucleotide Sequencing; Humans; Nanopore Sequencing; Sequence Analysis, DNA	2022
Bisulfite-Free and Single-Base Resolution Detection of Epigenetic DNA Modification of 5-Methylcytosine by Methyltransferase-Directed Labeling with APOBEC3A Deamination Sequencing. Analytical chemistry, 2022, 11-08, Volume: 94, Issue:44 Topics: 5-Methylcytosine; Animals; Cytosine; Deamination; DNA; DNA Methylation; Epigenesis, Genetic; Humans; Mammals; Methyltransferases; Sequence Analysis, DNA; Sulfites	2022
Engineered APOBEC3C Sequencing Enables Bisulfite-Free and Direct Detection of DNA Methylation at a Single-Base Resolution. Analytical chemistry, 2023, 01-17, Volume: 95, Issue:2 Topics: 5-Methylcytosine; Cytidine Deaminase; Cytosine; DNA; DNA Methylation; Epigenesis, Genetic; Humans; Sequence Analysis, DNA; Sulfites	2023
Epigenetic inactivation of the 5-methylcytosine RNA methyltransferase NSUN7 is associated with clinical outcome and therapeutic vulnerability in liver cancer. Molecular cancer, 2023, 05-12, Volume: 22, Issue:1 Topics: 5-Methylcytosine; CpG Islands; DNA Methylation; Epigenesis, Genetic; Gene Expression Regulation, Neoplastic; Humans; Liver Neoplasms; Methyltransferases; Proteomics; RNA-Binding Proteins; RNA, Messenger; Transcription Factors	2023
Enrichment of mRNA and Bisulfite-mRNA Library Preparation for Next-Generation Sequencing. Journal of visualized experiments : JoVE, 2023, 07-07, Issue:197 Topics: 5-Methylcytosine; DNA Methylation; High-Throughput Nucleotide Sequencing; RNA; RNA, Messenger; Sequence Analysis, DNA; Sulfites	2023
Optimized bisulfite sequencing analysis reveals the lack of 5-methylcytosine in mammalian mitochondrial DNA. BMC genomics, 2023, Aug-04, Volume: 24, Issue:1 Topics: 5-Methylcytosine; Animals; DNA Methylation; DNA, Mitochondrial; Mammals; Mitochondria; Sequence Analysis, DNA; Sulfites	2023
Single-cell bisulfite-free 5mC and 5hmC sequencing with high sensitivity and scalability. Proceedings of the National Academy of Sciences of the United States of America, 2023, Dec-05, Volume: 120, Issue:49 Topics: 5-Methylcytosine; Animals; Cytosine; DNA Methylation; Mice; Sequence Analysis, DNA; Sulfites	2023