hydrogen and oligonucleotides

hydrogen has been researched along with oligonucleotides in 39 studies

Research

Studies (39)

TimeframeStudies, this research(%)All Research%
pre-19905 (12.82)18.7374
1990's12 (30.77)18.2507
2000's16 (41.03)29.6817
2010's4 (10.26)24.3611
2020's2 (5.13)2.80

Authors

AuthorsStudies
Fusek, M; Hartsuck, JA; Kezdy, FJ; Lin, X; Lin, Y; Tang, J1
Goldberg, IH; Meschwitz, SM1
Hosur, RV; Majumdar, A1
Arnold, FH; Cruz, P; Tinoco, I; Wolk, S1
Bax, A; Miles, HT; Miyashiro, H; Sklenár, V; Zon, G1
Fric, I; Guschlbauer, W; Holý, A1
Ikuta, S; Itakura, K; Kozlowski, SA; Patel, DJ1
Gorenstein, DG; Lai, K; Shah, DO1
Kainosho, M; Ono, A; Tate, S1
Cohen, JS; Jaroszewski, JW; Roy, S1
Folkers, PJ; Harmsen, BJ; Hilbers, CW; Konings, RN; Tesser, GI; van Boom, JH; van Duynhoven, JP; van Lieshout, HT1
Fairbrother, WJ; Kyogoku, Y; Ohkubo, T; Serikawa, Y; Shirakawa, M; Wright, PE1
Bishop, KD; Borer, PN; Pelczer, I1
Gross, J; Hahner, S; Hillenkamp, F; Karas, M; Leisner, A; Lützenkirchen, F; Nordhoff, E; Schäfer, J1
James, TL; Kainosho, M; Kojima, C; Ono, A1
Alexandrescu, AT; Dames, SA; Jaravine, VA; Lamour, FP1
Kulińska, K; Kuliński, T; Stawiński, J1
Griffey, RH; Hofstadler, SA; Sannes-Lowery, KA1
Gross, J; Gross, ML; Hillenkamp, F; Wan, KX1
Arruda, P; Borecký, J; Chaimovich, H; Costa, AD; de Andrade, PB; Jezek, P; Maia, IG; Vercesi, AE1
Hirabayashi, A; Huang, M1
Farràs, J; Garriga, L; Gorchs, O; Grandas, A; Hernández, M; Pedroso, E1
Chou, CW; Cole, RB; Limbach, PA1
Gorenstein, DG; Hazra, TK; Mitra, S; Somasunderam, A; Thiviyanathan, V1
Adhya, S; Lee, HJ; Lim, HM1
Kovacs, H; Pervushin, K; Vögeli, B1
Kozelka, J; Sletten, E; Vinje, J1
Børsting, P; Nielsen, KE; Nielsen, P1
Cai, M; Cheh, AM; Chiapperino, D; Hanaoka, F; Jerina, DM; Kroth, H; Masutani, C; Sayer, JM; Yagi, H1
Chowdhury, G; Daniels, JS; Gates, KS; Greenberg, MM; Junnotula, V1
Chow, MS; Liu, LV; Solomon, EI1
Blakeley, MP; Forsyth, VT; Leal, RM; Mitchell, EP; Teixeira, SC1
Merchán, M; Olaso-González, G; Serrano-Andrés, L1
Ackermann, D; Famulok, M; Hall, AM; Li, T1
Atherton, J; Page, MI; Powles, N1
Campos-Olivas, R; Damha, MJ; Deleavey, GF; González, C; Martin-Pintado, N; Orozco, M; Portella, G1
Bouzouita, D; Buisson, DA; Chaudret, B; Cholet, S; Chollet, C; Fenaille, F; Feuillastre, S; Garcia-Argote, S; Lippens, G; Marcon, E; Palazzolo, A; Pfeifer, V; Pieters, G; Tricard, S1
Banci, L; Cantini, F; Fourkiotis, NK; Gallo, A; Schwalbe, H; Spyroulias, GA; Sreeramulu, S; Tsika, AC1
Bari, S; Lau, JT; Liu, M; O'Reilly, D; Poully, JC; Schlathölter, T; Schwob, L; Wang, X; Zamudio-Bayer, V1

Other Studies

39 other study(ies) available for hydrogen and oligonucleotides

ArticleYear
pH dependence of kinetic parameters of pepsin, rhizopuspepsin, and their active-site hydrogen bond mutants.
    The Journal of biological chemistry, 1992, Sep-15, Volume: 267, Issue:26

    Topics: Aspartic Acid Endopeptidases; Base Sequence; Binding Sites; HIV Protease; Hydrogen; Hydrogen-Ion Concentration; Kinetics; Molecular Sequence Data; Oligonucleotides; Pepsin A; Substrate Specificity

1992
Selective abstraction of 2H from C-5' of thymidylate in an oligodeoxynucleotide by the radical center at C-6 of the diradical species of neocarzinostatin: chemical evidence for the structure of the activated drug-DNA complex.
    Proceedings of the National Academy of Sciences of the United States of America, 1991, Apr-15, Volume: 88, Issue:8

    Topics: Base Sequence; DNA Damage; Free Radicals; Glutathione; Hydrogen; Magnetic Resonance Spectroscopy; Models, Molecular; Molecular Sequence Data; Oligonucleotides; Thymidine Monophosphate; Zinostatin

1991
A frequency-time domain 3D COSY-J technique for measurement of 1H-31P coupling constants in oligonucleotides.
    Journal of biomolecular NMR, 1991, Volume: 1, Issue:2

    Topics: Hydrogen; Magnetic Resonance Spectroscopy; Oligonucleotides; Phosphorus Isotopes

1991
Structure, dynamics, and thermodynamics of mismatched DNA oligonucleotide duplexes d(CCCAGGG)2 and d(CCCTGGG)2.
    Biochemistry, 1987, Jun-30, Volume: 26, Issue:13

    Topics: Base Sequence; DNA; Hydrogen; Magnetic Resonance Spectroscopy; Molecular Sequence Data; Oligonucleotides; Temperature; Thermodynamics

1987
Assignment of the 31P and 1H resonances in oligonucleotides by two-dimensional NMR spectroscopy.
    FEBS letters, 1986, Nov-10, Volume: 208, Issue:1

    Topics: DNA; Hydrogen; Magnetic Resonance Spectroscopy; Oligonucleotides; Phosphorus

1986
Oligonucleotide conformations. Optical studies on GpU analogues with modified-uridine residues.
    European journal of biochemistry, 1972, Nov-21, Volume: 31, Issue:1

    Topics: Amines; Binding Sites; Chemical Phenomena; Chemistry; Circular Dichroism; Guanine Nucleotides; Hydrogen; Hydrogen-Ion Concentration; Ketones; Models, Structural; Molecular Conformation; Oligonucleotides; Polynucleotides; Temperature; Uracil Nucleotides

1972
Deoxyguanosine-deoxyadenosine pairing in the d(C-G-A-G-A-A-T-T-C-G-C-G) duplex: conformation and dynamics at and adjacent to the dG X dA mismatch site.
    Biochemistry, 1984, Jul-03, Volume: 23, Issue:14

    Topics: Hydrogen; Kinetics; Magnetic Resonance Spectroscopy; Mathematics; Models, Molecular; Nucleic Acid Conformation; Oligonucleotides; Phosphates; Temperature

1984
31P and two-dimensional 31P/1H correlated NMR spectra of Duplex d(Ap[17O]Gp[18O]Cp[16O]T) and assignment of 31P signals in d(ApGpCpT)2-actinomycin D complex.
    Biochemistry, 1984, Dec-18, Volume: 23, Issue:26

    Topics: Binding Sites; Dactinomycin; Hydrogen; Magnetic Resonance Spectroscopy; Molecular Conformation; Oligodeoxyribonucleotides; Oligonucleotides; Oxygen Isotopes; Phosphorus

1984
Sequential backbone assignment in 13C-labeled DNA by the 1H, 13C, 31P triple-resonance experiment, HCP-CCH-COSY.
    Journal of magnetic resonance. Series B, 1995, Volume: 106, Issue:1

    Topics: Base Sequence; Carbon Isotopes; DNA; Hydrogen; Magnetic Resonance Spectroscopy; Molecular Structure; Oligonucleotides; Organophosphates; Phosphorus Isotopes

1995
Nuclear magnetic resonance studies of oligonucleotides.
    Methods in molecular biology (Clifton, N.J.), 1994, Volume: 26

    Topics: Base Sequence; DNA; Hydrogen; Magnetic Resonance Spectroscopy; Models, Molecular; Molecular Sequence Data; Nucleic Acid Conformation; Oligodeoxyribonucleotides; Oligonucleotides; Organothiophosphates; Phosphorus

1994
Exploring the DNA binding domain of gene V protein encoded by bacteriophage M13 with the aid of spin-labeled oligonucleotides in combination with 1H-NMR.
    Biochemistry, 1993, Sep-14, Volume: 32, Issue:36

    Topics: Amino Acid Sequence; Bacteriophage M13; Binding Sites; DNA, Single-Stranded; Electron Spin Resonance Spectroscopy; Escherichia coli; Hydrogen; Magnetic Resonance Spectroscopy; Molecular Sequence Data; Oligonucleotides; Protein Structure, Secondary; Spin Labels; Viral Proteins

1993
Assignment of 1H, 15N, and 13C resonances, identification of elements of secondary structure and determination of the global fold of the DNA-binding domain of GAL4.
    Biochemistry, 1993, Mar-09, Volume: 32, Issue:9

    Topics: Amides; Amino Acid Sequence; Base Sequence; Carbon Isotopes; Computer Simulation; DNA-Binding Proteins; Fungal Proteins; Hydrogen; Magnetic Resonance Spectroscopy; Molecular Sequence Data; Nitrogen Isotopes; Oligonucleotides; Protein Conformation; Protein Folding; Saccharomyces cerevisiae Proteins; Transcription Factors

1993
Improved proton assignment for DNA by application of aliasing and dispersive-absorptive phasing to two-quantum COSY spectra.
    Journal of magnetic resonance. Series B, 1996, Volume: 110, Issue:1

    Topics: Base Sequence; Dactinomycin; DNA; Hydrogen; Image Enhancement; Magnetic Resonance Spectroscopy; Oligonucleotides; Protons; Sequence Analysis, DNA; Signal Processing, Computer-Assisted

1996
Investigations of the metastable decay of DNA under ultraviolet matrix-assisted laser desorption/ionization conditions with post-source-decay analysis and hydrogen/deuterium exchange.
    Journal of the American Society for Mass Spectrometry, 1998, Volume: 9, Issue:9

    Topics: Calibration; Deuterium; DNA; DNA Adducts; DNA Fragmentation; Hydrogen; Nucleic Acid Conformation; Oligonucleotides; Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization; Ultraviolet Rays

1998
DNA duplex dynamics: NMR relaxation studies of a decamer with uniformly 13C-labeled purine nucleotides.
    Journal of magnetic resonance (San Diego, Calif. : 1997), 1998, Volume: 135, Issue:2

    Topics: Adenosine; Bacillus subtilis; Carbon Isotopes; Deoxyribose; DNA, Bacterial; Guanidine; Hydrogen; Magnetic Resonance Spectroscopy; Models, Chemical; Molecular Structure; Motion; Nitrogen Isotopes; Oligonucleotides; Purine Nucleotides; Rotation

1998
NMR hydrogen exchange of the OB-fold protein LysN as a function of denaturant: the most conserved elements of structure are the most stable to unfolding.
    Journal of molecular biology, 1999, Jun-18, Volume: 289, Issue:4

    Topics: Anticodon; Conserved Sequence; Guanidine; Hydrogen; Lysine-tRNA Ligase; Nuclear Magnetic Resonance, Biomolecular; Oligonucleotides; Oligosaccharides; Protein Denaturation; Protein Folding; Protein Structure, Secondary

1999
Hydration of C-H groups in natural dithymidine nucleotide and its methylphosphonate analogues.
    Acta biochimica Polonica, 1998, Volume: 45, Issue:4

    Topics: Carbon; Crystallography; Hydrogen; Hydrogen Bonding; Models, Molecular; Oligonucleotides; Thionucleotides; Thymidine; Water

1998
Enhanced gas-phase hydrogen-deuterium exchange of oligonucleotide and protein ions stored in an external multipole ion reservoir.
    Journal of mass spectrometry : JMS, 2000, Volume: 35, Issue:1

    Topics: Deuterium; Fourier Analysis; Hydrogen; Ions; Mass Spectrometry; Oligonucleotides; Proteins

2000
Fragmentation mechanisms of oligodeoxynucleotides studied by H/D exchange and electrospray ionization tandem mass spectrometry.
    Journal of the American Society for Mass Spectrometry, 2001, Volume: 12, Issue:2

    Topics: Deuterium; Hydrogen; Oligonucleotides; Spectrometry, Mass, Electrospray Ionization

2001
Functional reconstitution of Arabidopsis thaliana plant uncoupling mitochondrial protein (AtPUMP1) expressed in Escherichia coli.
    FEBS letters, 2001, Sep-14, Volume: 505, Issue:2

    Topics: Adenosine Diphosphate; Adenosine Triphosphate; Arabidopsis; Arabidopsis Proteins; Blotting, Western; Carrier Proteins; Dose-Response Relationship, Drug; Electrophoresis, Polyacrylamide Gel; Escherichia coli; Genetic Vectors; Guanosine Diphosphate; Guanosine Triphosphate; Hydrogen; Ion Channels; Kinetics; Linoleic Acid; Membrane Proteins; Membrane Transport Proteins; Mitochondrial Proteins; Mitochondrial Uncoupling Proteins; Oligonucleotides; Plasmids; Proteins; Recombinant Proteins; Spectrometry, Fluorescence; Uncoupling Protein 1; Uncoupling Protein 2; Uncoupling Protein 3

2001
Multi-charged oligonucleotide ion formation in sonic spray ionization.
    Analytical sciences : the international journal of the Japan Society for Analytical Chemistry, 2002, Volume: 18, Issue:4

    Topics: Acetic Acid; Anions; Hydrogen; Ions; Metals; Oligonucleotides; Phosphoric Acids; Salts; Spectrometry, Mass, Electrospray Ionization

2002
A new method for the preparation of modified oligonucleotides.
    Organic letters, 2002, May-30, Volume: 4, Issue:11

    Topics: Amines; Hydrogen; Indicators and Reagents; Oligonucleotides; Resins, Plant; Spectrometry, Mass, Electrospray Ionization; Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization

2002
Fragmentation pathway studies of oligonucleotides in matrix-assisted laser desorption/ionization mass spectrometry by charge tagging and H/D exchange.
    Journal of the American Society for Mass Spectrometry, 2002, Volume: 13, Issue:12

    Topics: Deuterium; Hydrogen; Indicators and Reagents; Oligonucleotides; Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization; Terminology as Topic

2002
Solution structure of a DNA duplex containing 8-hydroxy-2'-deoxyguanosine opposite deoxyguanosine.
    Journal of molecular biology, 2003, Jan-17, Volume: 325, Issue:3

    Topics: 8-Hydroxy-2'-Deoxyguanosine; Base Pair Mismatch; Base Pairing; Deoxyguanosine; DNA; DNA Damage; DNA Repair; Hydrogen; Models, Molecular; Molecular Structure; Nuclear Magnetic Resonance, Biomolecular; Nucleic Acid Conformation; Oligonucleotides; Protons; Reactive Oxygen Species; Solutions

2003
An unsubstituted C2 hydrogen of adenine is critical and sufficient at the -11 position of a promoter to signal base pair deformation.
    The Journal of biological chemistry, 2004, Apr-23, Volume: 279, Issue:17

    Topics: Adenine; Base Pairing; Base Sequence; DNA; Escherichia coli; Hydrogen; Hydrogen Bonding; Models, Chemical; Molecular Sequence Data; Oligonucleotides; Plasmids; Promoter Regions, Genetic; Transcription, Genetic

2004
Simultaneous 1H- or 2H-, 15N- and multiple-band-selective 13C-decoupling during acquisition in 13C-detected experiments with proteins and oligonucleotides.
    Journal of biomolecular NMR, 2005, Volume: 31, Issue:1

    Topics: Carbon Isotopes; Deuterium; Hydrogen; Magnetic Resonance Spectroscopy; Nitrogen Isotopes; Oligonucleotides; Proteins; Ubiquitin

2005
Influence of dT20 and [d(AT)10]2 on cisplatin hydrolysis studied by two-dimensional [1H,15N] HMQC NMR spectroscopy.
    Chemistry (Weinheim an der Bergstrasse, Germany), 2005, Jun-20, Volume: 11, Issue:13

    Topics: Adenine; Antineoplastic Agents; Cisplatin; Dinucleoside Phosphates; DNA; Hydrogen; Hydrogen-Ion Concentration; Hydrolysis; Magnetic Resonance Spectroscopy; Molecular Structure; Nitrogen Isotopes; Oligonucleotides; Poly T; Thermodynamics; Thymidine

2005
Stabilisation of a nucleic acid three-way junction by an oligonucleotide containing a single 2'-C to 3'-O-phosphate butylene linkage prepared by a tandem RCM-hydrogenation method.
    Organic & biomolecular chemistry, 2005, Jun-07, Volume: 3, Issue:11

    Topics: Base Sequence; Hydrogen; Magnetic Resonance Spectroscopy; Nucleic Acids; Oligonucleotides; Organophosphorus Compounds; Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization

2005
Error-prone translesion synthesis by human DNA polymerase eta on DNA-containing deoxyadenosine adducts of 7,8-dihydroxy-9,10-epoxy-7,8,9,10-tetrahydrobenzo[a]pyrene.
    The Journal of biological chemistry, 2005, Dec-02, Volume: 280, Issue:48

    Topics: 7,8-Dihydro-7,8-dihydroxybenzo(a)pyrene 9,10-oxide; Base Pair Mismatch; Deoxyadenosines; DNA; DNA Adducts; DNA Primers; DNA Repair; DNA-Directed DNA Polymerase; Electrophoresis, Polyacrylamide Gel; Humans; Hydrocarbons; Hydrogen; Kinetics; Models, Chemical; Mutation; Nucleic Acid Conformation; Oligonucleotides; Sequence Analysis, DNA

2005
DNA strand damage product analysis provides evidence that the tumor cell-specific cytotoxin tirapazamine produces hydroxyl radical and acts as a surrogate for O(2).
    Journal of the American Chemical Society, 2007, Oct-24, Volume: 129, Issue:42

    Topics: Antineoplastic Agents; Chromatography, High Pressure Liquid; Cytotoxins; DNA Damage; Furaldehyde; Hydrogen; Hydroxyl Radical; Malondialdehyde; Models, Chemical; Neoplasms; Oligonucleotides; Sugar Acids; Time Factors; Tirapazamine; Transcription, Genetic; Triazines

2007
Further insights into the mechanism of the reaction of activated bleomycin with DNA.
    Proceedings of the National Academy of Sciences of the United States of America, 2008, Sep-09, Volume: 105, Issue:36

    Topics: Bleomycin; Circular Dichroism; DNA; Hydrogen; Kinetics; Ligands; Models, Molecular; Molecular Structure; Oligonucleotides; Oxygen

2008
A preliminary neutron crystallographic study of an A-DNA crystal.
    Acta crystallographica. Section F, Structural biology and crystallization communications, 2009, Mar-01, Volume: 65, Issue:Pt 3

    Topics: Crystallization; DNA, A-Form; Hydrogen; Neutron Diffraction; Oligonucleotides

2009
The role of adenine excimers in the photophysics of oligonucleotides.
    Journal of the American Chemical Society, 2009, Apr-01, Volume: 131, Issue:12

    Topics: Adenine; Dimerization; DNA; Hydrogen; Models, Molecular; Molecular Conformation; Nucleic Acid Conformation; Oligonucleotides; Photochemistry; Spectrophotometry, Ultraviolet; Ultraviolet Rays

2009
Input-dependent induction of oligonucleotide structural motifs for performing molecular logic.
    Journal of the American Chemical Society, 2012, Feb-22, Volume: 134, Issue:7

    Topics: Base Sequence; Circular Dichroism; Computers, Molecular; DNA; G-Quadruplexes; Hydrogen; Nucleic Acid Conformation; Nucleic Acid Denaturation; Oligonucleotides; Potassium; RNA

2012
Reactive intermediates in the H-phosphonate synthesis of oligonucleotides.
    Organic & biomolecular chemistry, 2012, Aug-14, Volume: 10, Issue:30

    Topics: Chemistry Techniques, Synthetic; Hydrogen; Oligonucleotides; Organophosphonates

2012
Backbone FC-H···O hydrogen bonds in 2'F-substituted nucleic acids.
    Angewandte Chemie (International ed. in English), 2013, Nov-11, Volume: 52, Issue:46

    Topics: Base Sequence; Carbon; Fluorine; Hydrogen; Hydrogen Bonding; Nucleic Acid Conformation; Nucleic Acids; Oligonucleotides; Oxygen; Thermodynamics; Transition Temperature

2013
Efficient Access to Deuterated and Tritiated Nucleobase Pharmaceuticals and Oligonucleotides using Hydrogen-Isotope Exchange.
    Angewandte Chemie (International ed. in English), 2019, 04-01, Volume: 58, Issue:15

    Topics: Chromatography, Liquid; Deuterium; Deuterium Exchange Measurement; Hydrogen; Mass Spectrometry; Oligonucleotides; Pharmaceutical Preparations

2019
    Biomolecular NMR assignments, 2021, Volume: 15, Issue:1

    Topics: Carbon Isotopes; Coronavirus Papain-Like Proteases; Drug Design; Hydrogen; Magnetic Resonance Spectroscopy; Nitrogen Isotopes; Oligonucleotides; Protein Domains; Protein Structure, Secondary; SARS-CoV-2; Virus Replication

2021
Direct Observation of Charge, Energy, and Hydrogen Transfer between the Backbone and Nucleobases in Isolated DNA Oligonucleotides.
    Chemistry (Weinheim an der Bergstrasse, Germany), 2023, Mar-01, Volume: 29, Issue:13

    Topics: DNA; Hydrogen; Oligonucleotides; Protons; Spectrum Analysis

2023